Query psy11331
Match_columns 780
No_of_seqs 95 out of 97
Neff 1.8
Searched_HMMs 13730
Date Fri Aug 16 15:39:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11331.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11331hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dx5i2 g.3.11.1 (I:388-422) T 66.9 0.51 3.7E-05 34.0 -0.2 21 326-346 7-31 (35)
2 d1dx5i2 g.3.11.1 (I:388-422) T 60.6 0.74 5.4E-05 33.2 -0.3 21 681-701 7-31 (35)
3 d1wg5a_ d.58.7.1 (A:) Heteroge 14.1 30 0.0022 26.4 1.4 30 443-472 22-51 (104)
4 d1rcwa_ a.132.1.4 (A:) Hypothe 13.8 26 0.0019 28.3 1.0 23 136-158 8-30 (213)
5 d1hq8a_ d.169.1.1 (A:) NK cell 12.2 31 0.0023 26.2 0.9 21 329-352 1-22 (123)
6 d1whxa_ d.58.7.1 (A:) Probable 10.2 48 0.0035 24.9 1.4 24 443-466 17-40 (111)
7 d1urha2 c.46.1.2 (A:149-268) 3 9.9 1E+02 0.0076 23.1 3.4 54 27-81 20-80 (120)
8 d1wela1 d.58.7.1 (A:412-523) R 9.2 33 0.0024 26.7 0.0 24 443-466 25-48 (112)
9 d1weza_ d.58.7.1 (A:) Heteroge 8.6 51 0.0037 25.0 1.0 21 443-463 22-42 (102)
10 d1b7fa1 d.58.7.1 (A:123-204) S 8.4 63 0.0046 23.1 1.4 24 443-466 9-32 (82)
No 1
>d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.86 E-value=0.51 Score=34.03 Aligned_cols=21 Identities=48% Similarity=1.122 Sum_probs=17.3
Q ss_pred CCCCCCCCCCC----CCCCccCCCC
Q psy11331 326 TLPAYCNPPNP----CPVGYTAEDG 346 (780)
Q Consensus 326 ~LPAYCnPPNP----CPvGYTaeDg 346 (780)
.-||=|||.+| ||.||--++|
T Consensus 7 ~CPAdCdP~~p~~C~CPeGyIldeg 31 (35)
T d1dx5i2 7 ACPADCDPNTQASCECPEGYILDDG 31 (35)
T ss_dssp EEECEECTTSTTCEECCTTEEEETT
T ss_pred cCCCccCCCCCCcccCCCceEeccc
Confidence 35899999998 9999987654
No 2
>d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.55 E-value=0.74 Score=33.16 Aligned_cols=21 Identities=48% Similarity=1.122 Sum_probs=16.9
Q ss_pred CCCCCCCCCCC----CCCCCCCCCC
Q psy11331 681 TLPAYCNPPNP----CPVGYTAEDG 701 (780)
Q Consensus 681 ~LPAYCNPPNP----CPvGYTaeDG 701 (780)
.-||=|||.+| ||.||--++|
T Consensus 7 ~CPAdCdP~~p~~C~CPeGyIldeg 31 (35)
T d1dx5i2 7 ACPADCDPNTQASCECPEGYILDDG 31 (35)
T ss_dssp EEECEECTTSTTCEECCTTEEEETT
T ss_pred cCCCccCCCCCCcccCCCceEeccc
Confidence 34888999998 9999976654
No 3
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.13 E-value=30 Score=26.45 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=25.0
Q ss_pred cccchhhhhhhhhhhcccceeeeehhchhh
Q psy11331 443 KLPFSKTRRQLIPMFKKFAEVTRIVKKIDR 472 (780)
Q Consensus 443 ~lp~s~~r~~~~~~~~~~~~v~~i~~~id~ 472 (780)
-||++++..+|..+|..+.+|...+..++.
T Consensus 22 nLP~~~te~dI~~~F~~~g~v~~~v~~~~~ 51 (104)
T d1wg5a_ 22 GLPFGCSKEEIVQFFSGLEIVPNGMTLPVD 51 (104)
T ss_dssp SCCTTCCHHHHHHHTTTCCEEEEEEECCBC
T ss_pred CCCCCCCHHHHHHHHHhcCCceEEEEEEeC
Confidence 599999999999999999988765555544
No 4
>d1rcwa_ a.132.1.4 (A:) Hypothetical protein CT610 {Chlamydia trachomatis [TaxId: 813]}
Probab=13.81 E-value=26 Score=28.32 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=19.5
Q ss_pred HHHhhhccchhhhhhhcccceEE
Q psy11331 136 EYLQQSSLWGHQFVQDLKEGTVT 158 (780)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~ 158 (780)
+-+++..+|.|.|++.|.+|+++
T Consensus 8 ~~~~~~~~~~HPf~~~l~~G~l~ 30 (213)
T d1rcwa_ 8 LIIQNKHMLEHTFYVKWSKGELT 30 (213)
T ss_dssp HHHHHTCGGGSHHHHHHHTTCCC
T ss_pred HHHhhCccccCHHHHHHHcCCCC
Confidence 34567789999999999999976
No 5
>d1hq8a_ d.169.1.1 (A:) NK cell-activating receptor nkg2d {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.16 E-value=31 Score=26.18 Aligned_cols=21 Identities=33% Similarity=1.089 Sum_probs=14.6
Q ss_pred CCCCCCCCCCCCccC-CCCcccCcc
Q psy11331 329 AYCNPPNPCPVGYTA-EDGCLEDFE 352 (780)
Q Consensus 329 AYCnPPNPCPvGYTa-eDgCledFE 352 (780)
+|| +|||.|++. .+.|..-+.
T Consensus 1 g~c---~~Cp~gw~~~~~~CY~~~~ 22 (123)
T d1hq8a_ 1 GYC---GPCPNNWICHRNNCYQFFN 22 (123)
T ss_dssp CCC---CCCSTTCEEETTEEEEEEE
T ss_pred CcC---CCCCccCEEECCEEEEEEC
Confidence 477 469999886 557875443
No 6
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.24 E-value=48 Score=24.89 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.9
Q ss_pred cccchhhhhhhhhhhcccceeeee
Q psy11331 443 KLPFSKTRRQLIPMFKKFAEVTRI 466 (780)
Q Consensus 443 ~lp~s~~r~~~~~~~~~~~~v~~i 466 (780)
.||...+..+|..+|..|.+|..|
T Consensus 17 nLp~~~t~~~L~~~F~~fG~I~~v 40 (111)
T d1whxa_ 17 NLPAGTLAAEIQETFSRFGSLGRV 40 (111)
T ss_dssp SCCTTCCHHHHHHHHHTTSCEEEE
T ss_pred CCCCCCCHHHHHhhhhccCCccEE
Confidence 489999999999999999999876
No 7
>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}
Probab=9.90 E-value=1e+02 Score=23.09 Aligned_cols=54 Identities=28% Similarity=0.422 Sum_probs=25.8
Q ss_pred EEEEeccchhhhccccc-ccCCCCCCCCCCCccc------cCCcchhhHhHHHHHHHHhcch
Q psy11331 27 VLIVDARTTIHKYNKEL-YSGPKLRPGQGPSLYN------SKNDRVLTENLLREVVDKMGRD 81 (780)
Q Consensus 27 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 81 (780)
+.|||+|+. -.|+-+. ...+..++|.-|.-.| ...+.......+++...+.|-+
T Consensus 20 ~~liD~R~~-~~f~G~~~~~~~~~~~G~Ipga~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (120)
T d1urha2 20 AQIIDARPA-ARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVS 80 (120)
T ss_dssp SEEEECSCH-HHHSSCCCC----CCSSSCTTCEECCGGGGBSSSSBCCHHHHHHHHHTTTCC
T ss_pred cEEEeCCCH-HHcCcccCCcccccccccccccchhchhhcccccccCCHHHhhhhhhhcccC
Confidence 468999973 3343221 1124455665554322 2333444455566666655543
No 8
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.16 E-value=33 Score=26.69 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=20.9
Q ss_pred cccchhhhhhhhhhhcccceeeee
Q psy11331 443 KLPFSKTRRQLIPMFKKFAEVTRI 466 (780)
Q Consensus 443 ~lp~s~~r~~~~~~~~~~~~v~~i 466 (780)
-||++.+..+|..+|.++.++..+
T Consensus 25 nLp~~~t~~di~~~F~~~g~~~~~ 48 (112)
T d1wela1 25 GLPFEAENKHVIDFFKKLDIVEDS 48 (112)
T ss_dssp CCCTTCCHHHHHHHSCSSCBCTTT
T ss_pred cCCCcCcHHHHhhHHhhccccccc
Confidence 499999999999999999887543
No 9
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.56 E-value=51 Score=25.03 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=18.8
Q ss_pred cccchhhhhhhhhhhccccee
Q psy11331 443 KLPFSKTRRQLIPMFKKFAEV 463 (780)
Q Consensus 443 ~lp~s~~r~~~~~~~~~~~~v 463 (780)
-||++++..+|..+|..+.++
T Consensus 22 nLp~~~te~dl~~~F~~~~~~ 42 (102)
T d1weza_ 22 GLPYRATENDIYNFFSPLNPM 42 (102)
T ss_dssp SCCTTCCHHHHHHSSCSCCCS
T ss_pred CCCCcCCHHHHHHHHhccCcc
Confidence 599999999999999998654
No 10
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}
Probab=8.45 E-value=63 Score=23.12 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.8
Q ss_pred cccchhhhhhhhhhhcccceeeee
Q psy11331 443 KLPFSKTRRQLIPMFKKFAEVTRI 466 (780)
Q Consensus 443 ~lp~s~~r~~~~~~~~~~~~v~~i 466 (780)
.||.+.+..+|..+|.++.+|..+
T Consensus 9 nLp~~~t~~~l~~~F~~~G~v~~~ 32 (82)
T d1b7fa1 9 YLPQDMTDRELYALFRAIGPINTC 32 (82)
T ss_dssp CCCTTCCHHHHHHHHHTTSCEEEE
T ss_pred CCCCCCCHHHHHHHHHHhCCccee
Confidence 589999999999999999998765
Done!