RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11331
         (780 letters)



>d1rjuv_ g.46.1.1 (V:) Metallothionein {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 36

 Score = 28.9 bits (64), Expect = 0.18
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 313 GSIKNQNQVKTDATLPAYCNPPNPCPVG 340
           GS KN  Q +   + P  CN  + CP G
Sbjct: 8   GSCKNNEQCQKSCSCPTGCNSDDKCPCG 35



 Score = 28.9 bits (64), Expect = 0.18
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 668 GSIKNQNQVKTDATLPAYCNPPNPCPVG 695
           GS KN  Q +   + P  CN  + CP G
Sbjct: 8   GSCKNNEQCQKSCSCPTGCNSDDKCPCG 35


>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein
           3 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 103

 Score = 26.4 bits (58), Expect = 4.9
 Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 462 EVTRIVKKIDRDLIASNMQTISQLQKDLPIAFRFELKLDAIEDT 505
           E+ RI KK+++ +     +    L K L      ++ +  ++ T
Sbjct: 13  ELLRIAKKLEKMVSRKKTEGALDLLKKL---NSCQMSIQLLQTT 53


>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 109

 Score = 26.7 bits (59), Expect = 5.3
 Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 4/57 (7%)

Query: 393 LLLLCLHTALPFGFDDIETIFDITEKTVSTLSK--APEIAELV--NHANKDSEIKLP 445
           + +    +A      +I  I  + + T+    +   P   +L   +        KLP
Sbjct: 51  IYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDKLP 107


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0671    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,867,444
Number of extensions: 136614
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 5
Length of query: 780
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 688
Effective length of database: 1,144,436
Effective search space: 787371968
Effective search space used: 787371968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.9 bits)