BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11333
(482 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/185 (46%), Positives = 115/185 (62%), Gaps = 1/185 (0%)
Query: 290 LFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYL 349
++AVGG SSVERY+P+ +W +VAPM RR GVGVAVLN LLYAVGG DG + L
Sbjct: 117 IYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL 176
Query: 350 NSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENK 409
NS E Y P+ N+W + P + R+ GV VL +YA GG DG LN VERYD +
Sbjct: 177 NSAECYYPERNEWRM-ITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET 235
Query: 410 WSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRKH 469
W+ VAPM R + + V G +Y +GG DG + L++VE +DP + W+ + M++ R
Sbjct: 236 WTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEVTRMTSGRSG 295
Query: 470 LGCAV 474
+G AV
Sbjct: 296 VGVAV 300
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 117/195 (60%), Gaps = 5/195 (2%)
Query: 287 GEVLFAVGGWCS---GDAISS-VERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGG 342
G +L+AVGG + G+ SS ++ Y+P ++ W A MS R +GV V++ +YAVGG
Sbjct: 63 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGG 122
Query: 343 HDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVER 402
G + +S+ERY+P+ ++W VAP + R VGVAVL+ LYAVGG DG LN E
Sbjct: 123 SHGCIHHSSVERYEPERDEWHL-VAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAEC 181
Query: 403 YDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAP 462
Y P+ N+W + PM T R G V VL +YA GG DGQ LN+VER+D + WT +AP
Sbjct: 182 YYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 241
Query: 463 MSTRRKHLGCAVFVG 477
M R LG V G
Sbjct: 242 MRHHRSALGITVHQG 256
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 121/202 (59%), Gaps = 10/202 (4%)
Query: 280 PRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYA 339
P + + G +++ GG+ ++S +E Y+P + W +A + R G+ V+ LLYA
Sbjct: 10 PCRAPKVGRLIYTAGGYFR-QSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYA 68
Query: 340 VGGH----DGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQ 395
VGG DG + ++++ Y+P TNQWS A + R +GV V+DG +YAVGG G
Sbjct: 69 VGGRNNSPDGNTDSSALDCYNPMTNQWS-PCASMSVPRNRIGVGVIDGHIYAVGGSHG-- 125
Query: 396 CLNH--VERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPK 453
C++H VERY+P+ ++W VAPM TRR+GV VAVL LYA+GG DG + LN+ E + P+
Sbjct: 126 CIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPE 185
Query: 454 LNRWTAMAPMSTRRKHLGCAVF 475
N W + PM+T R G V
Sbjct: 186 RNEWRMITPMNTIRSGAGVCVL 207
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 384 FLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGG----SD 439
+Y GG Q L+++E Y+P W R+A + R G+A V+GG LYA+GG D
Sbjct: 19 LIYTAGGYF-RQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 77
Query: 440 GQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVG 477
G + + ++ ++P N+W+ A MS R +G V G
Sbjct: 78 GNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDG 115
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/185 (46%), Positives = 115/185 (62%), Gaps = 1/185 (0%)
Query: 290 LFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYL 349
++AVGG SSVERY+P+ +W +VAPM RR GVGVAVLN LLYAVGG DG + L
Sbjct: 118 IYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL 177
Query: 350 NSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENK 409
NS E Y P+ N+W + P + R+ GV VL +YA GG DG LN VERYD +
Sbjct: 178 NSAECYYPERNEWRM-ITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET 236
Query: 410 WSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRKH 469
W+ VAPM R + + V G +Y +GG DG + L++VE +DP + W+ + M++ R
Sbjct: 237 WTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEVTRMTSGRSG 296
Query: 470 LGCAV 474
+G AV
Sbjct: 297 VGVAV 301
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 117/195 (60%), Gaps = 5/195 (2%)
Query: 287 GEVLFAVGGWCS---GDAISS-VERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGG 342
G +L+AVGG + G+ SS ++ Y+P ++ W A MS R +GV V++ +YAVGG
Sbjct: 64 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGG 123
Query: 343 HDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVER 402
G + +S+ERY+P+ ++W VAP + R VGVAVL+ LYAVGG DG LN E
Sbjct: 124 SHGCIHHSSVERYEPERDEWHL-VAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAEC 182
Query: 403 YDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAP 462
Y P+ N+W + PM T R G V VL +YA GG DGQ LN+VER+D + WT +AP
Sbjct: 183 YYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 242
Query: 463 MSTRRKHLGCAVFVG 477
M R LG V G
Sbjct: 243 MRHHRSALGITVHQG 257
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 121/202 (59%), Gaps = 10/202 (4%)
Query: 280 PRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYA 339
P + + G +++ GG+ ++S +E Y+P + W +A + R G+ V+ LLYA
Sbjct: 11 PCRAPKVGRLIYTAGGYFR-QSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYA 69
Query: 340 VGGH----DGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQ 395
VGG DG + ++++ Y+P TNQWS A + R +GV V+DG +YAVGG G
Sbjct: 70 VGGRNNSPDGNTDSSALDCYNPMTNQWS-PCASMSVPRNRIGVGVIDGHIYAVGGSHG-- 126
Query: 396 CLNH--VERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPK 453
C++H VERY+P+ ++W VAPM TRR+GV VAVL LYA+GG DG + LN+ E + P+
Sbjct: 127 CIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPE 186
Query: 454 LNRWTAMAPMSTRRKHLGCAVF 475
N W + PM+T R G V
Sbjct: 187 RNEWRMITPMNTIRSGAGVCVL 208
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 384 FLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGG----SD 439
+Y GG Q L+++E Y+P W R+A + R G+A V+GG LYA+GG D
Sbjct: 20 LIYTAGGYF-RQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 78
Query: 440 GQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVG 477
G + + ++ ++P N+W+ A MS R +G V G
Sbjct: 79 GNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDG 116
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 161 bits (407), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 91/202 (45%), Positives = 121/202 (59%), Gaps = 4/202 (1%)
Query: 276 PRTRPRKPSRRGEV---LFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAV 332
P + PR G + ++AVGG +SVERY+P+ +W +VAPM RR GVGVAV
Sbjct: 108 PMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV 167
Query: 333 LNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQD 392
LN LLYAVGG DG + LNS E Y P+ N+W A T R+ GV VL +YA GG D
Sbjct: 168 LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVLHNCIYAAGGYD 226
Query: 393 GVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDP 452
G LN VERYD + W+ VAPM RR + + V G +Y +GG DG + L++VE +DP
Sbjct: 227 GQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDP 286
Query: 453 KLNRWTAMAPMSTRRKHLGCAV 474
+ W+ + M++ R +G AV
Sbjct: 287 DTDTWSEVTRMTSGRSGVGVAV 308
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/195 (45%), Positives = 118/195 (60%), Gaps = 5/195 (2%)
Query: 287 GEVLFAVGGWCS---GDAISS-VERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGG 342
G +L+AVGG + G+ SS ++ Y+P ++ W APMS R +GV V++ +YAVGG
Sbjct: 71 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG 130
Query: 343 HDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVER 402
G + NS+ERY+P+ ++W VAP + R VGVAVL+ LYAVGG DG LN E
Sbjct: 131 SHGCIHHNSVERYEPERDEWHL-VAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAEC 189
Query: 403 YDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAP 462
Y P+ N+W + M T R G V VL +YA GG DGQ LN+VER+D + WT +AP
Sbjct: 190 YYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 249
Query: 463 MSTRRKHLGCAVFVG 477
M RR LG V G
Sbjct: 250 MKHRRSALGITVHQG 264
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 118/204 (57%), Gaps = 7/204 (3%)
Query: 276 PRTRPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLND 335
PR P + G +++ GG+ ++S +E Y+P W +A + R G+ V+
Sbjct: 15 PRGSHMAP-KVGRLIYTAGGYFR-QSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGG 72
Query: 336 LLYAVGGH----DGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQ 391
LLYAVGG DG + ++++ Y+P TNQWS AP + R +GV V+DG +YAVGG
Sbjct: 73 LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS-PCAPMSVPRNRIGVGVIDGHIYAVGGS 131
Query: 392 DGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFD 451
G N VERY+P+ ++W VAPM TRR+GV VAVL LYA+GG DG + LN+ E +
Sbjct: 132 HGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYY 191
Query: 452 PKLNRWTAMAPMSTRRKHLGCAVF 475
P+ N W + M+T R G V
Sbjct: 192 PERNEWRMITAMNTIRSGAGVCVL 215
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 384 FLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGG----SD 439
+Y GG Q L+++E Y+P + W R+A + R G+A V+GG LYA+GG D
Sbjct: 27 LIYTAGGYF-RQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 85
Query: 440 GQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVG 477
G + + ++ ++P N+W+ APMS R +G V G
Sbjct: 86 GNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDG 123
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/185 (47%), Positives = 115/185 (62%), Gaps = 1/185 (0%)
Query: 290 LFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYL 349
++AVGG +SVERY+P+ +W +VAPM RR GVGVAVLN LLYAVGG DG + L
Sbjct: 124 IYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL 183
Query: 350 NSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENK 409
NS E Y P+ N+W A T R+ GV VL +YA GG DG LN VERYD +
Sbjct: 184 NSAECYYPERNEWRMITAMNT-IRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET 242
Query: 410 WSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRKH 469
W+ VAPM RR + + V G +Y +GG DG + L++VE +DP + W+ + M++ R
Sbjct: 243 WTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSG 302
Query: 470 LGCAV 474
+G AV
Sbjct: 303 VGVAV 307
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/195 (45%), Positives = 118/195 (60%), Gaps = 5/195 (2%)
Query: 287 GEVLFAVGGWCS---GDAISS-VERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGG 342
G +L+AVGG + G+ SS ++ Y+P ++ W APMS R +GV V++ +YAVGG
Sbjct: 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG 129
Query: 343 HDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVER 402
G + NS+ERY+P+ ++W VAP + R VGVAVL+ LYAVGG DG LN E
Sbjct: 130 SHGCIHHNSVERYEPERDEWHL-VAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAEC 188
Query: 403 YDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAP 462
Y P+ N+W + M T R G V VL +YA GG DGQ LN+VER+D + WT +AP
Sbjct: 189 YYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 248
Query: 463 MSTRRKHLGCAVFVG 477
M RR LG V G
Sbjct: 249 MKHRRSALGITVHQG 263
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 116/201 (57%), Gaps = 6/201 (2%)
Query: 279 RPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLY 338
R + G +++ GG+ ++S +E Y+P W +A + R G+ V+ LLY
Sbjct: 16 RGSHAPKVGRLIYTAGGYFR-QSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLY 74
Query: 339 AVGGH----DGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGV 394
AVGG DG + ++++ Y+P TNQWS AP + R +GV V+DG +YAVGG G
Sbjct: 75 AVGGRNNSPDGNTDSSALDCYNPMTNQWS-PCAPMSVPRNRIGVGVIDGHIYAVGGSHGC 133
Query: 395 QCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKL 454
N VERY+P+ ++W VAPM TRR+GV VAVL LYA+GG DG + LN+ E + P+
Sbjct: 134 IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPER 193
Query: 455 NRWTAMAPMSTRRKHLGCAVF 475
N W + M+T R G V
Sbjct: 194 NEWRMITAMNTIRSGAGVCVL 214
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 384 FLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGG----SD 439
+Y GG Q L+++E Y+P + W R+A + R G+A V+GG LYA+GG D
Sbjct: 26 LIYTAGGYF-RQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 84
Query: 440 GQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVG 477
G + + ++ ++P N+W+ APMS R +G V G
Sbjct: 85 GNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDG 122
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 112/185 (60%), Gaps = 1/185 (0%)
Query: 290 LFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYL 349
++AVGG +SVERY+P+ +W +VAP RR GVGVAVLN LLYAVGG DG + L
Sbjct: 124 IYAVGGSHGCIHHNSVERYEPERDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNRL 183
Query: 350 NSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENK 409
NS E Y P+ N+W A T R+ GV VL +YA GG DG LN VERYD +
Sbjct: 184 NSAECYYPERNEWRXITAXNT-IRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET 242
Query: 410 WSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRKH 469
W+ VAP RR + + V G +Y +GG DG + L++VE +DP + W+ + ++ R
Sbjct: 243 WTFVAPXKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRXTSGRSG 302
Query: 470 LGCAV 474
+G AV
Sbjct: 303 VGVAV 307
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 115/195 (58%), Gaps = 5/195 (2%)
Query: 287 GEVLFAVGGWCS---GDAISS-VERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGG 342
G +L+AVGG + G+ SS ++ Y+P ++ W AP S R +GV V++ +YAVGG
Sbjct: 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGG 129
Query: 343 HDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVER 402
G + NS+ERY+P+ ++W VAP + R VGVAVL+ LYAVGG DG LN E
Sbjct: 130 SHGCIHHNSVERYEPERDEWHL-VAPXLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAEC 188
Query: 403 YDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAP 462
Y P+ N+W + T R G V VL +YA GG DGQ LN+VER+D + WT +AP
Sbjct: 189 YYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 248
Query: 463 MSTRRKHLGCAVFVG 477
RR LG V G
Sbjct: 249 XKHRRSALGITVHQG 263
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 115/201 (57%), Gaps = 6/201 (2%)
Query: 279 RPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLY 338
R + G +++ GG+ ++S +E Y+P + W +A + R G+ V+ LLY
Sbjct: 16 RGSHAPKVGRLIYTAGGYFR-QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLY 74
Query: 339 AVGGH----DGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGV 394
AVGG DG + ++++ Y+P TNQWS AP + R +GV V+DG +YAVGG G
Sbjct: 75 AVGGRNNSPDGNTDSSALDCYNPXTNQWS-PCAPXSVPRNRIGVGVIDGHIYAVGGSHGC 133
Query: 395 QCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKL 454
N VERY+P+ ++W VAP TRR+GV VAVL LYA+GG DG + LN+ E + P+
Sbjct: 134 IHHNSVERYEPERDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPER 193
Query: 455 NRWTAMAPMSTRRKHLGCAVF 475
N W + +T R G V
Sbjct: 194 NEWRXITAXNTIRSGAGVCVL 214
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 384 FLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGG----SD 439
+Y GG Q L+++E Y+P W R+A + R G+A V+GG LYA+GG D
Sbjct: 26 LIYTAGGYF-RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 84
Query: 440 GQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVG 477
G + + ++ ++P N+W+ AP S R +G V G
Sbjct: 85 GNTDSSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDG 122
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 108/263 (41%), Positives = 145/263 (55%), Gaps = 25/263 (9%)
Query: 222 QVLQHVRLPLLSPKFLVGTVG-SDLLVRSDEACRDLVDEAKNYLL-LPQERPLMQGPRTR 279
V +R P+ PK +V G + +RS E C D +E + + LP R
Sbjct: 3 SVRTRLRTPMNLPKLMVVVGGQAPKAIRSVE-CYDFKEERWHQVAELPSRR--------- 52
Query: 280 PRKPSRRGEV-----LFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLN 334
R G V +FAVGG+ + +V+ YDP W VA M RR +G AVLN
Sbjct: 53 ----CRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLN 108
Query: 335 DLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQD-- 392
LLYAVGG DG + L+S+E Y+ ++N+W VAP + R+SVGV V+ G LYAVGG D
Sbjct: 109 GLLYAVGGFDGSTGLSSVEAYNIKSNEW-FHVAPMNTRRSSVGVGVVGGLLYAVGGYDVA 167
Query: 393 GVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDP 452
QCL+ VE Y+ N+W+ +A M+TRR G V VL LYA+GG DG +VE +DP
Sbjct: 168 SRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDP 227
Query: 453 KLNRWTAMAPMSTRRKHLG-CAV 474
N W +A M+ R++ G CAV
Sbjct: 228 TTNAWRQVADMNMCRRNAGVCAV 250
Score = 144 bits (364), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 119/201 (59%), Gaps = 4/201 (1%)
Query: 277 RTRPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDL 336
RTR R P +++ VGG AI SVE YD + W VA + RRC G+ + L
Sbjct: 5 RTRLRTPMNLPKLMVVVGGQAP-KAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGL 63
Query: 337 LYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQC 396
++AVGG +G + +++ YDP +QW+ VA R+++G AVL+G LYAVGG DG
Sbjct: 64 VFAVGGFNGSLRVRTVDSYDPVKDQWT-SVANMRDRRSTLGAAVLNGLLYAVGGFDGSTG 122
Query: 397 LNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSP--LNTVERFDPKL 454
L+ VE Y+ K N+W VAPM TRR V V V+GG LYA+GG D S L+TVE ++
Sbjct: 123 LSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATT 182
Query: 455 NRWTAMAPMSTRRKHLGCAVF 475
N WT +A MSTRR G V
Sbjct: 183 NEWTYIAEMSTRRSGAGVGVL 203
Score = 141 bits (355), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 115/190 (60%), Gaps = 4/190 (2%)
Query: 289 VLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSY 348
+L+AVGG+ +SSVE Y+ +S++W VAPM+ RR VGV V+ LLYAVGG+D S
Sbjct: 110 LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASR 169
Query: 349 --LNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPK 406
L+++E Y+ TN+W+ +A ++ R+ GV VL+ LYAVGG DG VE YDP
Sbjct: 170 QCLSTVECYNATTNEWTY-IAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPT 228
Query: 407 ENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAP-MST 465
N W +VA M R V + G LY +GG DG L +VE ++P ++WT ++ MST
Sbjct: 229 TNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMST 288
Query: 466 RRKHLGCAVF 475
R + G V
Sbjct: 289 GRSYAGVTVI 298
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 56/95 (58%)
Query: 288 EVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQS 347
+L+AVGG SVE YDP ++ W+ VA M+ R GV +N LLY VGG DG
Sbjct: 205 NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSC 264
Query: 348 YLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLD 382
L S+E Y+P T++W+ + ++ R+ GV V+D
Sbjct: 265 NLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVID 299
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 122/256 (47%), Gaps = 54/256 (21%)
Query: 273 MQGPRTRPRKPSRRGEVLFAVGGWCSGDA-ISSVERYDPQSSDWKI-------------- 317
MQGPRTR R + EVL VGG+ S + I VE+YDP++ +W
Sbjct: 2 MQGPRTRARLGAN--EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV 59
Query: 318 ------------------------------------VAPMSKRRCGVGVAVLNDLLYAVG 341
VAPM+ RR G L D++Y G
Sbjct: 60 SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSG 119
Query: 342 GHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVE 401
G DG S+ERYDP +QWS + + R G+ V G +Y +GG DG+ LN VE
Sbjct: 120 GFDGSRRHTSMERYDPNIDQWSM-LGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVE 178
Query: 402 RYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMA 461
+YDP W+ V PM T+R G VA+L +Y +GG DG + L++VE ++ + + WT +
Sbjct: 179 KYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT 238
Query: 462 PMSTRRKHLGCAVFVG 477
M+T R ++G V G
Sbjct: 239 SMTTPRCYVGATVLRG 254
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 144/268 (53%), Gaps = 20/268 (7%)
Query: 212 NVSERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVR-SDEACRDLV--DEAKNYLLLPQ 268
+++ +R+++A V H R+ +++G G D R S C D ++ Y + P
Sbjct: 48 SITRKRRYVASVSLHDRI------YVIG--GYDGRSRLSSVECLDYTADEDGVWYSVAPM 99
Query: 269 E-RPLMQGPRTRPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCG 327
R + G T G++++ GG+ +S+ERYDP W ++ M R G
Sbjct: 100 NVRRGLAGATTL-------GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG 152
Query: 328 VGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYA 387
G+ V + ++Y +GG+DG + LNS+E+YDP T W+ +V P + R+ GVA+L+ +Y
Sbjct: 153 AGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWT-NVTPMATKRSGAGVALLNDHIYV 211
Query: 388 VGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTV 447
VGG DG L+ VE Y+ + + W+ V MTT R V VL G LYAI G DG S L+++
Sbjct: 212 VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSI 271
Query: 448 ERFDPKLNRWTAMAPMSTRRKHLGCAVF 475
E +DP ++ W + M T+R G V
Sbjct: 272 ECYDPIIDSWEVVTSMGTQRCDAGVCVL 299
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 273 MQGPRTRPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAV 332
M PR RG L+A+ G+ +SS+E YDP W++V M +RC GV V
Sbjct: 240 MTTPRCYVGATVLRGR-LYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCV 298
Query: 333 LND 335
L +
Sbjct: 299 LRE 301
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 125/238 (52%), Gaps = 9/238 (3%)
Query: 32 RRHRELCDVVL---NVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDV- 87
RR CD+ L G R+ AHR VL+A + YF + +G+ +ESR V +R
Sbjct: 45 RRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEP 104
Query: 88 -----AMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLDPSNCLG 142
++ +IE+ YT I V +V +L A L+ +++ C EFLK++L SNC+
Sbjct: 105 GPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVA 164
Query: 143 IRAFADTHSCRDLLRIADKFTQHNFQEVMESEEFLILPVAQLVDIISSDELNVRSEEQVF 202
I + A ++ L A + NF +V++ EEF LP + D +S E+ V SEE +F
Sbjct: 165 IHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLF 224
Query: 203 NAIMSWLKYNVSERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVRSDEACRDLVDEA 260
++ W++ N ER ++ ++ + +RL + P +L V + LV ++E C LV +A
Sbjct: 225 ETVLKWVQRNAEERERYFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADA 282
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 123/238 (51%), Gaps = 9/238 (3%)
Query: 32 RRHRELCDVVL---NVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDV- 87
RR CD+ L G R+ AHR VL+A + YF + +G+ +ESR V R
Sbjct: 27 RRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEP 86
Query: 88 -----AMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLDPSNCLG 142
++ +IE+ YT I V +V +L A L+ +++ C EFLK++L SNC+
Sbjct: 87 GPEPDTVEAVIEYXYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVA 146
Query: 143 IRAFADTHSCRDLLRIADKFTQHNFQEVMESEEFLILPVAQLVDIISSDELNVRSEEQVF 202
I + A ++ L A + NF +V++ EEF LP + D +S E+ V SEE +F
Sbjct: 147 IHSLAHXYTLSQLALKAADXIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLF 206
Query: 203 NAIMSWLKYNVSERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVRSDEACRDLVDEA 260
++ W++ N ER ++ ++ + +RL P +L V + LV ++E C LV +A
Sbjct: 207 ETVLKWVQRNAEERERYFEELFKLLRLSQXKPTYLTRHVKPERLVANNEVCVKLVADA 264
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 11/222 (4%)
Query: 242 GSDLLVRSDEACRDLVDEAKNYLLLPQERPLMQGPRTRPRKPSRRGEVLFAVGGWCSGDA 301
GS L C ++V ++ L P PR + G++ + G A
Sbjct: 63 GSQLFPIKRMDCYNVVKDSWYSKLGPPT------PRDSLAACAAEGKIYTSGGSEVGNSA 116
Query: 302 ISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSY----LNSIERYDP 357
+ E YD ++ W M +RC G+ N L+Y GG G + LNS E YDP
Sbjct: 117 LYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDP 176
Query: 358 QTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMT 417
T W+ ++ P R + G+ + ++AVGGQ+G+ L++VE YD K N+W V+PM
Sbjct: 177 ATETWT-ELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP 235
Query: 418 TRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTA 459
+ + V A +G +Y + G G L + ++ + ++W A
Sbjct: 236 WKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
Query: 337 LYAVGGHD-GQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDG-- 393
+Y GG + G S L E YD +T W + T R S G+ +G +Y GG G
Sbjct: 104 IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ-RCSHGMVEANGLIYVCGGSLGNN 162
Query: 394 --VQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFD 451
+ LN E YDP W+ + PM R + + ++A+GG +G L+ VE +D
Sbjct: 163 VSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYD 222
Query: 452 PKLNRWTAMAPMSTRRKHLGCA 473
KLN W ++PM + + CA
Sbjct: 223 IKLNEWKMVSPMPWKGVTVKCA 244
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 290 LFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYL 349
+FAVGG + +VE YD + ++WK+V+PM + V A + ++Y + G G L
Sbjct: 203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRL 262
Query: 350 NSIERYDPQTNQWSCD----VAPTTSCRTSV 376
I Y+ +T++W + P TSC V
Sbjct: 263 GHILEYNTETDKWVANSKVRAFPVTSCLICV 293
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 120/232 (51%), Gaps = 2/232 (0%)
Query: 19 KHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAM--FTGELAESRQ 76
+H +L +S+ R CD L + +I + +L+A SPY R + +
Sbjct: 13 QHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGST 72
Query: 77 AEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLD 136
++ + I ++++ ++ I + E +Q ++ AA LL L +++ +CCEFL+ +
Sbjct: 73 YKIELEGISVXVXREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIA 132
Query: 137 PSNCLGIRAFADTHSCRDLLRIADKFTQHNFQEVMESEEFLILPVAQLVDIISSDELNVR 196
NC+GIR FA + + +A ++ + +F++V +EEFL L +L ++IS ++LNV
Sbjct: 133 AENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLEKLNVG 192
Query: 197 SEEQVFNAIMSWLKYNVSERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVR 248
+E VF A++ W+ ++ R+ H V + + L +L ++ LVR
Sbjct: 193 NERYVFEAVIRWIAHDTEIRKVHXKDVXSALWVSGLDSSYLREQXLNEPLVR 244
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 80/172 (46%), Gaps = 4/172 (2%)
Query: 309 DPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQS--YLNSIERYDPQTNQWSCDV 366
D SS+W + P+ RC G+ ++D +Y V G D Q+ L+S+ YDP +WS +V
Sbjct: 84 DNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS-EV 142
Query: 367 APTTSCRTSVGVAVLDGFLYAVGGQ-DGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAV 425
V +G +Y +GG+ D +C N V Y+PK+ W +APM T R V
Sbjct: 143 KNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGV 202
Query: 426 AVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVG 477
A+ G + GG +VE FD K N+W M R + G
Sbjct: 203 AIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAG 254
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 15/172 (8%)
Query: 301 AISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGH-DGQSYLNSIERYDPQT 359
++ SV YDP ++ W V + + G V N ++Y +GG D + N + Y+P+
Sbjct: 125 SLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKK 184
Query: 360 NQWSCDVAPTTSCRTSVGVAVLDGFLYAVGG--QDGVQCLNHVERYDPKENKWSRVAPMT 417
W D+AP + R+ GVA+ G + GG +DG+ VE +D K NKW +
Sbjct: 185 GDWK-DLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSA--SVEAFDLKTNKWEVMTEFP 241
Query: 418 TRRLGVAVAVLGGFLYAIGG-------SDGQSP--LNTVERFDPKLNRWTAM 460
R +++ L G LYAIGG S +P +N + +++ W M
Sbjct: 242 QERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 273 MQGPRTRPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAV 332
M+ PR+ +G+++ A GG +SVE +D +++ W+++ + R + +
Sbjct: 193 MKTPRSMFGVAIHKGKIVIA-GGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS 251
Query: 333 LNDLLYAVGGHD---------GQSYLNSIERYDPQTNQWS 363
L LYA+GG + +N I +Y+ +W+
Sbjct: 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA 291
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Query: 2 GLADRPASPACLTHTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSP 61
G D P H+SD +LS ++ R LCDVV+ V R+ HR VL+ACS
Sbjct: 5 GGVDGPIGIPFPDHSSD-----ILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQ 59
Query: 62 YFRAMFTGELAESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLV 121
YF+ +FT +Q I + A+ L++F YT+ +TV +NV +L AA LL++
Sbjct: 60 YFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIP 119
Query: 122 EIQDICCEFLKRQL 135
+ +C + L RQ+
Sbjct: 120 AVSHVCADLLDRQI 133
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 62/112 (55%)
Query: 20 HPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEV 79
H +LS ++ R LCDVV+ V R+ HR VL+ACS YF+ +FT +Q
Sbjct: 8 HSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVY 67
Query: 80 TIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFL 131
I + A+ L++F YT+ +TV +NV +L AA LL++ + +C + L
Sbjct: 68 EIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLL 119
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 85/201 (42%), Gaps = 17/201 (8%)
Query: 276 PRTRPRKPSRRGEVL---FAVGGWCSGDA---ISSVERYDPQSSDWKIVAPMSKRRCGVG 329
P PR GE L + VGG D + SV YD S W P+ G
Sbjct: 84 PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHT 143
Query: 330 VAVLNDLLYAVGGHDG-QSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAV 388
V DL+Y +GG + LN + YDP+ +W ++AP + R+ G V DG +
Sbjct: 144 VLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWK-ELAPMQTARSLFGATVHDGRIIVA 202
Query: 389 GGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGG------SDGQ- 441
G + E Y +NKW+ R +++ L G LYAIGG G+
Sbjct: 203 AGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGEL 262
Query: 442 --SPLNTVERFDPKLNRWTAM 460
+ LN + R++ + +W +
Sbjct: 263 VPTELNDIWRYNEEEKKWEGV 283
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 7/176 (3%)
Query: 307 RYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGG---HDGQSYLNSIERYDPQTNQWS 363
++D S+W + P+ RC G+ + +Y VGG DG+ L+S+ YD + +W
Sbjct: 71 QFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG 130
Query: 364 -CDVAPTTSCRTSVGVAVLDGFLYAVGGQDG-VQCLNHVERYDPKENKWSRVAPMTTRRL 421
D P +V ++ +D +Y +GG+ +CLN + YDPK+ +W +APM T R
Sbjct: 131 ESDPLPYVVYGHTV-LSHMD-LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARS 188
Query: 422 GVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVG 477
V G + G ++ E + N+W R L VG
Sbjct: 189 LFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVG 244
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 9 SPACLTHTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFT 68
S + + S H VL ++ R+ LCDV + V ++ AHR VL+ACS YF +
Sbjct: 1 SMSVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIV 60
Query: 69 ----GELAESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQ 124
GEL + EVT++ + LI+F YT+ + + + NV + L + I+
Sbjct: 61 GQADGELNITLPEEVTVK-----GFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIE 115
Query: 125 DICCEFLK 132
+ C +FLK
Sbjct: 116 ESCFQFLK 123
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%)
Query: 19 KHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAE 78
+H VL ++ LR L DVV+ V + AH+ VL ACS F ++FT +L +
Sbjct: 11 RHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVI 70
Query: 79 VTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLK 132
+I+ + L++F YTS + + E N+ ++ A LQ+ + D C +F+K
Sbjct: 71 NLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIK 124
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 67/147 (45%)
Query: 27 EVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDD 86
E+ L + D L V ++ AH+ +L+A SP F AMF E+ ES++ V I D++
Sbjct: 164 ELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEP 223
Query: 87 VAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLDPSNCLGIRAF 146
++ F YT + LL AA L ++ +C + L L N I
Sbjct: 224 EVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILIL 283
Query: 147 ADTHSCRDLLRIADKFTQHNFQEVMES 173
AD HS L A F ++ +V+E+
Sbjct: 284 ADLHSADQLKTQAVDFINYHATDVLET 310
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Query: 19 KHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAM--FTGELAESRQ 76
+H +L +S+ R CD L + +I + +L+A SPY R + +
Sbjct: 13 QHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGST 72
Query: 77 AEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLD 136
++ + I ++++ ++ I + E +Q ++ AA LL L +++ +CCEFL+ +
Sbjct: 73 YKIELEGISVXVXREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIA 132
Query: 137 PSNCLGIRAFADTHSCRDLLRIADKFTQHNFQEV 170
NC+GIR FA + + +A ++ + +F++V
Sbjct: 133 AENCIGIRDFALHYCLHHVHYLATEYLETHFRDV 166
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Query: 8 ASPACLTHTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMF 67
+ A + S H VL ++ R+ LCDV + V ++ AHR VL+ACS YF +
Sbjct: 7 SESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRI 66
Query: 68 TG----ELAESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEI 123
G EL + EVT++ + LI+F YT+ + + + NV + L + I
Sbjct: 67 VGQTDAELTVTLPEEVTVK-----GFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNI 121
Query: 124 QDICCEFLKRQL 135
++ C +FLK +
Sbjct: 122 EESCFQFLKFKF 133
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 2/125 (1%)
Query: 8 ASPACLTHTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMF 67
++ +C+ T +H VL ++ LR L DVV+ V + AH+ VL ACS F ++F
Sbjct: 5 SADSCIQFT--RHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIF 62
Query: 68 TGELAESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDIC 127
T +L + +I+ L++F YTS + + E N+ ++ A LQ+ + D C
Sbjct: 63 TDQLKCNLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTC 122
Query: 128 CEFLK 132
+F+K
Sbjct: 123 RKFIK 127
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 59.7 bits (143), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 19 KHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAE 78
+H + VL +++ R+ LCD V AH+ VL+ACS YF+ +F Q +
Sbjct: 7 QHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD------QKD 60
Query: 79 VTIRDIDDVA-MDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDIC 127
V DI + A + ++EF YT+ +++ NV +L A LQ+ +I C
Sbjct: 61 VVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITAC 110
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 19 KHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAE 78
+H + VL +++ R+ LCD V AH+ VL+ACS YF+ +F Q +
Sbjct: 9 QHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD------QKD 62
Query: 79 VTIRDIDDVA-MDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDIC 127
V DI + A + ++EF YT+ +++ NV +L A LQ+ +I C
Sbjct: 63 VVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITAC 112
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 58/129 (44%)
Query: 27 EVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDD 86
E+ L + D L V ++ AH+ +L+A SP F AMF E+ ES++ V I D++
Sbjct: 15 ELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEP 74
Query: 87 VAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLDPSNCLGIRAF 146
++ F YT + LL AA L ++ +C + L L N I
Sbjct: 75 EVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILIL 134
Query: 147 ADTHSCRDL 155
AD HS L
Sbjct: 135 ADLHSADQL 143
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 7 PASPACLTHTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAM 66
P + S H +L ++ R+ LCDV L V ++ AHR VL+ACS YF
Sbjct: 2 PLGSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQA 61
Query: 67 FTGE----LAESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVE 122
G+ L S EVT R L++F YT+ + + N++ ++ A L++
Sbjct: 62 LVGQTKNDLVVSLPEEVTAR-----GFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHN 116
Query: 123 IQDICCEFL 131
++D C FL
Sbjct: 117 LEDSCFSFL 125
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 38 CDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTI-RDIDDVAMDNLIEFC 96
CDV + V AHR VL+A S YFR +F SR A V + + + ++ FC
Sbjct: 34 CDVSVVVKGHAFKAHRAVLAASSSYFRDLFN----NSRSAVVELPAAVQPQSFQQILSFC 89
Query: 97 YTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLKR 133
YT +++ + L+ A LQ+ EI + EF +
Sbjct: 90 YTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLK 126
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 24 VLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRD 83
VL E++ R + CD L+VG AH VL+ CS +F+ ++ S +
Sbjct: 12 VLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGGSVVLPAGFAE 71
Query: 84 IDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEF 130
I + L++F YT H+ + N +L AA L++ E ++C F
Sbjct: 72 IFGL----LLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSF 114
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 19 KHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAE 78
+H VL E++ R + CD L+VG AH VL+ CS +F++++ S
Sbjct: 6 QHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGGSVVLP 65
Query: 79 VTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEF 130
+I + L++F YT H+ + N +L AA L++ E ++C F
Sbjct: 66 AGFAEIFGL----LLDFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQSF 113
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 62/147 (42%)
Query: 27 EVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDD 86
E+ L + D L V ++ AH+ +L+A SP F A F E ES++ V I D++
Sbjct: 24 ELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRVEINDVEP 83
Query: 87 VAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLDPSNCLGIRAF 146
F YT + LL AA L ++ C + L L N I
Sbjct: 84 EVFKEXXCFIYTGKAPNLDKXADDLLAAADKYALERLKVXCEDALCSNLSVENAAEILIL 143
Query: 147 ADTHSCRDLLRIADKFTQHNFQEVMES 173
AD HS L A F ++ +V+E+
Sbjct: 144 ADLHSADQLKTQAVDFINYHATDVLET 170
>pdb|2PPI|A Chain A, Structure Of The Btb (Tramtrack And Bric A Brac) Domain Of
Human Gigaxonin
Length = 144
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 19 KHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAM--FTGELAESRQ 76
+H +L +S+ R CD L + +I + +L+A SPY R + +
Sbjct: 29 QHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGST 88
Query: 77 AEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLK 132
++ + I + M ++++ ++ I + E +Q ++ AA LL L +++ +CCEFL+
Sbjct: 89 YKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6
pdb|2VKP|B Chain B, Crystal Structure Of Btb Domain From Btbd6
Length = 109
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 45 GARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDVAMDNLIEFCYTSHITVE 104
R + AH+ VL+ S F A F G+LAE + +E+ I D++ A L+++ Y+ I +E
Sbjct: 20 ATRTVPAHKYVLAVGSSVFYAXFYGDLAEVK-SEIHIPDVEPAAFLILLKYXYSDEIDLE 78
Query: 105 ESNVQTLLPAACLLQLVEIQDICCEFLKRQL 135
V L AA + + C FL+ L
Sbjct: 79 ADTVLATLYAAKKYIVPALAKACVNFLETSL 109
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 20 HPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEV 79
HP +L + + +R LCDVV+ V +++ AHR VL+ S F +F
Sbjct: 11 HPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF-----HRNSQHY 65
Query: 80 TIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLK 132
T+ + ++E+ YT+ + + ++ LL AA +L++ +++ C + L+
Sbjct: 66 TLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLE 118
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 20 HPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEV 79
HP +L + + +R LCDVV+ V +++ AHR VL+ S F +F
Sbjct: 10 HPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF-----HRNSQHY 64
Query: 80 TIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFL 131
T+ + ++E+ YT+ + + ++ LL AA +L++ +++ C + L
Sbjct: 65 TLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKML 116
>pdb|2EQX|A Chain A, Solution Structure Of The Back Domain Of Kelch Repeat And
Btb Domain-Containing Protein 4
Length = 105
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 139 NCLGIRAFADTHSCRDLLRIADKFTQHNFQEVMESEEFLILPVAQLVDIISSDELNVRSE 198
NCL + AD HS +L A + + ++ +EEFL LP L DIIS V
Sbjct: 12 NCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISD---GVPCS 68
Query: 199 EQVFNAIMSWLKYNVSERR 217
+ AI +W+ +N ER
Sbjct: 69 QNPTEAIEAWINFNKEERE 87
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 31 LRRHRE---LCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDV 87
L + RE LCD + +G + AHR VL++ S YF A++ S D V
Sbjct: 13 LNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIY-----RSTSENNVFLDQSQV 67
Query: 88 AMD---NLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDIC 127
D L+EF YT + ++ NV+ + AA L++ E+ C
Sbjct: 68 KADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKC 110
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM I
Length = 124
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 13 LTHTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFT--GE 70
++ T ++ +L+ ++ R H CDV + V RK AH+ +LSA S YF +F+ G+
Sbjct: 9 ISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQ 68
Query: 71 LAE 73
+ E
Sbjct: 69 VVE 71
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 13 LTHTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFT--GE 70
++ T ++ +L+ ++ R H CDV + V RK AH+ +LSA S YF +F+ G+
Sbjct: 7 ISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQ 66
Query: 71 LAE 73
+ E
Sbjct: 67 VVE 69
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 325 RCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTN--QWSCDVAPTTSCRTSVGVAVLD 382
+ G G A+ ND +Y G G ++ + D Q +W+ A R A +D
Sbjct: 11 KSGTG-AIDNDTVYIGLGSAGTAWY----KLDTQAKDKKWTALAAFPGGPRDQATSAFID 65
Query: 383 GFLYAVGG----QDGV-QCLNHVERYDPKENKWSRV 413
G LY GG +G+ Q N V +Y+PK N W ++
Sbjct: 66 GNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKL 101
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 406 KENKWSRVAPMTTR-RLGVAVAVLGGFLYAIGG----SDGQSP-LNTVERFDPKLNRWTA 459
K+ KW+ +A R A + G LY GG S+G + N V +++PK N W
Sbjct: 41 KDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVK 100
Query: 460 M 460
+
Sbjct: 101 L 101
>pdb|3M5B|A Chain A, Crystal Structure Of The Btb Domain From FazfZBTB32
pdb|3M5B|B Chain B, Crystal Structure Of The Btb Domain From FazfZBTB32
Length = 119
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 30 ALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDVAM 89
A R LCD ++ VG+++ AH +VL+ S L E I
Sbjct: 23 AARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQWALGEG---------ISPSTF 73
Query: 90 DNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDIC 127
L+ F Y + ++ ++ L AA L + +++ C
Sbjct: 74 AQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEAC 111
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 40/88 (45%)
Query: 377 GVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIG 436
G+A L F V +G+Q LN++ + K+N+ + + P+ + + G L +
Sbjct: 48 GIATLSAFNTGVTTIEGIQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVS 107
Query: 437 GSDGQSPLNTVERFDPKLNRWTAMAPMS 464
G + T++ ++ T +A +S
Sbjct: 108 AIAGLQSIKTLDLTSTQITDVTPLAGLS 135
>pdb|3RZZ|A Chain A, Structure Of Hydroxyethylphoshphonate Dioxygenase Y98f
Mutant
Length = 446
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 30/129 (23%)
Query: 231 LLSPKFLVGTVGSDLLVRSDEACRDLVDEAKNYLLLPQERPLMQGPRTRPRKPSRRGEVL 290
+ S L VGS L V +D DL+D A+N+ ++ + R ++
Sbjct: 328 MASAAHLPDLVGSFLRVDADGRGADLIDHAENHYVVTEGRLTLE---------------- 371
Query: 291 FAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRC-GVGVAVLNDLLYAVGGHDG-QSY 348
W D +SVE +P S W P + R G G L + G H G Q +
Sbjct: 372 -----WDGPDGPASVE-LEPDGSAW--TGPFVRHRWHGTGTV----LKFGSGAHLGYQDW 419
Query: 349 LNSIERYDP 357
L ++P
Sbjct: 420 LELTNTFEP 428
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 377 GVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPM 416
G+ L F V +GVQ LN++ + K+N+ + +AP+
Sbjct: 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPL 81
>pdb|1VOR|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOU|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOW|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOY|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VP0|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400
Length = 198
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 18/86 (20%)
Query: 369 TTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVER-----------YDPKENKWSRVAPMT 417
T S RT V+ +Y GQ G H +R + PK + P
Sbjct: 42 TASTRTRAQVSKTGRKMY---GQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQ 98
Query: 418 TRRLGVAVAVL----GGFLYAIGGSD 439
R+LG+A+A+ GG L A+ G D
Sbjct: 99 VRQLGLAMAIASRQEGGKLVAVDGFD 124
>pdb|1PNU|C Chain C, Crystal Structure Of A Streptomycin Dependent Ribosome
From Escherichia Coli, 50s Subunit Of 70s Ribosome. This
File, 1pnu, Contains Only Molecules Of The 50s Ribosomal
Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site
Trna Are In The Pdb File 1pns.
pdb|1PNY|C Chain C, Crystal Structure Of The Wild Type Ribosome From E. Coli,
50s Subunit Of 70s Ribosome. This File, 1pny, Contains
Only Molecules Of The 50s Ribosomal Subunit. The 30s
Subunit Is In The Pdb File 1pnx
Length = 197
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 18/86 (20%)
Query: 369 TTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVER-----------YDPKENKWSRVAPMT 417
T S RT V+ +Y GQ G H +R + PK + P
Sbjct: 41 TASTRTRAQVSKTGRKMY---GQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQ 97
Query: 418 TRRLGVAVAVL----GGFLYAIGGSD 439
R+LG+A+A+ GG L A+ G D
Sbjct: 98 VRQLGLAMAIASRQEGGKLVAVDGFD 123
>pdb|1JZX|K Chain K, Structural Basis For The Interaction Of Antibiotics With
The Peptidyl Transferase Center In Eubacteria
pdb|1JZY|K Chain K, Structural Basis For The Interaction Of Antibiotics With
The Peptidyl Transferase Center In Eubacteria
pdb|1JZZ|K Chain K, Structural Basis For The Interaction Of Antibiotics With
The Peptidyl Transferase Center In Eubacteria
pdb|1K01|K Chain K, Structural Basis For The Interaction Of Antibiotics With
The Peptidyl Transferase Center In Eubacteria
pdb|1J5A|K Chain K, Structural Basis For The Interaction Of Antibiotics With
The Peptidyl Transferase Center In Eubacteria
pdb|1NKW|C Chain C, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
pdb|1SM1|C Chain C, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Quinupristin And Dalfopristin
pdb|2ZJP|C Chain C, Thiopeptide Antibiotic Nosiheptide Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|2ZJQ|C Chain C, Interaction Of L7 With L11 Induced By Microccocin Binding
To The Deinococcus Radiodurans 50s Subunit
pdb|2ZJR|C Chain C, Refined Native Structure Of The Large Ribosomal Subunit
(50s) From Deinococcus Radiodurans
pdb|3CF5|C Chain C, Thiopeptide Antibiotic Thiostrepton Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|3DLL|C Chain C, The Oxazolidinone Antibiotics Perturb The Ribosomal
Peptidyl-Transferase Center And Effect Trna Positioning
pdb|3PIO|C Chain C, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
pdb|3PIP|C Chain C, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
Length = 205
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 18/86 (20%)
Query: 369 TTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVER-----------YDPKENKWSRVAPMT 417
T S RT V+ +Y GQ G H +R + PK + P
Sbjct: 42 TASTRTRAQVSKTGRKMY---GQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQ 98
Query: 418 TRRLGVAVAVL----GGFLYAIGGSD 439
R+LG+A+A+ GG L A+ G D
Sbjct: 99 VRQLGLAMAIASRQEGGKLVAVDGFD 124
>pdb|1NWX|C Chain C, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Abt-773
pdb|1NWY|C Chain C, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Azithromycin
pdb|1XBP|C Chain C, Inhibition Of Peptide Bond Formation By Pleuromutilins:
The Structure Of The 50s Ribosomal Subunit From
Deinococcus Radiodurans In Complex With Tiamulin
Length = 204
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 18/86 (20%)
Query: 369 TTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVER-----------YDPKENKWSRVAPMT 417
T S RT V+ +Y GQ G H +R + PK + P
Sbjct: 41 TASTRTRAQVSKTGRKMY---GQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQ 97
Query: 418 TRRLGVAVAVL----GGFLYAIGGSD 439
R+LG+A+A+ GG L A+ G D
Sbjct: 98 VRQLGLAMAIASRQEGGKLVAVDGFD 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,134,340
Number of Sequences: 62578
Number of extensions: 572532
Number of successful extensions: 1611
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1426
Number of HSP's gapped (non-prelim): 79
length of query: 482
length of database: 14,973,337
effective HSP length: 103
effective length of query: 379
effective length of database: 8,527,803
effective search space: 3232037337
effective search space used: 3232037337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)