Query psy11331
Match_columns 780
No_of_seqs 95 out of 97
Neff 1.8
Searched_HMMs 29240
Date Fri Aug 16 15:39:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11331.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11331hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nft_A Translocator protein BI 14.7 43 0.0015 34.8 0.6 85 499-596 123-208 (303)
2 3zqs_A E3 ubiquitin-protein li 8.1 68 0.0023 30.9 -0.5 46 487-538 59-104 (186)
3 2dnn_A RNA-binding protein 12; 7.9 1.1E+02 0.0038 25.6 0.8 30 442-472 22-51 (109)
4 2kl7_A Fibulin-4; secreted, ca 7.2 1.3E+02 0.0043 24.1 0.7 12 334-345 54-65 (71)
5 2e5g_A U6 snRNA-specific termi 6.8 1.7E+02 0.0057 22.7 1.3 28 443-472 15-42 (94)
6 3ucg_A Polyadenylate-binding p 6.8 2E+02 0.0067 21.7 1.6 26 443-468 13-38 (89)
7 3anu_A D-serine dehydratase; P 6.5 2.4E+02 0.0083 27.3 2.5 53 455-513 5-57 (376)
8 3g27_A 82 prophage-derived unc 6.4 1.6E+02 0.0055 26.1 1.0 21 583-603 67-87 (96)
9 2dnm_A SRP46 splicing factor; 6.1 2.1E+02 0.0073 22.3 1.5 29 443-471 20-48 (103)
10 3s88_I GP1, GP, envelope glyco 6.0 1.8E+02 0.0061 29.8 1.2 37 612-650 37-73 (298)
No 1
>3nft_A Translocator protein BIPD; virulence, translocation, transport protein; 1.51A {Burkholderia pseudomallei} PDB: 2ixr_A 2j9t_A* 2izp_A
Probab=14.75 E-value=43 Score=34.78 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=54.3
Q ss_pred cccccchhHHHHHHHhhhccchhHHHHHhhhhcccCCCCccccCCC-CCCcccchhhhhhhhhhccccccchhHHHHHHh
Q psy11331 499 LDAIEDTITLIELYYQNFLSYTDQAQEHYKESNQIDSNTQTSTSQP-APNIKFDKYTLENFATSLTSHVPTSVRGLMERI 577 (780)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (780)
|..+.|.|.-++-|--.|-.-..++-+.|++-|++-|+-..-.+.- .-+||||+.++.+--..+-+..++
T Consensus 123 ~~~L~d~I~ngkdYlDvYa~IVk~YTdyyQdfNe~LSKlSd~IsAkDGN~IKFD~~sfk~~l~~l~~kY~~--------- 193 (303)
T 3nft_A 123 LQGLVDVIGQGKSDIDAYATIVEGLTKYFQSVADVMSKLQDYISAKDDKNMKIDGGKIKALIQQVIDHLPT--------- 193 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGEEEETTTEEEECHHHHHHHHHHHHHTCCE---------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCeeeecHHHHHHHHHHHHHhcCC---------
Confidence 4567788888887544444555666677777777666554333333 334999999998877776666653
Q ss_pred hhccccCCcchhhhhhhch
Q psy11331 578 NEMIVPSSRDTVRIFMREG 596 (780)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~ 596 (780)
+-.|+ ++..-|+++.
T Consensus 194 --v~~Ps--d~ea~~W~k~ 208 (303)
T 3nft_A 194 --MQLPK--GADIARWRKE 208 (303)
T ss_dssp --EECCT--TCCHHHHHHH
T ss_pred --CCCCC--HHHHHHHHHH
Confidence 66673 4455555553
No 2
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=8.11 E-value=68 Score=30.91 Aligned_cols=46 Identities=24% Similarity=0.459 Sum_probs=34.4
Q ss_pred hcCCeeEEeeeccccccchhHHHHHHHhhhccchhHHHHHhhhhcccCCCCc
Q psy11331 487 KDLPIAFRFELKLDAIEDTITLIELYYQNFLSYTDQAQEHYKESNQIDSNTQ 538 (780)
Q Consensus 487 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (780)
-|+|..|.|+-.-. .+|+++| +-|+...++-|+.|..-..||.++-
T Consensus 59 ~DlP~~~~~~w~~~-----ssL~~v~-~qF~~~Le~lq~Fwd~ldeID~~~w 104 (186)
T 3zqs_A 59 VDFPVPFCASWTPQ-----SSLISIY-SQFLAAIESLKAFWDVMDEIDEKTW 104 (186)
T ss_dssp CCCSSCCCCCCCTT-----CCHHHHH-HHHHHHHHHTHHHHHHHHHHHHHSC
T ss_pred EcCCCCcccccCCC-----ccHHHHH-HHHHHHHHHHHHHHHHHHhhhhcce
Confidence 37788776654433 4566665 5588889999999999999999874
No 3
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=7.85 E-value=1.1e+02 Score=25.62 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=23.3
Q ss_pred ccccchhhhhhhhhhhcccceeeeehhchhh
Q psy11331 442 IKLPFSKTRRQLIPMFKKFAEVTRIVKKIDR 472 (780)
Q Consensus 442 ~~lp~s~~r~~~~~~~~~~~~v~~i~~~id~ 472 (780)
-.||++.+..+|..+|.++ .|..|.=..|+
T Consensus 22 ~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~ 51 (109)
T 2dnn_A 22 HGMPFSAMENDVRDFFHGL-RVDAVHLLKDH 51 (109)
T ss_dssp ECCCSSCCHHHHHHHTTTS-CCCEEEECCCT
T ss_pred eCCCCCCCHHHHHHHhccC-CeeEEEEEECC
Confidence 4689999999999999999 77555433444
No 4
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=7.17 E-value=1.3e+02 Score=24.14 Aligned_cols=12 Identities=67% Similarity=1.616 Sum_probs=9.6
Q ss_pred CCCCCCCccCCC
Q psy11331 334 PNPCPVGYTAED 345 (780)
Q Consensus 334 PNPCPvGYTaeD 345 (780)
+++||.||...+
T Consensus 54 ~~~C~~Gy~~~~ 65 (71)
T 2kl7_A 54 PNPCPPGYEPDD 65 (71)
T ss_dssp CCCSCTTEEEEC
T ss_pred ccCCCCCeeeCC
Confidence 568999998754
No 5
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=6.85 E-value=1.7e+02 Score=22.74 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=23.6
Q ss_pred cccchhhhhhhhhhhcccceeeeehhchhh
Q psy11331 443 KLPFSKTRRQLIPMFKKFAEVTRIVKKIDR 472 (780)
Q Consensus 443 ~lp~s~~r~~~~~~~~~~~~v~~i~~~id~ 472 (780)
.||.+.+..+|..+|..+.+|..| .+|+
T Consensus 15 nl~~~~t~~~l~~~F~~~G~v~~v--~~~~ 42 (94)
T 2e5g_A 15 GFPRGVDSAQLSEYFLAFGPVASV--VMDK 42 (94)
T ss_dssp CCCTTCCHHHHHHHGGGTSCEEEE--EECS
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEE--EEcC
Confidence 578999999999999999999876 4444
No 6
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=6.75 E-value=2e+02 Score=21.67 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=22.0
Q ss_pred cccchhhhhhhhhhhcccceeeeehh
Q psy11331 443 KLPFSKTRRQLIPMFKKFAEVTRIVK 468 (780)
Q Consensus 443 ~lp~s~~r~~~~~~~~~~~~v~~i~~ 468 (780)
.||.+.+..+|..+|.++.+|..+.-
T Consensus 13 nlp~~~t~~~l~~~F~~~G~i~~v~i 38 (89)
T 3ucg_A 13 NVDYGATAEELEAHFHGCGSVNRVTI 38 (89)
T ss_dssp SCCTTCCHHHHHHHHGGGCCEEEEEE
T ss_pred CCCCCCCHHHHHHHHHhCCCEEEEEE
Confidence 57899999999999999998876643
No 7
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Probab=6.52 E-value=2.4e+02 Score=27.31 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=35.5
Q ss_pred hhhcccceeeeehhchhhhhhhhhhHHHHHHHhcCCeeEEeeeccccccchhHHHHHHH
Q psy11331 455 PMFKKFAEVTRIVKKIDRDLIASNMQTISQLQKDLPIAFRFELKLDAIEDTITLIELYY 513 (780)
Q Consensus 455 ~~~~~~~~v~~i~~~id~~~~~~~~qti~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (780)
+|++....-.. .||.|.|.+|.+.+++......+.+++-+|-- ....+.+...
T Consensus 5 ~~~~~~~tP~~---~idl~~l~~N~~~l~~~~~~~~~~l~~~vKa~---~~~~i~~~l~ 57 (376)
T 3anu_A 5 ALLDTLPTPAL---TIDRTTARRNAERMRERCRALGVRLRPHVKTH---KTLEGGLLAT 57 (376)
T ss_dssp CBGGGSCSSEE---EEEHHHHHHHHHHHHHHHHHHTCEECCBCTTT---CCHHHHHHHT
T ss_pred cccccCCCceE---EEeHHHHHHHHHHHHHHHHHcCCcEEEEEhhh---cCHHHHHHHH
Confidence 45555443222 38999999999999998876567788888863 3334444443
No 8
>3g27_A 82 prophage-derived uncharacterized protein YBCO; E.coli, prophage-associated, zinc-binding, structural genomi 2; 2.10A {Escherichia coli k-12}
Probab=6.40 E-value=1.6e+02 Score=26.11 Aligned_cols=21 Identities=19% Similarity=0.064 Sum_probs=17.2
Q ss_pred cCCcchhhhhhhchhhhhhhe
Q psy11331 583 PSSRDTVRIFMREGIFQTVVK 603 (780)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~ 603 (780)
+.+++.+|.+|.||++.|.+.
T Consensus 67 ~l~~ee~r~~~~egv~rT~~~ 87 (96)
T 3g27_A 67 FVDAGYAKECALEGMARTQVI 87 (96)
T ss_dssp SSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHH
Confidence 457899999999999988753
No 9
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=6.06 E-value=2.1e+02 Score=22.31 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=23.8
Q ss_pred cccchhhhhhhhhhhcccceeeeehhchh
Q psy11331 443 KLPFSKTRRQLIPMFKKFAEVTRIVKKID 471 (780)
Q Consensus 443 ~lp~s~~r~~~~~~~~~~~~v~~i~~~id 471 (780)
.||.+.+..+|..+|.++.+|..|.-..|
T Consensus 20 nLp~~~t~~~l~~~f~~~G~i~~v~i~~~ 48 (103)
T 2dnm_A 20 NLTYRTSPDSLRRVFEKYGRVGDVYIPRE 48 (103)
T ss_dssp SCCTTCCHHHHHHHHTTTSCEEEEECCBC
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEEeC
Confidence 58899999999999999998877654434
No 10
>3s88_I GP1, GP, envelope glycoprotein; glycosylation, viral membrane, immune system-viral protein C; HET: NAG; 3.35A {Sudan ebolavirus} PDB: 3ve0_I*
Probab=6.00 E-value=1.8e+02 Score=29.83 Aligned_cols=37 Identities=32% Similarity=0.425 Sum_probs=29.4
Q ss_pred eeeeeeEeeeeecccccccccccccccchhhhHhhhccc
Q psy11331 612 KCREILVSFQYQVGSVGHGLGGLQYAGKVASVFTWFWFL 650 (780)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~lWgh 650 (780)
-||+-|-|- =|+-|||-+|-|...|-.|-+. |--||-
T Consensus 37 VC~~~L~sT-~ql~svGl~LeG~gva~d~p~A-tKRWgF 73 (298)
T 3s88_I 37 VCKDHLAST-DQLKSVGLNLEGSGVSTDIPSA-TKRWGF 73 (298)
T ss_dssp CSSCCCCCG-GGEEEEEEESGGGTCCCSHHHH-TTTEEE
T ss_pred hhhhhccch-hhhhhhcccccccccccCCcch-hhhhcc
Confidence 599888664 5899999999999888777664 667884
Done!