RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11331
(780 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.7 bits (167), Expect = 5e-12
Identities = 88/644 (13%), Positives = 198/644 (30%), Gaps = 173/644 (26%)
Query: 148 FVQDLKEGTVTVKVQAIPLASGIRSIYSRAVSGDISSYKEMTNLF-TLLLLGVFSAEGFN 206
FV + + + +SI S+ I + TL L ++
Sbjct: 29 FVDNFD-------CKDVQ--DMPKSILSKEEIDHI--IMSKDAVSGTLRLFWTLLSKQ-- 75
Query: 207 GHFKNDRVLTENLLREVVDKMGRD----LADAYFDLPDLDSTNQNGRATDVDKDFDAVNP 262
E ++++ V+++ R L S D+ ++
Sbjct: 76 ----------EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 263 QTGFDYPESNNSPGHSPSLRDQEYLQ-QSSLWGHQ-----FVQGGAGEGKQLLKPEGSIK 316
F + + R Q YL+ + +L + + G G GK +
Sbjct: 126 ---F-------AKYNVS--RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA------ 167
Query: 317 NQNQVKTDATLPAYCNPPNP---CPVG-YTAEDGCLEDFENSAEYSRVYQAAQECMCDAE 372
V + C + + + LE + +YQ ++
Sbjct: 168 --LDVCLSYKV--QCKMDFKIFWLNLKNCNSPETVLEMLQK-----LLYQIDPNWTSRSD 218
Query: 373 HMFASVPIP----------YLLKMELKLGLLLLLCLHTALPFGFDDI---ETI--FDITE 417
H +++ + L + LL+L ++ + F+++
Sbjct: 219 HS-SNIKLRIHSIQAELRRLLKSKPYENCLLVL-----------LNVQNAKAWNAFNLSC 266
Query: 418 KTVSTLSKAPEIAELVNHANKDSEIKLPFSK---TRRQLIPMFKKFAEVT-----RIVKK 469
K + T ++ ++ + ++ A + I L T ++ + K+ + R V
Sbjct: 267 KILLT-TRFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 470 IDRDLIASNMQTISQLQKDLPIAFRFE-LKLDAIEDTITLIELYYQNFLSYTDQAQEHYK 528
+ ++ I++ +D ++ K + T+IE N L + ++ +
Sbjct: 325 TNPRRLS----IIAESIRDGLA--TWDNWKHVNCDKLTTIIESSL-NVLEPAEY-RKMFD 376
Query: 529 ------ESNQIDSNT-----QTSTSQPAPNI--KFDKYTLENFATSLTSHVPTSVRGLME 575
S I + + K KY+L + S +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL------VEKQPKESTISIPS 430
Query: 576 RINEMIVPSSRDTVRIFMREGIFQTVVKTFNVYLTIKCREILV------SFQYQVGSVGH 629
E+ V + + +++V +N+ T +++ + + +GH
Sbjct: 431 IYLELKVKLENEYA-------LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH----IGH 479
Query: 630 GLGGLQYAGKVA---SVFTWFWFLMEPSGGAGEGKQLLKPEGSIKNQNQVKTD--ATLPA 684
L +++ ++ VF F FL E K ++ + + N + + L
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFL--------EQK--IRHDSTAWNASGSILNTLQQLKF 529
Query: 685 YCN--PPNPCPVGYTAEDGCLEDF-----EN--SAEYSRVYQAA 719
Y N P Y + DF EN ++Y+ + + A
Sbjct: 530 YKPYICDN-DPK-YERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Score = 49.5 bits (117), Expect = 5e-06
Identities = 68/469 (14%), Positives = 129/469 (27%), Gaps = 139/469 (29%)
Query: 20 GHFKVIEVLIVDARTTIHKYNKELYSGPKLRPGQGPSLYNSKNDRVLTENLLRE------ 73
+ E ++ + +++ + S +S + LL+
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSD-HSSNIKLRIHSIQAEL--RRLLKSKPYENC 246
Query: 74 --VVDKMGRDLADA----YFDL--PDLDSTNQNGRATDVDKDFDAVNPQTGFDYPESNNS 125
V+ ++ +A F+L L +T R V D ++ T ++S
Sbjct: 247 LLVLL----NVQNAKAWNAFNLSCKILLTT----RFKQV---TDFLSAATTTHISLDHHS 295
Query: 126 PGHSPSLRDQEYLQQSSLWGHQFVQDLKEGTVTVKVQAIPLA-SGI---------RSIYS 175
L E + QDL +T P S I
Sbjct: 296 MT----LTPDEVKSLLLKYLDCRPQDLPREVLTT----NPRRLSIIAESIRDGLATWDNW 347
Query: 176 RAVSGD-----I-SSYK-----EMTNLFTLLLLGVFSAEGFNGHFKNDRVLTENLL---- 220
+ V+ D I SS E +F L + F + LL
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-----------FPPSAHIPTILLSLIW 396
Query: 221 --------REVVDKM------GRDLADAYFDLPDL--DSTNQNGRATDVDKDF-DAVNPQ 263
VV+K+ + ++ +P + + + + + D N
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 264 TGFDYPESNNSPGHSPSLRDQ---EYLQQSSLWGHQFVQGGAGEGKQLLKPEGSIKNQN- 319
FD ++ P DQ ++ GH E L + +
Sbjct: 457 KTFD----SDDL--IPPYLDQYFYSHI------GHHLKNIEHPERMTLF----RMVFLDF 500
Query: 320 ---QVKTDATLPAYCNPPNPCPVGYTAEDGCLEDFENSAEYSRVYQAAQECMCDAEHMFA 376
+ K A+ + L+ + Y +CD + +
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNT--------LQQLKFYKPY----------ICDNDPKYE 542
Query: 377 SVPIPYLLKMELKLGLLLLLCLHT-----ALPFGFDDIETIFDITEKTV 420
+ + +L K+ L+ +T AL + E IF+ K V
Sbjct: 543 RL-VNAILDFLPKIEENLICSKYTDLLRIAL---MAEDEAIFEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 2e-09
Identities = 100/619 (16%), Positives = 178/619 (28%), Gaps = 220/619 (35%)
Query: 87 FDLPDLDSTNQNGRATDVDKDFDAVNPQT---------------------GF--DYPESN 123
+P T A+ + + F+ + P+ G+ E +
Sbjct: 20 LLVP----TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS 75
Query: 124 NSPGHSPSLR------DQEYLQQSSLWGHQFVQDL--KEGTVTVKVQAIPLASGIRSIY- 174
L + YL+ + + H L + T VK + + I++
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGNDI--HALAAKLLQENDTTLVKTKEL-----IKNYIT 128
Query: 175 SRAVSGDISSYKEMTNLFTLLLLG---VFSAEGFNGHFKNDRVLTENLLREVVDKMGRDL 231
+R ++ K + LF + G + + F G D E LR++ L
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAI--FGGQGNTDDYFEE--LRDLYQ-TYHVL 183
Query: 232 ADAYFD-----LPDLDSTNQNGRATDVDKDFDAVNPQTGFDYPESNNSPGHSPSLRDQEY 286
L +L T D +K F G + E +P ++P D++Y
Sbjct: 184 VGDLIKFSAETLSELIRTTL-----DAEKVF-----TQGLNILEWLENPSNTP---DKDY 230
Query: 287 LQQS--SLWGHQFVQ----------GGA--GEGKQLLKPEGSIKNQNQVKTDATLPAYCN 332
L S +Q G GE + LK G+ + + T A A
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK--GATGHSQGLVT-AVAIA--- 284
Query: 333 PPNPCPVGYTAEDGCLEDF-ENSAEY--------SRVYQAAQECMCDAEHMFASV----- 378
+ E F + + R Y+A + S+
Sbjct: 285 ---------ETDSW--ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 379 -PIPYLLKMELKLGLLLLLCLHTALPFGFDDIETIFDITEKTVSTLSKAPEIAELVN--- 434
P P M L + L + ++ + T + K EI+ LVN
Sbjct: 334 VPSP----M--------LSI--SNLT--QEQVQDYVNKTNSHLPA-GKQVEIS-LVNGAK 375
Query: 435 ---------------------HANKDSEI-KLPFSKTRRQLIPMF-KKFAEVT------- 464
A + ++PFS+ R+ F +F V
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE--RK--LKFSNRFLPVASPFHSHL 431
Query: 465 --RIVKKIDRDLIASNMQTISQLQKDLPIAFRFELKLDAIEDTITLIELYYQNFLSYTDQ 522
I++DL+ +N +S KD+ I + DT +L
Sbjct: 432 LVPASDLINKDLVKNN---VSFNAKDIQI---------PVYDTFDGSDL----------- 468
Query: 523 AQEHYKESNQIDSNTQTSTSQPAPNIKFDKYTLENFATSLT-SHV----PTSVRG---LM 574
+ + + P +K++ T +H+ P G L
Sbjct: 469 -RVL--SGSISERIVDCIIRLP---VKWET------TTQFKATHILDFGPGGASGLGVLT 516
Query: 575 ERINE-----MIVPSSRDT 588
R + +IV + D
Sbjct: 517 HRNKDGTGVRVIVAGTLDI 535
Score = 54.7 bits (131), Expect = 1e-07
Identities = 46/266 (17%), Positives = 77/266 (28%), Gaps = 110/266 (41%)
Query: 36 IHKYNKELYSGPKLRPGQGPSLYNSKNDRVLT---ENL------LREVVDKMGRDLADAY 86
++K N L +G ++ SL N + V++ ++L LR+ G D +
Sbjct: 353 VNKTNSHLPAGKQVEI----SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 87 FDLPDLDSTNQNGRATDVDKDFDAVNPQTGFDYPESNNSPGHSPSLRDQEYLQQSSLWGH 146
F R F V SP HS L +S
Sbjct: 409 FS----------ERKLKFSNRFLPVA------------SPFHSH------LLVPAS---D 437
Query: 147 QFVQDLKEGTVTVKVQ--AIPLASGIRSIYSRAVSGDISSYKEMTNLFTLLLLGVFSAEG 204
+DL + V+ + IP V+
Sbjct: 438 LINKDLVKNNVSFNAKDIQIP---------------------------------VYDT-- 462
Query: 205 FNGHFKNDRVLTENLLREVVDKMGR-----DLADAY-------FD------LPDLDSTNQ 246
F+G + RVL+ ++ +VD + R + + F L L N+
Sbjct: 463 FDG--SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK 520
Query: 247 NGR------ATDVDKDFDAVNPQTGF 266
+G A +D + GF
Sbjct: 521 DGTGVRVIVAGTLDI---NPDDDYGF 543
Score = 50.0 bits (119), Expect = 3e-06
Identities = 76/465 (16%), Positives = 117/465 (25%), Gaps = 176/465 (37%)
Query: 52 GQGPSLYNSKNDRVLTENLLREVVDKMGRDLADAYFD-----LPDLDSTNQNGRATDVDK 106
GQG D E LR++ L L +L T D +K
Sbjct: 162 GQGN------TDDYFEE--LRDLYQ-TYHVLVGDLIKFSAETLSELIRTTL-----DAEK 207
Query: 107 DFDAVNPQTGFDYPESNNSPGHSPSLRDQEYLQQS--SLWGHQFVQ-------------- 150
F G + E +P ++P D++YL S +Q
Sbjct: 208 VF-----TQGLNILEWLENPSNTP---DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 151 --DLKEGT--VTVKVQAIPLASGIRSIYSRAVSGDISSYKE-----MTNLFTLLLLGVFS 201
+L+ T Q + A I A + S+ +T LF +GV
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAI------AETDSWESFFVSVRKAITVLF---FIGVRC 310
Query: 202 AEGFNGHFKNDRVLTENL--------------------LREVVDKMGRDLADA---YFDL 238
E + +L ++L +++ V+K L L
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 239 ------------P-DLDSTNQNGRATDVDKDFD---------AVNPQTGFDYPESNNSPG 276
P L N R D + F P + SP
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL-PVA--SPF 427
Query: 277 HSPSLRDQEYLQQSSLWGHQFVQGGAGEGKQLLKPEGSIKNQNQVKTDATLPAYCNPPNP 336
HS L L L + + K +
Sbjct: 428 HSHLLVPASDLINKDLVKNNV----SFNAKDIQ--------------------------- 456
Query: 337 CPVGYTAEDGCLEDFENSAEYSRVYQAA-QECMCDAEHMFASVPI--PYLLKMELKLGLL 393
PV Y DG D RV + E + D +P+ + +
Sbjct: 457 IPV-YDTFDG--SDL-------RVLSGSISERIVD---CIIRLPVKWETTTQFK------ 497
Query: 394 LLLCLHTALPFGFDDIETIFDITEK----------TVSTLSKAPE 428
H L FG + +T + TL P+
Sbjct: 498 ---ATH-ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Score = 49.7 bits (118), Expect = 4e-06
Identities = 67/467 (14%), Positives = 135/467 (28%), Gaps = 154/467 (32%)
Query: 236 FDLPDLDSTNQNGRATDVDKDFDAVNPQT---------------------GF--DYPESN 272
+P T A+ + + F+ + P+ G+ E +
Sbjct: 20 LLVP----TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS 75
Query: 273 NSPGHSPSLR------DQEYLQQSSLWGHQFVQGGAGEGKQLLKPEGSIKNQNQVKTDAT 326
L + YL+ + + H +LL+ + VKT
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGNDI--HALAA-------KLLQENDTT----LVKTKEL 122
Query: 327 LPAYCNPPNPCPVGYTAEDGCLEDFENSAEYSRVYQAAQECMCDAEHMFA-----SVPIP 381
+ Y TA F+ + S +++A E + A
Sbjct: 123 IKNY----------ITARIMAKRPFDKKSN-SALFRAVGE---GNAQLVAIFGGQGNTDD 168
Query: 382 YLLKMELKLGLLLLLCLH-TALPFGFDDIETIFDITEKTVSTLSKAPE-----------I 429
Y EL+ L+ T + + + +T+S L + I
Sbjct: 169 YF--EELRD-------LYQTYHVL----VGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 430 AELVNHANK--DSE--IKLPFSKTRRQLIPM-----FKKFAEVTRIVKKIDRDLIASNMQ 480
E + + + D + + +P S P+ + VT + + S ++
Sbjct: 216 LEWLENPSNTPDKDYLLSIPIS------CPLIGVIQLAHYV-VTAKLLGFTPGELRSYLK 268
Query: 481 TISQLQKDLPIAFRFELKLDAIEDTITLIELYYQNFLSYTD-------QAQEHYKESNQI 533
+ + L A A D+ E ++ + + E Y ++
Sbjct: 269 GATGHSQGLVTAVAI-----AETDSW---ESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 534 DSNTQTSTS----QPAP--NIK-FDKYTLENFATSLTSHVPT------------------ 568
S + S P+P +I + ++++ SH+P
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS 380
Query: 569 ----SVRGLMERINEMIVPSSRDTVRIFMREGIFQTVVKTFNVYLTI 611
S+ GL + + PS D RI + +K N +L +
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFS----ERKLKFSNRFLPV 423
Score = 37.7 bits (87), Expect = 0.017
Identities = 45/257 (17%), Positives = 77/257 (29%), Gaps = 86/257 (33%)
Query: 452 QLIPM----FKKFAEVTRIVKKIDRDLIASNMQTISQLQKDLP--IAFRFE-LKLDAIED 504
Q M +K + + D + +I + + P + F K I +
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 505 TITLIELYYQNFLSYTDQAQEHYKESNQIDSN----------TQTSTSQPA--------- 545
+ ++ + + ++ +KE N+ ++ + T +QPA
Sbjct: 1687 N--YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF 1744
Query: 546 ------PNIKFDKYTLENFA-------TSLTSHVPTSVRGLMERINEMIVPSSRDTVRI- 591
I D FA +L S+ +M S V +
Sbjct: 1745 EDLKSKGLIPADAT----FAGHSLGEYAAL-----ASLADVM---------SIESLVEVV 1786
Query: 592 FMREGIF-QTVVKTFNV----YLTIKCR--EILVSF-----QYQVGSVGHGLGGL----- 634
F R G+ Q V + Y I + SF QY V VG G L
Sbjct: 1787 FYR-GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
Query: 635 ------QY--AGKVASV 643
QY AG + ++
Sbjct: 1846 YNVENQQYVAAGDLRAL 1862
Score = 37.0 bits (85), Expect = 0.029
Identities = 51/331 (15%), Positives = 95/331 (28%), Gaps = 145/331 (43%)
Query: 221 REVVDKMGRDLADAY-FDLPDLDSTN----------QNGRA-----------TDVD---- 254
++V ++ D Y F + D+ N + G+ T VD
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 255 --KDFDAVNPQTG---FDYPESNNSPGHSPSLRDQEYLQ------QSSLWGHQFVQGGAG 303
K F +N + F + L ++ Q + + +
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKG--------LLSATQFTQPALTLMEKAAF---------- 1744
Query: 304 EGKQLLKPEGSIKNQNQVKTDATLPAYCNPPNPC----PVG-YTA---EDGCLEDFENSA 355
+ LK +G I P + +G Y A + E+
Sbjct: 1745 ---EDLKSKGLI-----------------PADATFAGHSLGEYAALASLADVM-SIESLV 1783
Query: 356 EYSRVYQ---AAQECMCDAEH------MFASVPIPYLLKMELKLGLLLLLCLHTALPFGF 406
E V+ Q + E M A P ++ A F
Sbjct: 1784 EV--VFYRGMTMQVAVPRDELGRSNYGMIAINPG----RV--------------AASFSQ 1823
Query: 407 DDIETIFD-ITEKTVSTLSKAPEIAELVNHANKDSE---IKLPFSKTRRQLIPMFKKFAE 462
+ ++ + + + ++T + E+VN+ N +++ + R L
Sbjct: 1824 EALQYVVERVGKRT-------GWLVEIVNY-NVENQQYVA----AGDLRAL----DTVTN 1867
Query: 463 VTRIVK--KIDRDLIASNMQTISQLQKDLPI 491
V +K KID I +LQK L +
Sbjct: 1868 VLNFIKLQKID----------IIELQKSLSL 1888
Score = 35.4 bits (81), Expect = 0.088
Identities = 20/186 (10%), Positives = 51/186 (27%), Gaps = 67/186 (36%)
Query: 50 RPGQGPSLYNS----KN-----DRVLTENL---LREVVD------------KMGRDLADA 85
G G LY + ++ D + + ++V + G+ + +
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 86 YFDLPDLDSTNQNGRATDVDKDFDAVNPQTGFDYPESNNSPGHSPSLRDQEYLQ------ 139
Y + + + + K+ + + F + L ++ Q
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG--------LLSATQFTQPALTLM 1739
Query: 140 QSSLWGHQFVQDLKEGTVTVKVQ------------------AIPLASGIRSIYSR----- 176
+ + + +DLK + + + S + ++ R
Sbjct: 1740 EKAAF-----EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 177 -AVSGD 181
AV D
Sbjct: 1795 VAVPRD 1800
Score = 34.3 bits (78), Expect = 0.21
Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 50/137 (36%)
Query: 551 DKYTLENFATSLTSHV---PTSV---------RGLMERINEMIVPSSRDTVRIFMREGIF 598
D + + + S+ V P ++ + + E + MI + D E IF
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT--EKIF 1707
Query: 599 QTVVK-----TFN-----VYLTIKCREI------LVSF-QYQV----GSV-------GHG 630
+ + + TF + T + L+ ++ G + GH
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSAT----QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS 1763
Query: 631 LGGLQYAGKV--ASVFT 645
LG +YA A V +
Sbjct: 1764 LG--EYAALASLADVMS 1778
Score = 32.7 bits (74), Expect = 0.61
Identities = 79/553 (14%), Positives = 141/553 (25%), Gaps = 226/553 (40%)
Query: 290 SSLWGH------QFVQGGAGEGKQLLKPEGSIKNQNQVKTDATLPA-YCNPPNPCPVGYT 342
++ + QF K L +P ++ T A L + +GY
Sbjct: 24 TASFFIASQLQEQFN-------KILPEPTEGFAADDEPTTPAELVGKF--------LGYV 68
Query: 343 AEDGCLEDFENSAEYSRVYQAA-----QECMCDAE-HMFASVPIPYLLKMELKLGLLLLL 396
+ L + ++ +V + + H A+ LL
Sbjct: 69 SS---LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK---------------LLQ 110
Query: 397 CLHTALPFGFDDIETIFDITEKTVSTLSKAPEIAELVNHANKDSEIKLPFSKTRRQLIPM 456
T L + I+ K A L + + QL+ +
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA-LFRAVGEGNA----------QLVAI 159
Query: 457 F-------KKFAEVTRIVKKIDRDLIASNMQTISQLQKDLPIAFRFELKLDAIEDTITLI 509
F F E+ RDL ++ + D I
Sbjct: 160 FGGQGNTDDYFEEL--------RDL--------------------YQTYHVLVGDLIKFS 191
Query: 510 ELYYQNFLSYTDQAQEHYKESNQIDSNTQTSTSQPAPNIKFDKYTLENFATSLTSHVPTS 569
+ T A++ + + I + ++ P DK L +P S
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP------DKDYL--------LSIPIS 237
Query: 570 VRGLMERINEMIVPSSRDTVRIFMREGIFQTVVKTFNVYLTIKCR-------EILVSFQY 622
+ G+ Q + +T + E+ +
Sbjct: 238 CPLI----------------------GVIQLA----HYVVT--AKLLGFTPGELRSYLK- 268
Query: 623 QVGSVGHGLGGLQYAGKVASVFTW--------------FW--------F--------LME 652
G+ GH GL A +A +W F+ + ++E
Sbjct: 269 --GATGHS-QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE 325
Query: 653 PSGGAGEGK---QLLKPEGSIKN--QNQV-----KTDATLP-------AYCNPPNPCPV- 694
S EG L SI N Q QV KT++ LP + N V
Sbjct: 326 DSLENNEGVPSPML-----SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS 380
Query: 695 GYTAEDGCLEDFENSAEYSRVYQAAQECMCDAEHMFACPQEPPQHNPNEIEYSPFLNPDK 754
G L + ++ P + + I +S ++
Sbjct: 381 GPPQS---LYGLNLTLRKAKA--------------------PSGLDQSRIPFS-----ER 412
Query: 755 NPYLQGDMLPIAA 767
LP+A+
Sbjct: 413 KLKFSNRFLPVAS 425
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 35.7 bits (81), Expect = 0.068
Identities = 23/152 (15%), Positives = 49/152 (32%), Gaps = 20/152 (13%)
Query: 379 PIPYLLKMELKLGLLLLLCLHTALPF-GFDDIETIFDITEKT-----VSTLSKAPEIAEL 432
P+ + L + LP ++ IF + V + AEL
Sbjct: 456 PVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAEL 515
Query: 433 VNHANKDSEIKL-----PFSKTRRQLIPMFKKFAEVTRIVKKIDRDLIASNMQTISQLQK 487
+ H ++ P +K + + +FA + + + ++ K
Sbjct: 516 IQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPK 575
Query: 488 DLPIAFRFELKLDAIEDTITLIELYYQNFLSY 519
++ L +E +++LY +LSY
Sbjct: 576 NIK-------DLMDLEAVHDVLDLYL--WLSY 598
>1aqs_A Cu-MT, Cu-metallothionein; copper detoxification, metal-thiolate
cluster; NMR {Saccharomyces cerevisiae} SCOP: g.46.1.1
Length = 53
Score = 30.9 bits (69), Expect = 0.16
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 304 EGKQLLKPEGSIKNQNQVKTDATLPAYCNPPNPCPVGYTAED 345
EG + GS KN Q + + P CN + CP G +E+
Sbjct: 3 EGHECQCQCGSCKNNEQCQKSCSCPTGCNSDDKCPCGNKSEE 44
Score = 30.9 bits (69), Expect = 0.16
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 659 EGKQLLKPEGSIKNQNQVKTDATLPAYCNPPNPCPVGYTAED 700
EG + GS KN Q + + P CN + CP G +E+
Sbjct: 3 EGHECQCQCGSCKNNEQCQKSCSCPTGCNSDDKCPCGNKSEE 44
>3nft_A Translocator protein BIPD; virulence, translocation, transport
protein; 1.51A {Burkholderia pseudomallei} PDB: 2ixr_A
2j9t_A* 2izp_A
Length = 303
Score = 32.6 bits (73), Expect = 0.44
Identities = 20/168 (11%), Positives = 45/168 (26%), Gaps = 3/168 (1%)
Query: 416 TEKTVSTLSKAPEIAELVNHANKDSEIKLPFSKTRRQLIPMFKKFAEVTRIVKKIDRDLI 475
++ V I E + D R L V + L
Sbjct: 38 VDRRVPEQKLGAAIDEFASLRLPDRIDGRFVDGRRANLTVFDDARVAVRGHARAQRNLLE 97
Query: 476 ASNMQTISQLQKDLPIAFRFELK--LDAIEDTITLIELYYQNFLSYTDQAQEHYKESNQI 533
+ + + L + D I + + + + ++++ +
Sbjct: 98 RLETELLGGTLDTAGDEGGIQPDPILQGLVDVIGQGKSDIDAYATIVEGLTKYFQSVADV 157
Query: 534 DSNTQTS-TSQPAPNIKFDKYTLENFATSLTSHVPTSVRGLMERINEM 580
S Q +++ N+K D ++ + H+PT I
Sbjct: 158 MSKLQDYISAKDDKNMKIDGGKIKALIQQVIDHLPTMQLPKGADIARW 205
>1rju_V Metallothionein; Cu(I)-thiolate, metal binding protein; 1.44A
{Synthetic} SCOP: g.46.1.1 PDB: 1aoo_A 1aqq_A 1aqr_A
1fmy_A
Length = 36
Score = 28.9 bits (64), Expect = 0.49
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 313 GSIKNQNQVKTDATLPAYCNPPNPCPVG 340
GS KN Q + + P CN + CP G
Sbjct: 8 GSCKNNEQCQKSCSCPTGCNSDDKCPCG 35
Score = 28.9 bits (64), Expect = 0.49
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 668 GSIKNQNQVKTDATLPAYCNPPNPCPVG 695
GS KN Q + + P CN + CP G
Sbjct: 8 GSCKNNEQCQKSCSCPTGCNSDDKCPCG 35
>2j0o_A Invasin IPAD; type III secretion, cell invasion, T3SS, plasmid,
virulence; 3.00A {Shigella flexneri} SCOP: a.250.1.1
Length = 318
Score = 32.2 bits (72), Expect = 0.62
Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 20/162 (12%)
Query: 409 IETIFDITEKTVSTLSKAPEIAELVNHANKDSEIKLPFSKTRRQLIPMFKKFAEVTRIVK 468
T + E + + + ++ + + S + P +K R+L+ K AE+
Sbjct: 55 TLTKTSLEEIALHSSQISMDVNKSAQLLDILSRHEYPINKDARELLHSAPKEAELDGDQM 114
Query: 469 KIDRDLIASNMQTISQLQKDLPIAFRFELKLDAIEDTITLIELYYQNFLSYTDQAQEHYK 528
R+L A +I+ + + L E ++ YQ+F +
Sbjct: 115 ISHRELWAKIANSINDINEQY---------LKVYEHAVSSYTQMYQDFSAVLSSLAGWIS 165
Query: 529 ESNQIDSNTQTSTSQPAPNIKFDKYTLENFATSLTSHVPTSV 570
D N ++K +L+ L
Sbjct: 166 PGGN-DGN----------SVKLQVNSLKKALEELKEKYKDKP 196
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics,
joint center FO structural genomics, JCSG, protein
structure initiative; 2.70A {Bacteroides fragilis}
Length = 517
Score = 32.0 bits (73), Expect = 0.92
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 73 EVVDKMGRDLADAYFDLPDLDSTNQNGRAT 102
E D + DL A LP + + GRAT
Sbjct: 151 ECYDFILEDLKKATEMLPASYGSREKGRAT 180
Score = 32.0 bits (73), Expect = 0.92
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 222 EVVDKMGRDLADAYFDLPDLDSTNQNGRAT 251
E D + DL A LP + + GRAT
Sbjct: 151 ECYDFILEDLKKATEMLPASYGSREKGRAT 180
>4evx_A Putative phage endolysin; structural genomics, PSI-biology, program
for the characteri secreted effector proteins, pcsep;
HET: MLY MSE; 1.70A {Salmonella enterica subsp}
Length = 106
Score = 29.9 bits (67), Expect = 0.93
Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 566 VPTSVRGLMERINEMIVPSSRDTVRIFMREGI---FQTVVKTFNVYLTIKCREILVSFQY 622
G M +E + + D F+ + + + RE L++ +
Sbjct: 32 NWVIGYGHMLTPDETLTFITPDQAEAFLLDDLNSCDILLQNCLPELNDRFQRETLIALMF 91
Query: 623 QVGS 626
+G
Sbjct: 92 SIGH 95
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
d.58.7.1
Length = 107
Score = 29.2 bits (66), Expect = 1.6
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 444 LPFSKTRRQLIPMFKKFAEVT--RIVKKIDR 472
+PF +R++ +F F E+ R+ KK+
Sbjct: 23 IPFQANQREIRELFSTFGELKTVRLPKKMTG 53
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 4.2
Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 41 KELYSGPKL-RPGQGPSL 57
K+L + KL P+L
Sbjct: 23 KKLQASLKLYADDSAPAL 40
Score = 28.8 bits (63), Expect = 4.3
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 551 DKYTLENFATSLTSHVPTSVRGLMERINEMI 581
+K L+ SL + S L I +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA--IKATM 46
Score = 28.4 bits (62), Expect = 5.2
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 17/44 (38%)
Query: 304 EGKQLLKPEGSIKNQNQVKTDATLPAYCNPPNPCP---VGYTAE 344
E + L K + S+K Y + P + T E
Sbjct: 18 EKQALKKLQASLK------------LYA--DDSAPALAIKATME 47
Score = 28.4 bits (62), Expect = 5.2
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 17/44 (38%)
Query: 659 EGKQLLKPEGSIKNQNQVKTDATLPAYCNPPNPCP---VGYTAE 699
E + L K + S+K Y + P + T E
Sbjct: 18 EKQALKKLQASLK------------LYA--DDSAPALAIKATME 47
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 29.3 bits (65), Expect = 4.5
Identities = 12/73 (16%), Positives = 24/73 (32%)
Query: 348 LEDFENSAEYSRVYQAAQECMCDAEHMFASVPIPYLLKMELKLGLLLLLCLHTALPFGFD 407
L D EY+ + + D + + K LK G ++ +
Sbjct: 128 LGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTK 187
Query: 408 DIETIFDITEKTV 420
D + IF ++ +
Sbjct: 188 DPKEIFKEQKEIL 200
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP
domain, MIF4G domain, RNA maturation, RNA export,
nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP:
d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B
3fey_B 1h6k_X
Length = 156
Score = 27.8 bits (62), Expect = 7.4
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 444 LPFSKTRRQLIPMFKKFAEVTRIVKKIDRD 473
L F T Q+ +F K ++ +I+ +D+
Sbjct: 47 LSFYTTEEQIYELFSKSGDIKKIIMGLDKM 76
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics,
center for structural genomics, JCSG; HET: MSE EPE;
1.35A {Bacteroides fragilis nctc 9343}
Length = 528
Score = 28.6 bits (64), Expect = 8.8
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 73 EVVDKMGRDLADAYFDLPDLDS--TNQNGRAT 102
+++ + A DLP + + GRA
Sbjct: 165 DILKWCVTEFTAAAADLPRFSAIPAGEAGRAC 196
Score = 28.6 bits (64), Expect = 8.8
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 222 EVVDKMGRDLADAYFDLPDLDS--TNQNGRAT 251
+++ + A DLP + + GRA
Sbjct: 165 DILKWCVTEFTAAAADLPRFSAIPAGEAGRAC 196
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA
splicing, adenine, mRNA processing, nucleus,
phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo
sapiens} PDB: 2f9d_A 2f9j_A 2fho_B
Length = 115
Score = 27.3 bits (61), Expect = 9.5
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 444 LPFSKTRRQLIPMFKKFAEVTRIVKKIDRD 473
LP+ T ++ +F K+ + +I +
Sbjct: 16 LPYKITAEEMYDIFGKYGPIRQIRVGNTPE 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.396
Gapped
Lambda K H
0.267 0.0577 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,785,554
Number of extensions: 718332
Number of successful extensions: 1768
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1751
Number of HSP's successfully gapped: 35
Length of query: 780
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 679
Effective length of database: 3,881,772
Effective search space: 2635723188
Effective search space used: 2635723188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.6 bits)