Query psy11333
Match_columns 482
No_of_seqs 268 out of 2945
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 15:42:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441|consensus 100.0 4E-82 8.7E-87 627.3 45.9 472 7-481 6-480 (571)
2 PHA02713 hypothetical protein; 100.0 8.6E-79 1.9E-83 607.2 42.3 461 15-481 3-517 (557)
3 PHA03098 kelch-like protein; P 100.0 1.3E-70 2.9E-75 554.8 42.6 441 34-480 6-491 (534)
4 PHA02790 Kelch-like protein; P 100.0 2E-69 4.3E-74 533.1 45.2 421 27-480 12-450 (480)
5 KOG4441|consensus 100.0 2.7E-51 5.9E-56 407.2 21.4 421 46-481 75-527 (571)
6 PHA02713 hypothetical protein; 100.0 1.8E-42 3.9E-47 346.2 12.7 391 58-463 78-543 (557)
7 PHA03098 kelch-like protein; P 100.0 4.3E-40 9.3E-45 332.7 21.8 439 11-468 19-526 (534)
8 PHA02790 Kelch-like protein; P 100.0 3.6E-40 7.9E-45 325.3 18.6 369 59-460 74-477 (480)
9 PLN02153 epithiospecifier prot 100.0 1E-32 2.2E-37 262.6 24.1 217 262-480 8-255 (341)
10 TIGR03548 mutarot_permut cycli 100.0 7.6E-33 1.6E-37 261.5 21.0 212 262-480 52-307 (323)
11 PLN02193 nitrile-specifier pro 100.0 9.6E-32 2.1E-36 264.8 24.2 216 261-480 151-381 (470)
12 PLN02153 epithiospecifier prot 100.0 1.3E-31 2.7E-36 255.0 22.7 192 283-475 81-311 (341)
13 TIGR03547 muta_rot_YjhT mutatr 100.0 8.6E-32 1.9E-36 257.2 21.1 214 261-480 41-325 (346)
14 PLN02193 nitrile-specifier pro 100.0 1.3E-30 2.9E-35 256.8 23.7 189 282-471 223-434 (470)
15 TIGR03547 muta_rot_YjhT mutatr 100.0 1.3E-30 2.9E-35 249.0 22.1 203 273-480 4-261 (346)
16 TIGR03548 mutarot_permut cycli 100.0 4.1E-30 9E-35 242.9 22.3 180 283-464 9-205 (323)
17 PRK14131 N-acetylneuraminic ac 100.0 2.3E-30 5E-35 248.9 20.3 203 276-480 74-347 (376)
18 KOG4350|consensus 100.0 6E-31 1.3E-35 233.7 12.9 225 19-247 26-253 (620)
19 PRK14131 N-acetylneuraminic ac 100.0 2.5E-28 5.3E-33 234.9 22.8 203 272-480 24-283 (376)
20 KOG4693|consensus 100.0 9.7E-29 2.1E-33 208.5 14.9 206 273-479 75-305 (392)
21 KOG4693|consensus 100.0 7.9E-28 1.7E-32 203.0 15.5 206 275-480 11-254 (392)
22 KOG0379|consensus 99.9 7.8E-26 1.7E-30 222.1 20.9 207 272-479 56-278 (482)
23 KOG0379|consensus 99.9 8E-24 1.7E-28 207.9 20.6 204 273-477 109-329 (482)
24 KOG1230|consensus 99.9 7.5E-23 1.6E-27 183.2 18.6 206 272-477 62-307 (521)
25 KOG2075|consensus 99.9 6.8E-23 1.5E-27 187.3 15.2 226 21-247 98-340 (521)
26 KOG1230|consensus 99.9 4.3E-21 9.4E-26 172.0 14.0 199 260-460 107-347 (521)
27 KOG4682|consensus 99.8 3.4E-19 7.3E-24 159.3 13.7 181 29-210 61-246 (488)
28 KOG4152|consensus 99.8 8.5E-19 1.8E-23 161.3 14.8 196 284-480 88-336 (830)
29 KOG4152|consensus 99.8 2.5E-18 5.5E-23 158.2 12.7 214 262-480 18-268 (830)
30 PF00651 BTB: BTB/POZ domain; 99.8 3E-18 6.5E-23 135.3 8.9 107 28-134 1-110 (111)
31 KOG4591|consensus 99.8 2E-18 4.4E-23 139.4 7.8 178 12-193 41-223 (280)
32 COG3055 Uncharacterized protei 99.6 5.6E-15 1.2E-19 131.4 15.5 214 260-479 69-352 (381)
33 smart00225 BTB Broad-Complex, 99.6 6E-15 1.3E-19 111.5 6.1 90 39-128 1-90 (90)
34 COG3055 Uncharacterized protei 99.5 3.6E-13 7.8E-18 120.0 15.4 183 284-470 43-272 (381)
35 PF07707 BACK: BTB And C-termi 99.5 2.6E-14 5.6E-19 110.9 7.4 102 140-241 1-102 (103)
36 KOG0783|consensus 99.4 1.4E-12 3.1E-17 127.1 9.5 151 35-185 708-865 (1267)
37 PF13964 Kelch_6: Kelch motif 99.4 1.6E-12 3.5E-17 85.4 6.5 49 419-467 1-50 (50)
38 smart00875 BACK BTB And C-term 99.4 6.5E-12 1.4E-16 97.1 10.9 99 140-239 1-99 (101)
39 PF13964 Kelch_6: Kelch motif 99.4 2E-12 4.4E-17 84.9 6.3 49 324-373 1-50 (50)
40 KOG2437|consensus 99.2 1.1E-11 2.4E-16 114.7 6.6 180 273-452 257-470 (723)
41 KOG2437|consensus 99.1 5.1E-11 1.1E-15 110.5 5.9 141 322-462 258-421 (723)
42 PF01344 Kelch_1: Kelch motif; 99.1 5.2E-11 1.1E-15 77.2 4.0 46 324-370 1-47 (47)
43 PF01344 Kelch_1: Kelch motif; 99.1 8.2E-11 1.8E-15 76.3 4.4 46 372-417 1-47 (47)
44 PF13415 Kelch_3: Galactose ox 99.1 2.4E-10 5.3E-15 74.5 5.6 47 429-475 1-49 (49)
45 smart00612 Kelch Kelch domain. 99.0 6.6E-10 1.4E-14 72.2 5.2 47 431-477 1-47 (47)
46 PF07646 Kelch_2: Kelch motif; 99.0 1.6E-09 3.6E-14 70.5 6.3 46 419-464 1-49 (49)
47 PF07646 Kelch_2: Kelch motif; 99.0 1.6E-09 3.4E-14 70.6 6.2 46 324-370 1-49 (49)
48 PF13415 Kelch_3: Galactose ox 99.0 1.4E-09 3E-14 70.9 5.8 47 382-428 1-49 (49)
49 smart00612 Kelch Kelch domain. 98.9 2E-09 4.3E-14 69.8 5.2 47 384-430 1-47 (47)
50 PF13418 Kelch_4: Galactose ox 98.9 1.5E-09 3.2E-14 70.9 3.5 47 419-465 1-49 (49)
51 PF13418 Kelch_4: Galactose ox 98.8 3.9E-09 8.6E-14 68.9 3.7 46 324-370 1-48 (49)
52 PF07250 Glyoxal_oxid_N: Glyox 98.6 5E-07 1.1E-11 79.6 12.3 154 304-470 47-216 (243)
53 PLN02772 guanylate kinase 98.6 2.6E-07 5.6E-12 86.5 10.8 83 370-454 22-109 (398)
54 PLN02772 guanylate kinase 98.5 9.8E-07 2.1E-11 82.7 10.9 83 322-406 22-108 (398)
55 TIGR01640 F_box_assoc_1 F-box 98.5 2.7E-05 5.8E-10 69.9 19.6 165 286-460 4-184 (230)
56 PF13854 Kelch_5: Kelch motif 98.5 4.5E-07 9.8E-12 56.6 5.4 39 416-454 1-41 (42)
57 PF13854 Kelch_5: Kelch motif 98.5 4.4E-07 9.6E-12 56.6 5.2 39 321-359 1-41 (42)
58 KOG0783|consensus 98.5 7.4E-07 1.6E-11 88.2 9.2 107 24-130 541-684 (1267)
59 PF07250 Glyoxal_oxid_N: Glyox 98.2 4.8E-05 1E-09 67.2 14.6 128 278-418 68-210 (243)
60 TIGR01640 F_box_assoc_1 F-box 98.2 5.2E-05 1.1E-09 68.0 14.3 139 333-480 4-157 (230)
61 KOG0511|consensus 98.1 1.7E-06 3.7E-11 78.1 3.3 131 47-178 301-441 (516)
62 KOG2838|consensus 97.8 1.8E-05 4E-10 68.3 4.1 105 22-126 115-224 (401)
63 PF03089 RAG2: Recombination a 97.8 0.0036 7.8E-08 55.2 17.4 153 288-440 38-230 (337)
64 KOG2716|consensus 97.7 0.00013 2.8E-09 63.1 6.8 95 40-134 7-104 (230)
65 PF07893 DUF1668: Protein of u 97.5 0.0047 1E-07 58.6 15.8 118 333-462 75-216 (342)
66 KOG2838|consensus 97.5 3.3E-05 7.2E-10 66.8 0.5 114 23-136 221-389 (401)
67 PF07893 DUF1668: Protein of u 97.2 0.014 3E-07 55.5 15.6 122 286-419 75-220 (342)
68 PF12768 Rax2: Cortical protei 97.0 0.013 2.8E-07 53.4 12.6 108 349-462 15-130 (281)
69 PF02214 BTB_2: BTB/POZ domain 97.0 0.00056 1.2E-08 51.5 2.8 87 40-127 1-94 (94)
70 PF07707 BACK: BTB And C-termi 97.0 0.0011 2.4E-08 50.8 4.6 82 108-189 1-103 (103)
71 PF12768 Rax2: Cortical protei 96.9 0.017 3.7E-07 52.6 11.7 120 291-415 2-130 (281)
72 KOG3473|consensus 96.7 0.0063 1.4E-07 43.9 5.7 80 40-120 19-112 (112)
73 PRK11138 outer membrane biogen 96.5 0.4 8.6E-06 46.9 19.8 161 285-479 203-379 (394)
74 PRK11138 outer membrane biogen 96.5 0.52 1.1E-05 46.1 20.0 146 284-459 157-320 (394)
75 PF11822 DUF3342: Domain of un 96.4 0.003 6.5E-08 57.4 3.6 90 47-136 14-105 (317)
76 PF02191 OLF: Olfactomedin-lik 96.3 0.19 4E-06 45.2 14.5 179 286-478 29-229 (250)
77 PF08450 SGL: SMP-30/Gluconola 96.3 0.16 3.5E-06 45.9 14.4 170 287-480 51-237 (246)
78 PF13360 PQQ_2: PQQ-like domai 96.2 0.83 1.8E-05 40.8 19.4 147 286-460 35-200 (238)
79 KOG1987|consensus 96.1 0.0047 1E-07 57.8 3.3 120 46-165 109-231 (297)
80 smart00512 Skp1 Found in Skp1 96.0 0.0073 1.6E-07 46.3 3.5 59 40-99 4-64 (104)
81 PF03089 RAG2: Recombination a 96.0 0.11 2.4E-06 46.2 10.9 103 337-439 41-174 (337)
82 smart00284 OLF Olfactomedin-li 95.8 1 2.2E-05 40.3 16.5 181 287-477 34-233 (255)
83 PF03931 Skp1_POZ: Skp1 family 95.8 0.023 5.1E-07 38.7 4.8 56 40-98 3-59 (62)
84 KOG1665|consensus 95.7 0.046 9.9E-07 46.5 7.2 91 39-129 10-105 (302)
85 TIGR03300 assembly_YfgL outer 95.7 1.8 3.8E-05 42.0 19.6 127 304-456 201-341 (377)
86 PF05096 Glu_cyclase_2: Glutam 95.6 0.29 6.3E-06 43.8 12.3 109 329-454 49-158 (264)
87 KOG4350|consensus 95.4 0.02 4.2E-07 53.1 4.3 102 103-206 145-263 (620)
88 KOG2715|consensus 95.4 0.25 5.4E-06 40.0 9.8 102 34-135 17-122 (210)
89 PF13360 PQQ_2: PQQ-like domai 95.4 1.9 4.1E-05 38.4 18.5 136 304-463 4-152 (238)
90 PF05096 Glu_cyclase_2: Glutam 95.3 0.27 5.8E-06 44.1 11.1 146 287-456 55-206 (264)
91 TIGR03300 assembly_YfgL outer 95.3 3.1 6.6E-05 40.3 19.6 144 286-459 144-305 (377)
92 smart00875 BACK BTB And C-term 95.2 0.037 8E-07 42.0 4.9 80 108-187 1-100 (101)
93 KOG1724|consensus 95.2 0.037 8.1E-07 45.6 4.9 91 45-136 13-128 (162)
94 cd00094 HX Hemopexin-like repe 95.1 2 4.4E-05 37.1 16.0 140 286-456 15-178 (194)
95 PRK00178 tolB translocation pr 95.0 3.2 7E-05 41.0 19.2 145 303-462 223-372 (430)
96 PRK04792 tolB translocation pr 94.8 3.3 7.1E-05 41.2 18.5 146 303-461 242-390 (448)
97 TIGR02800 propeller_TolB tol-p 94.6 3.8 8.3E-05 40.2 18.6 146 303-461 214-362 (417)
98 KOG2714|consensus 94.4 0.11 2.4E-06 48.9 6.3 86 40-125 13-102 (465)
99 TIGR03866 PQQ_ABC_repeats PQQ- 94.3 2.7 5.9E-05 38.7 16.0 101 289-409 2-106 (300)
100 PF03178 CPSF_A: CPSF A subuni 93.9 1.5 3.3E-05 41.4 13.5 114 350-475 62-181 (321)
101 PRK04922 tolB translocation pr 93.9 7.4 0.00016 38.6 19.2 145 303-461 228-376 (433)
102 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.8 6.1 0.00013 40.2 18.2 118 283-412 65-197 (527)
103 PTZ00421 coronin; Provisional 93.8 8.2 0.00018 38.8 18.8 153 288-459 138-296 (493)
104 PF08450 SGL: SMP-30/Gluconola 93.7 3.6 7.7E-05 37.1 15.0 142 287-454 11-165 (246)
105 PF03178 CPSF_A: CPSF A subuni 93.6 1.6 3.4E-05 41.3 12.9 139 288-438 42-192 (321)
106 PF08268 FBA_3: F-box associat 93.2 1.1 2.4E-05 35.8 9.6 82 332-414 3-88 (129)
107 cd00216 PQQ_DH Dehydrogenases 93.0 10 0.00022 38.2 18.3 116 283-412 57-191 (488)
108 KOG2055|consensus 92.8 4 8.6E-05 39.2 13.6 148 287-455 224-376 (514)
109 COG4257 Vgb Streptogramin lyas 92.7 6.1 0.00013 35.5 13.7 165 287-478 158-327 (353)
110 PRK05137 tolB translocation pr 92.5 12 0.00026 37.1 18.4 146 303-460 226-373 (435)
111 KOG0310|consensus 92.3 4.1 8.9E-05 39.2 13.0 133 286-440 164-301 (487)
112 KOG0310|consensus 92.0 12 0.00025 36.3 15.7 142 286-453 121-268 (487)
113 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.6 5.7 0.00012 40.4 14.5 118 329-459 64-197 (527)
114 PLN03215 ascorbic acid mannose 91.1 13 0.00029 35.5 15.2 98 312-418 189-306 (373)
115 smart00284 OLF Olfactomedin-li 91.0 9.6 0.00021 34.3 13.5 133 334-476 34-186 (255)
116 PRK04043 tolB translocation pr 90.7 18 0.0004 35.6 18.3 149 303-462 213-366 (419)
117 KOG2055|consensus 90.6 6 0.00013 38.0 12.2 128 290-438 272-407 (514)
118 PF08268 FBA_3: F-box associat 90.5 3.2 7E-05 33.0 9.4 80 380-460 3-87 (129)
119 PRK03629 tolB translocation pr 90.2 20 0.00044 35.4 18.9 147 303-461 223-371 (429)
120 PRK11028 6-phosphogluconolacto 89.6 19 0.00041 34.1 16.0 146 288-454 2-157 (330)
121 PF02897 Peptidase_S9_N: Proly 89.5 15 0.00033 36.0 15.3 184 287-477 134-337 (414)
122 TIGR03866 PQQ_ABC_repeats PQQ- 89.3 6.7 0.00015 36.0 12.2 100 336-455 2-105 (300)
123 PRK00178 tolB translocation pr 88.5 27 0.00058 34.5 18.1 103 350-461 223-327 (430)
124 KOG0289|consensus 88.1 17 0.00037 34.8 13.1 119 327-464 350-473 (506)
125 cd00200 WD40 WD40 domain, foun 88.1 19 0.00041 32.1 15.4 142 288-454 21-166 (289)
126 PRK04792 tolB translocation pr 87.7 32 0.00068 34.3 18.8 147 302-461 197-346 (448)
127 KOG2321|consensus 87.5 5.7 0.00012 39.3 10.0 117 321-455 130-260 (703)
128 PTZ00420 coronin; Provisional 87.0 39 0.00085 34.6 18.7 153 288-460 138-300 (568)
129 KOG0511|consensus 86.7 0.17 3.7E-06 46.7 -0.5 86 38-125 150-236 (516)
130 KOG0316|consensus 86.6 22 0.00047 31.3 13.5 104 332-456 68-176 (307)
131 COG1520 FOG: WD40-like repeat 86.6 32 0.00069 33.2 17.0 152 284-459 65-225 (370)
132 TIGR02800 propeller_TolB tol-p 86.5 34 0.00074 33.5 17.7 149 301-461 168-318 (417)
133 PRK05137 tolB translocation pr 86.3 37 0.0008 33.7 18.0 146 302-460 181-329 (435)
134 cd00094 HX Hemopexin-like repe 85.9 16 0.00034 31.6 11.4 101 287-409 62-178 (194)
135 KOG0649|consensus 85.9 24 0.00052 31.2 12.2 111 314-438 100-226 (325)
136 KOG1332|consensus 85.8 9.7 0.00021 33.6 9.5 104 336-463 176-297 (299)
137 KOG1036|consensus 85.7 28 0.00062 31.8 14.6 153 304-479 36-201 (323)
138 PLN02919 haloacid dehalogenase 85.1 70 0.0015 35.9 18.3 107 335-456 752-891 (1057)
139 PF02897 Peptidase_S9_N: Proly 84.6 43 0.00092 32.9 16.7 148 302-460 251-411 (414)
140 PRK13684 Ycf48-like protein; P 84.4 38 0.00083 32.2 17.5 152 304-476 153-312 (334)
141 cd00200 WD40 WD40 domain, foun 84.3 30 0.00064 30.8 15.3 133 303-455 73-209 (289)
142 PLN00181 protein SPA1-RELATED; 84.2 66 0.0014 34.8 17.7 98 334-453 587-690 (793)
143 PRK02889 tolB translocation pr 83.1 50 0.0011 32.6 18.7 145 303-461 220-368 (427)
144 KOG1036|consensus 83.0 38 0.00081 31.0 13.1 92 303-409 75-166 (323)
145 PLN00181 protein SPA1-RELATED; 82.3 44 0.00096 36.2 15.3 101 335-454 545-649 (793)
146 PF02191 OLF: Olfactomedin-lik 80.6 44 0.00095 30.2 15.2 133 299-436 85-237 (250)
147 KOG3840|consensus 80.4 5.9 0.00013 35.8 6.4 88 34-121 92-185 (438)
148 KOG0281|consensus 79.9 9.2 0.0002 35.4 7.5 93 333-440 328-420 (499)
149 PRK04922 tolB translocation pr 79.9 66 0.0014 31.8 17.6 103 350-461 228-332 (433)
150 PF01466 Skp1: Skp1 family, di 79.0 2.4 5.1E-05 30.4 3.0 38 102-139 10-47 (78)
151 KOG0318|consensus 78.4 20 0.00044 35.2 9.7 104 333-453 453-560 (603)
152 PF09910 DUF2139: Uncharacteri 78.3 55 0.0012 30.0 14.6 134 316-460 26-190 (339)
153 PTZ00421 coronin; Provisional 78.3 80 0.0017 31.9 18.3 107 335-454 138-246 (493)
154 COG1520 FOG: WD40-like repeat 78.1 67 0.0015 30.9 16.2 156 287-460 111-277 (370)
155 PLN02919 haloacid dehalogenase 77.7 1.3E+02 0.0028 33.9 18.3 118 329-461 687-841 (1057)
156 COG5201 SKP1 SCF ubiquitin lig 77.5 11 0.00024 29.3 6.2 94 40-136 4-123 (158)
157 PF11822 DUF3342: Domain of un 77.4 3 6.5E-05 38.4 3.8 65 125-189 59-127 (317)
158 KOG2723|consensus 77.3 8.4 0.00018 33.7 6.3 93 36-128 6-103 (221)
159 KOG0263|consensus 76.9 75 0.0016 33.0 13.6 106 330-453 541-649 (707)
160 cd00216 PQQ_DH Dehydrogenases 76.2 92 0.002 31.5 19.7 71 288-365 111-192 (488)
161 KOG0316|consensus 76.1 55 0.0012 28.9 10.7 115 350-477 39-155 (307)
162 KOG2321|consensus 75.6 26 0.00056 35.0 9.7 62 287-361 145-208 (703)
163 COG4257 Vgb Streptogramin lyas 74.8 67 0.0014 29.2 12.0 118 282-414 194-313 (353)
164 KOG0278|consensus 73.4 68 0.0015 28.6 11.1 121 303-440 165-289 (334)
165 KOG1332|consensus 73.1 43 0.00093 29.7 9.4 55 355-415 240-296 (299)
166 TIGR03074 PQQ_membr_DH membran 73.1 1.4E+02 0.003 32.1 19.2 32 283-320 190-223 (764)
167 PF09910 DUF2139: Uncharacteri 72.9 78 0.0017 29.1 13.6 95 287-388 117-219 (339)
168 KOG0315|consensus 71.6 75 0.0016 28.4 12.8 145 286-454 50-198 (311)
169 TIGR02658 TTQ_MADH_Hv methylam 71.3 98 0.0021 29.6 15.8 118 287-412 12-142 (352)
170 PF10282 Lactonase: Lactonase, 71.1 98 0.0021 29.5 17.3 155 287-461 155-332 (345)
171 PRK03629 tolB translocation pr 70.6 1.1E+02 0.0025 30.1 18.8 141 303-455 267-408 (429)
172 KOG0649|consensus 69.7 82 0.0018 28.0 13.8 154 262-436 100-263 (325)
173 KOG3545|consensus 69.5 84 0.0018 28.1 11.5 165 287-467 30-215 (249)
174 KOG1898|consensus 68.9 1.8E+02 0.004 31.8 15.3 161 301-473 851-1026(1205)
175 PF12217 End_beta_propel: Cata 67.9 56 0.0012 29.3 9.0 65 327-391 193-258 (367)
176 COG4880 Secreted protein conta 67.8 78 0.0017 30.6 10.6 59 298-360 401-459 (603)
177 KOG0266|consensus 67.1 66 0.0014 32.1 11.1 105 334-456 214-321 (456)
178 KOG0308|consensus 66.9 60 0.0013 33.0 10.1 94 350-455 95-203 (735)
179 PLN03215 ascorbic acid mannose 66.8 58 0.0013 31.3 9.8 101 352-464 184-305 (373)
180 KOG0282|consensus 66.3 34 0.00074 33.3 8.1 119 333-470 225-358 (503)
181 PRK13684 Ycf48-like protein; P 66.2 1.2E+02 0.0026 28.8 14.4 119 305-437 111-233 (334)
182 KOG0289|consensus 64.2 1.4E+02 0.0031 28.9 13.7 111 304-428 370-484 (506)
183 KOG0291|consensus 64.1 1.9E+02 0.0042 30.3 15.3 135 288-439 319-456 (893)
184 PRK01742 tolB translocation pr 64.0 1.6E+02 0.0034 29.2 17.1 138 303-460 228-368 (429)
185 KOG0279|consensus 62.8 1.2E+02 0.0026 27.6 12.9 102 335-455 162-264 (315)
186 KOG4378|consensus 62.6 1.6E+02 0.0034 29.3 11.6 101 334-454 176-281 (673)
187 KOG0296|consensus 62.0 1.5E+02 0.0031 28.2 14.8 143 287-456 75-223 (399)
188 PF14583 Pectate_lyase22: Olig 61.6 61 0.0013 31.2 8.9 134 300-439 165-303 (386)
189 KOG2048|consensus 61.0 2E+02 0.0044 29.6 14.6 53 302-361 46-101 (691)
190 PRK02889 tolB translocation pr 60.4 1.8E+02 0.0039 28.7 16.7 147 302-460 175-323 (427)
191 PF13088 BNR_2: BNR repeat-lik 60.1 1.3E+02 0.0028 27.3 11.0 191 286-480 57-274 (275)
192 PF02239 Cytochrom_D1: Cytochr 59.6 98 0.0021 29.9 10.3 151 287-457 48-206 (369)
193 KOG0291|consensus 59.5 2.3E+02 0.0051 29.7 16.2 142 286-452 360-507 (893)
194 KOG0266|consensus 58.8 2E+02 0.0043 28.7 16.0 92 303-409 225-321 (456)
195 KOG0274|consensus 58.7 1.7E+02 0.0037 29.9 12.2 131 304-455 352-484 (537)
196 PRK04043 tolB translocation pr 57.7 2E+02 0.0043 28.4 18.1 147 303-461 257-408 (419)
197 KOG4682|consensus 57.7 2.9 6.2E-05 39.4 -0.5 76 61-136 126-203 (488)
198 PF14870 PSII_BNR: Photosynthe 56.3 1.7E+02 0.0038 27.3 13.8 132 287-436 71-204 (302)
199 PTZ00420 coronin; Provisional 55.7 2.5E+02 0.0055 29.0 15.8 104 335-455 87-199 (568)
200 KOG3545|consensus 55.6 1.5E+02 0.0033 26.5 12.6 149 304-475 11-179 (249)
201 KOG1778|consensus 54.8 6.1 0.00013 36.8 1.1 131 45-176 34-167 (319)
202 KOG0315|consensus 54.7 1.3E+02 0.0028 27.0 8.9 93 336-440 11-105 (311)
203 KOG0286|consensus 54.6 1.8E+02 0.0038 26.8 15.9 147 286-455 107-261 (343)
204 KOG0281|consensus 52.2 2.1E+02 0.0045 27.0 10.9 39 399-439 341-379 (499)
205 PF10282 Lactonase: Lactonase, 52.0 1E+02 0.0023 29.3 9.2 108 339-455 3-119 (345)
206 KOG4378|consensus 51.4 1.5E+02 0.0033 29.3 9.6 51 399-456 188-242 (673)
207 PF13570 PQQ_3: PQQ-like domai 50.1 49 0.0011 19.7 4.4 25 424-454 16-40 (40)
208 PRK11028 6-phosphogluconolacto 50.0 2.2E+02 0.0049 26.6 19.5 162 287-468 137-321 (330)
209 TIGR03074 PQQ_membr_DH membran 49.5 3.7E+02 0.008 29.0 14.7 31 329-365 189-221 (764)
210 KOG2048|consensus 49.2 3.2E+02 0.007 28.2 14.4 116 284-414 390-513 (691)
211 KOG0308|consensus 49.0 2.7E+02 0.0058 28.7 11.2 67 285-361 127-204 (735)
212 PF03000 NPH3: NPH3 family; I 47.9 1.2E+02 0.0025 27.6 8.1 146 85-233 69-254 (258)
213 PF14870 PSII_BNR: Photosynthe 47.9 2.4E+02 0.0052 26.4 15.6 132 311-461 4-140 (302)
214 KOG4649|consensus 46.3 2.3E+02 0.005 25.7 12.4 91 302-409 32-126 (354)
215 KOG1446|consensus 46.2 2.5E+02 0.0053 26.0 13.6 56 303-363 80-135 (311)
216 COG3823 Glutamine cyclotransfe 46.2 2E+02 0.0043 25.2 8.6 97 329-438 50-149 (262)
217 PF12217 End_beta_propel: Cata 44.7 2.4E+02 0.0052 25.5 11.7 154 285-438 82-258 (367)
218 PF06433 Me-amine-dh_H: Methyl 44.5 57 0.0012 30.8 5.7 140 288-437 3-155 (342)
219 PRK10115 protease 2; Provision 44.3 4.2E+02 0.0091 28.2 19.1 168 286-463 136-312 (686)
220 KOG0640|consensus 44.3 2.6E+02 0.0056 26.0 9.4 105 287-409 227-338 (430)
221 PRK10115 protease 2; Provision 44.3 4.2E+02 0.0091 28.2 18.6 150 302-462 246-403 (686)
222 KOG0318|consensus 43.8 3.5E+02 0.0076 27.1 12.5 103 284-406 451-560 (603)
223 PF13088 BNR_2: BNR repeat-lik 43.5 2.1E+02 0.0047 25.8 9.6 145 287-434 118-275 (275)
224 KOG4649|consensus 43.5 2.5E+02 0.0055 25.4 10.0 90 350-456 33-126 (354)
225 KOG0278|consensus 41.7 2.6E+02 0.0057 25.1 9.7 92 350-455 165-256 (334)
226 KOG0286|consensus 41.2 2.9E+02 0.0063 25.5 12.4 96 333-440 107-209 (343)
227 COG3386 Gluconolactonase [Carb 39.9 3.2E+02 0.007 25.6 14.8 159 305-478 87-265 (307)
228 PF06433 Me-amine-dh_H: Methyl 39.5 3.4E+02 0.0074 25.8 10.0 154 287-456 106-280 (342)
229 KOG0292|consensus 39.3 5.4E+02 0.012 28.0 13.8 131 288-456 218-351 (1202)
230 PF14781 BBS2_N: Ciliary BBSom 38.8 2.1E+02 0.0044 23.0 11.6 65 383-459 64-133 (136)
231 KOG3637|consensus 38.3 6.2E+02 0.014 28.5 15.4 157 324-481 210-398 (1030)
232 KOG0276|consensus 38.2 1.6E+02 0.0036 30.0 7.9 80 308-394 161-250 (794)
233 PF08662 eIF2A: Eukaryotic tra 37.7 2.6E+02 0.0057 23.9 9.9 93 334-438 71-163 (194)
234 KOG0640|consensus 35.8 3.7E+02 0.0079 25.1 9.7 84 350-439 238-326 (430)
235 PF02239 Cytochrom_D1: Cytochr 35.4 4.2E+02 0.0091 25.6 13.0 102 287-409 5-111 (369)
236 KOG0265|consensus 35.0 3.7E+02 0.0081 24.9 12.1 60 287-363 58-125 (338)
237 COG0823 TolB Periplasmic compo 34.4 4.7E+02 0.01 25.9 14.0 148 303-461 218-367 (425)
238 PRK01742 tolB translocation pr 34.3 4.6E+02 0.01 25.8 17.5 97 350-455 228-326 (429)
239 PF08662 eIF2A: Eukaryotic tra 33.5 3.1E+02 0.0067 23.5 10.2 92 287-390 71-162 (194)
240 PF14781 BBS2_N: Ciliary BBSom 33.3 2.6E+02 0.0055 22.5 7.8 58 335-408 64-127 (136)
241 COG3823 Glutamine cyclotransfe 32.0 3.2E+02 0.007 24.0 7.7 60 376-439 49-110 (262)
242 KOG0279|consensus 31.7 4.1E+02 0.0089 24.4 14.2 93 334-441 116-215 (315)
243 KOG0322|consensus 31.3 3.3E+02 0.0071 24.8 7.9 27 427-463 260-286 (323)
244 KOG0306|consensus 30.2 4.7E+02 0.01 27.7 9.8 65 329-407 378-443 (888)
245 PF07734 FBA_1: F-box associat 29.8 3.2E+02 0.007 22.5 8.8 80 379-460 2-90 (164)
246 KOG0272|consensus 29.1 5.1E+02 0.011 25.2 9.2 136 308-463 288-426 (459)
247 KOG0296|consensus 27.7 5.5E+02 0.012 24.5 14.2 69 334-413 75-145 (399)
248 COG0823 TolB Periplasmic compo 27.4 3.8E+02 0.0082 26.5 8.7 107 301-414 260-367 (425)
249 PF05262 Borrelia_P83: Borreli 27.1 4.4E+02 0.0096 26.5 9.0 88 298-389 370-457 (489)
250 KOG4591|consensus 26.3 72 0.0016 27.2 2.9 52 85-136 147-199 (280)
251 KOG0639|consensus 25.6 2.3E+02 0.0049 28.2 6.4 107 287-409 476-584 (705)
252 KOG0319|consensus 24.2 8.7E+02 0.019 25.7 11.7 138 285-440 472-611 (775)
253 PF00651 BTB: BTB/POZ domain; 23.9 1.5E+02 0.0033 22.1 4.5 30 137-166 81-110 (111)
254 KOG3881|consensus 23.7 6.7E+02 0.014 24.2 12.6 150 287-455 160-322 (412)
255 KOG0271|consensus 23.7 4.4E+02 0.0096 25.3 7.7 95 326-434 112-231 (480)
256 KOG1538|consensus 23.7 2.5E+02 0.0055 29.1 6.6 95 287-390 24-151 (1081)
257 KOG0274|consensus 23.2 8.3E+02 0.018 25.1 15.3 109 331-459 337-447 (537)
258 COG3391 Uncharacterized conser 22.8 7E+02 0.015 24.1 16.3 150 286-455 84-241 (381)
259 KOG1517|consensus 22.6 1.1E+03 0.024 26.4 11.7 77 315-406 1154-1239(1387)
260 KOG0285|consensus 21.3 7.3E+02 0.016 23.8 8.9 65 334-410 162-227 (460)
261 PF07734 FBA_1: F-box associat 21.1 4.8E+02 0.01 21.5 16.6 127 331-461 2-147 (164)
262 KOG0263|consensus 20.6 8.9E+02 0.019 25.6 9.8 60 334-406 588-649 (707)
263 PF07433 DUF1513: Protein of u 20.5 7.1E+02 0.015 23.3 11.3 110 322-438 2-120 (305)
264 KOG1517|consensus 20.2 1.3E+03 0.027 26.1 14.8 101 334-452 1122-1238(1387)
265 KOG1538|consensus 20.2 9E+02 0.02 25.4 9.5 97 334-440 24-154 (1081)
No 1
>KOG4441|consensus
Probab=100.00 E-value=4e-82 Score=627.27 Aligned_cols=472 Identities=54% Similarity=0.921 Sum_probs=451.2
Q ss_pred CCCCCceeeecCCcHHHHHHHHHHHHhcCCceeEEEEeCCeEEeceeEEeeccCHHHHHHhcCCCCcCccceEEEccCCH
Q psy11333 7 PASPACLTHTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDD 86 (482)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~~i~l~~~~~ 86 (482)
.....+..|....|...+++.|+.|++.+.+|||++.+++++|+|||.||++.|+||++||+++++|+.+++|.+.++++
T Consensus 6 ~~~~~~~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~ 85 (571)
T KOG4441|consen 6 EIFNSTSEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDP 85 (571)
T ss_pred cccccccccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCH
Confidence 34446678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCeeeeccccHhhHHHHhcccChhhHHHHHHHHHhccCCCCCHHHHHHHHhhCCCHHHHHHHHHHHHHh
Q psy11333 87 VAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLDPSNCLGIRAFADTHSCRDLLRIADKFTQHN 166 (482)
Q Consensus 87 ~~~~~~l~~~y~~~~~~~~~~~~~ll~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~i~~~ 166 (482)
..++.+++|+|++.+.++.+|+.+++.+|++||++++.+.|.+|+..+++++||+.+..+|+.++|.+|.+.+..|+..|
T Consensus 86 ~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~ 165 (571)
T KOG4441|consen 86 ETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQH 165 (571)
T ss_pred HHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccCCHHHHhHhhcCCCcccCChHHHHHHHHHHHhcChhHHHHHHHHhhccccCCCCChhhHhhcccCccc
Q psy11333 167 FQEVMESEEFLILPVAQLVDIISSDELNVRSEEQVFNAIMSWLKYNVSERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLL 246 (482)
Q Consensus 167 ~~~l~~~~~f~~l~~~~l~~il~~~~l~~~~e~~v~~~~~~wi~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~~~~~~ 246 (482)
|.++.++++|..|+.+.|.++++++.+++.+|..+|++++.|++++...|..+++.+++++|++.+++.+|.+.+...++
T Consensus 166 F~~v~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~~l~~~v~~~~~ 245 (571)
T KOG4441|consen 166 FAEVSKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEEREEHLPALLEAVRLPLLPPQFLVEIVESEPL 245 (571)
T ss_pred HHHHhccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHhcCccCCCHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999888888
Q ss_pred ccCChhhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCcEEEEeccccC-CCCCceeEEEeCCCCCeeeccCCCCCC
Q psy11333 247 VRSDEACRDLVDEAKNYLLLPQERPLMQGPRTRPRKPSRRGEVLFAVGGWCS-GDAISSVERYDPQSSDWKIVAPMSKRR 325 (482)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GG~~~-~~~~~~~~~~d~~~~~W~~~~~~~~~~ 325 (482)
+.....|.+++.++.+|+.++..++..+.+|..++. ...+.||++||... ....+.++.|||.+++|..+++||.+|
T Consensus 246 ~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~--~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r 323 (571)
T KOG4441|consen 246 IKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRR--SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPR 323 (571)
T ss_pred hccCHHHHHHHHHHHHHhhCcccCccccCCCcccCc--CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccc
Confidence 888899999999999999999876667778877775 34689999999985 678899999999999999999999999
Q ss_pred CceeEEEECCEEEEEecCC-CCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEe
Q psy11333 326 CGVGVAVLNDLLYAVGGHD-GQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYD 404 (482)
Q Consensus 326 ~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd 404 (482)
..+++++++|+||++||.+ +....+++++|||.+++|+.+ ++|+.+|..+++++++|.||++||.++....+++++||
T Consensus 324 ~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~-a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YD 402 (571)
T KOG4441|consen 324 CRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV-APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYD 402 (571)
T ss_pred ccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc-CCccCccccceeEEECCEEEEEeccccccccccEEEec
Confidence 9999999999999999999 677889999999999999999 99999999999999999999999999888899999999
Q ss_pred CCCCceeecCCCCCCccceEEEEECCEEEEEcCCCCCC-CCCeEEEEeCCCCceeecCCCCcCCCceeEEEEcCCCCC
Q psy11333 405 PKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQS-PLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVGDNGA 481 (482)
Q Consensus 405 ~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~~~~y~~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~ 481 (482)
|.+++|+.+++|+.+|+++++++++|+||++||.++.. .++++++|||.+++|+.+++|+.+|.++++++++++|++
T Consensus 403 p~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYv 480 (571)
T KOG4441|consen 403 PVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYV 480 (571)
T ss_pred CCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEE
Confidence 99999999999999999999999999999999998877 899999999999999999999999999999999999875
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=8.6e-79 Score=607.23 Aligned_cols=461 Identities=22% Similarity=0.379 Sum_probs=402.6
Q ss_pred eecCCcHHHHHHHHHHHHhcCCceeEEEEeC-CeEEeceeEEeeccCHHHHHHhcCCCCcCc-cceEEEccCCHHHHHHH
Q psy11333 15 HTSDKHPRVVLSEVSALRRHRELCDVVLNVG-ARKIFAHRVVLSACSPYFRAMFTGELAESR-QAEVTIRDIDDVAMDNL 92 (482)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~Dv~i~~~-~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~-~~~i~l~~~~~~~~~~~ 92 (482)
+.+..|...++..|++|+.++.+|||+|.++ +++|+|||.||+++|+||++||++++.|.. ++.|.|.++++.+|+.+
T Consensus 3 ~~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~l 82 (557)
T PHA02713 3 IDDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNI 82 (557)
T ss_pred cchhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHH
Confidence 4567889999999999999999999999998 899999999999999999999999999864 77899999999999999
Q ss_pred HHHhhcCeeeeccccHhhHHHHhcccChhhHHHHHHHHHhccCCCCCHHHHHHHHhhCCCHHHHHHHHHHHHHhHHHHhc
Q psy11333 93 IEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLDPSNCLGIRAFADTHSCRDLLRIADKFTQHNFQEVME 172 (482)
Q Consensus 93 l~~~y~~~~~~~~~~~~~ll~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~i~~~~~~l~~ 172 (482)
|+|+|++. ++.+|+.+++.+|++|+++.++++|.+||..+++++||+.++.++..+.+..|.+.|.+|+.+||.++.+
T Consensus 83 l~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~ 160 (557)
T PHA02713 83 VQYLYNRH--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLIT 160 (557)
T ss_pred HHHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhC
Confidence 99999996 7889999999999999999999999999999999999999999888888889999999999999999999
Q ss_pred ccccccCCHHHHhHhhcCCC-cccCChHHHHHHHHHHHhcChhHHHHHHHHhhccccCCCCChhhHhhcccCcccccCCh
Q psy11333 173 SEEFLILPVAQLVDIISSDE-LNVRSEEQVFNAIMSWLKYNVSERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVRSDE 251 (482)
Q Consensus 173 ~~~f~~l~~~~l~~il~~~~-l~~~~e~~v~~~~~~wi~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~~~~~~~~~~~ 251 (482)
.++|..|+.+.|.++|++|+ +++.+|..+|+++++|++++...+++ +.++++++|++.+++..+. .+...+++...+
T Consensus 161 ~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r~~-~~~ll~~VR~~~l~~~~~~-~~~~~~~i~~~~ 238 (557)
T PHA02713 161 TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYITEEQ-LLCILSCIDIQNLDKKSRL-LLYSNKTINMYP 238 (557)
T ss_pred ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHHHHH-HhhhHhhhhHhhcchhhhh-hhcchHHHHhhH
Confidence 99999999999999999987 79999999999999999999876654 5699999999999998766 344445555566
Q ss_pred hhHHHHHHHHHHhcC---------------------------CCCCC---CCCCCCCCCCCCCCCCcEEEEecccc-CCC
Q psy11333 252 ACRDLVDEAKNYLLL---------------------------PQERP---LMQGPRTRPRKPSRRGEVLFAVGGWC-SGD 300 (482)
Q Consensus 252 ~~~~~~~~~~~~~~~---------------------------~~~~~---~~~~~~~~~~~~~~~~~~l~~~GG~~-~~~ 300 (482)
.|.+++.++.+.... ...|. .+|.+|..+ .+++++++||++||.. ...
T Consensus 239 ~c~~~l~~a~~~~~~~~r~~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~r~~~-~~a~l~~~IYviGG~~~~~~ 317 (557)
T PHA02713 239 SCIQFLLDNKQNRNIIPRQLCLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNHIINY-ASAIVDNEIIIAGGYNFNNP 317 (557)
T ss_pred HHHHHHhhhhhhcccCCcceEEEEecCccccCCCCEEEEeCCCCeEEECCCCCccccce-EEEEECCEEEEEcCCCCCCC
Confidence 666665443221110 00111 233344333 3455799999999975 345
Q ss_pred CCceeEEEeCCCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEE
Q psy11333 301 AISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAV 380 (482)
Q Consensus 301 ~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~ 380 (482)
..+++++|||.+++|..+++||.+|.++++++++|+||++||.++....+++++|||.+++|+.+ ++||.+|..+++++
T Consensus 318 ~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~-~~mp~~r~~~~~~~ 396 (557)
T PHA02713 318 SLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML-PDMPIALSSYGMCV 396 (557)
T ss_pred ccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC-CCCCcccccccEEE
Confidence 67899999999999999999999999999999999999999987766678999999999999999 99999999999999
Q ss_pred ECCEEEEEeccCCCc------------------ccCeEEEEeCCCCceeecCCCCCCccceEEEEECCEEEEEcCCCCCC
Q psy11333 381 LDGFLYAVGGQDGVQ------------------CLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQS 442 (482)
Q Consensus 381 ~~~~lyv~GG~~~~~------------------~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~ 442 (482)
++|+||++||.++.. ..+++++|||.+++|+.+++|+.+|..+++++++|+||++||.++..
T Consensus 397 ~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~ 476 (557)
T PHA02713 397 LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEK 476 (557)
T ss_pred ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCC
Confidence 999999999975321 25789999999999999999999999999999999999999987543
Q ss_pred C-CCeEEEEeCCC-CceeecCCCCcCCCceeEEEEcCCCCC
Q psy11333 443 P-LNTVERFDPKL-NRWTAMAPMSTRRKHLGCAVFVGDNGA 481 (482)
Q Consensus 443 ~-~~~~~~y~~~~-~~W~~~~~~~~~r~~~~~~~~~~~~~~ 481 (482)
. .+.+++|||.+ ++|+.+++||.+|..+++++++|+|+.
T Consensus 477 ~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv 517 (557)
T PHA02713 477 NVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMM 517 (557)
T ss_pred ccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEE
Confidence 3 34689999999 899999999999999999999999863
No 3
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.3e-70 Score=554.78 Aligned_cols=441 Identities=25% Similarity=0.473 Sum_probs=384.0
Q ss_pred cCCceeEEEEe--CCeEEeceeEEeeccCHHHHHHhcCCCCcCccceEEEccCCHHHHHHHHHHhhcCeeeeccccHhhH
Q psy11333 34 HRELCDVVLNV--GARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTL 111 (482)
Q Consensus 34 ~~~~~Dv~i~~--~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~y~~~~~~~~~~~~~l 111 (482)
++.+|||+|++ +|++|+|||.+|+++|+||++||++++. ++.|.|++ ++++|+.+|+|+|++.+.++.+++.++
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~l 81 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDI 81 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHH
Confidence 78999999998 9999999999999999999999999988 56799998 999999999999999999999999999
Q ss_pred HHHhcccChhhHHHHHHHHHhccCCCCCHHHHHHHHhhCCCHHHHHHHHHHHHHhHHHHhcccccccCCHHHHhHhhcCC
Q psy11333 112 LPAACLLQLVEIQDICCEFLKRQLDPSNCLGIRAFADTHSCRDLLRIADKFTQHNFQEVMESEEFLILPVAQLVDIISSD 191 (482)
Q Consensus 112 l~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~i~~~~~~l~~~~~f~~l~~~~l~~il~~~ 191 (482)
+.+|++|++++|+..|++++.++++.+||+.++.+|..+++..|.+.|.+||..||.++.++++|..|+.+.+..+|+++
T Consensus 82 l~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll~~~ 161 (534)
T PHA03098 82 LSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKILSDD 161 (534)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCChHHHHHHHHHHHhcChhHHHHHHHHhhccccCCCCChhhHhhccc------CcccccCChhhHHHHHHHHHHhc
Q psy11333 192 ELNVRSEEQVFNAIMSWLKYNVSERRQHLAQVLQHVRLPLLSPKFLVGTVG------SDLLVRSDEACRDLVDEAKNYLL 265 (482)
Q Consensus 192 ~l~~~~e~~v~~~~~~wi~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 265 (482)
.|++.+|..+|+++++|++++...|.+.+.++++++|++.|+++.|..... .+.++ ....|...+.....+..
T Consensus 162 ~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 240 (534)
T PHA03098 162 KLNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKKYNLN 240 (534)
T ss_pred CcCcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhccccccCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHHhccc
Confidence 999999999999999999999888888999999999999999998876543 33333 34445544333322210
Q ss_pred C--C-----------------------------CCCCCCC-CCCCCCCCCCCCCcEEEEeccccC-CCCCceeEEEeCCC
Q psy11333 266 L--P-----------------------------QERPLMQ-GPRTRPRKPSRRGEVLFAVGGWCS-GDAISSVERYDPQS 312 (482)
Q Consensus 266 ~--~-----------------------------~~~~~~~-~~~~~~~~~~~~~~~l~~~GG~~~-~~~~~~~~~~d~~~ 312 (482)
. + ..+..++ .+......+++.++.||++||... ....++++.||+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~ 320 (534)
T PHA03098 241 KILPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKT 320 (534)
T ss_pred CCCcCccCCCcceEeecccchhhceeeecchhhhhcccccCccccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCC
Confidence 0 0 0000111 111111134557899999999864 34557899999999
Q ss_pred CCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEECCEEEEEeccC
Q psy11333 313 SDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQD 392 (482)
Q Consensus 313 ~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~ 392 (482)
++|..+++||.+|.+|++++++++||++||.++....+++++||+.+++|+.+ +++|.+|..+++++.+++||++||..
T Consensus 321 ~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~lp~~r~~~~~~~~~~~iYv~GG~~ 399 (534)
T PHA03098 321 KSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE-PPLIFPRYNPCVVNVNNLIYVIGGIS 399 (534)
T ss_pred CeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC-CCcCcCCccceEEEECCEEEEECCcC
Confidence 99999999999999999999999999999988666678999999999999999 99999999999999999999999964
Q ss_pred C-CcccCeEEEEeCCCCceeecCCCCCCccceEEEEECCEEEEEcCCCCCC---CCCeEEEEeCCCCceeecCCCCcCCC
Q psy11333 393 G-VQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQS---PLNTVERFDPKLNRWTAMAPMSTRRK 468 (482)
Q Consensus 393 ~-~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~---~~~~~~~y~~~~~~W~~~~~~~~~r~ 468 (482)
. ....+++++||+.+++|+.++++|.+|.++++++.+++||++||.++.. ..+.+++||+.+++|+.++++|.+|.
T Consensus 400 ~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~ 479 (534)
T PHA03098 400 KNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRI 479 (534)
T ss_pred CCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccc
Confidence 3 3346889999999999999999999999999999999999999986432 25679999999999999999999999
Q ss_pred ceeEEEEcCCCC
Q psy11333 469 HLGCAVFVGDNG 480 (482)
Q Consensus 469 ~~~~~~~~~~~~ 480 (482)
.+++++++++|.
T Consensus 480 ~~~~~~~~~~iy 491 (534)
T PHA03098 480 NASLCIFNNKIY 491 (534)
T ss_pred cceEEEECCEEE
Confidence 999999888763
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=2e-69 Score=533.13 Aligned_cols=421 Identities=22% Similarity=0.358 Sum_probs=354.5
Q ss_pred HHHHHHhcCCceeEEEEeCCeEEeceeEEeeccCHHHHHHhcCCCCcCccceEEE--ccCCHHHHHHHHHHhhcCeeeec
Q psy11333 27 EVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTI--RDIDDVAMDNLIEFCYTSHITVE 104 (482)
Q Consensus 27 ~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~~i~l--~~~~~~~~~~~l~~~y~~~~~~~ 104 (482)
.+..++.++.+|||++.++ ++|+|||.||++.|+||++||++++.|+++ .+.+ .++++.+++.+|+|+||+++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it 89 (480)
T PHA02790 12 NILALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYID 89 (480)
T ss_pred hHHHHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEe
Confidence 3456778889999887655 599999999999999999999999999965 4554 48999999999999999999999
Q ss_pred cccHhhHHHHhcccChhhHHHHHHHHHhccCCCCCHHHHHHHHhhCCCHHHHHHHHHHHHHhHHHHhcc--cccccCCHH
Q psy11333 105 ESNVQTLLPAACLLQLVEIQDICCEFLKRQLDPSNCLGIRAFADTHSCRDLLRIADKFTQHNFQEVMES--EEFLILPVA 182 (482)
Q Consensus 105 ~~~~~~ll~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~i~~~~~~l~~~--~~f~~l~~~ 182 (482)
.+|+.+++.+|++|++++++++|.+||.++++++||+.++.+|+.+++.+|.+.+.+|+.+||.++.+. ++|..|+.
T Consensus 90 ~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~- 168 (480)
T PHA02790 90 SHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSM- 168 (480)
T ss_pred cccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCH-
Confidence 999999999999999999999999999999999999999999999999999999999999999999886 88999996
Q ss_pred HHhHhhcCCCcccCChHHHHHHHHHHHhcChhHHHHHHHHhhcc-ccCCCCChhhHhhcccCcccccCChhhHHHHHHHH
Q psy11333 183 QLVDIISSDELNVRSEEQVFNAIMSWLKYNVSERRQHLAQVLQH-VRLPLLSPKFLVGTVGSDLLVRSDEACRDLVDEAK 261 (482)
Q Consensus 183 ~l~~il~~~~l~~~~e~~v~~~~~~wi~~~~~~~~~~~~~l~~~-~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 261 (482)
.++|++|+|++.+|..+|+++++|++++.. +...+.+++++ +|++.+++..+... .....+..
T Consensus 169 --~~lLssd~L~v~~Ee~V~eav~~Wl~~~~~-~~~~l~~~vr~~ir~~~l~~~~l~~~-------------~~~~~~~~ 232 (480)
T PHA02790 169 --KLILESDELNVPDEDYVVDFVIKWYMKRRN-RLGNLLLLIKNVIRSNYLSPRGINNV-------------KWILDCTK 232 (480)
T ss_pred --HHhcccccCCCccHHHHHHHHHHHHHhhHH-HHHHHHHHHHhcCChhhCCHHHHHHH-------------HHHHHHHH
Confidence 689999999999999999999999997533 33333344444 78888887766421 00011111
Q ss_pred HHhcC--C-------CCCCCCCCC----CCCCCCCCCCCcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCce
Q psy11333 262 NYLLL--P-------QERPLMQGP----RTRPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGV 328 (482)
Q Consensus 262 ~~~~~--~-------~~~~~~~~~----~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~ 328 (482)
..... + ......+.. .......+..++.||++||..+....+.+++|||.+++|..+++|+.+|..+
T Consensus 233 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~ 312 (480)
T PHA02790 233 IFHCDKQPRKSYKYPFIEYPMNMDQIIDIFHMCTSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA 312 (480)
T ss_pred HhhccccccccccccccccCCcccceeeccCCcceEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc
Confidence 11000 0 000000000 0111112337899999999876667789999999999999999999999999
Q ss_pred eEEEECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCC
Q psy11333 329 GVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKEN 408 (482)
Q Consensus 329 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~ 408 (482)
++++++|+||++||.++ .+++++|||.+++|+.+ ++||.+|..+++++++|+||++||.++. .+++++|||.++
T Consensus 313 ~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~-~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~ 386 (480)
T PHA02790 313 SGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNM-PSLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLLPNHD 386 (480)
T ss_pred eEEEECCEEEEECCcCC---CCceEEEECCCCeEEEC-CCCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEeCCCC
Confidence 99999999999999754 25799999999999999 9999999999999999999999997643 367999999999
Q ss_pred ceeecCCCCCCccceEEEEECCEEEEEcCCCCCCCCCeEEEEeCCCCceeecCCCCcCCCceeEEEEcCCCC
Q psy11333 409 KWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVGDNG 480 (482)
Q Consensus 409 ~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~~~~~~~r~~~~~~~~~~~~~ 480 (482)
+|+.+++|+.||..+++++++|+||++||. +++|||++++|+.+++||.+|.++++++++|+|+
T Consensus 387 ~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~--------~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IY 450 (480)
T PHA02790 387 QWQFGPSTYYPHYKSCALVFGRRLFLVGRN--------AEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLL 450 (480)
T ss_pred EEEeCCCCCCccccceEEEECCEEEEECCc--------eEEecCCCCcEeEcCCCCCCccccEEEEECCEEE
Confidence 999999999999999999999999999984 6899999999999999999999999999999985
No 5
>KOG4441|consensus
Probab=100.00 E-value=2.7e-51 Score=407.16 Aligned_cols=421 Identities=33% Similarity=0.549 Sum_probs=325.8
Q ss_pred CeEEeceeEEeeccCHHHHHHhcCCCCcCccceEEE-ccCCHHHHHHHHHHhhcCee-eeccccHhhHHHHhcccChhhH
Q psy11333 46 ARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTI-RDIDDVAMDNLIEFCYTSHI-TVEESNVQTLLPAACLLQLVEI 123 (482)
Q Consensus 46 ~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~~i~l-~~~~~~~~~~~l~~~y~~~~-~~~~~~~~~ll~~a~~~~~~~L 123 (482)
.+++..+..--..-+...+.+|++...++.+++..| ...+..++..+.++|..+.. .++++||+.+..+|+.+.+.+|
T Consensus 75 ~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L 154 (571)
T KOG4441|consen 75 QKEINLEGVDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTEL 154 (571)
T ss_pred ceEEEEecCCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHH
Confidence 344555553333445677899999999888887766 66788889999999999864 8999999999999999999999
Q ss_pred HHHHHHHHhccCCCC----CH--HHHHHHHhhCCC--------HHHHHHHHHHHH-------HhHHHHhcccccccCCHH
Q psy11333 124 QDICCEFLKRQLDPS----NC--LGIRAFADTHSC--------RDLLRIADKFTQ-------HNFQEVMESEEFLILPVA 182 (482)
Q Consensus 124 ~~~~~~~i~~~~~~~----~~--~~~~~~~~~~~~--------~~L~~~~~~~i~-------~~~~~l~~~~~f~~l~~~ 182 (482)
.+.+..|+..+|... .. +...++...... ..+++++++|+. .++.++++..++..++..
T Consensus 155 ~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~ 234 (571)
T KOG4441|consen 155 LEVADEYILQHFAEVSKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEEREEHLPALLEAVRLPLLPPQ 234 (571)
T ss_pred HHHHHHHHHHHHHHHhccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHhcCccCCCHH
Confidence 999999999887431 11 122223332222 457999999985 356889999999999999
Q ss_pred HHhHhhcCCCcccCChHHHHHHH---HHHHhcChhHHHHHHHHhhccccCCCC----ChhhHhhcccCcccccCChhhHH
Q psy11333 183 QLVDIISSDELNVRSEEQVFNAI---MSWLKYNVSERRQHLAQVLQHVRLPLL----SPKFLVGTVGSDLLVRSDEACRD 255 (482)
Q Consensus 183 ~l~~il~~~~l~~~~e~~v~~~~---~~wi~~~~~~~~~~~~~l~~~~r~~~~----~~~~l~~~~~~~~~~~~~~~~~~ 255 (482)
.|.+.+....+... ...+.+.+ .+|...... + . .+...+.... ..-...|+............|++
T Consensus 235 ~l~~~v~~~~~~~~-~~~c~~~l~ea~~~~~~~~~-~-~----~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd 307 (571)
T KOG4441|consen 235 FLVEIVESEPLIKR-DSACRDLLDEAKKYHLLPQR-R-P----VMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYD 307 (571)
T ss_pred HHHHHHhhhhhhcc-CHHHHHHHHHHHHHhhCccc-C-c----cccCCCcccCcCCCCeEEEECCCCCCCcccceeEEec
Confidence 99999998876322 22222222 122211110 0 0 0111111111 11122233222112222333444
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCcEEEEecccc-CCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEEEC
Q psy11333 256 LVDEAKNYLLLPQERPLMQGPRTRPRKPSRRGEVLFAVGGWC-SGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLN 334 (482)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GG~~-~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~ 334 (482)
. ....|..+. .+|.+|.... .++++++||++||+. +...++++++|||.+++|..+++|+.+|..+++++++
T Consensus 308 ~--~~~~w~~~a----~m~~~r~~~~-~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~ 380 (571)
T KOG4441|consen 308 P--KTNEWSSLA----PMPSPRCRVG-VAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLD 380 (571)
T ss_pred C--CcCcEeecC----CCCccccccc-EEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEEC
Confidence 3 234576665 3666666444 445799999999998 6788899999999999999999999999999999999
Q ss_pred CEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEECCEEEEEeccCCCc-ccCeEEEEeCCCCceeec
Q psy11333 335 DLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQ-CLNHVERYDPKENKWSRV 413 (482)
Q Consensus 335 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~yd~~~~~W~~~ 413 (482)
|.||++||.++....+++|+|||.+++|+.+ ++|+.+|+++++++++|+||++||.++.. ..+++++|||.+++|+.+
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~v-a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~ 459 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPV-APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI 459 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCccccc-CCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence 9999999999988899999999999999999 99999999999999999999999988766 889999999999999999
Q ss_pred CCCCCCccceEEEEECCEEEEEcCCCCCCCCCeEEEEeCCCCceeecCCCCcCCCceeEEEEcCCCCC
Q psy11333 414 APMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVGDNGA 481 (482)
Q Consensus 414 ~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~ 481 (482)
++|+.+|.++++++++++||++||+++.....++++|||.+++|+.+++|+.+|..++++++++++++
T Consensus 460 ~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~ 527 (571)
T KOG4441|consen 460 APMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYA 527 (571)
T ss_pred CCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEE
Confidence 99999999999999999999999999876788899999999999999999999999999999999864
No 6
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=346.17 Aligned_cols=391 Identities=14% Similarity=0.198 Sum_probs=267.0
Q ss_pred ccCHHHHHHhcCCCCcCccceEEE-ccCCHHHHHHHHHHhhcCee-eeccccHhhHHHHhcccChhhHHHHHHHHHhccC
Q psy11333 58 ACSPYFRAMFTGELAESRQAEVTI-RDIDDVAMDNLIEFCYTSHI-TVEESNVQTLLPAACLLQLVEIQDICCEFLKRQL 135 (482)
Q Consensus 58 ~~S~~F~~~~~~~~~e~~~~~i~l-~~~~~~~~~~~l~~~y~~~~-~~~~~~~~~ll~~a~~~~~~~L~~~~~~~i~~~~ 135 (482)
+.....+.+|++.+ +..++..+ ...+..++..+++.|..+.. .++.+||++++..+..+.+.+|.+.|.+|+.++|
T Consensus 78 ~~~~ll~y~Yt~~i--~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f 155 (557)
T PHA02713 78 AVKNIVQYLYNRHI--SSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNI 155 (557)
T ss_pred HHHHHHHHhcCCCC--CHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 34556678999874 34444333 56678889999999988753 7899999999997777777889999999999987
Q ss_pred CCC----CH--HHHHHHHhh------C---CCHHHHHHHHHHHHH------hHHHHhcccccccCCHHHHhHhhcCCCcc
Q psy11333 136 DPS----NC--LGIRAFADT------H---SCRDLLRIADKFTQH------NFQEVMESEEFLILPVAQLVDIISSDELN 194 (482)
Q Consensus 136 ~~~----~~--~~~~~~~~~------~---~~~~L~~~~~~~i~~------~~~~l~~~~~f~~l~~~~l~~il~~~~l~ 194 (482)
... .. +...++... . ....+++++++|+.+ ++.++++..+|..++...+. .+.++.+.
T Consensus 156 ~~v~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r~~~~~ll~~VR~~~l~~~~~~-~~~~~~~i 234 (557)
T PHA02713 156 PTLITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYITEEQLLCILSCIDIQNLDKKSRL-LLYSNKTI 234 (557)
T ss_pred HHHhCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHHHHHHhhhHhhhhHhhcchhhhh-hhcchHHH
Confidence 531 11 111112111 1 234678999999863 35578889999988888766 34333332
Q ss_pred cCChHHHHHHHHHHHhc-ChhHHHHHHH------H-hhccc-----------cCCCCChh-------------hHhhccc
Q psy11333 195 VRSEEQVFNAIMSWLKY-NVSERRQHLA------Q-VLQHV-----------RLPLLSPK-------------FLVGTVG 242 (482)
Q Consensus 195 ~~~e~~v~~~~~~wi~~-~~~~~~~~~~------~-l~~~~-----------r~~~~~~~-------------~l~~~~~ 242 (482)
.......+.+..-++. ....|...+. . ....+ ....|+.. ++.|+..
T Consensus 235 -~~~~~c~~~l~~a~~~~~~~~r~~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~ 313 (557)
T PHA02713 235 -NMYPSCIQFLLDNKQNRNIIPRQLCLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYN 313 (557)
T ss_pred -HhhHHHHHHHhhhhhhcccCCcceEEEEecCccccCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCC
Confidence 1111122222111110 0000000000 0 00000 00111100 0111110
Q ss_pred CcccccCChhhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCC
Q psy11333 243 SDLLVRSDEACRDLVDEAKNYLLLPQERPLMQGPRTRPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMS 322 (482)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~ 322 (482)
..........++++ ....|..++ .++.+|..+. .++++++||++||..+...++++++|||.+++|..+++||
T Consensus 314 ~~~~~~~~v~~Yd~--~~n~W~~~~----~m~~~R~~~~-~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp 386 (557)
T PHA02713 314 FNNPSLNKVYKINI--ENKIHVELP----PMIKNRCRFS-LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMP 386 (557)
T ss_pred CCCCccceEEEEEC--CCCeEeeCC----CCcchhhcee-EEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCC
Confidence 00000011111111 223455444 3556666554 4457999999999876666789999999999999999999
Q ss_pred CCCCceeEEEECCEEEEEecCCCCC------------------CCCeEEEEeCCCCceeecCCCCCCcccceeEEEECCE
Q psy11333 323 KRRCGVGVAVLNDLLYAVGGHDGQS------------------YLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGF 384 (482)
Q Consensus 323 ~~~~~~~~~~~~~~iyv~GG~~~~~------------------~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~ 384 (482)
.+|.++++++++|+||++||.++.. ..+++++|||.+++|+.+ ++|+.+|..+++++++|+
T Consensus 387 ~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~~~r~~~~~~~~~~~ 465 (557)
T PHA02713 387 IALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PNFWTGTIRPGVVSHKDD 465 (557)
T ss_pred cccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec-CCCCcccccCcEEEECCE
Confidence 9999999999999999999976421 257899999999999999 999999999999999999
Q ss_pred EEEEeccCCCc-ccCeEEEEeCCC-CceeecCCCCCCccceEEEEECCEEEEEcCCCCCCCCCeEEEEeCCCCceeecCC
Q psy11333 385 LYAVGGQDGVQ-CLNHVERYDPKE-NKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAP 462 (482)
Q Consensus 385 lyv~GG~~~~~-~~~~~~~yd~~~-~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~~~ 462 (482)
||++||.++.. ..+.+++|||.+ ++|+.+++||.+|..+++++++|+||++||+++. .++++|||.+++|+.+++
T Consensus 466 IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 466 IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHICH 542 (557)
T ss_pred EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecce---eehhhcCcccccccchhh
Confidence 99999976433 234689999999 8999999999999999999999999999999873 479999999999999876
Q ss_pred C
Q psy11333 463 M 463 (482)
Q Consensus 463 ~ 463 (482)
-
T Consensus 543 ~ 543 (557)
T PHA02713 543 Q 543 (557)
T ss_pred h
Confidence 4
No 7
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=4.3e-40 Score=332.71 Aligned_cols=439 Identities=17% Similarity=0.312 Sum_probs=297.3
Q ss_pred CceeeecCCcHHHHH-HHHHHHHhcCCceeEEEEeCCeEEeceeEEeeccCHHHHHHhcCCCCcCccceEEE-ccCCHHH
Q psy11333 11 ACLTHTSDKHPRVVL-SEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTI-RDIDDVA 88 (482)
Q Consensus 11 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~~i~l-~~~~~~~ 88 (482)
+...++.|+..-.-. .-|..||..+.. .-.|.+.+ ... +...+++.+|+|.+..+.++...+ ...+..+
T Consensus 19 ~~~~~~~Hk~vLaa~S~yF~~mf~~~~~-~~~i~l~~-~~~-------~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~ 89 (534)
T PHA03098 19 GGGIIKVHKIILSSSSEYFKKMFKNNFK-ENEINLNI-DYD-------SFNEVIKYIYTGKINITSNNVKDILSIANYLI 89 (534)
T ss_pred CCEEEEeHHHHHHhhhHHHHHHHhCCCC-CceEEecC-CHH-------HHHHHHHHhcCCceEEcHHHHHHHHHHHHHhC
Confidence 345666665542211 125667665432 22333333 333 334556789999877666654444 4456666
Q ss_pred HHHHHHHhhcCee-eeccccHhhHHHHhcccChhhHHHHHHHHHhccCCC---C-CH--HHHHHHH-----hhC---CCH
Q psy11333 89 MDNLIEFCYTSHI-TVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLDP---S-NC--LGIRAFA-----DTH---SCR 153 (482)
Q Consensus 89 ~~~~l~~~y~~~~-~~~~~~~~~ll~~a~~~~~~~L~~~~~~~i~~~~~~---~-~~--~~~~~~~-----~~~---~~~ 153 (482)
+..+.+.|..... .++.+||.+++.+|+.+++++|++.|.+||.+++.. . .. +..-.+. +.. +..
T Consensus 90 ~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll~~~~L~v~~E~ 169 (534)
T PHA03098 90 IDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKILSDDKLNVSSED 169 (534)
T ss_pred cHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhcCCCcCcCCHH
Confidence 7888877777643 689999999999999999999999999999988742 1 11 1111111 112 234
Q ss_pred HHHHHHHHHHH-------HhHHHHhcccccccCCHHHHhHhhc------CCCcccCChHH--HHHHHHHHHhcChhHHHH
Q psy11333 154 DLLRIADKFTQ-------HNFQEVMESEEFLILPVAQLVDIIS------SDELNVRSEEQ--VFNAIMSWLKYNVSERRQ 218 (482)
Q Consensus 154 ~L~~~~~~~i~-------~~~~~l~~~~~f~~l~~~~l~~il~------~~~l~~~~e~~--v~~~~~~wi~~~~~~~~~ 218 (482)
.+++++++|+. .++.++++..+|..++.+.|.+++. ++.+. .++.. +............. +..
T Consensus 170 ~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~ 247 (534)
T PHA03098 170 VVLEIIIKWLTSKKNNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKKYNLNKILP-RSS 247 (534)
T ss_pred HHHHHHHHHHhcChhhhHhHHHHHHhhccccccCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHHhcccCCCc-Ccc
Confidence 67999999994 4567899999999999999999875 44443 33221 11111111000000 000
Q ss_pred HHHHh-----------hcc-------ccCCCC---C------------hhhHhhcccCcccccCChhhHHHHHHHHHHhc
Q psy11333 219 HLAQV-----------LQH-------VRLPLL---S------------PKFLVGTVGSDLLVRSDEACRDLVDEAKNYLL 265 (482)
Q Consensus 219 ~~~~l-----------~~~-------~r~~~~---~------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (482)
..... ... -+...+ + .-++.|+............+.+. ....|..
T Consensus 248 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~--~~~~W~~ 325 (534)
T PHA03098 248 TFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDT--KTKSWNK 325 (534)
T ss_pred CCCcceEeecccchhhceeeecchhhhhcccccCccccccceEEEECCEEEEECCCcCCCCeeccEEEEeC--CCCeeeE
Confidence 00000 000 000000 0 00111211111111111112221 2345655
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEEECCEEEEEecCCC
Q psy11333 266 LPQERPLMQGPRTRPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDG 345 (482)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~ 345 (482)
++ .++.+|..+. .+..+++||++||.......+++++|||.+++|...+++|.+|.++++++++++||++||...
T Consensus 326 ~~----~~~~~R~~~~-~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~ 400 (534)
T PHA03098 326 VP----ELIYPRKNPG-VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISK 400 (534)
T ss_pred CC----CCCcccccce-EEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCC
Confidence 54 3555666554 445799999999987666788999999999999999999999999999999999999999753
Q ss_pred -CCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEECCEEEEEeccCCCc---ccCeEEEEeCCCCceeecCCCCCCcc
Q psy11333 346 -QSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQ---CLNHVERYDPKENKWSRVAPMTTRRL 421 (482)
Q Consensus 346 -~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~---~~~~~~~yd~~~~~W~~~~~~~~~r~ 421 (482)
....+++++|||.+++|+.+ +++|.+|..+++++.+++||++||.+... ..+.+++||+.+++|+.++++|.+|.
T Consensus 401 ~~~~~~~v~~yd~~t~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~ 479 (534)
T PHA03098 401 NDELLKTVECFSLNTNKWSKG-SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRI 479 (534)
T ss_pred CCcccceEEEEeCCCCeeeec-CCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccc
Confidence 33468899999999999999 89999999999999999999999975432 25679999999999999999999999
Q ss_pred ceEEEEECCEEEEEcCCCCCCCCCeEEEEeCCCCceeecCCCCcCCC
Q psy11333 422 GVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRK 468 (482)
Q Consensus 422 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~~~~~~~r~ 468 (482)
.+++++.+++||++||.++....+++++||+++++|+.++.+|....
T Consensus 480 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~ 526 (534)
T PHA03098 480 NASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIG 526 (534)
T ss_pred cceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCccccc
Confidence 99999999999999999876667899999999999999998876543
No 8
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=3.6e-40 Score=325.33 Aligned_cols=369 Identities=16% Similarity=0.221 Sum_probs=254.3
Q ss_pred cCHHHHHHhcCCCCcCccceEEE-ccCCHHHHHHHHHHhhcCe-eeeccccHhhHHHHhcccChhhHHHHHHHHHhccCC
Q psy11333 59 CSPYFRAMFTGELAESRQAEVTI-RDIDDVAMDNLIEFCYTSH-ITVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLD 136 (482)
Q Consensus 59 ~S~~F~~~~~~~~~e~~~~~i~l-~~~~~~~~~~~l~~~y~~~-~~~~~~~~~~ll~~a~~~~~~~L~~~~~~~i~~~~~ 136 (482)
-+...+.+|||++..+.+++..+ ...+..++..+++.|..+. -.++++||++++.+|+.|++++|.+.+.+|+.++|.
T Consensus 74 l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~ 153 (480)
T PHA02790 74 LTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFL 153 (480)
T ss_pred HHHHHHhheeeeEEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHH
Confidence 35566899999999888877555 6678888999999999985 479999999999999999999999999999999875
Q ss_pred CCC-----HHHHHHHHhhC--------CCHHHHHHHHHHHHHh---HHHHhcc----cccccCCHHHHhHhhcCCCcccC
Q psy11333 137 PSN-----CLGIRAFADTH--------SCRDLLRIADKFTQHN---FQEVMES----EEFLILPVAQLVDIISSDELNVR 196 (482)
Q Consensus 137 ~~~-----~~~~~~~~~~~--------~~~~L~~~~~~~i~~~---~~~l~~~----~~f~~l~~~~l~~il~~~~l~~~ 196 (482)
... .+..+...... +...+++++++|+.+. ...+++. .++..|+.+.+..+.
T Consensus 154 ~v~~~~~~ef~~L~~~~lLssd~L~v~~Ee~V~eav~~Wl~~~~~~~~~l~~~vr~~ir~~~l~~~~l~~~~-------- 225 (480)
T PHA02790 154 ELEDDIIDNFDYLSMKLILESDELNVPDEDYVVDFVIKWYMKRRNRLGNLLLLIKNVIRSNYLSPRGINNVK-------- 225 (480)
T ss_pred HHhcccchhhhhCCHHHhcccccCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCChhhCCHHHHHHHH--------
Confidence 421 11111111222 2245799999999742 2233332 444555555443210
Q ss_pred ChHHHHHHHHHHHhc-ChhHHHHHHHH--hhccc---cCCCCC------h-hhHhhcccCcccccCChhhHHHHHHHHHH
Q psy11333 197 SEEQVFNAIMSWLKY-NVSERRQHLAQ--VLQHV---RLPLLS------P-KFLVGTVGSDLLVRSDEACRDLVDEAKNY 263 (482)
Q Consensus 197 ~e~~v~~~~~~wi~~-~~~~~~~~~~~--l~~~~---r~~~~~------~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (482)
.+.......... .+......... -.... ...... . -++.|+..... ......+++. ....|
T Consensus 226 ---~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyviGG~~~~~-~~~~v~~Ydp--~~~~W 299 (480)
T PHA02790 226 ---WILDCTKIFHCDKQPRKSYKYPFIEYPMNMDQIIDIFHMCTSTHVGEVVYLIGGWMNNE-IHNNAIAVNY--ISNNW 299 (480)
T ss_pred ---HHHHHHHHhhccccccccccccccccCCcccceeeccCCcceEEECCEEEEEcCCCCCC-cCCeEEEEEC--CCCEE
Confidence 000000000000 00000000000 00000 000000 0 01112211100 0011112222 12346
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEEECCEEEEEecC
Q psy11333 264 LLLPQERPLMQGPRTRPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGH 343 (482)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~ 343 (482)
..+++ ++.+|..+. .++++++||++||..+ .+++++|||.+++|..+++||.+|.++++++++|+||++||.
T Consensus 300 ~~~~~----m~~~r~~~~-~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~ 371 (480)
T PHA02790 300 IPIPP----MNSPRLYAS-GVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGH 371 (480)
T ss_pred EECCC----CCchhhcce-EEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCc
Confidence 65553 555665544 3457999999999742 257999999999999999999999999999999999999998
Q ss_pred CCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccce
Q psy11333 344 DGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGV 423 (482)
Q Consensus 344 ~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~ 423 (482)
++. .+++++|||.+++|+.+ ++|+.+|..+++++++|+||++||. +++|||.+++|+.+++||.+|..+
T Consensus 372 ~~~--~~~ve~ydp~~~~W~~~-~~m~~~r~~~~~~~~~~~IYv~GG~--------~e~ydp~~~~W~~~~~m~~~r~~~ 440 (480)
T PHA02790 372 SET--DTTTEYLLPNHDQWQFG-PSTYYPHYKSCALVFGRRLFLVGRN--------AEFYCESSNTWTLIDDPIYPRDNP 440 (480)
T ss_pred CCC--CccEEEEeCCCCEEEeC-CCCCCccccceEEEECCEEEEECCc--------eEEecCCCCcEeEcCCCCCCcccc
Confidence 643 36799999999999999 9999999999999999999999983 688999999999999999999999
Q ss_pred EEEEECCEEEEEcCCCCCCCCCeEEEEeCCCCceeec
Q psy11333 424 AVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAM 460 (482)
Q Consensus 424 ~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~ 460 (482)
++++++|+||++||.++....+.+++|||.+++|+..
T Consensus 441 ~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 441 ELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred EEEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 9999999999999987655578899999999999864
No 9
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1e-32 Score=262.57 Aligned_cols=217 Identities=23% Similarity=0.372 Sum_probs=177.0
Q ss_pred HHhcCCCCCCCCCCCCCCCCCCCCCCcEEEEeccccC--CCCCceeEEEeCCCCCeeeccCCC-CCC---CceeEEEECC
Q psy11333 262 NYLLLPQERPLMQGPRTRPRKPSRRGEVLFAVGGWCS--GDAISSVERYDPQSSDWKIVAPMS-KRR---CGVGVAVLND 335 (482)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GG~~~--~~~~~~~~~~d~~~~~W~~~~~~~-~~~---~~~~~~~~~~ 335 (482)
.|..++......|.+|..+.. ++++++||++||... ....+++++||+.+++|..+++++ .|| .+|+++++++
T Consensus 8 ~W~~~~~~~~~~P~pR~~h~~-~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~ 86 (341)
T PLN02153 8 GWIKVEQKGGKGPGPRCSHGI-AVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGT 86 (341)
T ss_pred eEEEecCCCCCCCCCCCcceE-EEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECC
Confidence 466665543346778876654 456899999999853 234578999999999999887654 344 3688889999
Q ss_pred EEEEEecCCCCCCCCeEEEEeCCCCceeecCCCC-----CCcccceeEEEECCEEEEEeccCCCc------ccCeEEEEe
Q psy11333 336 LLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPT-----TSCRTSVGVAVLDGFLYAVGGQDGVQ------CLNHVERYD 404 (482)
Q Consensus 336 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-----~~~r~~~~~~~~~~~lyv~GG~~~~~------~~~~~~~yd 404 (482)
+||++||.+.....+++++||+.+++|+.+ +++ |.+|..+++++.+++|||+||.+... ..+++++||
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~-~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKNEWTFL-TKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCCEEEEe-ccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 999999987766678999999999999998 666 78999999999999999999975321 346899999
Q ss_pred CCCCceeecCCCC---CCccceEEEEECCEEEEEcCCCCC--------CCCCeEEEEeCCCCceeecC---CCCcCCCce
Q psy11333 405 PKENKWSRVAPMT---TRRLGVAVAVLGGFLYAIGGSDGQ--------SPLNTVERFDPKLNRWTAMA---PMSTRRKHL 470 (482)
Q Consensus 405 ~~~~~W~~~~~~~---~~r~~~~~~~~~~~i~v~GG~~~~--------~~~~~~~~y~~~~~~W~~~~---~~~~~r~~~ 470 (482)
+++++|+.+++++ .+|.++++++++++||++||.+.. ...+++++||+.+++|+.++ .+|.+|..+
T Consensus 166 ~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~ 245 (341)
T PLN02153 166 IADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVF 245 (341)
T ss_pred CCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCccee
Confidence 9999999998764 789999999999999999996421 12578999999999999986 478999999
Q ss_pred eEEEEcCCCC
Q psy11333 471 GCAVFVGDNG 480 (482)
Q Consensus 471 ~~~~~~~~~~ 480 (482)
++++++++|.
T Consensus 246 ~~~~~~~~iy 255 (341)
T PLN02153 246 AHAVVGKYII 255 (341)
T ss_pred eeEEECCEEE
Confidence 9999988763
No 10
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=7.6e-33 Score=261.55 Aligned_cols=212 Identities=18% Similarity=0.217 Sum_probs=173.7
Q ss_pred HHhcCCCCCCCCCCCCCCCCCCCCCCcEEEEeccccCCCCCceeEEEeCCCCCe----eeccCCCCCCCceeEEEECCEE
Q psy11333 262 NYLLLPQERPLMQGPRTRPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDW----KIVAPMSKRRCGVGVAVLNDLL 337 (482)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~~~~~~~~~~~~~~~~i 337 (482)
.|..++ .+|.+|.... .+++++.||++||..+...++++++||+.+++| ..+++||.+|..|++++++++|
T Consensus 52 ~W~~~~----~lp~~r~~~~-~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~i 126 (323)
T TIGR03548 52 KWVKDG----QLPYEAAYGA-SVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTL 126 (323)
T ss_pred eEEEcc----cCCccccceE-EEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEE
Confidence 465554 3566665444 345699999999987666778999999999998 7789999999999999999999
Q ss_pred EEEecCCCCCCCCeEEEEeCCCCceeecCCCCC-CcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCC
Q psy11333 338 YAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTT-SCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPM 416 (482)
Q Consensus 338 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 416 (482)
|++||.......+++++||+.+++|+.+ +++| .+|..+++++.+++|||+||.++.. ..++++||+.+++|+.+++|
T Consensus 127 Yv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~ 204 (323)
T TIGR03548 127 YVGGGNRNGKPSNKSYLFNLETQEWFEL-PDFPGEPRVQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADP 204 (323)
T ss_pred EEEeCcCCCccCceEEEEcCCCCCeeEC-CCCCCCCCCcceEEEECCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCC
Confidence 9999986555578999999999999999 7777 5888888899999999999986533 45789999999999999876
Q ss_pred C---CCc--cceEE-EEECCEEEEEcCCCCCC--------------------------------CCCeEEEEeCCCCcee
Q psy11333 417 T---TRR--LGVAV-AVLGGFLYAIGGSDGQS--------------------------------PLNTVERFDPKLNRWT 458 (482)
Q Consensus 417 ~---~~r--~~~~~-~~~~~~i~v~GG~~~~~--------------------------------~~~~~~~y~~~~~~W~ 458 (482)
+ .|+ ..+++ ++.+++||++||.++.. ..+++++||+.+++|+
T Consensus 205 ~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 284 (323)
T TIGR03548 205 TTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWK 284 (323)
T ss_pred CCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeee
Confidence 3 333 33443 44478999999986421 1367999999999999
Q ss_pred ecCCCC-cCCCceeEEEEcCCCC
Q psy11333 459 AMAPMS-TRRKHLGCAVFVGDNG 480 (482)
Q Consensus 459 ~~~~~~-~~r~~~~~~~~~~~~~ 480 (482)
.++++| .+|.++++++++++|.
T Consensus 285 ~~~~~p~~~r~~~~~~~~~~~iy 307 (323)
T TIGR03548 285 SIGNSPFFARCGAALLLTGNNIF 307 (323)
T ss_pred EcccccccccCchheEEECCEEE
Confidence 999998 5899999999999875
No 11
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=9.6e-32 Score=264.84 Aligned_cols=216 Identities=20% Similarity=0.397 Sum_probs=180.1
Q ss_pred HHHhcCCCCCCCCCCCCCCCCCCCCCCcEEEEeccccC-CC-CCceeEEEeCCCCCeeeccC---CCC-CCCceeEEEEC
Q psy11333 261 KNYLLLPQERPLMQGPRTRPRKPSRRGEVLFAVGGWCS-GD-AISSVERYDPQSSDWKIVAP---MSK-RRCGVGVAVLN 334 (482)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GG~~~-~~-~~~~~~~~d~~~~~W~~~~~---~~~-~~~~~~~~~~~ 334 (482)
.+|..+++.. ..|.+|..+.+ +.+++.||++||... .. ..+++++||+.+++|..+++ +|. .|.+|++++++
T Consensus 151 ~~W~~~~~~~-~~P~pR~~h~~-~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~ 228 (470)
T PLN02193 151 GKWIKVEQKG-EGPGLRCSHGI-AQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG 228 (470)
T ss_pred ceEEEcccCC-CCCCCccccEE-EEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC
Confidence 4676665321 24667877664 456899999999752 22 34679999999999998764 333 35678889999
Q ss_pred CEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCC---CCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCcee
Q psy11333 335 DLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPT---TSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWS 411 (482)
Q Consensus 335 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~---~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~ 411 (482)
++|||+||.+.....+++++||+.+++|+++ +++ |.+|..+++++.+++||++||.+.....+++++||+.+++|+
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l-~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLL-TPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEc-CcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 9999999988766778999999999999999 776 789999999999999999999877666789999999999999
Q ss_pred ecCC---CCCCccceEEEEECCEEEEEcCCCCCCCCCeEEEEeCCCCceeecCCC---CcCCCceeEEEEcCCCC
Q psy11333 412 RVAP---MTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPM---STRRKHLGCAVFVGDNG 480 (482)
Q Consensus 412 ~~~~---~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~~~~---~~~r~~~~~~~~~~~~~ 480 (482)
.++. +|.+|.++++++++++||++||.++. ..+++++||+++++|+.++++ |.+|..|++++++++|.
T Consensus 308 ~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iy 381 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIV 381 (470)
T ss_pred eCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEE
Confidence 9874 67899999999999999999998764 368899999999999999754 88999999999988763
No 12
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.3e-31 Score=255.03 Aligned_cols=192 Identities=22% Similarity=0.342 Sum_probs=159.0
Q ss_pred CCCCCcEEEEeccccCCCCCceeEEEeCCCCCeeeccCC-----CCCCCceeEEEECCEEEEEecCCCCC------CCCe
Q psy11333 283 PSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPM-----SKRRCGVGVAVLNDLLYAVGGHDGQS------YLNS 351 (482)
Q Consensus 283 ~~~~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-----~~~~~~~~~~~~~~~iyv~GG~~~~~------~~~~ 351 (482)
.++++++||++||..+...++++++||+.+++|+.+++| |.+|..|++++.+++|||+||.+... ..++
T Consensus 81 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 160 (341)
T PLN02153 81 MVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT 160 (341)
T ss_pred EEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccce
Confidence 456799999999987666778999999999999998877 78999999999999999999986422 3468
Q ss_pred EEEEeCCCCceeecCCCC---CCcccceeEEEECCEEEEEeccCC--------CcccCeEEEEeCCCCceeecCC---CC
Q psy11333 352 IERYDPQTNQWSCDVAPT---TSCRTSVGVAVLDGFLYAVGGQDG--------VQCLNHVERYDPKENKWSRVAP---MT 417 (482)
Q Consensus 352 ~~~yd~~~~~W~~~~~~~---~~~r~~~~~~~~~~~lyv~GG~~~--------~~~~~~~~~yd~~~~~W~~~~~---~~ 417 (482)
+++||+.+++|+.+ +++ +.+|..+++++++++||++||.+. ....+++++||+.+++|+.++. +|
T Consensus 161 v~~yd~~~~~W~~l-~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P 239 (341)
T PLN02153 161 IEAYNIADGKWVQL-PDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKP 239 (341)
T ss_pred EEEEECCCCeEeeC-CCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCC
Confidence 99999999999998 554 378999999999999999998641 1225789999999999999874 68
Q ss_pred CCccceEEEEECCEEEEEcCCCC---------CCCCCeEEEEeCCCCceeecC-----CCCcCCCceeEEEE
Q psy11333 418 TRRLGVAVAVLGGFLYAIGGSDG---------QSPLNTVERFDPKLNRWTAMA-----PMSTRRKHLGCAVF 475 (482)
Q Consensus 418 ~~r~~~~~~~~~~~i~v~GG~~~---------~~~~~~~~~y~~~~~~W~~~~-----~~~~~r~~~~~~~~ 475 (482)
.+|..+++++++++|||+||... ....+++++||+++++|+.++ ++|.+|..++++.+
T Consensus 240 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v 311 (341)
T PLN02153 240 SARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATV 311 (341)
T ss_pred CCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCcccccccccc
Confidence 89999999999999999999731 123568999999999999985 56666654444443
No 13
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=8.6e-32 Score=257.24 Aligned_cols=214 Identities=18% Similarity=0.318 Sum_probs=166.4
Q ss_pred HHHhcCCCCCCCCC-CCCCCCCCCCCCCcEEEEeccccCC------CCCceeEEEeCCCCCeeecc-CCCCCCCceeEE-
Q psy11333 261 KNYLLLPQERPLMQ-GPRTRPRKPSRRGEVLFAVGGWCSG------DAISSVERYDPQSSDWKIVA-PMSKRRCGVGVA- 331 (482)
Q Consensus 261 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~GG~~~~------~~~~~~~~~d~~~~~W~~~~-~~~~~~~~~~~~- 331 (482)
.+|..++. +| .+|..+. .++++++||++||.... ..++++++|||.+++|+.++ ++|.+|.+++++
T Consensus 41 ~~W~~l~~----~p~~~R~~~~-~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~ 115 (346)
T TIGR03547 41 KGWQKIAD----FPGGPRNQAV-AAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFS 115 (346)
T ss_pred CCceECCC----CCCCCcccce-EEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEE
Confidence 34655552 44 3454443 45679999999997532 24678999999999999987 567777777776
Q ss_pred EECCEEEEEecCCCCC----------------------------------CCCeEEEEeCCCCceeecCCCCCC-cccce
Q psy11333 332 VLNDLLYAVGGHDGQS----------------------------------YLNSIERYDPQTNQWSCDVAPTTS-CRTSV 376 (482)
Q Consensus 332 ~~~~~iyv~GG~~~~~----------------------------------~~~~~~~yd~~~~~W~~~~~~~~~-~r~~~ 376 (482)
+++++||++||.+... ..+++++|||.+++|+.+ ++||. +|..+
T Consensus 116 ~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~-~~~p~~~r~~~ 194 (346)
T TIGR03547 116 LHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNL-GENPFLGTAGS 194 (346)
T ss_pred EeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeEC-ccCCCCcCCCc
Confidence 6899999999976320 137899999999999999 88886 68889
Q ss_pred eEEEECCEEEEEeccCCCc-ccCeEEEEe--CCCCceeecCCCCCCcc-------ceEEEEECCEEEEEcCCCCCC----
Q psy11333 377 GVAVLDGFLYAVGGQDGVQ-CLNHVERYD--PKENKWSRVAPMTTRRL-------GVAVAVLGGFLYAIGGSDGQS---- 442 (482)
Q Consensus 377 ~~~~~~~~lyv~GG~~~~~-~~~~~~~yd--~~~~~W~~~~~~~~~r~-------~~~~~~~~~~i~v~GG~~~~~---- 442 (482)
++++++++||++||..... ....+++|| +.+++|+.+++||.+|. ++.+++++++||++||.+...
T Consensus 195 ~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~ 274 (346)
T TIGR03547 195 AIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQEN 274 (346)
T ss_pred eEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhh
Confidence 9999999999999975322 234455555 57789999999988763 455778899999999975211
Q ss_pred -------------CCCeEEEEeCCCCceeecCCCCcCCCceeEEEEcCCCC
Q psy11333 443 -------------PLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVGDNG 480 (482)
Q Consensus 443 -------------~~~~~~~y~~~~~~W~~~~~~~~~r~~~~~~~~~~~~~ 480 (482)
....+++||+++++|+.+++||.+|.++++++++|+|.
T Consensus 275 ~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iy 325 (346)
T TIGR03547 275 YKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVL 325 (346)
T ss_pred hhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEE
Confidence 12468999999999999999999999999888898874
No 14
>PLN02193 nitrile-specifier protein
Probab=99.97 E-value=1.3e-30 Score=256.76 Aligned_cols=189 Identities=21% Similarity=0.435 Sum_probs=162.5
Q ss_pred CCCCCCcEEEEeccccCCCCCceeEEEeCCCCCeeeccCC---CCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCC
Q psy11333 282 KPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPM---SKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQ 358 (482)
Q Consensus 282 ~~~~~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~---~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 358 (482)
+.+.++++||++||......++++++||+.+++|+.++++ |.+|..|++++.+++|||+||.+.....+++++||+.
T Consensus 223 ~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~ 302 (470)
T PLN02193 223 RMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIV 302 (470)
T ss_pred EEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECC
Confidence 3456799999999987666788999999999999999887 8899999999999999999999876677899999999
Q ss_pred CCceeecCC--CCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCC---CCCccceEEEEECCEEE
Q psy11333 359 TNQWSCDVA--PTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPM---TTRRLGVAVAVLGGFLY 433 (482)
Q Consensus 359 ~~~W~~~~~--~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~i~ 433 (482)
+++|+.+.+ .++.+|..+++++++++||++||.++. ..+++++||+.+++|+.++.+ |.+|..+++++++++||
T Consensus 303 t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iy 381 (470)
T PLN02193 303 DKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIV 381 (470)
T ss_pred CCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEE
Confidence 999998822 367889999999999999999998654 368999999999999999754 88999999999999999
Q ss_pred EEcCCCCC---------CCCCeEEEEeCCCCceeecCCC------CcCCCcee
Q psy11333 434 AIGGSDGQ---------SPLNTVERFDPKLNRWTAMAPM------STRRKHLG 471 (482)
Q Consensus 434 v~GG~~~~---------~~~~~~~~y~~~~~~W~~~~~~------~~~r~~~~ 471 (482)
|+||.... ...+++++||+.+++|+.++.+ |.+|..++
T Consensus 382 v~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~ 434 (470)
T PLN02193 382 IFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTA 434 (470)
T ss_pred EECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCcccc
Confidence 99997531 2356899999999999998643 67776654
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=1.3e-30 Score=249.03 Aligned_cols=203 Identities=19% Similarity=0.267 Sum_probs=160.6
Q ss_pred CCCCCCCCCCCCCCCcEEEEeccccCCCCCceeEEEeC--CCCCeeeccCCC-CCCCceeEEEECCEEEEEecCCCCC--
Q psy11333 273 MQGPRTRPRKPSRRGEVLFAVGGWCSGDAISSVERYDP--QSSDWKIVAPMS-KRRCGVGVAVLNDLLYAVGGHDGQS-- 347 (482)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~d~--~~~~W~~~~~~~-~~~~~~~~~~~~~~iyv~GG~~~~~-- 347 (482)
+|.++.... +++++++|||+||.. .+.+++||+ .+++|..+++|| .+|.++++++++++|||+||.....
T Consensus 4 lp~~~~~~~-~~~~~~~vyv~GG~~----~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~ 78 (346)
T TIGR03547 4 LPVGFKNGT-GAIIGDKVYVGLGSA----GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSE 78 (346)
T ss_pred CCccccCce-EEEECCEEEEEcccc----CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCC
Confidence 555665533 445799999999963 257899996 678999999999 5899999999999999999985321
Q ss_pred ----CCCeEEEEeCCCCceeecCCCCCCcccceeEE-EECCEEEEEeccCCCc---------------------------
Q psy11333 348 ----YLNSIERYDPQTNQWSCDVAPTTSCRTSVGVA-VLDGFLYAVGGQDGVQ--------------------------- 395 (482)
Q Consensus 348 ----~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~--------------------------- 395 (482)
..+++++|||.+++|+.+..++|.+|..++++ +.+++||++||.+...
T Consensus 79 ~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (346)
T TIGR03547 79 GSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFS 158 (346)
T ss_pred CcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhC
Confidence 35789999999999999932566777777666 7899999999975321
Q ss_pred -------ccCeEEEEeCCCCceeecCCCCC-CccceEEEEECCEEEEEcCCCCCC-CCCeEEEEe--CCCCceeecCCCC
Q psy11333 396 -------CLNHVERYDPKENKWSRVAPMTT-RRLGVAVAVLGGFLYAIGGSDGQS-PLNTVERFD--PKLNRWTAMAPMS 464 (482)
Q Consensus 396 -------~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~~~~~~i~v~GG~~~~~-~~~~~~~y~--~~~~~W~~~~~~~ 464 (482)
..+++++|||.+++|+.+++||. +|..+++++++++|||+||..... ....++.|+ +++++|+.+++||
T Consensus 159 ~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~ 238 (346)
T TIGR03547 159 QPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLP 238 (346)
T ss_pred CChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCC
Confidence 13789999999999999999996 789999999999999999975432 223455555 5778999999998
Q ss_pred cCCC-------ceeEEEEcCCCC
Q psy11333 465 TRRK-------HLGCAVFVGDNG 480 (482)
Q Consensus 465 ~~r~-------~~~~~~~~~~~~ 480 (482)
.+|. ++++++++|+|.
T Consensus 239 ~~r~~~~~~~~~~~a~~~~~~Iy 261 (346)
T TIGR03547 239 PPKSSSQEGLAGAFAGISNGVLL 261 (346)
T ss_pred CCCCCccccccEEeeeEECCEEE
Confidence 8762 455778888773
No 16
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.97 E-value=4.1e-30 Score=242.90 Aligned_cols=180 Identities=16% Similarity=0.256 Sum_probs=153.4
Q ss_pred CCCCCcEEEEeccccCC----------CCCceeEEEe-CCCC-CeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCC
Q psy11333 283 PSRRGEVLFAVGGWCSG----------DAISSVERYD-PQSS-DWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLN 350 (482)
Q Consensus 283 ~~~~~~~l~~~GG~~~~----------~~~~~~~~~d-~~~~-~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~ 350 (482)
+.++++.||++||.... ...++++.|+ +..+ +|..+++||.+|.++++++++++||++||.++....+
T Consensus 9 ~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~ 88 (323)
T TIGR03548 9 AGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFS 88 (323)
T ss_pred eeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCCCce
Confidence 34579999999997522 2335788885 4333 7999999999999999999999999999988766678
Q ss_pred eEEEEeCCCCce----eecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCC-CCccceEE
Q psy11333 351 SIERYDPQTNQW----SCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMT-TRRLGVAV 425 (482)
Q Consensus 351 ~~~~yd~~~~~W----~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~ 425 (482)
++++||+.+++| +.+ +++|.+|..+++++++++||++||.......+++++||+.+++|+.+++|| .+|..+++
T Consensus 89 ~v~~~d~~~~~w~~~~~~~-~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~ 167 (323)
T TIGR03548 89 SVYRITLDESKEELICETI-GNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVC 167 (323)
T ss_pred eEEEEEEcCCceeeeeeEc-CCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceE
Confidence 999999999998 667 899999999999999999999999765555789999999999999999988 58999999
Q ss_pred EEECCEEEEEcCCCCCCCCCeEEEEeCCCCceeecCCCC
Q psy11333 426 AVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMS 464 (482)
Q Consensus 426 ~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~~~~~ 464 (482)
++++++|||+||.++.. ..++++||+++++|+.+++|+
T Consensus 168 ~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~ 205 (323)
T TIGR03548 168 VKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPT 205 (323)
T ss_pred EEECCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCC
Confidence 99999999999986532 456899999999999998763
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=2.3e-30 Score=248.90 Aligned_cols=203 Identities=17% Similarity=0.294 Sum_probs=160.0
Q ss_pred CCCCCCCCCCCCcEEEEeccccC------CCCCceeEEEeCCCCCeeeccC-CCCCCCceeEEE-ECCEEEEEecCCCC-
Q psy11333 276 PRTRPRKPSRRGEVLFAVGGWCS------GDAISSVERYDPQSSDWKIVAP-MSKRRCGVGVAV-LNDLLYAVGGHDGQ- 346 (482)
Q Consensus 276 ~~~~~~~~~~~~~~l~~~GG~~~------~~~~~~~~~~d~~~~~W~~~~~-~~~~~~~~~~~~-~~~~iyv~GG~~~~- 346 (482)
+|..+ ..+++++.||++||... ...++++++||+.+++|..+++ +|.++.+|++++ .+++||++||.+..
T Consensus 74 ~r~~~-~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~ 152 (376)
T PRK14131 74 PREQA-VAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNI 152 (376)
T ss_pred Ccccc-eEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHH
Confidence 44443 34567999999999753 1346789999999999999885 467777788777 79999999997531
Q ss_pred ---------------------------------CCCCeEEEEeCCCCceeecCCCCCC-cccceeEEEECCEEEEEeccC
Q psy11333 347 ---------------------------------SYLNSIERYDPQTNQWSCDVAPTTS-CRTSVGVAVLDGFLYAVGGQD 392 (482)
Q Consensus 347 ---------------------------------~~~~~~~~yd~~~~~W~~~~~~~~~-~r~~~~~~~~~~~lyv~GG~~ 392 (482)
...+++++|||.+++|+.+ +++|. +|.+++++..+++||++||..
T Consensus 153 ~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~-~~~p~~~~~~~a~v~~~~~iYv~GG~~ 231 (376)
T PRK14131 153 FDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNA-GESPFLGTAGSAVVIKGNKLWLINGEI 231 (376)
T ss_pred HHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeEC-CcCCCCCCCcceEEEECCEEEEEeeeE
Confidence 0246899999999999999 88885 788889999999999999964
Q ss_pred CC-cccCeEE--EEeCCCCceeecCCCCCCccc--------eEEEEECCEEEEEcCCCCCC-----------------CC
Q psy11333 393 GV-QCLNHVE--RYDPKENKWSRVAPMTTRRLG--------VAVAVLGGFLYAIGGSDGQS-----------------PL 444 (482)
Q Consensus 393 ~~-~~~~~~~--~yd~~~~~W~~~~~~~~~r~~--------~~~~~~~~~i~v~GG~~~~~-----------------~~ 444 (482)
.. .....++ .||+.+++|..+++||.+|.. +.+++++++|||+||.+... ..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~ 311 (376)
T PRK14131 232 KPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKS 311 (376)
T ss_pred CCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcce
Confidence 32 2233343 568899999999999988742 23567899999999975321 11
Q ss_pred CeEEEEeCCCCceeecCCCCcCCCceeEEEEcCCCC
Q psy11333 445 NTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVGDNG 480 (482)
Q Consensus 445 ~~~~~y~~~~~~W~~~~~~~~~r~~~~~~~~~~~~~ 480 (482)
..+++||+++++|+.+++||.+|.++++++++|+|.
T Consensus 312 ~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iy 347 (376)
T PRK14131 312 WSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVL 347 (376)
T ss_pred eehheEEecCCcccccCcCCCCccceEEEEeCCEEE
Confidence 357899999999999999999999999999998874
No 18
>KOG4350|consensus
Probab=99.97 E-value=6e-31 Score=233.74 Aligned_cols=225 Identities=27% Similarity=0.376 Sum_probs=207.5
Q ss_pred CcHHHHHHHHHHHHhcCCceeEEEEeCCeEEeceeEEeeccCHHHHHHhcCCCCcCccceEEEccCCHHHHHHHHHHhhc
Q psy11333 19 KHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDVAMDNLIEFCYT 98 (482)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~y~ 98 (482)
+..+++-+++.+++.+++++||+|++++++|++||.||++||.||++|++|+|.|+.+..|.+++...++|..+++|||+
T Consensus 26 ~i~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYt 105 (620)
T KOG4350|consen 26 AISNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYT 105 (620)
T ss_pred hhccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhh
Confidence 44456688899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ceeee---ccccHhhHHHHhcccChhhHHHHHHHHHhccCCCCCHHHHHHHHhhCCCHHHHHHHHHHHHHhHHHHhcccc
Q psy11333 99 SHITV---EESNVQTLLPAACLLQLVEIQDICCEFLKRQLDPSNCLGIRAFADTHSCRDLLRIADKFTQHNFQEVMESEE 175 (482)
Q Consensus 99 ~~~~~---~~~~~~~ll~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~i~~~~~~l~~~~~ 175 (482)
|.+.+ ..+-.++.+.+|+.|+.++|..+..+|+++.+..+|++.++..|..++..+|...|+.|+.+|..+++.++.
T Consensus 106 g~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~s 185 (620)
T KOG4350|consen 106 GKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPS 185 (620)
T ss_pred cceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcc
Confidence 98754 556688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCHHHHhHhhcCCCcccCChHHHHHHHHHHHhcChhHHHHHHHHhhccccCCCCChhhHhhcccCcccc
Q psy11333 176 FLILPVAQLVDIISSDELNVRSEEQVFNAIMSWLKYNVSERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLV 247 (482)
Q Consensus 176 f~~l~~~~l~~il~~~~l~~~~e~~v~~~~~~wi~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~~~~~~~ 247 (482)
|..|+++.|++++.+|.+. +-|..+|-++.+|.++|++. ..+.+++.+|+|.|+...|+..+.+..++
T Consensus 186 Fn~LSk~sL~e~l~RDsFf-ApE~~IFlAv~~W~~~Nske---~~k~~~~~VRLPLm~lteLLnvVRPsGll 253 (620)
T KOG4350|consen 186 FNRLSKDSLKELLARDSFF-APELKIFLAVRSWHQNNSKE---ASKVLLELVRLPLMTLTELLNVVRPSGLL 253 (620)
T ss_pred hhhhhHHHHHHHHhhhccc-chHHHHHHHHHHHHhcCchh---hHHHHHHHHhhhhccHHHHHhccCcccCc
Confidence 9999999999999999884 66999999999999998753 45678899999999999998887766654
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.96 E-value=2.5e-28 Score=234.87 Aligned_cols=203 Identities=20% Similarity=0.285 Sum_probs=158.4
Q ss_pred CCCCCCCCCCCCCCCCcEEEEeccccCCCCCceeEEEeCC--CCCeeeccCCC-CCCCceeEEEECCEEEEEecCCC-C-
Q psy11333 272 LMQGPRTRPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQ--SSDWKIVAPMS-KRRCGVGVAVLNDLLYAVGGHDG-Q- 346 (482)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~d~~--~~~W~~~~~~~-~~~~~~~~~~~~~~iyv~GG~~~-~- 346 (482)
.+|.++... +.+++++.||++||..+ +.++.||+. +++|..++++| .+|.++++++++++|||+||... .
T Consensus 24 ~lP~~~~~~-~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~ 98 (376)
T PRK14131 24 DLPVPFKNG-TGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNS 98 (376)
T ss_pred CCCcCccCC-eEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCC
Confidence 466666655 34557999999999632 357899986 47899999987 58999999999999999999864 1
Q ss_pred ----CCCCeEEEEeCCCCceeecCCC-CCCcccceeEEE-ECCEEEEEeccCCC--------------------------
Q psy11333 347 ----SYLNSIERYDPQTNQWSCDVAP-TTSCRTSVGVAV-LDGFLYAVGGQDGV-------------------------- 394 (482)
Q Consensus 347 ----~~~~~~~~yd~~~~~W~~~~~~-~~~~r~~~~~~~-~~~~lyv~GG~~~~-------------------------- 394 (482)
...+++++||+.+++|+.+ ++ .|.++..+++++ .+++||++||.+..
T Consensus 99 ~~~~~~~~~v~~YD~~~n~W~~~-~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~ 177 (376)
T PRK14131 99 EGSPQVFDDVYKYDPKTNSWQKL-DTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAY 177 (376)
T ss_pred CCceeEcccEEEEeCCCCEEEeC-CCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHH
Confidence 2357899999999999999 54 466777777666 89999999997531
Q ss_pred --------cccCeEEEEeCCCCceeecCCCCC-CccceEEEEECCEEEEEcCCCCCC-CCCeE--EEEeCCCCceeecCC
Q psy11333 395 --------QCLNHVERYDPKENKWSRVAPMTT-RRLGVAVAVLGGFLYAIGGSDGQS-PLNTV--ERFDPKLNRWTAMAP 462 (482)
Q Consensus 395 --------~~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~~~~~~i~v~GG~~~~~-~~~~~--~~y~~~~~~W~~~~~ 462 (482)
...+++++||+.+++|+.++++|. +|..++++..+++||++||..... ...++ +.||+++++|+.+++
T Consensus 178 ~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 257 (376)
T PRK14131 178 FDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD 257 (376)
T ss_pred hcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC
Confidence 024689999999999999999996 788899999999999999974322 22334 356788999999999
Q ss_pred CCcCCCc--------eeEEEEcCCCC
Q psy11333 463 MSTRRKH--------LGCAVFVGDNG 480 (482)
Q Consensus 463 ~~~~r~~--------~~~~~~~~~~~ 480 (482)
||.+|.+ +.+++++++|.
T Consensus 258 ~p~~~~~~~~~~~~~~~a~~~~~~iy 283 (376)
T PRK14131 258 LPPAPGGSSQEGVAGAFAGYSNGVLL 283 (376)
T ss_pred CCCCCcCCcCCccceEeceeECCEEE
Confidence 9987742 22566777764
No 20
>KOG4693|consensus
Probab=99.96 E-value=9.7e-29 Score=208.46 Aligned_cols=206 Identities=22% Similarity=0.368 Sum_probs=172.1
Q ss_pred CCCCCCCCCCCCCCCcEEEEeccccC-CCCCceeEEEeCCCCCeeec---cCCCCCCCceeEEEECCEEEEEecCCC--C
Q psy11333 273 MQGPRTRPRKPSRRGEVLFAVGGWCS-GDAISSVERYDPQSSDWKIV---APMSKRRCGVGVAVLNDLLYAVGGHDG--Q 346 (482)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~GG~~~-~~~~~~~~~~d~~~~~W~~~---~~~~~~~~~~~~~~~~~~iyv~GG~~~--~ 346 (482)
.|-.|+++. .+..++++|++||+.+ .+..+.++.|||.+++|... +.+|..|.+|+++++++..||+||+.. +
T Consensus 75 VPyqRYGHt-vV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~ 153 (392)
T KOG4693|consen 75 VPYQRYGHT-VVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQ 153 (392)
T ss_pred cchhhcCce-EEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHH
Confidence 444556554 4557899999999985 67888999999999999653 468899999999999999999999854 4
Q ss_pred CCCCeEEEEeCCCCceeecC--CCCCCcccceeEEEECCEEEEEeccCC---------CcccCeEEEEeCCCCceeecCC
Q psy11333 347 SYLNSIERYDPQTNQWSCDV--APTTSCRTSVGVAVLDGFLYAVGGQDG---------VQCLNHVERYDPKENKWSRVAP 415 (482)
Q Consensus 347 ~~~~~~~~yd~~~~~W~~~~--~~~~~~r~~~~~~~~~~~lyv~GG~~~---------~~~~~~~~~yd~~~~~W~~~~~ 415 (482)
.+.++++++|..|.+|+.+. ..+|.=|..|+++++++.+|++||... ..+-+.+..+|.+|..|...++
T Consensus 154 ~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~ 233 (392)
T KOG4693|consen 154 RFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPE 233 (392)
T ss_pred hhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCC
Confidence 56789999999999999883 334445667899999999999999532 1234678899999999998873
Q ss_pred ---CCCCccceEEEEECCEEEEEcCCCCC--CCCCeEEEEeCCCCceeecC---CCCcCCCceeEEEEcCCC
Q psy11333 416 ---MTTRRLGVAVAVLGGFLYAIGGSDGQ--SPLNTVERFDPKLNRWTAMA---PMSTRRKHLGCAVFVGDN 479 (482)
Q Consensus 416 ---~~~~r~~~~~~~~~~~i~v~GG~~~~--~~~~~~~~y~~~~~~W~~~~---~~~~~r~~~~~~~~~~~~ 479 (482)
.|.+|..|++.++|++||++||+++. ...+++|+|||++..|..|. .-|.+|.-+.+++.++|+
T Consensus 234 ~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv 305 (392)
T KOG4693|consen 234 NTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKV 305 (392)
T ss_pred CCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEE
Confidence 58899999999999999999999884 46799999999999999984 568889888899999886
No 21
>KOG4693|consensus
Probab=99.95 E-value=7.9e-28 Score=202.98 Aligned_cols=206 Identities=22% Similarity=0.407 Sum_probs=175.4
Q ss_pred CCCCCCCCCCCCCcEEEEeccccCCCCC-----ceeEEEeCCCCCeeeccC-------------CCCCCCceeEEEECCE
Q psy11333 275 GPRTRPRKPSRRGEVLFAVGGWCSGDAI-----SSVERYDPQSSDWKIVAP-------------MSKRRCGVGVAVLNDL 336 (482)
Q Consensus 275 ~~~~~~~~~~~~~~~l~~~GG~~~~~~~-----~~~~~~d~~~~~W~~~~~-------------~~~~~~~~~~~~~~~~ 336 (482)
.||+.-++++.++..||.+||+..+... -+|..+|..+-+|..+++ .|..|++|+++.++++
T Consensus 11 GPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~ 90 (392)
T KOG4693|consen 11 GPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDK 90 (392)
T ss_pred CcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcce
Confidence 4677777788899999999998633211 279999999999998875 3557999999999999
Q ss_pred EEEEecCCC-CCCCCeEEEEeCCCCceeec--CCCCCCcccceeEEEECCEEEEEeccC--CCcccCeEEEEeCCCCcee
Q psy11333 337 LYAVGGHDG-QSYLNSIERYDPQTNQWSCD--VAPTTSCRTSVGVAVLDGFLYAVGGQD--GVQCLNHVERYDPKENKWS 411 (482)
Q Consensus 337 iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~--~~~~~~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~yd~~~~~W~ 411 (482)
+|++||.+. .+.-+..++|||++++|++. ..-.|.+|.+|+++++++.+|++||+. ...+.++++++|..|.+|.
T Consensus 91 ~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr 170 (392)
T KOG4693|consen 91 AYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWR 170 (392)
T ss_pred EEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeee
Confidence 999999876 45668899999999999964 456789999999999999999999975 3457889999999999999
Q ss_pred ecC---CCCCCccceEEEEECCEEEEEcCCCCC---------CCCCeEEEEeCCCCceeecC---CCCcCCCceeEEEEc
Q psy11333 412 RVA---PMTTRRLGVAVAVLGGFLYAIGGSDGQ---------SPLNTVERFDPKLNRWTAMA---PMSTRRKHLGCAVFV 476 (482)
Q Consensus 412 ~~~---~~~~~r~~~~~~~~~~~i~v~GG~~~~---------~~~~~~~~y~~~~~~W~~~~---~~~~~r~~~~~~~~~ 476 (482)
.+. .+|.-|..|++.++++.+||+||..+. .+.++|..+|..++.|..-+ -.|.+|..|++.+++
T Consensus 171 ~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYn 250 (392)
T KOG4693|consen 171 EMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYN 250 (392)
T ss_pred ehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEc
Confidence 875 677889999999999999999997542 24677899999999999875 468899999999999
Q ss_pred CCCC
Q psy11333 477 GDNG 480 (482)
Q Consensus 477 ~~~~ 480 (482)
|+++
T Consensus 251 g~~Y 254 (392)
T KOG4693|consen 251 GKMY 254 (392)
T ss_pred ceEE
Confidence 9874
No 22
>KOG0379|consensus
Probab=99.94 E-value=7.8e-26 Score=222.09 Aligned_cols=207 Identities=27% Similarity=0.417 Sum_probs=177.6
Q ss_pred CCCCCCCCCCCCCCCCcEEEEeccccCCCCCc--eeEEEeCCCCCeeecc---CCCCCCCceeEEEECCEEEEEecCCC-
Q psy11333 272 LMQGPRTRPRKPSRRGEVLFAVGGWCSGDAIS--SVERYDPQSSDWKIVA---PMSKRRCGVGVAVLNDLLYAVGGHDG- 345 (482)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~GG~~~~~~~~--~~~~~d~~~~~W~~~~---~~~~~~~~~~~~~~~~~iyv~GG~~~- 345 (482)
..|.+|..+.+.. .++++||+||........ +++.+|..+..|.... ..|.+|.+|.++.++++||++||.+.
T Consensus 56 ~~p~~R~~hs~~~-~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~ 134 (482)
T KOG0379|consen 56 VGPIPRAGHSAVL-IGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK 134 (482)
T ss_pred CCcchhhccceeE-ECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC
Confidence 3566777766554 599999999987554444 4999999999997653 57789999999999999999999884
Q ss_pred CCCCCeEEEEeCCCCceeec--CCCCCCcccceeEEEECCEEEEEeccCCCc-ccCeEEEEeCCCCceeecC---CCCCC
Q psy11333 346 QSYLNSIERYDPQTNQWSCD--VAPTTSCRTSVGVAVLDGFLYAVGGQDGVQ-CLNHVERYDPKENKWSRVA---PMTTR 419 (482)
Q Consensus 346 ~~~~~~~~~yd~~~~~W~~~--~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~---~~~~~ 419 (482)
....+++++||+.|.+|+.+ ...+|.+|.+|++++.+++|||+||.+... ..+++++||+++.+|..+. +.|.|
T Consensus 135 ~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p 214 (482)
T KOG0379|consen 135 YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP 214 (482)
T ss_pred CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCC
Confidence 45578999999999999987 244689999999999999999999987654 7899999999999999986 67889
Q ss_pred ccceEEEEECCEEEEEcCCC-CCCCCCeEEEEeCCCCceeec---CCCCcCCCceeEEEEcCCC
Q psy11333 420 RLGVAVAVLGGFLYAIGGSD-GQSPLNTVERFDPKLNRWTAM---APMSTRRKHLGCAVFVGDN 479 (482)
Q Consensus 420 r~~~~~~~~~~~i~v~GG~~-~~~~~~~~~~y~~~~~~W~~~---~~~~~~r~~~~~~~~~~~~ 479 (482)
|.+|++++++++++++||.+ +..++++++++|..+.+|..+ +..|.+|.+|.+++.+.++
T Consensus 215 R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~ 278 (482)
T KOG0379|consen 215 RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHL 278 (482)
T ss_pred CCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEE
Confidence 99999999999999999998 667899999999999999966 4789999999999776643
No 23
>KOG0379|consensus
Probab=99.92 E-value=8e-24 Score=207.92 Aligned_cols=204 Identities=23% Similarity=0.379 Sum_probs=174.0
Q ss_pred CCCCCCCCCCCCCCCcEEEEecccc-CCCCCceeEEEeCCCCCeeecc---CCCCCCCceeEEEECCEEEEEecCCCCC-
Q psy11333 273 MQGPRTRPRKPSRRGEVLFAVGGWC-SGDAISSVERYDPQSSDWKIVA---PMSKRRCGVGVAVLNDLLYAVGGHDGQS- 347 (482)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~GG~~-~~~~~~~~~~~d~~~~~W~~~~---~~~~~~~~~~~~~~~~~iyv~GG~~~~~- 347 (482)
.|.+|.++..+ +++++||++||.. .....++++.||+.+++|..+. .+|.+|.+|++++.++++||+||.+...
T Consensus 109 ~p~~r~g~~~~-~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~ 187 (482)
T KOG0379|consen 109 EPSPRYGHSLS-AVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD 187 (482)
T ss_pred CCCcccceeEE-EECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc
Confidence 45566665544 4689999999987 3667789999999999998764 4789999999999999999999998765
Q ss_pred CCCeEEEEeCCCCceeec--CCCCCCcccceeEEEECCEEEEEeccC-CCcccCeEEEEeCCCCceeecC---CCCCCcc
Q psy11333 348 YLNSIERYDPQTNQWSCD--VAPTTSCRTSVGVAVLDGFLYAVGGQD-GVQCLNHVERYDPKENKWSRVA---PMTTRRL 421 (482)
Q Consensus 348 ~~~~~~~yd~~~~~W~~~--~~~~~~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~ 421 (482)
..+++++||+.+.+|.++ ..+.|.||+.|++++.+++++++||.. +..++++++.+|+.+.+|..++ .+|.||+
T Consensus 188 ~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~ 267 (482)
T KOG0379|consen 188 SLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRS 267 (482)
T ss_pred ceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcc
Confidence 789999999999999987 456788999999999999999999987 6778999999999999999765 6899999
Q ss_pred ceEEEEECCEEEEEcCCCCC--CCCCeEEEEeCCCCceeecCCC----CcCCCceeEEEEcC
Q psy11333 422 GVAVAVLGGFLYAIGGSDGQ--SPLNTVERFDPKLNRWTAMAPM----STRRKHLGCAVFVG 477 (482)
Q Consensus 422 ~~~~~~~~~~i~v~GG~~~~--~~~~~~~~y~~~~~~W~~~~~~----~~~r~~~~~~~~~~ 477 (482)
+|.++..+.+++++||.... ..+.+++.||..++.|..+... |.+|..+.++.+..
T Consensus 268 ~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 329 (482)
T KOG0379|consen 268 GHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDE 329 (482)
T ss_pred eeeeEEECCEEEEEcCCcccccccccccccccccccceeeeeccccccccccccccceeecc
Confidence 99999999999999998764 3688999999999999998543 55777766655443
No 24
>KOG1230|consensus
Probab=99.91 E-value=7.5e-23 Score=183.23 Aligned_cols=206 Identities=21% Similarity=0.322 Sum_probs=166.4
Q ss_pred CCCCCCCCCCCCCC-CCcEEEEecccc-C---CCCCceeEEEeCCCCCeeec--cCCCCCCCceeEEEE-CCEEEEEecC
Q psy11333 272 LMQGPRTRPRKPSR-RGEVLFAVGGWC-S---GDAISSVERYDPQSSDWKIV--APMSKRRCGVGVAVL-NDLLYAVGGH 343 (482)
Q Consensus 272 ~~~~~~~~~~~~~~-~~~~l~~~GG~~-~---~~~~~~~~~~d~~~~~W~~~--~~~~~~~~~~~~~~~-~~~iyv~GG~ 343 (482)
..|+||..++..+. ..+.|+++||.. + ....++++.||..+++|..+ |..|.||+.|.++++ .|.+|++||-
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGE 141 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGE 141 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccc
Confidence 36678877765443 246999999975 2 23557899999999999876 467889999999887 4899999994
Q ss_pred CC--C--C--CCCeEEEEeCCCCceeec-CCCCCCcccceeEEEECCEEEEEeccCC----CcccCeEEEEeCCCCceee
Q psy11333 344 DG--Q--S--YLNSIERYDPQTNQWSCD-VAPTTSCRTSVGVAVLDGFLYAVGGQDG----VQCLNHVERYDPKENKWSR 412 (482)
Q Consensus 344 ~~--~--~--~~~~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~----~~~~~~~~~yd~~~~~W~~ 412 (482)
=. + . -.++.|.+|..+++|+++ .+.-|.||++|-++++..+|+++||+.. ..++|++++||+.+-+|..
T Consensus 142 faSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~K 221 (521)
T KOG1230|consen 142 FASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSK 221 (521)
T ss_pred cCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeee
Confidence 21 1 1 246899999999999998 3556899999999999999999999642 3478999999999999999
Q ss_pred cCC---CCCCccceEEEEE-CCEEEEEcCCCCC---------CCCCeEEEEeCCC-----CceeecC---CCCcCCCcee
Q psy11333 413 VAP---MTTRRLGVAVAVL-GGFLYAIGGSDGQ---------SPLNTVERFDPKL-----NRWTAMA---PMSTRRKHLG 471 (482)
Q Consensus 413 ~~~---~~~~r~~~~~~~~-~~~i~v~GG~~~~---------~~~~~~~~y~~~~-----~~W~~~~---~~~~~r~~~~ 471 (482)
+.+ .|.||+++.+.+. .|.|||.||++.. ...++++.++|.+ -+|+.+. --|.||.+++
T Consensus 222 lepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfs 301 (521)
T KOG1230|consen 222 LEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFS 301 (521)
T ss_pred ccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCcee
Confidence 874 4899999999988 9999999998532 2457889999987 4688874 3489999999
Q ss_pred EEEEcC
Q psy11333 472 CAVFVG 477 (482)
Q Consensus 472 ~~~~~~ 477 (482)
+++..+
T Consensus 302 v~va~n 307 (521)
T KOG1230|consen 302 VAVAKN 307 (521)
T ss_pred EEEecC
Confidence 988765
No 25
>KOG2075|consensus
Probab=99.90 E-value=6.8e-23 Score=187.28 Aligned_cols=226 Identities=24% Similarity=0.389 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHHhcCCceeEEEEeCC-----eEEeceeEEeeccCHHHHHHhcCCCCcCccceEEEccCCHHHHHHHHHH
Q psy11333 21 PRVVLSEVSALRRHRELCDVVLNVGA-----RKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDVAMDNLIEF 95 (482)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~Dv~i~~~~-----~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~ 95 (482)
.+.+......+++++..+|+.|++++ .++++||.+|+..|++|++|++|++.++...+|.++++.+.+|..+++|
T Consensus 98 ~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~f 177 (521)
T KOG2075|consen 98 KETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRF 177 (521)
T ss_pred hhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHH
Confidence 45678888899999999999999983 5799999999999999999999999999777899999999999999999
Q ss_pred hhcCeeeeccccHhhHHHHhcccChhhHHHHHHHHHhccCCCCCHHHH-HHHHhhCCCHHHHHHHHHHHHHhHHHHhccc
Q psy11333 96 CYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLDPSNCLGI-RAFADTHSCRDLLRIADKFTQHNFQEVMESE 174 (482)
Q Consensus 96 ~y~~~~~~~~~~~~~ll~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~L~~~~~~~i~~~~~~l~~~~ 174 (482)
+|+.++.+..++++.++.+|++|.++.|.+.|.+++..++...+.+.. .+.+..+..++|.+.|++-|..++++.+..+
T Consensus 178 lYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~E 257 (521)
T KOG2075|consen 178 LYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPE 257 (521)
T ss_pred HhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCcc
Confidence 999999999999999999999999999999999999999888776554 4559999999999999999999999999999
Q ss_pred ccccCC--HHHHhHhhcCCCcccCChHHHHHHHHHHHhcC---------hhHHHHHHHHhhccccCCCCChhhHhhcccC
Q psy11333 175 EFLILP--VAQLVDIISSDELNVRSEEQVFNAIMSWLKYN---------VSERRQHLAQVLQHVRLPLLSPKFLVGTVGS 243 (482)
Q Consensus 175 ~f~~l~--~~~l~~il~~~~l~~~~e~~v~~~~~~wi~~~---------~~~~~~~~~~l~~~~r~~~~~~~~l~~~~~~ 243 (482)
.|..+. .+.+.+++.++.+.++ |..+|+++.+|.... ...+..++...+..+||+.|..+.+...+..
T Consensus 258 Gf~did~~~dt~~evl~r~~l~~~-e~~lfeA~lkw~~~e~~rs~~~~~~~~~~~vl~~~l~lirfp~m~~Eefa~~~e~ 336 (521)
T KOG2075|consen 258 GFCDIDSTRDTYEEVLRRDTLEAR-EFRLFEAALKWAEAECQRSGGPVNGQNKRKVLGRALSLIRFPFMNIEEFARGVEQ 336 (521)
T ss_pred ceeehhhHHHHHHHHHhhcccchh-HHHHHHHHHhhccCcchhhcCCCCccchhhhhhheeeeecccccchhhhccCccc
Confidence 999888 9999999999999876 999999999998742 2334467888999999999999888766555
Q ss_pred cccc
Q psy11333 244 DLLV 247 (482)
Q Consensus 244 ~~~~ 247 (482)
..+.
T Consensus 337 sgIl 340 (521)
T KOG2075|consen 337 SGIL 340 (521)
T ss_pred cCCc
Confidence 4443
No 26
>KOG1230|consensus
Probab=99.86 E-value=4.3e-21 Score=172.02 Aligned_cols=199 Identities=21% Similarity=0.313 Sum_probs=159.3
Q ss_pred HHHHhcCCCCCCCCCCCCCCCCCCCCCCcEEEEeccccC------CCCCceeEEEeCCCCCeeecc--CCCCCCCceeEE
Q psy11333 260 AKNYLLLPQERPLMQGPRTRPRKPSRRGEVLFAVGGWCS------GDAISSVERYDPQSSDWKIVA--PMSKRRCGVGVA 331 (482)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GG~~~------~~~~~~~~~~d~~~~~W~~~~--~~~~~~~~~~~~ 331 (482)
...|..+.. +..|.||..+.+++...|.+|++||... --..+++|.||..+++|+++. .-|.||++|.++
T Consensus 107 ~~eWkk~~s--pn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMv 184 (521)
T KOG1230|consen 107 KNEWKKVVS--PNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMV 184 (521)
T ss_pred ccceeEecc--CCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeE
Confidence 345644422 1466788887777777789999999751 134578999999999998874 578999999999
Q ss_pred EECCEEEEEecCCC----CCCCCeEEEEeCCCCceeecCCCC--CCcccceeEEEE-CCEEEEEeccC---------CCc
Q psy11333 332 VLNDLLYAVGGHDG----QSYLNSIERYDPQTNQWSCDVAPT--TSCRTSVGVAVL-DGFLYAVGGQD---------GVQ 395 (482)
Q Consensus 332 ~~~~~iyv~GG~~~----~~~~~~~~~yd~~~~~W~~~~~~~--~~~r~~~~~~~~-~~~lyv~GG~~---------~~~ 395 (482)
+..++|+++||.-. ..+.|++++||..+-+|.++.++- |.||+++.+.+. +|.|||.||+. .+.
T Consensus 185 awK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~ 264 (521)
T KOG1230|consen 185 AWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGT 264 (521)
T ss_pred EeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCc
Confidence 99999999999632 235799999999999999994444 899999999988 99999999963 123
Q ss_pred ccCeEEEEeCCC-----CceeecCC---CCCCccceEEEEE-CCEEEEEcCCCC---------CCCCCeEEEEeCCCCce
Q psy11333 396 CLNHVERYDPKE-----NKWSRVAP---MTTRRLGVAVAVL-GGFLYAIGGSDG---------QSPLNTVERFDPKLNRW 457 (482)
Q Consensus 396 ~~~~~~~yd~~~-----~~W~~~~~---~~~~r~~~~~~~~-~~~i~v~GG~~~---------~~~~~~~~~y~~~~~~W 457 (482)
..++++.++|.+ =.|+.+.+ -|.||.++++++. +++-+.+||.-+ ....+++|.||...++|
T Consensus 265 ~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW 344 (521)
T KOG1230|consen 265 RHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRW 344 (521)
T ss_pred eeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchh
Confidence 457899999987 36888875 4899999999988 669999999633 12578999999999999
Q ss_pred eec
Q psy11333 458 TAM 460 (482)
Q Consensus 458 ~~~ 460 (482)
...
T Consensus 345 ~~~ 347 (521)
T KOG1230|consen 345 SEG 347 (521)
T ss_pred hHh
Confidence 875
No 27
>KOG4682|consensus
Probab=99.81 E-value=3.4e-19 Score=159.27 Aligned_cols=181 Identities=23% Similarity=0.338 Sum_probs=171.3
Q ss_pred HHHHhcCCceeEEEEeCCeEEeceeEEeeccCHHHHHHhcCCCCcCccceEEE----ccCCHHHHHHHHHHhhcCeeeec
Q psy11333 29 SALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTI----RDIDDVAMDNLIEFCYTSHITVE 104 (482)
Q Consensus 29 ~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~~i~l----~~~~~~~~~~~l~~~y~~~~~~~ 104 (482)
..++.++.-|||++.+=|+++++||.-|. .|+||+.||+|.++|++.+.|.+ ++++..++..++.-+|..++.++
T Consensus 61 q~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~ 139 (488)
T KOG4682|consen 61 QNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIK 139 (488)
T ss_pred HHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheecc
Confidence 56888999999999999999999999998 79999999999999999998777 57899999999999999999999
Q ss_pred cccHhhHHHHhcccChhhHHHHHHHHHhccCCCCCHHHHHHHHhhCCCHHHHHHHHHHHHHhHHHHhcccccccCCHHHH
Q psy11333 105 ESNVQTLLPAACLLQLVEIQDICCEFLKRQLDPSNCLGIRAFADTHSCRDLLRIADKFTQHNFQEVMESEEFLILPVAQL 184 (482)
Q Consensus 105 ~~~~~~ll~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~i~~~~~~l~~~~~f~~l~~~~l 184 (482)
.+.++.++.+|.+++++.|.+.|.+.|.+++++.+++..+..+..|+...+.+.|.+|+..++-.+.....+..++.+.+
T Consensus 140 l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~~Lm 219 (488)
T KOG4682|consen 140 LSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISINLM 219 (488)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888889999999
Q ss_pred hHhhcCCCcccCC-hHHHHHHHHHHHh
Q psy11333 185 VDIISSDELNVRS-EEQVFNAIMSWLK 210 (482)
Q Consensus 185 ~~il~~~~l~~~~-e~~v~~~~~~wi~ 210 (482)
..++.+++|.+-+ |-+++..+..|+-
T Consensus 220 ~~ll~SpnLfvmq~EfdLyttlk~Wmf 246 (488)
T KOG4682|consen 220 KQLLGSPNLFVMQVEFDLYTTLKKWMF 246 (488)
T ss_pred HHHhCCCCeEEEEeeehHHHHHHHHHH
Confidence 9999999986655 9999999999964
No 28
>KOG4152|consensus
Probab=99.80 E-value=8.5e-19 Score=161.30 Aligned_cols=196 Identities=16% Similarity=0.264 Sum_probs=155.3
Q ss_pred CCCCcEEEEeccccC-CCCCceeEEEeCCCCCeeecc-------CCCCCCCceeEEEECCEEEEEecCCC---------C
Q psy11333 284 SRRGEVLFAVGGWCS-GDAISSVERYDPQSSDWKIVA-------PMSKRRCGVGVAVLNDLLYAVGGHDG---------Q 346 (482)
Q Consensus 284 ~~~~~~l~~~GG~~~-~~~~~~~~~~d~~~~~W~~~~-------~~~~~~~~~~~~~~~~~iyv~GG~~~---------~ 346 (482)
+..+.+||+|||+.+ +.+.+++|.+....=.|+++- ++|-||-+|+-..++++-|+|||..+ .
T Consensus 88 vcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvP 167 (830)
T KOG4152|consen 88 VCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVP 167 (830)
T ss_pred EecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccc
Confidence 345789999999874 456666665555555666652 36789999999999999999999532 1
Q ss_pred CCCCeEEEEeCCCCc----eeec--CCCCCCcccceeEEEE------CCEEEEEeccCCCcccCeEEEEeCCCCceeecC
Q psy11333 347 SYLNSIERYDPQTNQ----WSCD--VAPTTSCRTSVGVAVL------DGFLYAVGGQDGVQCLNHVERYDPKENKWSRVA 414 (482)
Q Consensus 347 ~~~~~~~~yd~~~~~----W~~~--~~~~~~~r~~~~~~~~------~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 414 (482)
.++++.|..+...+. |... ...+|.+|..|.++++ .-++||+||+.+- .+.++|-+|+.|-.|.+..
T Consensus 168 rYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W~kp~ 246 (830)
T KOG4152|consen 168 RYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTLTWNKPS 246 (830)
T ss_pred hhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecceeeccccc
Confidence 256888888887543 8854 4678999999999887 3579999998764 4789999999999999875
Q ss_pred ---CCCCCccceEEEEECCEEEEEcCCCC-----C---------CCCCeEEEEeCCCCceeecC-------CCCcCCCce
Q psy11333 415 ---PMTTRRLGVAVAVLGGFLYAIGGSDG-----Q---------SPLNTVERFDPKLNRWTAMA-------PMSTRRKHL 470 (482)
Q Consensus 415 ---~~~~~r~~~~~~~~~~~i~v~GG~~~-----~---------~~~~~~~~y~~~~~~W~~~~-------~~~~~r~~~ 470 (482)
-.|.||+-|++.++++++||+||+-. . ...+++-++|.++..|+.+- ..|.+|.+|
T Consensus 247 ~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGH 326 (830)
T KOG4152|consen 247 LSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGH 326 (830)
T ss_pred ccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccc
Confidence 46889999999999999999999621 0 13566789999999999872 379999999
Q ss_pred eEEEEcCCCC
Q psy11333 471 GCAVFVGDNG 480 (482)
Q Consensus 471 ~~~~~~~~~~ 480 (482)
.+++++.+++
T Consensus 327 CAvAigtRlY 336 (830)
T KOG4152|consen 327 CAVAIGTRLY 336 (830)
T ss_pred eeEEeccEEE
Confidence 9999998764
No 29
>KOG4152|consensus
Probab=99.77 E-value=2.5e-18 Score=158.21 Aligned_cols=214 Identities=16% Similarity=0.239 Sum_probs=164.3
Q ss_pred HHhcCCCCCCCCCCCCCCCCCCCCCCcEEEEeccccCCCCCceeEEEeCCCCCeee---ccCCCCCCCceeEEEECCEEE
Q psy11333 262 NYLLLPQERPLMQGPRTRPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKI---VAPMSKRRCGVGVAVLNDLLY 338 (482)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~---~~~~~~~~~~~~~~~~~~~iy 338 (482)
+|......-...|.+|-+++. +++...|++|||-. .+..+++..||..+++|.. .++.|.+.+.|+.+..+.+||
T Consensus 18 rWrrV~~~tGPvPrpRHGHRA-VaikELiviFGGGN-EGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtril 95 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRA-VAIKELIVIFGGGN-EGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRIL 95 (830)
T ss_pred ceEEEecccCCCCCccccchh-eeeeeeEEEecCCc-ccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEE
Confidence 566554433346677777774 45788899998843 4566889999999999953 357888888899888899999
Q ss_pred EEecCCCCC-CCCeEEEEeCCCCce--eecC------CCCCCcccceeEEEECCEEEEEeccCCC---------cccCeE
Q psy11333 339 AVGGHDGQS-YLNSIERYDPQTNQW--SCDV------APTTSCRTSVGVAVLDGFLYAVGGQDGV---------QCLNHV 400 (482)
Q Consensus 339 v~GG~~~~~-~~~~~~~yd~~~~~W--~~~~------~~~~~~r~~~~~~~~~~~lyv~GG~~~~---------~~~~~~ 400 (482)
+|||..+.+ +.++ .|.....+| +++. .++|.||-+|+...++++-|++||..+. .+++++
T Consensus 96 vFGGMvEYGkYsNd--LYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDl 173 (830)
T KOG4152|consen 96 VFGGMVEYGKYSND--LYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDL 173 (830)
T ss_pred EEccEeeeccccch--HHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcce
Confidence 999975543 3444 455565554 5551 2467899999999999999999995321 357788
Q ss_pred EEEeCCCC----ceeecC---CCCCCccceEEEEE------CCEEEEEcCCCCCCCCCeEEEEeCCCCceeec---CCCC
Q psy11333 401 ERYDPKEN----KWSRVA---PMTTRRLGVAVAVL------GGFLYAIGGSDGQSPLNTVERFDPKLNRWTAM---APMS 464 (482)
Q Consensus 401 ~~yd~~~~----~W~~~~---~~~~~r~~~~~~~~------~~~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~---~~~~ 464 (482)
+..++... .|+..- ..|.||..|.++++ ..++||+||.+|. .+.++|.+|.++-.|.+. +-.|
T Consensus 174 Y~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W~kp~~~G~~P 252 (830)
T KOG4152|consen 174 YILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTLTWNKPSLSGVAP 252 (830)
T ss_pred EEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecceeecccccccCCCC
Confidence 88877633 587653 68999999999988 3379999999875 488999999999999886 3567
Q ss_pred cCCCceeEEEEcCCCC
Q psy11333 465 TRRKHLGCAVFVGDNG 480 (482)
Q Consensus 465 ~~r~~~~~~~~~~~~~ 480 (482)
.||..|+++.+++|.+
T Consensus 253 lPRSLHsa~~IGnKMy 268 (830)
T KOG4152|consen 253 LPRSLHSATTIGNKMY 268 (830)
T ss_pred CCcccccceeecceeE
Confidence 8999999999999853
No 30
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.76 E-value=3e-18 Score=135.30 Aligned_cols=107 Identities=34% Similarity=0.665 Sum_probs=96.4
Q ss_pred HHHHHhcCCceeEEEEeC-CeEEeceeEEeeccCHHHHHHhcCC-CCcCccceEEEccCCHHHHHHHHHHhhcCeeeec-
Q psy11333 28 VSALRRHRELCDVVLNVG-ARKIFAHRVVLSACSPYFRAMFTGE-LAESRQAEVTIRDIDDVAMDNLIEFCYTSHITVE- 104 (482)
Q Consensus 28 ~~~~~~~~~~~Dv~i~~~-~~~~~~hk~iL~~~S~~F~~~~~~~-~~e~~~~~i~l~~~~~~~~~~~l~~~y~~~~~~~- 104 (482)
|+++++++.++|++|.++ +.+|++||.+|+++|+||+.++++. ..+.....+.+.++++.+|..+++|+|++.+.++
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCH
Confidence 578899999999999999 8999999999999999999999998 5666555789999999999999999999999888
Q ss_pred cccHhhHHHHhcccChhhHHHHHHHHHhcc
Q psy11333 105 ESNVQTLLPAACLLQLVEIQDICCEFLKRQ 134 (482)
Q Consensus 105 ~~~~~~ll~~a~~~~~~~L~~~~~~~i~~~ 134 (482)
.+++.+++.+|++|+++.|++.|.+++.++
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999999764
No 31
>KOG4591|consensus
Probab=99.75 E-value=2e-18 Score=139.38 Aligned_cols=178 Identities=22% Similarity=0.376 Sum_probs=154.1
Q ss_pred ceeeecCCcHHHHHHHHHHHHhcCCceeEEEEeC---CeEEeceeEEeeccCHHHHHHhcCCCCcCccceEEEccCCHHH
Q psy11333 12 CLTHTSDKHPRVVLSEVSALRRHRELCDVVLNVG---ARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDVA 88 (482)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~i~~~---~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~ 88 (482)
|..-+....+++++.-..++++.+.|||++|.+. .+.+++||.+|++||++.+..--|. .......+.++++++
T Consensus 41 ~keSs~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~WkfaN~~d---ekse~~~~dDad~Ea 117 (280)
T KOG4591|consen 41 CKESSPDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKFANGGD---EKSEELDLDDADFEA 117 (280)
T ss_pred hccCCchhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhhccCCC---cchhhhcccccCHHH
Confidence 4444556778899999999999999999999998 4679999999999999987543221 223447789999999
Q ss_pred HHHHHHHhhcCeeee--ccccHhhHHHHhcccChhhHHHHHHHHHhccCCCCCHHHHHHHHhhCCCHHHHHHHHHHHHHh
Q psy11333 89 MDNLIEFCYTSHITV--EESNVQTLLPAACLLQLVEIQDICCEFLKRQLDPSNCLGIRAFADTHSCRDLLRIADKFTQHN 166 (482)
Q Consensus 89 ~~~~l~~~y~~~~~~--~~~~~~~ll~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~i~~~ 166 (482)
|..+++|+|+.++.+ +.+-..++.++|+.|+++-|++.|++-+...+...||+.++++|+..+...|...|...|..+
T Consensus 118 ~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~ 197 (280)
T KOG4591|consen 118 FHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGA 197 (280)
T ss_pred HHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 999999999998765 445678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccCCHHHHhHhhcCCCc
Q psy11333 167 FQEVMESEEFLILPVAQLVDIISSDEL 193 (482)
Q Consensus 167 ~~~l~~~~~f~~l~~~~l~~il~~~~l 193 (482)
++++ ...+|.+++...|.+++++..-
T Consensus 198 W~dL-~~a~FaqMs~aLLYklId~kTe 223 (280)
T KOG4591|consen 198 WDDL-GKADFAQMSAALLYKLIDGKTE 223 (280)
T ss_pred cccc-ChHHHHhccHHHHHHHHcCCCc
Confidence 9887 5678999999999999987543
No 32
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.64 E-value=5.6e-15 Score=131.40 Aligned_cols=214 Identities=19% Similarity=0.273 Sum_probs=153.5
Q ss_pred HHHHhcCCCCCCCCCCCCCCCCCCCCCCcEEEEeccccC-----CCCCceeEEEeCCCCCeeecc-CCCCCCCceeEEEE
Q psy11333 260 AKNYLLLPQERPLMQGPRTRPRKPSRRGEVLFAVGGWCS-----GDAISSVERYDPQSSDWKIVA-PMSKRRCGVGVAVL 333 (482)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GG~~~-----~~~~~~~~~~d~~~~~W~~~~-~~~~~~~~~~~~~~ 333 (482)
...|..... .|...+.....+.++++||++||... .+..+++++|||.+++|+.+. ..|+.-.+++++.+
T Consensus 69 ~k~W~~~a~----FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~ 144 (381)
T COG3055 69 GKGWTKIAD----FPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSL 144 (381)
T ss_pred CCCceEccc----CCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEec
Confidence 345655442 34444444556678999999999752 234578999999999999886 46677778888888
Q ss_pred CC-EEEEEecCCCC----------------------------------CCCCeEEEEeCCCCceeecCCCCCCcccceeE
Q psy11333 334 ND-LLYAVGGHDGQ----------------------------------SYLNSIERYDPQTNQWSCDVAPTTSCRTSVGV 378 (482)
Q Consensus 334 ~~-~iyv~GG~~~~----------------------------------~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~ 378 (482)
++ +||++||++.+ .....+..|+|.+++|+.+...+-.++.+.++
T Consensus 145 ~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~ 224 (381)
T COG3055 145 NGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAV 224 (381)
T ss_pred CCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcce
Confidence 77 99999996411 12346889999999999983344467777666
Q ss_pred EEECCEEEEEeccC-CCcccCeEEEEeCC--CCceeecCCCCCCcc-------ceEEEEECCEEEEEcCCCCC-------
Q psy11333 379 AVLDGFLYAVGGQD-GVQCLNHVERYDPK--ENKWSRVAPMTTRRL-------GVAVAVLGGFLYAIGGSDGQ------- 441 (482)
Q Consensus 379 ~~~~~~lyv~GG~~-~~~~~~~~~~yd~~--~~~W~~~~~~~~~r~-------~~~~~~~~~~i~v~GG~~~~------- 441 (482)
+.-++++.++-|.- ..-++..+..++.. .-+|..++++|.+-. ++-....++.+.|.||-+-.
T Consensus 225 ~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~ 304 (381)
T COG3055 225 VIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYK 304 (381)
T ss_pred eecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHH
Confidence 67788899998853 33345667777776 448999988776544 33334568899999994210
Q ss_pred ------------CCCCeEEEEeCCCCceeecCCCCcCCCceeEEEEcCCC
Q psy11333 442 ------------SPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVGDN 479 (482)
Q Consensus 442 ------------~~~~~~~~y~~~~~~W~~~~~~~~~r~~~~~~~~~~~~ 479 (482)
...++|+.+| ++.|+.++.||.++.+..++..++++
T Consensus 305 ~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG~s~~~nn~v 352 (381)
T COG3055 305 NGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYGVSLSYNNKV 352 (381)
T ss_pred hcccccccchhhhhhceEEEEc--CCceeeecccCCCccceEEEecCCcE
Confidence 1356788997 88999999999988888777666653
No 33
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.55 E-value=6e-15 Score=111.48 Aligned_cols=90 Identities=41% Similarity=0.762 Sum_probs=84.6
Q ss_pred eEEEEeCCeEEeceeEEeeccCHHHHHHhcCCCCcCccceEEEccCCHHHHHHHHHHhhcCeeeeccccHhhHHHHhccc
Q psy11333 39 DVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLL 118 (482)
Q Consensus 39 Dv~i~~~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ll~~a~~~ 118 (482)
|++|.+++++|++||.+|+++|+||+.|+.++..+.....+.+++.++..|+.+++|+|++.+.++..++.+++.+|++|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~ 80 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL 80 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999998887777789999999999999999999999988888999999999999
Q ss_pred ChhhHHHHHH
Q psy11333 119 QLVEIQDICC 128 (482)
Q Consensus 119 ~~~~L~~~~~ 128 (482)
++++|+..|.
T Consensus 81 ~~~~l~~~c~ 90 (90)
T smart00225 81 QIPGLVELCE 90 (90)
T ss_pred CcHHHHhhhC
Confidence 9999998773
No 34
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.52 E-value=3.6e-13 Score=120.02 Aligned_cols=183 Identities=22% Similarity=0.331 Sum_probs=134.2
Q ss_pred CCCCcEEEEeccccCCCCCceeEEEeC--CCCCeeeccCCC-CCCCceeEEEECCEEEEEecCCCCC-----CCCeEEEE
Q psy11333 284 SRRGEVLFAVGGWCSGDAISSVERYDP--QSSDWKIVAPMS-KRRCGVGVAVLNDLLYAVGGHDGQS-----YLNSIERY 355 (482)
Q Consensus 284 ~~~~~~l~~~GG~~~~~~~~~~~~~d~--~~~~W~~~~~~~-~~~~~~~~~~~~~~iyv~GG~~~~~-----~~~~~~~y 355 (482)
...++.+||.=|..+ ...+.+|. ..+.|+.+...| .+|....+++++++||++||..... ..+++++|
T Consensus 43 a~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y 118 (381)
T COG3055 43 ALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRY 118 (381)
T ss_pred ceecceEEEEeccCC----ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEe
Confidence 345778888756322 23455555 446899999877 6788888889999999999975432 36799999
Q ss_pred eCCCCceeecCCCCCCcccceeEEEECC-EEEEEeccCCC----------------------------------cccCeE
Q psy11333 356 DPQTNQWSCDVAPTTSCRTSVGVAVLDG-FLYAVGGQDGV----------------------------------QCLNHV 400 (482)
Q Consensus 356 d~~~~~W~~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~----------------------------------~~~~~~ 400 (482)
||.+++|.++....|.....+.+++.++ ++|++||.+.. .....+
T Consensus 119 ~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev 198 (381)
T COG3055 119 DPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEV 198 (381)
T ss_pred cCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccc
Confidence 9999999998444555666777788887 99999995310 113578
Q ss_pred EEEeCCCCceeecCCCC-CCccceEEEEECCEEEEEcCCCCCC-CCCeEEEEeCC--CCceeecCCCCcCCCce
Q psy11333 401 ERYDPKENKWSRVAPMT-TRRLGVAVAVLGGFLYAIGGSDGQS-PLNTVERFDPK--LNRWTAMAPMSTRRKHL 470 (482)
Q Consensus 401 ~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~~~~y~~~--~~~W~~~~~~~~~r~~~ 470 (482)
..|||.++.|..+...| .++++++.+.-++++.++-|+-... ....+..++.. .-+|..++++|.+....
T Consensus 199 ~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~ 272 (381)
T COG3055 199 LSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSN 272 (381)
T ss_pred cccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCC
Confidence 99999999999999666 6778766666788899998874433 23345566554 55899999888766544
No 35
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.52 E-value=2.6e-14 Score=110.91 Aligned_cols=102 Identities=45% Similarity=0.765 Sum_probs=92.1
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHhHHHHhcccccccCCHHHHhHhhcCCCcccCChHHHHHHHHHHHhcChhHHHHH
Q psy11333 140 CLGIRAFADTHSCRDLLRIADKFTQHNFQEVMESEEFLILPVAQLVDIISSDELNVRSEEQVFNAIMSWLKYNVSERRQH 219 (482)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~~~~~~i~~~~~~l~~~~~f~~l~~~~l~~il~~~~l~~~~e~~v~~~~~~wi~~~~~~~~~~ 219 (482)
|+.++.+|..+++.+|.+.|.+|+..||.++.++++|..+|.+.+..+++++++++.+|.++|+++.+|++++...+.+.
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~~r~~~ 80 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPENREEH 80 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHHHHTTT
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred HHHhhccccCCCCChhhHhhcc
Q psy11333 220 LAQVLQHVRLPLLSPKFLVGTV 241 (482)
Q Consensus 220 ~~~l~~~~r~~~~~~~~l~~~~ 241 (482)
+..+++++|++.|++..|...+
T Consensus 81 ~~~Ll~~iR~~~l~~~~L~~~v 102 (103)
T PF07707_consen 81 LKELLSCIRFPLLSPEELQNVV 102 (103)
T ss_dssp HHHHHCCCHHHCT-HHHHHHCC
T ss_pred HHHHHHhCCcccCCHHHHHHHH
Confidence 9999999999999999987653
No 36
>KOG0783|consensus
Probab=99.38 E-value=1.4e-12 Score=127.15 Aligned_cols=151 Identities=23% Similarity=0.320 Sum_probs=124.4
Q ss_pred CCceeEEEEeC-CeEEeceeEEeeccCHHHHHHhcCCCCcCccceEEEccCCHHHHHHHHHHhhcCe-ee-----ecccc
Q psy11333 35 RELCDVVLNVG-ARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDVAMDNLIEFCYTSH-IT-----VEESN 107 (482)
Q Consensus 35 ~~~~Dv~i~~~-~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~y~~~-~~-----~~~~~ 107 (482)
+..-|+.|.+. |+.++|||++|++|++||..||..-+.|+..=.+..-.+..+.++.+|+|+|+.. .. -..+-
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 45557777775 7779999999999999999999998888876334445556999999999999743 21 12344
Q ss_pred HhhHHHHhcccChhhHHHHHHHHHhccCCCCCHHHHHHHHhhCCCHHHHHHHHHHHHHhHHHHhcccccccCCHHHHh
Q psy11333 108 VQTLLPAACLLQLVEIQDICCEFLKRQLDPSNCLGIRAFADTHSCRDLLRIADKFTQHNFQEVMESEEFLILPVAQLV 185 (482)
Q Consensus 108 ~~~ll~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~i~~~~~~l~~~~~f~~l~~~~l~ 185 (482)
+.+++.+||.|.+.+|++.|+.-+.+.+...++-.++++|.-|++.+|...|++||..|+..+++--++..++-..|+
T Consensus 788 ~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~~dg~~LK 865 (1267)
T KOG0783|consen 788 MFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISEWDGFHLK 865 (1267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhhhcchHHH
Confidence 778999999999999999999999999999999999999999999999999999999998888776555544444444
No 37
>PF13964 Kelch_6: Kelch motif
Probab=99.37 E-value=1.6e-12 Score=85.43 Aligned_cols=49 Identities=43% Similarity=0.808 Sum_probs=46.0
Q ss_pred CccceEEEEECCEEEEEcCCCC-CCCCCeEEEEeCCCCceeecCCCCcCC
Q psy11333 419 RRLGVAVAVLGGFLYAIGGSDG-QSPLNTVERFDPKLNRWTAMAPMSTRR 467 (482)
Q Consensus 419 ~r~~~~~~~~~~~i~v~GG~~~-~~~~~~~~~y~~~~~~W~~~~~~~~~r 467 (482)
||.++++++++++|||+||..+ ....+++++||+++++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 6899999999999999999987 677899999999999999999999987
No 38
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.37 E-value=6.5e-12 Score=97.05 Aligned_cols=99 Identities=52% Similarity=0.875 Sum_probs=90.5
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHhHHHHhcccccccCCHHHHhHhhcCCCcccCChHHHHHHHHHHHhcChhHHHHH
Q psy11333 140 CLGIRAFADTHSCRDLLRIADKFTQHNFQEVMESEEFLILPVAQLVDIISSDELNVRSEEQVFNAIMSWLKYNVSERRQH 219 (482)
Q Consensus 140 ~~~~~~~~~~~~~~~L~~~~~~~i~~~~~~l~~~~~f~~l~~~~l~~il~~~~l~~~~e~~v~~~~~~wi~~~~~~~~~~ 219 (482)
|+.++.+|..+++..|.+.|.+|+..||..+.+.++|..||.+.+..+++++++++.+|..+|+++.+|++++...+. .
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~~~~~-~ 79 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDPERRR-H 79 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCHHHHH-H
Confidence 456778889999999999999999999999999999999999999999999999988899999999999999986655 7
Q ss_pred HHHhhccccCCCCChhhHhh
Q psy11333 220 LAQVLQHVRLPLLSPKFLVG 239 (482)
Q Consensus 220 ~~~l~~~~r~~~~~~~~l~~ 239 (482)
+..+++++|++.|++..+..
T Consensus 80 ~~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 80 LPELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred HHHHHHhCCCCCCCHHHHHh
Confidence 88999999999999987653
No 39
>PF13964 Kelch_6: Kelch motif
Probab=99.36 E-value=2e-12 Score=84.94 Aligned_cols=49 Identities=39% Similarity=0.722 Sum_probs=45.5
Q ss_pred CCCceeEEEECCEEEEEecCCC-CCCCCeEEEEeCCCCceeecCCCCCCcc
Q psy11333 324 RRCGVGVAVLNDLLYAVGGHDG-QSYLNSIERYDPQTNQWSCDVAPTTSCR 373 (482)
Q Consensus 324 ~~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~~r 373 (482)
||.+|++++++++|||+||... ....+++++||+++++|+++ ++||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQL-PPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEEC-CCCCCCC
Confidence 6889999999999999999987 56788999999999999999 9999887
No 40
>KOG2437|consensus
Probab=99.24 E-value=1.1e-11 Score=114.72 Aligned_cols=180 Identities=18% Similarity=0.277 Sum_probs=132.4
Q ss_pred CCCCCCCCCCCCCC-CcEEEEeccccCCCCCceeEEEeCCCCCeeecc---CCCCCCCceeEEEE--CCEEEEEecCCCC
Q psy11333 273 MQGPRTRPRKPSRR-GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVA---PMSKRRCGVGVAVL--NDLLYAVGGHDGQ 346 (482)
Q Consensus 273 ~~~~~~~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~---~~~~~~~~~~~~~~--~~~iyv~GG~~~~ 346 (482)
.|+.|.++...... ++.||++||+.+-+.+.+.|.|+...+.|..+. ..|-.|..|.++.- ..++|+.|-+-+.
T Consensus 257 ~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~s 336 (723)
T KOG2437|consen 257 RPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDS 336 (723)
T ss_pred CccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcccc
Confidence 44556666654333 469999999998888899999999999997653 48889999999885 4499999976332
Q ss_pred ------CCCCeEEEEeCCCCceeec---C--CCCCCcccceeEEEECCE--EEEEeccC--CC-cccCeEEEEeCCCCce
Q psy11333 347 ------SYLNSIERYDPQTNQWSCD---V--APTTSCRTSVGVAVLDGF--LYAVGGQD--GV-QCLNHVERYDPKENKW 410 (482)
Q Consensus 347 ------~~~~~~~~yd~~~~~W~~~---~--~~~~~~r~~~~~~~~~~~--lyv~GG~~--~~-~~~~~~~~yd~~~~~W 410 (482)
....+.|+||..++.|.-+ + ..-|...+.|.+++.+.+ +||+||.. .+ ......+.||.....|
T Consensus 337 S~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w 416 (723)
T KOG2437|consen 337 SVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTW 416 (723)
T ss_pred ccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccH
Confidence 2356899999999999976 1 244667788999998877 99999953 22 3456789999999999
Q ss_pred eecCC----------CCCCccceEEEEE--CCEEEEEcCCCCCCCCCeEEEEeC
Q psy11333 411 SRVAP----------MTTRRLGVAVAVL--GGFLYAIGGSDGQSPLNTVERFDP 452 (482)
Q Consensus 411 ~~~~~----------~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~y~~ 452 (482)
..+.. -...|.+|.+-.. +..+|++||......+.-..+|+.
T Consensus 417 ~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I 470 (723)
T KOG2437|consen 417 KLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDI 470 (723)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhccee
Confidence 88752 2345667776555 668999999654333333344543
No 41
>KOG2437|consensus
Probab=99.14 E-value=5.1e-11 Score=110.46 Aligned_cols=141 Identities=19% Similarity=0.293 Sum_probs=113.7
Q ss_pred CCCCCceeEEEECC--EEEEEecCCCCCCCCeEEEEeCCCCceeec--CCCCCCcccceeEEEEC--CEEEEEeccCC--
Q psy11333 322 SKRRCGVGVAVLND--LLYAVGGHDGQSYLNSIERYDPQTNQWSCD--VAPTTSCRTSVGVAVLD--GFLYAVGGQDG-- 393 (482)
Q Consensus 322 ~~~~~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--~~~~~~~r~~~~~~~~~--~~lyv~GG~~~-- 393 (482)
|..|.+|.++.-.+ .||+.||+++.....+.|.|+...+.|+.+ ....|-.|..|-++... .++|+.|-+-+
T Consensus 258 p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS 337 (723)
T KOG2437|consen 258 PGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSS 337 (723)
T ss_pred ccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccc
Confidence 56789999998744 999999999988888999999999999976 34567789889888754 59999997522
Q ss_pred ----CcccCeEEEEeCCCCceeecC------CCCCCccceEEEEECCE--EEEEcCCCC--C-CCCCeEEEEeCCCCcee
Q psy11333 394 ----VQCLNHVERYDPKENKWSRVA------PMTTRRLGVAVAVLGGF--LYAIGGSDG--Q-SPLNTVERFDPKLNRWT 458 (482)
Q Consensus 394 ----~~~~~~~~~yd~~~~~W~~~~------~~~~~r~~~~~~~~~~~--i~v~GG~~~--~-~~~~~~~~y~~~~~~W~ 458 (482)
.....++|+||..++.|..+. .-|...+.|.|++.+++ |||+||..- . ....-+|.||.....|.
T Consensus 338 ~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~ 417 (723)
T KOG2437|consen 338 VRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWK 417 (723)
T ss_pred cccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHH
Confidence 123468999999999999876 23566778999999887 999999632 2 24567999999999998
Q ss_pred ecCC
Q psy11333 459 AMAP 462 (482)
Q Consensus 459 ~~~~ 462 (482)
.++.
T Consensus 418 ~l~e 421 (723)
T KOG2437|consen 418 LLRE 421 (723)
T ss_pred HHHH
Confidence 8753
No 42
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.13 E-value=5.2e-11 Score=77.24 Aligned_cols=46 Identities=39% Similarity=0.733 Sum_probs=41.4
Q ss_pred CCCceeEEEECCEEEEEecCCC-CCCCCeEEEEeCCCCceeecCCCCC
Q psy11333 324 RRCGVGVAVLNDLLYAVGGHDG-QSYLNSIERYDPQTNQWSCDVAPTT 370 (482)
Q Consensus 324 ~~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~~ 370 (482)
||.+|++++++++||++||.+. ....+++++||+.+++|+.+ ++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL-PPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE-EEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEc-CCCC
Confidence 6899999999999999999987 66788999999999999999 7765
No 43
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.12 E-value=8.2e-11 Score=76.29 Aligned_cols=46 Identities=39% Similarity=0.724 Sum_probs=42.1
Q ss_pred cccceeEEEECCEEEEEeccCC-CcccCeEEEEeCCCCceeecCCCC
Q psy11333 372 CRTSVGVAVLDGFLYAVGGQDG-VQCLNHVERYDPKENKWSRVAPMT 417 (482)
Q Consensus 372 ~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~ 417 (482)
||..+++++++++||++||.++ ...++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6889999999999999999887 677899999999999999999886
No 44
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.09 E-value=2.4e-10 Score=74.46 Aligned_cols=47 Identities=36% Similarity=0.586 Sum_probs=43.1
Q ss_pred CCEEEEEcCCC--CCCCCCeEEEEeCCCCceeecCCCCcCCCceeEEEE
Q psy11333 429 GGFLYAIGGSD--GQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVF 475 (482)
Q Consensus 429 ~~~i~v~GG~~--~~~~~~~~~~y~~~~~~W~~~~~~~~~r~~~~~~~~ 475 (482)
|++|||+||.+ +...++++++||+.+++|+.++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 68999999998 566789999999999999999999999999999875
No 45
>smart00612 Kelch Kelch domain.
Probab=99.01 E-value=6.6e-10 Score=72.15 Aligned_cols=47 Identities=43% Similarity=0.792 Sum_probs=42.9
Q ss_pred EEEEEcCCCCCCCCCeEEEEeCCCCceeecCCCCcCCCceeEEEEcC
Q psy11333 431 FLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVG 477 (482)
Q Consensus 431 ~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~~~~~~~r~~~~~~~~~~ 477 (482)
+||++||.++....+++++||+.+++|+.+++||.+|..+++++++|
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999999776668899999999999999999999999999999875
No 46
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.98 E-value=1.6e-09 Score=70.53 Aligned_cols=46 Identities=41% Similarity=0.744 Sum_probs=41.6
Q ss_pred CccceEEEEECCEEEEEcCC---CCCCCCCeEEEEeCCCCceeecCCCC
Q psy11333 419 RRLGVAVAVLGGFLYAIGGS---DGQSPLNTVERFDPKLNRWTAMAPMS 464 (482)
Q Consensus 419 ~r~~~~~~~~~~~i~v~GG~---~~~~~~~~~~~y~~~~~~W~~~~~~~ 464 (482)
||.+|++++++++||++||+ ++....+++++||+++++|+.++++|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68999999999999999999 44557889999999999999999875
No 47
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.98 E-value=1.6e-09 Score=70.62 Aligned_cols=46 Identities=35% Similarity=0.590 Sum_probs=40.2
Q ss_pred CCCceeEEEECCEEEEEecC---CCCCCCCeEEEEeCCCCceeecCCCCC
Q psy11333 324 RRCGVGVAVLNDLLYAVGGH---DGQSYLNSIERYDPQTNQWSCDVAPTT 370 (482)
Q Consensus 324 ~~~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~yd~~~~~W~~~~~~~~ 370 (482)
||.+|++++++++|||+||+ +.....+++++||+++++|+.+ ++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~-~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTEL-SPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeec-CCCC
Confidence 68899999999999999999 3445678999999999999999 6654
No 48
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.98 E-value=1.4e-09 Score=70.87 Aligned_cols=47 Identities=34% Similarity=0.594 Sum_probs=43.0
Q ss_pred CCEEEEEeccC--CCcccCeEEEEeCCCCceeecCCCCCCccceEEEEE
Q psy11333 382 DGFLYAVGGQD--GVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVL 428 (482)
Q Consensus 382 ~~~lyv~GG~~--~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 428 (482)
+++|||+||.+ +....+++++||+.+++|+.++++|.||.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 58999999987 567789999999999999999999999999999864
No 49
>smart00612 Kelch Kelch domain.
Probab=98.93 E-value=2e-09 Score=69.85 Aligned_cols=47 Identities=51% Similarity=0.835 Sum_probs=42.5
Q ss_pred EEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECC
Q psy11333 384 FLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGG 430 (482)
Q Consensus 384 ~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 430 (482)
+||++||.++....+++++||+.+++|+.+++||.+|..+++++++|
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 58999998765667899999999999999999999999999998875
No 50
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.89 E-value=1.5e-09 Score=70.95 Aligned_cols=47 Identities=34% Similarity=0.641 Sum_probs=31.3
Q ss_pred CccceEEEEE-CCEEEEEcCCCCC-CCCCeEEEEeCCCCceeecCCCCc
Q psy11333 419 RRLGVAVAVL-GGFLYAIGGSDGQ-SPLNTVERFDPKLNRWTAMAPMST 465 (482)
Q Consensus 419 ~r~~~~~~~~-~~~i~v~GG~~~~-~~~~~~~~y~~~~~~W~~~~~~~~ 465 (482)
||.+|+++.+ +++||++||.+.. ..++++++||+++++|+.++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 6999999998 5899999998775 578999999999999999988873
No 51
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.82 E-value=3.9e-09 Score=68.90 Aligned_cols=46 Identities=28% Similarity=0.515 Sum_probs=31.0
Q ss_pred CCCceeEEEE-CCEEEEEecCCCC-CCCCeEEEEeCCCCceeecCCCCC
Q psy11333 324 RRCGVGVAVL-NDLLYAVGGHDGQ-SYLNSIERYDPQTNQWSCDVAPTT 370 (482)
Q Consensus 324 ~~~~~~~~~~-~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~~~ 370 (482)
||.+|+++.+ ++.||++||.+.. ...+++++||+.+++|+++ +++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~-~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL-PSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE---SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC-CCCC
Confidence 6899999998 6899999999875 5789999999999999999 7776
No 52
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.63 E-value=5e-07 Score=79.61 Aligned_cols=154 Identities=19% Similarity=0.281 Sum_probs=101.1
Q ss_pred eeEEEeCCCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCC----CceeecCCCCCCcccceeEE
Q psy11333 304 SVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQT----NQWSCDVAPTTSCRTSVGVA 379 (482)
Q Consensus 304 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~----~~W~~~~~~~~~~r~~~~~~ 379 (482)
.-..||+.+++++.+....-.=+..++..-+|.+.+.||... ..+.+..|+|.+ ..|.+....|..+|-++++.
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 456799999999876532211111222224899999999754 335677888865 57988745689999888777
Q ss_pred EE-CCEEEEEeccCCCcccCeEEEEeCCC-----CceeecCC----CCCCccceEEEEECCEEEEEcCCCCCCCCCeEEE
Q psy11333 380 VL-DGFLYAVGGQDGVQCLNHVERYDPKE-----NKWSRVAP----MTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVER 449 (482)
Q Consensus 380 ~~-~~~lyv~GG~~~~~~~~~~~~yd~~~-----~~W~~~~~----~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~ 449 (482)
.+ +|+++|+||... .+.+.|.+.. ..|..+.. .+...+-+....-+|+||++++. ...+
T Consensus 125 ~L~DG~vlIvGG~~~----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-------~s~i 193 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNN----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-------GSII 193 (243)
T ss_pred ECCCCCEEEEeCcCC----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-------CcEE
Confidence 65 899999999763 2233333321 12322322 23344445555569999999985 3588
Q ss_pred EeCCCCce-eecCCCCc-CCCce
Q psy11333 450 FDPKLNRW-TAMAPMST-RRKHL 470 (482)
Q Consensus 450 y~~~~~~W-~~~~~~~~-~r~~~ 470 (482)
||++++++ ..++.+|. +|.++
T Consensus 194 ~d~~~n~v~~~lP~lPg~~R~YP 216 (243)
T PF07250_consen 194 YDYKTNTVVRTLPDLPGGPRNYP 216 (243)
T ss_pred EeCCCCeEEeeCCCCCCCceecC
Confidence 89999987 77898886 55543
No 53
>PLN02772 guanylate kinase
Probab=98.63 E-value=2.6e-07 Score=86.50 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=69.1
Q ss_pred CCcccceeEEEECCEEEEEeccCCCc-ccCeEEEEeCCCCceeecC---CCCCCccceEEEEE-CCEEEEEcCCCCCCCC
Q psy11333 370 TSCRTSVGVAVLDGFLYAVGGQDGVQ-CLNHVERYDPKENKWSRVA---PMTTRRLGVAVAVL-GGFLYAIGGSDGQSPL 444 (482)
Q Consensus 370 ~~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~-~~~i~v~GG~~~~~~~ 444 (482)
..++..++++.+++++||+||.+... ..+.+++||+.|.+|.... ..|.||.+|+++++ +++|+|+++-.+.+
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~-- 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD-- 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--
Confidence 35788899999999999999976543 6789999999999998765 78999999999999 67999999865543
Q ss_pred CeEEEEeCCC
Q psy11333 445 NTVERFDPKL 454 (482)
Q Consensus 445 ~~~~~y~~~~ 454 (482)
.++|.+...+
T Consensus 100 ~~~w~l~~~t 109 (398)
T PLN02772 100 DSIWFLEVDT 109 (398)
T ss_pred cceEEEEcCC
Confidence 6788777654
No 54
>PLN02772 guanylate kinase
Probab=98.50 E-value=9.8e-07 Score=82.69 Aligned_cols=83 Identities=13% Similarity=0.180 Sum_probs=66.4
Q ss_pred CCCCCceeEEEECCEEEEEecCCCCC-CCCeEEEEeCCCCceeec--CCCCCCcccceeEEEE-CCEEEEEeccCCCccc
Q psy11333 322 SKRRCGVGVAVLNDLLYAVGGHDGQS-YLNSIERYDPQTNQWSCD--VAPTTSCRTSVGVAVL-DGFLYAVGGQDGVQCL 397 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~--~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~ 397 (482)
..++..++++++++++||+||.+... ..+.+++||+.+++|... ....|.||.+|+++++ +++|+|+++.... -
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--~ 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--D 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC--c
Confidence 35788899999999999999977654 568999999999999965 2567899999999988 6899999875432 2
Q ss_pred CeEEEEeCC
Q psy11333 398 NHVERYDPK 406 (482)
Q Consensus 398 ~~~~~yd~~ 406 (482)
.++|.+...
T Consensus 100 ~~~w~l~~~ 108 (398)
T PLN02772 100 DSIWFLEVD 108 (398)
T ss_pred cceEEEEcC
Confidence 566666554
No 55
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.48 E-value=2.7e-05 Score=69.90 Aligned_cols=165 Identities=9% Similarity=0.134 Sum_probs=100.2
Q ss_pred CCcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCce----eEEEECC-----EEEEEecCCCCCCCCeEEEEe
Q psy11333 286 RGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGV----GVAVLND-----LLYAVGGHDGQSYLNSIERYD 356 (482)
Q Consensus 286 ~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~----~~~~~~~-----~iyv~GG~~~~~~~~~~~~yd 356 (482)
.+|.|.+..+ ..+..+||.|++|..+|+.+.++... ....++. +|..+...........+++|+
T Consensus 4 CnGLlc~~~~-------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys 76 (230)
T TIGR01640 4 CDGLICFSYG-------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYT 76 (230)
T ss_pred cceEEEEecC-------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEE
Confidence 4566655432 46899999999999998655431111 1112222 455554321112335789999
Q ss_pred CCCCceeecCCCCCCc-ccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceee-cCCCCCCc----cceEEEEECC
Q psy11333 357 PQTNQWSCDVAPTTSC-RTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSR-VAPMTTRR----LGVAVAVLGG 430 (482)
Q Consensus 357 ~~~~~W~~~~~~~~~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r----~~~~~~~~~~ 430 (482)
..+++|+.+ .+.+.. ......+..+|.+|-+...........+..||..+.+|.. ++ +|..+ .....+.++|
T Consensus 77 ~~~~~Wr~~-~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G 154 (230)
T TIGR01640 77 LGSNSWRTI-ECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKG 154 (230)
T ss_pred eCCCCcccc-ccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee-cCccccccccceEEEEECC
Confidence 999999998 322211 1122256789999988753321111269999999999995 54 34333 2456777899
Q ss_pred EEEEEcCCCCCCCCCeEEEEe-CCCCceeec
Q psy11333 431 FLYAIGGSDGQSPLNTVERFD-PKLNRWTAM 460 (482)
Q Consensus 431 ~i~v~GG~~~~~~~~~~~~y~-~~~~~W~~~ 460 (482)
+|.++...... ..-++|+.+ -...+|+..
T Consensus 155 ~L~~v~~~~~~-~~~~IWvl~d~~~~~W~k~ 184 (230)
T TIGR01640 155 KLAVLKQKKDT-NNFDLWVLNDAGKQEWSKL 184 (230)
T ss_pred EEEEEEecCCC-CcEEEEEECCCCCCceeEE
Confidence 99888764321 124677775 335679875
No 56
>PF13854 Kelch_5: Kelch motif
Probab=98.46 E-value=4.5e-07 Score=56.55 Aligned_cols=39 Identities=28% Similarity=0.449 Sum_probs=34.8
Q ss_pred CCCCccceEEEEECCEEEEEcCCCC--CCCCCeEEEEeCCC
Q psy11333 416 MTTRRLGVAVAVLGGFLYAIGGSDG--QSPLNTVERFDPKL 454 (482)
Q Consensus 416 ~~~~r~~~~~~~~~~~i~v~GG~~~--~~~~~~~~~y~~~~ 454 (482)
+|.+|.+|++++.+++||++||.++ ....+++|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 5889999999999999999999984 55789999999875
No 57
>PF13854 Kelch_5: Kelch motif
Probab=98.46 E-value=4.4e-07 Score=56.59 Aligned_cols=39 Identities=28% Similarity=0.505 Sum_probs=34.5
Q ss_pred CCCCCCceeEEEECCEEEEEecCCC--CCCCCeEEEEeCCC
Q psy11333 321 MSKRRCGVGVAVLNDLLYAVGGHDG--QSYLNSIERYDPQT 359 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~yd~~~ 359 (482)
+|.+|.+|++++++++||++||.+. ....+++++||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4789999999999999999999983 55678999999876
No 58
>KOG0783|consensus
Probab=98.45 E-value=7.4e-07 Score=88.17 Aligned_cols=107 Identities=19% Similarity=0.324 Sum_probs=78.6
Q ss_pred HHHHHHHHHhc----CCceeEEEEeCCeEEeceeEEeeccCHHHHHHhcCCCCcCccce------------EEEccCCHH
Q psy11333 24 VLSEVSALRRH----RELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAE------------VTIRDIDDV 87 (482)
Q Consensus 24 ~~~~~~~~~~~----~~~~Dv~i~~~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~~------------i~l~~~~~~ 87 (482)
+...+.+|+.. ..+.||+|.|++..|++||.||++||+||++++-.....+..+. |.++++.+.
T Consensus 541 fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~ 620 (1267)
T KOG0783|consen 541 FEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPL 620 (1267)
T ss_pred chhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHH
Confidence 45566666543 46789999999999999999999999999999965443333222 446789999
Q ss_pred HHHHHHHHhhcCee--ee--c----------c-------ccHhhHHHHhcccChhhHHHHHHHH
Q psy11333 88 AMDNLIEFCYTSHI--TV--E----------E-------SNVQTLLPAACLLQLVEIQDICCEF 130 (482)
Q Consensus 88 ~~~~~l~~~y~~~~--~~--~----------~-------~~~~~ll~~a~~~~~~~L~~~~~~~ 130 (482)
.|+.+|+|+|+... +. + . ..|.-+..++++|++.+|......+
T Consensus 621 mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~s~ 684 (1267)
T KOG0783|consen 621 MFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSVSR 684 (1267)
T ss_pred HHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhhhc
Confidence 99999999999621 11 1 1 2255588888888888887665443
No 59
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.23 E-value=4.8e-05 Score=67.23 Aligned_cols=128 Identities=16% Similarity=0.184 Sum_probs=86.9
Q ss_pred CCCCCCCCCCcEEEEeccccCCCCCceeEEEeCCC----CCeeecc-CCCCCCCceeEEEE-CCEEEEEecCCCCCCCCe
Q psy11333 278 TRPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQS----SDWKIVA-PMSKRRCGVGVAVL-NDLLYAVGGHDGQSYLNS 351 (482)
Q Consensus 278 ~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~d~~~----~~W~~~~-~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~ 351 (482)
++...+...++.+.+.||..+ -.+.+..|+|.+ ..|.+.+ .|..+|.+.++..+ ||+++|+||... .+
T Consensus 68 FCSgg~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~----~t 141 (243)
T PF07250_consen 68 FCSGGAFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNN----PT 141 (243)
T ss_pred cccCcCCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCC----Cc
Confidence 444445556899999999864 334577788876 6798775 58999999999987 899999999763 23
Q ss_pred EEEEeCCCC-----ceeecC---CCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCce-eecCCCCC
Q psy11333 352 IERYDPQTN-----QWSCDV---APTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKW-SRVAPMTT 418 (482)
Q Consensus 352 ~~~yd~~~~-----~W~~~~---~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~ 418 (482)
.|.|.+... .|..+. ...+...+-+....-+|+|++++.. ....||+.++++ ..+|++|.
T Consensus 142 ~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-------~s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 142 YEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-------GSIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred ccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-------CcEEEeCCCCeEEeeCCCCCC
Confidence 344443221 222220 1122333444555668999999863 567899999987 78888874
No 60
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.19 E-value=5.2e-05 Score=68.04 Aligned_cols=139 Identities=17% Similarity=0.230 Sum_probs=84.6
Q ss_pred ECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCccc---c--eeEEEEC-----CEEEEEeccCCCcccCeEEE
Q psy11333 333 LNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRT---S--VGVAVLD-----GFLYAVGGQDGVQCLNHVER 402 (482)
Q Consensus 333 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~---~--~~~~~~~-----~~lyv~GG~~~~~~~~~~~~ 402 (482)
++|-|.+..+ ..+.++||.|++|..+ |+.+.++. . .+.+ ++ -|+..+....+......+++
T Consensus 4 CnGLlc~~~~-------~~~~V~NP~T~~~~~L-P~~~~~~~~~~~~~~~~G-~d~~~~~YKVv~~~~~~~~~~~~~~~V 74 (230)
T TIGR01640 4 CDGLICFSYG-------KRLVVWNPSTGQSRWL-PTPKSRRSNKESDTYFLG-YDPIEKQYKVLCFSDRSGNRNQSEHQV 74 (230)
T ss_pred cceEEEEecC-------CcEEEECCCCCCEEec-CCCCCcccccccceEEEe-ecccCCcEEEEEEEeecCCCCCccEEE
Confidence 4666655432 4689999999999999 54433211 1 1111 22 24555543211123357899
Q ss_pred EeCCCCceeecCCCCCC-ccceEEEEECCEEEEEcCCCCCCCCCeEEEEeCCCCceeecCCCCcCCC----ceeEEEEcC
Q psy11333 403 YDPKENKWSRVAPMTTR-RLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRK----HLGCAVFVG 477 (482)
Q Consensus 403 yd~~~~~W~~~~~~~~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~~~~~~~r~----~~~~~~~~~ 477 (482)
|+..++.|..+...+.. ......+.++|.||-+...........|..||..+++|...-++|..+. ....++++|
T Consensus 75 ys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G 154 (230)
T TIGR01640 75 YTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKG 154 (230)
T ss_pred EEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECC
Confidence 99999999998743321 1122267789999998754321212369999999999995223444332 345777777
Q ss_pred CCC
Q psy11333 478 DNG 480 (482)
Q Consensus 478 ~~~ 480 (482)
+++
T Consensus 155 ~L~ 157 (230)
T TIGR01640 155 KLA 157 (230)
T ss_pred EEE
Confidence 765
No 61
>KOG0511|consensus
Probab=98.13 E-value=1.7e-06 Score=78.09 Aligned_cols=131 Identities=18% Similarity=0.215 Sum_probs=107.6
Q ss_pred eEEeceeEEeeccCHHHHHHhcCCCCcCccce----EEEccCCHHHHHHHHHHhhcCeeeeccccHhhHHHHhcccChhh
Q psy11333 47 RKIFAHRVVLSACSPYFRAMFTGELAESRQAE----VTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVE 122 (482)
Q Consensus 47 ~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~~----i~l~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ll~~a~~~~~~~ 122 (482)
.+++||..+++ |.+||+.||.|++.|+..+. ..++......++.+++++|..+..+..+-+.+++-+|+++.+.+
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~ 379 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD 379 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
Confidence 56999999997 78899999999999965322 44566777889999999999998888888999999999987652
Q ss_pred ---HHHHHHHHHhccC---CCCCHHHHHHHHhhCCCHHHHHHHHHHHHHhHHHHhccccccc
Q psy11333 123 ---IQDICCEFLKRQL---DPSNCLGIRAFADTHSCRDLLRIADKFTQHNFQEVMESEEFLI 178 (482)
Q Consensus 123 ---L~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~L~~~~~~~i~~~~~~l~~~~~f~~ 178 (482)
|+.++.-.|++.. ++-+++.++..+...+...|.+.+..++..|+..++..|++..
T Consensus 380 dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~ 441 (516)
T KOG0511|consen 380 DRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDS 441 (516)
T ss_pred hhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhH
Confidence 5565555565543 3346889999999999999999999999999999999988853
No 62
>KOG2838|consensus
Probab=97.82 E-value=1.8e-05 Score=68.32 Aligned_cols=105 Identities=14% Similarity=0.137 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhcCCceeEEEEeCCeEEeceeEEeeccCHHHHHHhcCCCCcCccce--EEEccCCHHHHHHHHHHhhcC
Q psy11333 22 RVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAE--VTIRDIDDVAMDNLIEFCYTS 99 (482)
Q Consensus 22 ~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~~--i~l~~~~~~~~~~~l~~~y~~ 99 (482)
+.++.+|.+.++-..-.|+-|+.....|++||.+|++|+++|+.+.++.-.-..... |.+.+++..+|+.++++.|++
T Consensus 115 ~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tg 194 (401)
T KOG2838|consen 115 NSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITG 194 (401)
T ss_pred hHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhc
Confidence 557788888877777789999999999999999999999999998876533222222 556788999999999999998
Q ss_pred ee---eeccccHhhHHHHhcccChhhHHHH
Q psy11333 100 HI---TVEESNVQTLLPAACLLQLVEIQDI 126 (482)
Q Consensus 100 ~~---~~~~~~~~~ll~~a~~~~~~~L~~~ 126 (482)
+. .+...|..-+-.++.-|+++.-.+.
T Consensus 195 EfgmEd~~fqn~diL~QL~edFG~~kkLd~ 224 (401)
T KOG2838|consen 195 EFGMEDLGFQNSDILEQLCEDFGCFKKLDE 224 (401)
T ss_pred ccchhhcCCchHHHHHHHHHhhCCchhhhH
Confidence 75 4455677778888888887654443
No 63
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.79 E-value=0.0036 Score=55.18 Aligned_cols=153 Identities=12% Similarity=0.101 Sum_probs=89.4
Q ss_pred cEEEEe-ccccC-CCCCceeEEEeCCCCC---e--------eeccCCCCCCCceeEEEE----CCEEEEEecCCC---C-
Q psy11333 288 EVLFAV-GGWCS-GDAISSVERYDPQSSD---W--------KIVAPMSKRRCGVGVAVL----NDLLYAVGGHDG---Q- 346 (482)
Q Consensus 288 ~~l~~~-GG~~~-~~~~~~~~~~d~~~~~---W--------~~~~~~~~~~~~~~~~~~----~~~iyv~GG~~~---~- 346 (482)
...|++ ||... +...+.++........ - ..++..|.+|++|++.++ +....++||..- .
T Consensus 38 ~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~q 117 (337)
T PF03089_consen 38 PEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQ 117 (337)
T ss_pred eeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccc
Confidence 355555 66663 4455566665443322 1 224689999999998876 335788899531 0
Q ss_pred ----------CCCCeEEEEeCCCCceeec-CCCCCCcccceeEEEECCEEEEEeccC--CCcccCeEEEEeCC---CCce
Q psy11333 347 ----------SYLNSIERYDPQTNQWSCD-VAPTTSCRTSVGVAVLDGFLYAVGGQD--GVQCLNHVERYDPK---ENKW 410 (482)
Q Consensus 347 ----------~~~~~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~yd~~---~~~W 410 (482)
...-.|+..|++-+-++.- -+.+..+-..|.+.+-++++|++||+. .+.....+++.... ..-+
T Consensus 118 RTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~ 197 (337)
T PF03089_consen 118 RTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPA 197 (337)
T ss_pred cchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCce
Confidence 0123577788887776632 155666667777778899999999964 22333444444221 1112
Q ss_pred eecCCCCCCccceEEEEE---CCEEEEEcCCCC
Q psy11333 411 SRVAPMTTRRLGVAVAVL---GGFLYAIGGSDG 440 (482)
Q Consensus 411 ~~~~~~~~~r~~~~~~~~---~~~i~v~GG~~~ 440 (482)
....-++.+.+..++++. .+...|+||+..
T Consensus 198 vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~s 230 (337)
T PF03089_consen 198 VSCTVLQGGLSISSAIVTQTGPHEYIILGGYQS 230 (337)
T ss_pred eEEEECCCCceEeeeeEeecCCCceEEEecccc
Confidence 222223444444444433 557888899854
No 64
>KOG2716|consensus
Probab=97.66 E-value=0.00013 Score=63.15 Aligned_cols=95 Identities=19% Similarity=0.371 Sum_probs=78.9
Q ss_pred EEEEeCCeEEeceeEEeeccCHHHHHHhcCCCCcCc-cceEEEccCCHHHHHHHHHHhhcCeeee--ccccHhhHHHHhc
Q psy11333 40 VVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESR-QAEVTIRDIDDVAMDNLIEFCYTSHITV--EESNVQTLLPAAC 116 (482)
Q Consensus 40 v~i~~~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~-~~~i~l~~~~~~~~~~~l~~~y~~~~~~--~~~~~~~ll~~a~ 116 (482)
|.+.|||..|.-.+.-|.....+|++|+.+++.... ..--.+.|=++..|+.+|.||..|...+ +..++.++++=|+
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~ 86 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKELLREAE 86 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHHHHHHHH
Confidence 568899999999999999999999999999874332 2223344679999999999999987655 4557889999999
Q ss_pred ccChhhHHHHHHHHHhcc
Q psy11333 117 LLQLVEIQDICCEFLKRQ 134 (482)
Q Consensus 117 ~~~~~~L~~~~~~~i~~~ 134 (482)
+|.++.|++.|...+...
T Consensus 87 fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 87 FYLLDGLVELCQSAIARL 104 (230)
T ss_pred HhhHHHHHHHHHHHhhhc
Confidence 999999999999987654
No 65
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.51 E-value=0.0047 Score=58.64 Aligned_cols=118 Identities=18% Similarity=0.210 Sum_probs=80.2
Q ss_pred ECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEECCEEEEEeccCCCccc-----CeEEEE--eC
Q psy11333 333 LNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCL-----NHVERY--DP 405 (482)
Q Consensus 333 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~-----~~~~~y--d~ 405 (482)
.+++|+.+++. ....+||+.+..-... |.+..+.....++..+++||++......... ...+++ ++
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~-P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~ 147 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATG-PRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRP 147 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEecc-CCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccc
Confidence 48899988654 2378999999987766 7777777777777789999999875322111 144444 42
Q ss_pred C--------CCceeecCCCCCCccc-------eEEEEE-CCEEEE-EcCCCCCCCCCeEEEEeCCCCceeecCC
Q psy11333 406 K--------ENKWSRVAPMTTRRLG-------VAVAVL-GGFLYA-IGGSDGQSPLNTVERFDPKLNRWTAMAP 462 (482)
Q Consensus 406 ~--------~~~W~~~~~~~~~r~~-------~~~~~~-~~~i~v-~GG~~~~~~~~~~~~y~~~~~~W~~~~~ 462 (482)
. .=.|..+|++|..+.. .+-+++ +..||| .-|.. .-.+.||+.+.+|+.+++
T Consensus 148 ~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 148 PPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred ccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccc
Confidence 1 2268888877755543 344555 557888 44321 248999999999999974
No 66
>KOG2838|consensus
Probab=97.46 E-value=3.3e-05 Score=66.79 Aligned_cols=114 Identities=15% Similarity=0.266 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCCceeEEEE-e-CC--------------eEEeceeEEeeccCHHHHHHhcCCCCcCcc---------c
Q psy11333 23 VVLSEVSALRRHRELCDVVLN-V-GA--------------RKIFAHRVVLSACSPYFRAMFTGELAESRQ---------A 77 (482)
Q Consensus 23 ~~~~~~~~~~~~~~~~Dv~i~-~-~~--------------~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~---------~ 77 (482)
.|-.++..|++..-+-|+.|+ + +| .+++|||.|.++||+||+.++.-++.+..+ .
T Consensus 221 kLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~Pk 300 (401)
T KOG2838|consen 221 KLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPK 300 (401)
T ss_pred hhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCc
Confidence 334455667776655555443 2 22 369999999999999999999655444332 2
Q ss_pred eEEEc-cCCHHHHH-HHHHHhhcCeeeeccc----------------------------cHhhHHHHhcccChhhHHHHH
Q psy11333 78 EVTIR-DIDDVAMD-NLIEFCYTSHITVEES----------------------------NVQTLLPAACLLQLVEIQDIC 127 (482)
Q Consensus 78 ~i~l~-~~~~~~~~-~~l~~~y~~~~~~~~~----------------------------~~~~ll~~a~~~~~~~L~~~~ 127 (482)
.|.+. -+-|.+|. .+++++|+..+.++.- .+++++++|-+|...-|..+|
T Consensus 301 RIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~ 380 (401)
T KOG2838|consen 301 RIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQAC 380 (401)
T ss_pred eeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35553 34555554 5679999976543221 134555666666666666666
Q ss_pred HHHHhccCC
Q psy11333 128 CEFLKRQLD 136 (482)
Q Consensus 128 ~~~i~~~~~ 136 (482)
++.|..+..
T Consensus 381 e~Vir~aca 389 (401)
T KOG2838|consen 381 EDVIRKACA 389 (401)
T ss_pred HHHHHhhhh
Confidence 666555443
No 67
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.25 E-value=0.014 Score=55.46 Aligned_cols=122 Identities=16% Similarity=0.247 Sum_probs=80.3
Q ss_pred CCcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCC-----eEEE--EeC-
Q psy11333 286 RGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLN-----SIER--YDP- 357 (482)
Q Consensus 286 ~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-----~~~~--yd~- 357 (482)
.+++|+.+++. ..+..||+.+..-...|.++.+.....++.++++||++.......... ..|. |++
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~ 148 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPP 148 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccc
Confidence 47788887653 347899999999988888888777777777899999998753221111 4444 442
Q ss_pred -----CCC--ceeecCCCCCCcccc-------eeEEEE-CCEEEEE-eccCCCcccCeEEEEeCCCCceeecCCCCCC
Q psy11333 358 -----QTN--QWSCDVAPTTSCRTS-------VGVAVL-DGFLYAV-GGQDGVQCLNHVERYDPKENKWSRVAPMTTR 419 (482)
Q Consensus 358 -----~~~--~W~~~~~~~~~~r~~-------~~~~~~-~~~lyv~-GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 419 (482)
... .|+.+ +++|..+.. .+-++. +..|+|. -|.. ...++||..+.+|+.+.+..-|
T Consensus 149 ~~~~~~~~~w~W~~L-P~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 149 PDDPSPEESWSWRSL-PPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGDWMLP 220 (342)
T ss_pred cccccCCCcceEEcC-CCCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccceecC
Confidence 222 47777 555544332 233445 6778884 3221 2489999999999999864333
No 68
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=97.05 E-value=0.013 Score=53.45 Aligned_cols=108 Identities=17% Similarity=0.247 Sum_probs=66.3
Q ss_pred CCeEEEEeCCCCceeecCCCCCCcccceeEEE-ECCEEEEEeccCCCc-ccCeEEEEeCCCCceeecCC-C----CCCcc
Q psy11333 349 LNSIERYDPQTNQWSCDVAPTTSCRTSVGVAV-LDGFLYAVGGQDGVQ-CLNHVERYDPKENKWSRVAP-M----TTRRL 421 (482)
Q Consensus 349 ~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~-~----~~~r~ 421 (482)
-..+-.||+.+.+|...... ..+. -.++.. -+++||+.|-.+-.. ....+-.||.++.+|+.++. . |.|..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~-i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG-ISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCC-ceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 45678899999999988332 2221 123332 378888888654332 45678899999999998876 2 33332
Q ss_pred ceEEEEECC-EEEEEcCCCCCCCCCeEEEEeCCCCceeecCC
Q psy11333 422 GVAVAVLGG-FLYAIGGSDGQSPLNTVERFDPKLNRWTAMAP 462 (482)
Q Consensus 422 ~~~~~~~~~-~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~~~ 462 (482)
.......+. .+++.|... ....-+..|| ..+|..+..
T Consensus 93 a~~~~~~d~~~~~~aG~~~--~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSA--NGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEEeeccCCceEEEeceec--CCCceEEEEc--CCceEeccc
Confidence 222222233 577776642 2234467774 558988865
No 69
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.99 E-value=0.00056 Score=51.49 Aligned_cols=87 Identities=25% Similarity=0.366 Sum_probs=63.9
Q ss_pred EEEEeCCeEEeceeEEee-ccCHHHHHHhcCC---CCcCccceEEEccCCHHHHHHHHHHhhc-Ceeeec-cccHhhHHH
Q psy11333 40 VVLNVGARKIFAHRVVLS-ACSPYFRAMFTGE---LAESRQAEVTIRDIDDVAMDNLIEFCYT-SHITVE-ESNVQTLLP 113 (482)
Q Consensus 40 v~i~~~~~~~~~hk~iL~-~~S~~F~~~~~~~---~~e~~~~~i~l~~~~~~~~~~~l~~~y~-~~~~~~-~~~~~~ll~ 113 (482)
|.|.|+|..|.+-+..|. ....+|..|+.++ ........+-| |-++..|+.+++|+.+ +.+..+ ......+++
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence 678999999999999997 4567999999875 23333444544 6799999999999999 566553 456778999
Q ss_pred HhcccChhhH-HHHH
Q psy11333 114 AACLLQLVEI-QDIC 127 (482)
Q Consensus 114 ~a~~~~~~~L-~~~~ 127 (482)
-|++|+++++ ++.|
T Consensus 80 Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 80 EAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHT-HHHHBHHC
T ss_pred HHHHcCCCccccCCC
Confidence 9999999998 6554
No 70
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=96.99 E-value=0.0011 Score=50.85 Aligned_cols=82 Identities=20% Similarity=0.383 Sum_probs=59.8
Q ss_pred HhhHHHHhcccChhhHHHHHHHHHhccCCC---CC---------HHHHHHHHhh--CCCHHHHHHHHHHHHHh-------
Q psy11333 108 VQTLLPAACLLQLVEIQDICCEFLKRQLDP---SN---------CLGIRAFADT--HSCRDLLRIADKFTQHN------- 166 (482)
Q Consensus 108 ~~~ll~~a~~~~~~~L~~~~~~~i~~~~~~---~~---------~~~~~~~~~~--~~~~~L~~~~~~~i~~~------- 166 (482)
|.+++.+|..+++++|.+.|.+++..++.. .+ ...++..... .+...+++++.+|+..+
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~~r~~~ 80 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPENREEH 80 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHHHHTTT
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHHHHHHH
Confidence 788999999999999999999999988743 11 1112221111 23457899999999644
Q ss_pred HHHHhcccccccCCHHHHhHhhc
Q psy11333 167 FQEVMESEEFLILPVAQLVDIIS 189 (482)
Q Consensus 167 ~~~l~~~~~f~~l~~~~l~~il~ 189 (482)
+.++++..+|..++.+.|.+.|+
T Consensus 81 ~~~Ll~~iR~~~l~~~~L~~~v~ 103 (103)
T PF07707_consen 81 LKELLSCIRFPLLSPEELQNVVE 103 (103)
T ss_dssp HHHHHCCCHHHCT-HHHHHHCCT
T ss_pred HHHHHHhCCcccCCHHHHHHHHC
Confidence 67889999999999999988763
No 71
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.86 E-value=0.017 Score=52.65 Aligned_cols=120 Identities=16% Similarity=0.258 Sum_probs=74.1
Q ss_pred EEeccccCCC--CCceeEEEeCCCCCeeeccCCCCCCCceeEEEE-CCEEEEEecCCCCC-CCCeEEEEeCCCCceeecC
Q psy11333 291 FAVGGWCSGD--AISSVERYDPQSSDWKIVAPMSKRRCGVGVAVL-NDLLYAVGGHDGQS-YLNSIERYDPQTNQWSCDV 366 (482)
Q Consensus 291 ~~~GG~~~~~--~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~ 366 (482)
||-|-+...+ ....+..||+.+.+|.....-..+. -.++... ++.||+.|-..-.+ ....+-.||..+++|+.+.
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~ 80 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLG 80 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecC
Confidence 4445454333 5678999999999998866542222 1223333 77888877654333 3456889999999999883
Q ss_pred CC----CCCcccceeEEEE-CCEEEEEeccCCCcccCeEEEEeCCCCceeecCC
Q psy11333 367 AP----TTSCRTSVGVAVL-DGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAP 415 (482)
Q Consensus 367 ~~----~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 415 (482)
.. +|-+......... ...+++.|.... ...-+..|| ..+|..+..
T Consensus 81 ~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~--g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 81 GGSSNSIPGPVTALTFISNDGSNFWVAGRSAN--GSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred CcccccCCCcEEEEEeeccCCceEEEeceecC--CCceEEEEc--CCceEeccc
Confidence 31 3444332222222 356888877522 134577785 569999875
No 72
>KOG3473|consensus
Probab=96.66 E-value=0.0063 Score=43.91 Aligned_cols=80 Identities=28% Similarity=0.354 Sum_probs=61.0
Q ss_pred EEEEeC-CeEEeceeEEeeccCHHHHHHhcCCC--CcCccceEEEccCCHHHHHHHHHHh-h----cCe------eeecc
Q psy11333 40 VVLNVG-ARKIFAHRVVLSACSPYFRAMFTGEL--AESRQAEVTIRDIDDVAMDNLIEFC-Y----TSH------ITVEE 105 (482)
Q Consensus 40 v~i~~~-~~~~~~hk~iL~~~S~~F~~~~~~~~--~e~~~~~i~l~~~~~~~~~~~l~~~-y----~~~------~~~~~ 105 (482)
|.++.+ +.+|-+.|-+ +.-|.-.|+|++|.. .+...|++.+.++....++++.+|+ | ++. +++++
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp 97 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP 97 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCH
Confidence 555554 6667776655 447999999999764 5555678999999999999999988 3 222 25678
Q ss_pred ccHhhHHHHhcccCh
Q psy11333 106 SNVQTLLPAACLLQL 120 (482)
Q Consensus 106 ~~~~~ll~~a~~~~~ 120 (482)
+-.++++.+|+++.+
T Consensus 98 emaleLL~aAn~Lec 112 (112)
T KOG3473|consen 98 EMALELLMAANYLEC 112 (112)
T ss_pred HHHHHHHHHhhhhcC
Confidence 889999999998864
No 73
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.55 E-value=0.4 Score=46.87 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=91.6
Q ss_pred CCCcEEEEeccccCCCCCceeEEEeCCCC--CeeeccCCCCC--------CCceeEEEECCEEEEEecCCCCCCCCeEEE
Q psy11333 285 RRGEVLFAVGGWCSGDAISSVERYDPQSS--DWKIVAPMSKR--------RCGVGVAVLNDLLYAVGGHDGQSYLNSIER 354 (482)
Q Consensus 285 ~~~~~l~~~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~~~~--------~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 354 (482)
..++.+|+..+. ..+..+|+.+. .|+.-...+.. ....+-++.++.+|+.+. + ..+++
T Consensus 203 v~~~~v~~~~~~------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~-----g~l~a 270 (394)
T PRK11138 203 TAFGGAIVGGDN------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-N-----GNLVA 270 (394)
T ss_pred EECCEEEEEcCC------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-C-----CeEEE
Confidence 345666665431 35788888876 47642111111 111233456899998653 2 36899
Q ss_pred EeCCCCc--eeecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCC--ceeecCCCCCCccceEEEEECC
Q psy11333 355 YDPQTNQ--WSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKEN--KWSRVAPMTTRRLGVAVAVLGG 430 (482)
Q Consensus 355 yd~~~~~--W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~~~~~~~~~ 430 (482)
+|+.+.+ |+.- . ..+ ...+..+++||+.... ..++++|+.+. .|+.-. ...+...+.++.++
T Consensus 271 ld~~tG~~~W~~~-~--~~~---~~~~~~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~--~~~~~~~sp~v~~g 336 (394)
T PRK11138 271 LDLRSGQIVWKRE-Y--GSV---NDFAVDGGRIYLVDQN------DRVYALDTRGGVELWSQSD--LLHRLLTAPVLYNG 336 (394)
T ss_pred EECCCCCEEEeec-C--CCc---cCcEEECCEEEEEcCC------CeEEEEECCCCcEEEcccc--cCCCcccCCEEECC
Confidence 9999875 8754 1 111 1346678999987532 36889998865 475421 11233344456789
Q ss_pred EEEEEcCCCCCCCCCeEEEEeCCCCc--eeecCCCCcCCCceeEEEEcCCC
Q psy11333 431 FLYAIGGSDGQSPLNTVERFDPKLNR--WTAMAPMSTRRKHLGCAVFVGDN 479 (482)
Q Consensus 431 ~i~v~GG~~~~~~~~~~~~y~~~~~~--W~~~~~~~~~r~~~~~~~~~~~~ 479 (482)
+||+... + ..++++|+++.+ |+. .++......+.++.++++
T Consensus 337 ~l~v~~~-~-----G~l~~ld~~tG~~~~~~--~~~~~~~~s~P~~~~~~l 379 (394)
T PRK11138 337 YLVVGDS-E-----GYLHWINREDGRFVAQQ--KVDSSGFLSEPVVADDKL 379 (394)
T ss_pred EEEEEeC-C-----CEEEEEECCCCCEEEEE--EcCCCcceeCCEEECCEE
Confidence 9987643 2 368889988764 544 111122333445555544
No 74
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.46 E-value=0.52 Score=46.05 Aligned_cols=146 Identities=15% Similarity=0.248 Sum_probs=86.4
Q ss_pred CCCCcEEEEeccccCCCCCceeEEEeCCCCC--eeeccCCCC--CCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCC
Q psy11333 284 SRRGEVLFAVGGWCSGDAISSVERYDPQSSD--WKIVAPMSK--RRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQT 359 (482)
Q Consensus 284 ~~~~~~l~~~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~--~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 359 (482)
+..++.+|+..+. ..++.+|+.+.+ |+.-...+. .+...+-++.++.+|+.++ + ..+..+|+.+
T Consensus 157 ~v~~~~v~v~~~~------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~-~-----g~v~a~d~~~ 224 (394)
T PRK11138 157 VVSDGLVLVHTSN------GMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD-N-----GRVSAVLMEQ 224 (394)
T ss_pred EEECCEEEEECCC------CEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC-C-----CEEEEEEccC
Confidence 3446777775431 368999998875 865433221 1222233445777777543 2 3578899887
Q ss_pred Cc--eeecCCCCCCc-----c---cceeEEEECCEEEEEeccCCCcccCeEEEEeCCCC--ceeecCCCCCCccceEEEE
Q psy11333 360 NQ--WSCDVAPTTSC-----R---TSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKEN--KWSRVAPMTTRRLGVAVAV 427 (482)
Q Consensus 360 ~~--W~~~~~~~~~~-----r---~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~~~~~~ 427 (482)
.+ |+.- ...+.. | ...+-++.++.+|+.+.. ..+.++|+.+. .|+.-. ..+ ...+.
T Consensus 225 G~~~W~~~-~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~--~~~---~~~~~ 292 (394)
T PRK11138 225 GQLIWQQR-ISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN------GNLVALDLRSGQIVWKREY--GSV---NDFAV 292 (394)
T ss_pred Chhhheec-cccCCCccchhcccccCCCcEEECCEEEEEEcC------CeEEEEECCCCCEEEeecC--CCc---cCcEE
Confidence 75 8743 111111 1 112334678999986531 36889999876 486532 111 13456
Q ss_pred ECCEEEEEcCCCCCCCCCeEEEEeCCCC--ceee
Q psy11333 428 LGGFLYAIGGSDGQSPLNTVERFDPKLN--RWTA 459 (482)
Q Consensus 428 ~~~~i~v~GG~~~~~~~~~~~~y~~~~~--~W~~ 459 (482)
.+++||+.... ..++++|+++. .|+.
T Consensus 293 ~~~~vy~~~~~------g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 293 DGGRIYLVDQN------DRVYALDTRGGVELWSQ 320 (394)
T ss_pred ECCEEEEEcCC------CeEEEEECCCCcEEEcc
Confidence 78999997642 46899998765 4754
No 75
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.42 E-value=0.003 Score=57.37 Aligned_cols=90 Identities=19% Similarity=0.334 Sum_probs=74.5
Q ss_pred eEEeceeEEeeccCHHHHHHhcCCCCcCcc-ceEEE-ccCCHHHHHHHHHHhhcCeeeeccccHhhHHHHhcccChhhHH
Q psy11333 47 RKIFAHRVVLSACSPYFRAMFTGELAESRQ-AEVTI-RDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQ 124 (482)
Q Consensus 47 ~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~-~~i~l-~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ll~~a~~~~~~~L~ 124 (482)
+.|.|.+.+|...=.||+..+.....+++. ..|+| -.-|-..|+=+++|+....-.++++|++.|+--+++|+|++|.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lv 93 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLV 93 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHH
Confidence 569999999999999999999653323332 33666 3457788999999999977789999999999999999999999
Q ss_pred HHHHHHHhccCC
Q psy11333 125 DICCEFLKRQLD 136 (482)
Q Consensus 125 ~~~~~~i~~~~~ 136 (482)
+.|..|+..++.
T Consensus 94 e~cl~y~~~~~~ 105 (317)
T PF11822_consen 94 EECLQYCHDHMS 105 (317)
T ss_pred HHHHHHHHHhHH
Confidence 999999987764
No 76
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=96.33 E-value=0.19 Score=45.25 Aligned_cols=179 Identities=18% Similarity=0.248 Sum_probs=104.1
Q ss_pred CCcEEEEeccccCCCCCceeEEEeC-----CCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCC
Q psy11333 286 RGEVLFAVGGWCSGDAISSVERYDP-----QSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTN 360 (482)
Q Consensus 286 ~~~~l~~~GG~~~~~~~~~~~~~d~-----~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 360 (482)
.++++|++.|..+. .+..|.- ..++....-.+|.+-.+.+.++++|.+|.--. ..+.+.+||..++
T Consensus 29 ~~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~t~ 99 (250)
T PF02191_consen 29 DSEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTR 99 (250)
T ss_pred CCCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec-----CCceEEEEECcCC
Confidence 35789999886533 4444432 33344444457777778888899999987543 2468999999988
Q ss_pred ceeecCCCCCCcc------------cceeEEEECCEEEEEeccCCCcccCeEEEEeCCCC----ceeecCCCCCCccceE
Q psy11333 361 QWSCDVAPTTSCR------------TSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKEN----KWSRVAPMTTRRLGVA 424 (482)
Q Consensus 361 ~W~~~~~~~~~~r------------~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~----~W~~~~~~~~~r~~~~ 424 (482)
+=... ..+|.+. .....++-++-|||+-...++...-.+-+.||.+- +|.. ..+.+..+.
T Consensus 100 ~v~~~-~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~k~~~~n- 175 (250)
T PF02191_consen 100 SVVAR-RELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYPKRSAGN- 175 (250)
T ss_pred cEEEE-EECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccCchhhcc-
Confidence 75411 1222222 22455677788888866443221234556777644 4643 233333333
Q ss_pred EEEECCEEEEEcCCCCCCCCCeEEEEeCCCCceeecC-CCCcCCCceeEEEEcCC
Q psy11333 425 VAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMA-PMSTRRKHLGCAVFVGD 478 (482)
Q Consensus 425 ~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~~-~~~~~r~~~~~~~~~~~ 478 (482)
+.++=|.||++...+... ..-.+.||+.+++=..+. +.+.+-...++..++-+
T Consensus 176 aFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~ 229 (250)
T PF02191_consen 176 AFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPR 229 (250)
T ss_pred eeeEeeEEEEEEECCCCC-cEEEEEEECCCCceeceeeeeccccCceEeeeECCC
Confidence 444458899997765332 344689999877654432 23333344455555443
No 77
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.29 E-value=0.16 Score=45.89 Aligned_cols=170 Identities=19% Similarity=0.226 Sum_probs=91.6
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCC-----CCCCceeEEEECCEEEEEecCCCC-CCC--CeEEEEeCC
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMS-----KRRCGVGVAVLNDLLYAVGGHDGQ-SYL--NSIERYDPQ 358 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~-----~~~~~~~~~~~~~~iyv~GG~~~~-~~~--~~~~~yd~~ 358 (482)
++.+|+... .....+|+.+.+++.+...+ ..+..-.++--+|.||+-.-.... ... ..++++++.
T Consensus 51 ~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~ 123 (246)
T PF08450_consen 51 DGRLYVADS-------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD 123 (246)
T ss_dssp TSEEEEEET-------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT
T ss_pred CCEEEEEEc-------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC
Confidence 577777764 23466699999998776543 112222223347788876432211 111 579999999
Q ss_pred CCceeecCCCCCCcccceeEEE-ECC-EEEEEeccCCCcccCeEEEEeCCCCc--eee---cCCCCCCccce-EEEEE-C
Q psy11333 359 TNQWSCDVAPTTSCRTSVGVAV-LDG-FLYAVGGQDGVQCLNHVERYDPKENK--WSR---VAPMTTRRLGV-AVAVL-G 429 (482)
Q Consensus 359 ~~~W~~~~~~~~~~r~~~~~~~-~~~-~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~---~~~~~~~r~~~-~~~~~-~ 429 (482)
.+.+.+...+..| -+++. -++ .||+.-- ....+++||+.... +.. ..+++...... ++++- +
T Consensus 124 -~~~~~~~~~~~~p---NGi~~s~dg~~lyv~ds-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~ 194 (246)
T PF08450_consen 124 -GKVTVVADGLGFP---NGIAFSPDGKTLYVADS-----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD 194 (246)
T ss_dssp -SEEEEEEEEESSE---EEEEEETTSSEEEEEET-----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT
T ss_pred -CeEEEEecCcccc---cceEECCcchheeeccc-----ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC
Confidence 6655541222111 23333 344 5777643 23568999886443 332 22333332223 33333 7
Q ss_pred CEEEEEcCCCCCCCCCeEEEEeCCCCceeecCCCCcCCCceeEEEEcCCCC
Q psy11333 430 GFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVGDNG 480 (482)
Q Consensus 430 ~~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~~~~~~~r~~~~~~~~~~~~~ 480 (482)
|.||+..-.+ ..|.+|||+...-..+ .+|.+ ..+.++++|...
T Consensus 195 G~l~va~~~~-----~~I~~~~p~G~~~~~i-~~p~~--~~t~~~fgg~~~ 237 (246)
T PF08450_consen 195 GNLWVADWGG-----GRIVVFDPDGKLLREI-ELPVP--RPTNCAFGGPDG 237 (246)
T ss_dssp S-EEEEEETT-----TEEEEEETTSCEEEEE-E-SSS--SEEEEEEESTTS
T ss_pred CCEEEEEcCC-----CEEEEECCCccEEEEE-cCCCC--CEEEEEEECCCC
Confidence 8999983321 5799999995544444 34433 567788876654
No 78
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.23 E-value=0.83 Score=40.82 Aligned_cols=147 Identities=18% Similarity=0.264 Sum_probs=88.4
Q ss_pred CCcEEEEeccccCCCCCceeEEEeCCCCC--eeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCc--
Q psy11333 286 RGEVLFAVGGWCSGDAISSVERYDPQSSD--WKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQ-- 361 (482)
Q Consensus 286 ~~~~l~~~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-- 361 (482)
.++.+|+..+ ...++++|+.+.+ |+.-. +.+- .......++.+|+..+ .+.++++|..+.+
T Consensus 35 ~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~--~~~~-~~~~~~~~~~v~v~~~------~~~l~~~d~~tG~~~ 99 (238)
T PF13360_consen 35 DGGRVYVASG------DGNLYALDAKTGKVLWRFDL--PGPI-SGAPVVDGGRVYVGTS------DGSLYALDAKTGKVL 99 (238)
T ss_dssp ETTEEEEEET------TSEEEEEETTTSEEEEEEEC--SSCG-GSGEEEETTEEEEEET------TSEEEEEETTTSCEE
T ss_pred eCCEEEEEcC------CCEEEEEECCCCCEEEEeec--cccc-cceeeecccccccccc------eeeeEecccCCccee
Confidence 4678887732 2578999997775 65433 2221 1224677999988873 1379999988775
Q ss_pred ee-ecCCCCCC--cccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCC--ceeecCCCCCCcc--------ceEEEEE
Q psy11333 362 WS-CDVAPTTS--CRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKEN--KWSRVAPMTTRRL--------GVAVAVL 428 (482)
Q Consensus 362 W~-~~~~~~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~--------~~~~~~~ 428 (482)
|+ .. ...+. .+......+.++.+|+... ...+.++|+++. .|+.-...+.... ....+..
T Consensus 100 W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (238)
T PF13360_consen 100 WSIYL-TSSPPAGVRSSSSPAVDGDRLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS 172 (238)
T ss_dssp EEEEE--SSCTCSTB--SEEEEETTEEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC
T ss_pred eeecc-ccccccccccccCceEecCEEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE
Confidence 98 45 22222 2334445555777777653 246899998866 4776544433211 2233344
Q ss_pred CCEEEEEcCCCCCCCCCeEEEEeCCCCc--eeec
Q psy11333 429 GGFLYAIGGSDGQSPLNTVERFDPKLNR--WTAM 460 (482)
Q Consensus 429 ~~~i~v~GG~~~~~~~~~~~~y~~~~~~--W~~~ 460 (482)
++.+|+..+.. .+..+|..+++ |+..
T Consensus 173 ~~~v~~~~~~g------~~~~~d~~tg~~~w~~~ 200 (238)
T PF13360_consen 173 DGRVYVSSGDG------RVVAVDLATGEKLWSKP 200 (238)
T ss_dssp TTEEEEECCTS------SEEEEETTTTEEEEEEC
T ss_pred CCEEEEEcCCC------eEEEEECCCCCEEEEec
Confidence 67888887653 25666888876 8543
No 79
>KOG1987|consensus
Probab=96.10 E-value=0.0047 Score=57.78 Aligned_cols=120 Identities=16% Similarity=0.119 Sum_probs=91.9
Q ss_pred CeEEeceeEEeeccCHHHHHHhcCCCCcCccceEEEccCCHHHHHHHHHHhhcCeeeeccccH---hhHHHHhcccChhh
Q psy11333 46 ARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNV---QTLLPAACLLQLVE 122 (482)
Q Consensus 46 ~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~y~~~~~~~~~~~---~~ll~~a~~~~~~~ 122 (482)
+..+.+|+.+++++|+.|+.|+..+..+...+.+.+.+..+..++.+..|.|...-....+.. ..++..+..++.+.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~ 188 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRH 188 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHH
Confidence 556999999999999999999998877776666788888999999999988885322222222 37778999999999
Q ss_pred HHHHHHHHHhccCCCCCHHHHHHHHhhCCCHHHHHHHHHHHHH
Q psy11333 123 IQDICCEFLKRQLDPSNCLGIRAFADTHSCRDLLRIADKFTQH 165 (482)
Q Consensus 123 L~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~i~~ 165 (482)
|+..|...+...+...++...++.+..+....+...+...+..
T Consensus 189 lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 231 (297)
T KOG1987|consen 189 LKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAA 231 (297)
T ss_pred HHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhc
Confidence 9999999999887766666666666666655565666555543
No 80
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.01 E-value=0.0073 Score=46.31 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=45.5
Q ss_pred EEEEe-CCeEEeceeEEeeccCHHHHHHhcCCCCcCc-cceEEEccCCHHHHHHHHHHhhcC
Q psy11333 40 VVLNV-GARKIFAHRVVLSACSPYFRAMFTGELAESR-QAEVTIRDIDDVAMDNLIEFCYTS 99 (482)
Q Consensus 40 v~i~~-~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~-~~~i~l~~~~~~~~~~~l~~~y~~ 99 (482)
++++. +|.+|.+.+.... .|..++.|+.+.-.... ...|.+++++...++.+++||+..
T Consensus 4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h 64 (104)
T smart00512 4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHH 64 (104)
T ss_pred EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHc
Confidence 45554 5888999998774 89999999975432222 247999999999999999999753
No 81
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=96.00 E-value=0.11 Score=46.18 Aligned_cols=103 Identities=15% Similarity=0.138 Sum_probs=66.4
Q ss_pred EEEEecCCCCC-CCCeEEEEeCCCCc--------ee--ecCCCCCCcccceeEEEE--CCE--EEEEeccCC---C----
Q psy11333 337 LYAVGGHDGQS-YLNSIERYDPQTNQ--------WS--CDVAPTTSCRTSVGVAVL--DGF--LYAVGGQDG---V---- 394 (482)
Q Consensus 337 iyv~GG~~~~~-~~~~~~~yd~~~~~--------W~--~~~~~~~~~r~~~~~~~~--~~~--lyv~GG~~~---~---- 394 (482)
-.+.||.+.+. ..+.+|.....+.. .. .+....|.+|++|++-+. .|| ..++||... .
T Consensus 41 YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTT 120 (337)
T PF03089_consen 41 YLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTT 120 (337)
T ss_pred EEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccch
Confidence 34558876543 44556665443322 11 234778999999987654 233 666787421 0
Q ss_pred -------cccCeEEEEeCCCCceee--cCCCCCCccceEEEEECCEEEEEcCCC
Q psy11333 395 -------QCLNHVERYDPKENKWSR--VAPMTTRRLGVAVAVLGGFLYAIGGSD 439 (482)
Q Consensus 395 -------~~~~~~~~yd~~~~~W~~--~~~~~~~r~~~~~~~~~~~i~v~GG~~ 439 (482)
.....|+..|++-..++. ++.+..+.+.|.+..-+|.+|++||..
T Consensus 121 enWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 121 ENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHS 174 (337)
T ss_pred hhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEE
Confidence 123456777777665543 567778888999999999999999974
No 82
>smart00284 OLF Olfactomedin-like domains.
Probab=95.83 E-value=1 Score=40.33 Aligned_cols=181 Identities=14% Similarity=0.125 Sum_probs=97.9
Q ss_pred CcEEEEeccccCCCCCceeEEEe----CCCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCce
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYD----PQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQW 362 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d----~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 362 (482)
++++|+..+.. ...+.++.|. .....+...-.+|.+-.+.+.++++|.+|.--.. .+.+.+||..+.+-
T Consensus 34 ~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~-----s~~iiKydL~t~~v 106 (255)
T smart00284 34 KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFN-----SHDICRFDLTTETY 106 (255)
T ss_pred CceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecC-----CccEEEEECCCCcE
Confidence 47888887642 1223455543 2333444434577777888899999999975432 35799999999985
Q ss_pred eecCCCCCCc------------ccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccc-eEEEEEC
Q psy11333 363 SCDVAPTTSC------------RTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLG-VAVAVLG 429 (482)
Q Consensus 363 ~~~~~~~~~~------------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~~ 429 (482)
... ..+|.+ ....-+++-++-|+|+=...++...-.+-+.||.+-.-+..-..+.++.. ..+.++=
T Consensus 107 ~~~-~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvC 185 (255)
T smart00284 107 QKE-PLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKRSASNAFMIC 185 (255)
T ss_pred EEE-EecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCcccccccEEEe
Confidence 432 223321 12244566677788874432211112345677765443333333333322 2333445
Q ss_pred CEEEEEcCCCCCCCCCeEEEEeCCCCceeecCCCCc--CCCceeEEEEcC
Q psy11333 430 GFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMST--RRKHLGCAVFVG 477 (482)
Q Consensus 430 ~~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~~~~~~--~r~~~~~~~~~~ 477 (482)
|.||++-... .....-.+.||+.+++=. -..+|. +-..+++.-++-
T Consensus 186 GvLY~~~s~~-~~~~~I~yayDt~t~~~~-~~~i~f~n~y~~~s~l~YNP 233 (255)
T smart00284 186 GILYVTRSLG-SKGEKVFYAYDTNTGKEG-HLDIPFENMYEYISMLDYNP 233 (255)
T ss_pred eEEEEEccCC-CCCcEEEEEEECCCCccc-eeeeeeccccccceeceeCC
Confidence 7899985311 112244689999887633 233443 333444444443
No 83
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=95.77 E-value=0.023 Score=38.67 Aligned_cols=56 Identities=16% Similarity=0.253 Sum_probs=44.0
Q ss_pred EEEEe-CCeEEeceeEEeeccCHHHHHHhcCCCCcCccceEEEccCCHHHHHHHHHHhhc
Q psy11333 40 VVLNV-GARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDVAMDNLIEFCYT 98 (482)
Q Consensus 40 v~i~~-~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~y~ 98 (482)
|+++. +|+.|.+.+.++. .|..++.|+.+.-.+.. .|.+++++...+..+++||+.
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 45554 5888999888876 89999999976433332 799999999999999999964
No 84
>KOG1665|consensus
Probab=95.73 E-value=0.046 Score=46.45 Aligned_cols=91 Identities=19% Similarity=0.296 Sum_probs=69.6
Q ss_pred eEEEEeCCeEEeceeEEeecc--CHHHHHHhcCCCCcCcc--ceEEEccCCHHHHHHHHHHhhcCeee-eccccHhhHHH
Q psy11333 39 DVVLNVGARKIFAHRVVLSAC--SPYFRAMFTGELAESRQ--AEVTIRDIDDVAMDNLIEFCYTSHIT-VEESNVQTLLP 113 (482)
Q Consensus 39 Dv~i~~~~~~~~~hk~iL~~~--S~~F~~~~~~~~~e~~~--~~i~l~~~~~~~~~~~l~~~y~~~~~-~~~~~~~~ll~ 113 (482)
-|.+-++|+.|.-...-|..+ -..+.+||.++-.-.++ +--.+.+-++.-|+.++.|+..|++. .+.-+|.++++
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLe 89 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLE 89 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHH
Confidence 367888898887666555444 34778999876433322 22566778999999999999999874 46669999999
Q ss_pred HhcccChhhHHHHHHH
Q psy11333 114 AACLLQLVEIQDICCE 129 (482)
Q Consensus 114 ~a~~~~~~~L~~~~~~ 129 (482)
.|++|++-.|++..++
T Consensus 90 eArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 90 EARFFQILSLKDHLED 105 (302)
T ss_pred HhhHHhhHhHHhHHhh
Confidence 9999999999987666
No 85
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.71 E-value=1.8 Score=42.03 Aligned_cols=127 Identities=23% Similarity=0.301 Sum_probs=74.0
Q ss_pred eeEEEeCCCC--CeeeccCCCCCC--------CceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCc--eeecCCCCCC
Q psy11333 304 SVERYDPQSS--DWKIVAPMSKRR--------CGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQ--WSCDVAPTTS 371 (482)
Q Consensus 304 ~~~~~d~~~~--~W~~~~~~~~~~--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~ 371 (482)
.+..+|+.+. .|+.-...+... ...+.++.++.+|+.+. + ..+++||+.+.+ |+.- .+
T Consensus 201 ~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-~-----g~l~a~d~~tG~~~W~~~-~~--- 270 (377)
T TIGR03300 201 KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY-Q-----GRVAALDLRSGRVLWKRD-AS--- 270 (377)
T ss_pred EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc-C-----CEEEEEECCCCcEEEeec-cC---
Confidence 6889998776 475432212111 11233446888888653 2 368999998775 7643 11
Q ss_pred cccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCC--ceeecCCCCCCccceEEEEECCEEEEEcCCCCCCCCCeEEE
Q psy11333 372 CRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKEN--KWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVER 449 (482)
Q Consensus 372 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~ 449 (482)
...+.+..++++|+... ...++++|..+. .|+.-. +. .+...+.+..++.||+.. .+ ..+++
T Consensus 271 --~~~~p~~~~~~vyv~~~------~G~l~~~d~~tG~~~W~~~~-~~-~~~~ssp~i~g~~l~~~~-~~-----G~l~~ 334 (377)
T TIGR03300 271 --SYQGPAVDDNRLYVTDA------DGVVVALDRRSGSELWKNDE-LK-YRQLTAPAVVGGYLVVGD-FE-----GYLHW 334 (377)
T ss_pred --CccCceEeCCEEEEECC------CCeEEEEECCCCcEEEcccc-cc-CCccccCEEECCEEEEEe-CC-----CEEEE
Confidence 12234567899998753 136888998765 476422 11 122233345677887753 33 36888
Q ss_pred EeCCCCc
Q psy11333 450 FDPKLNR 456 (482)
Q Consensus 450 y~~~~~~ 456 (482)
+|+++.+
T Consensus 335 ~d~~tG~ 341 (377)
T TIGR03300 335 LSREDGS 341 (377)
T ss_pred EECCCCC
Confidence 9987653
No 86
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.62 E-value=0.29 Score=43.82 Aligned_cols=109 Identities=21% Similarity=0.263 Sum_probs=76.8
Q ss_pred eEEE-ECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCC
Q psy11333 329 GVAV-LNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKE 407 (482)
Q Consensus 329 ~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~ 407 (482)
+... .+|.+|..-|..+ .+.+.+||+.+++-... .++|..-++=+++..+++||..-= ....+..||+.+
T Consensus 49 GL~~~~~g~LyESTG~yG---~S~l~~~d~~tg~~~~~-~~l~~~~FgEGit~~~d~l~qLTW-----k~~~~f~yd~~t 119 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYG---QSSLRKVDLETGKVLQS-VPLPPRYFGEGITILGDKLYQLTW-----KEGTGFVYDPNT 119 (264)
T ss_dssp EEEEEETTEEEEEECSTT---EEEEEEEETTTSSEEEE-EE-TTT--EEEEEEETTEEEEEES-----SSSEEEEEETTT
T ss_pred cEEecCCCEEEEeCCCCC---cEEEEEEECCCCcEEEE-EECCccccceeEEEECCEEEEEEe-----cCCeEEEEcccc
Confidence 3444 4789998877655 35788999999987655 677777777889999999999842 235789999874
Q ss_pred CceeecCCCCCCccceEEEEECCEEEEEcCCCCCCCCCeEEEEeCCC
Q psy11333 408 NKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKL 454 (482)
Q Consensus 408 ~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~ 454 (482)
.+.+...+.+..+.+++.-+..+++--|. +.++..||++
T Consensus 120 --l~~~~~~~y~~EGWGLt~dg~~Li~SDGS------~~L~~~dP~~ 158 (264)
T PF05096_consen 120 --LKKIGTFPYPGEGWGLTSDGKRLIMSDGS------SRLYFLDPET 158 (264)
T ss_dssp --TEEEEEEE-SSS--EEEECSSCEEEE-SS------SEEEEE-TTT
T ss_pred --ceEEEEEecCCcceEEEcCCCEEEEECCc------cceEEECCcc
Confidence 56677677778899999888888888885 4677777764
No 87
>KOG4350|consensus
Probab=95.40 E-value=0.02 Score=53.12 Aligned_cols=102 Identities=21% Similarity=0.365 Sum_probs=74.3
Q ss_pred eccccHhhHHHHhcccChhhHHHHHHHHHhccCCC---CC--------HHHHHHHHhhCCCH--HHHHHHHHHHH----H
Q psy11333 103 VEESNVQTLLPAACLLQLVEIQDICCEFLKRQLDP---SN--------CLGIRAFADTHSCR--DLLRIADKFTQ----H 165 (482)
Q Consensus 103 ~~~~~~~~ll~~a~~~~~~~L~~~~~~~i~~~~~~---~~--------~~~~~~~~~~~~~~--~L~~~~~~~i~----~ 165 (482)
+..+|+..++.+|.+|++++|.+.|..|+.++... ++ .+.-+...+.+-.+ +++.+...|-+ .
T Consensus 145 L~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LSk~sL~e~l~RDsFfApE~~IFlAv~~W~~~Nske 224 (620)
T KOG4350|consen 145 LKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLSKDSLKELLARDSFFAPELKIFLAVRSWHQNNSKE 224 (620)
T ss_pred HcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhcCchh
Confidence 56788889999999999999999999999976432 11 22222222333333 45777788876 4
Q ss_pred hHHHHhcccccccCCHHHHhHhhcCCCcccCChHHHHHHHH
Q psy11333 166 NFQEVMESEEFLILPVAQLVDIISSDELNVRSEEQVFNAIM 206 (482)
Q Consensus 166 ~~~~l~~~~~f~~l~~~~l~~il~~~~l~~~~e~~v~~~~~ 206 (482)
++..+++-++++.+....|...|...-|. +.+.++++|.
T Consensus 225 ~~k~~~~~VRLPLm~lteLLnvVRPsGll--spD~iLDAI~ 263 (620)
T KOG4350|consen 225 ASKVLLELVRLPLMTLTELLNVVRPSGLL--SPDTILDAIE 263 (620)
T ss_pred hHHHHHHHHhhhhccHHHHHhccCcccCc--CHHHHHHHHH
Confidence 56778888999999999999998876663 5777777774
No 88
>KOG2715|consensus
Probab=95.37 E-value=0.25 Score=40.01 Aligned_cols=102 Identities=11% Similarity=0.132 Sum_probs=81.7
Q ss_pred cCCceeEEEEeCCeEEeceeEEeeccC-HHHHHHhcCCCCcCc---cceEEEccCCHHHHHHHHHHhhcCeeeeccccHh
Q psy11333 34 HRELCDVVLNVGARKIFAHRVVLSACS-PYFRAMFTGELAESR---QAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQ 109 (482)
Q Consensus 34 ~~~~~Dv~i~~~~~~~~~hk~iL~~~S-~~F~~~~~~~~~e~~---~~~i~l~~~~~~~~~~~l~~~y~~~~~~~~~~~~ 109 (482)
++...-|.+-|+|.-|.-.|.-|...+ .|+..+.+....... +.--.+.+=+|.-|..+|.|+..|.+-++.-.=.
T Consensus 17 ~g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~ee 96 (210)
T KOG2715|consen 17 NGVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEE 96 (210)
T ss_pred CCceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhh
Confidence 455566888899999999999999887 677777766543322 2226677889999999999999998878876667
Q ss_pred hHHHHhcccChhhHHHHHHHHHhccC
Q psy11333 110 TLLPAACLLQLVEIQDICCEFLKRQL 135 (482)
Q Consensus 110 ~ll~~a~~~~~~~L~~~~~~~i~~~~ 135 (482)
++++-|++|.++.|.....+.|....
T Consensus 97 GvL~EAefyn~~~li~likd~i~dRd 122 (210)
T KOG2715|consen 97 GVLEEAEFYNDPSLIQLIKDRIQDRD 122 (210)
T ss_pred ccchhhhccCChHHHHHHHHHHHHHh
Confidence 89999999999999999988888654
No 89
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.36 E-value=1.9 Score=38.43 Aligned_cols=136 Identities=21% Similarity=0.297 Sum_probs=81.4
Q ss_pred eeEEEeCCCCC--eeeccCCCCCCCcee--EEEECCEEEEEecCCCCCCCCeEEEEeCCCCc--eeecCCCCCCccccee
Q psy11333 304 SVERYDPQSSD--WKIVAPMSKRRCGVG--VAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQ--WSCDVAPTTSCRTSVG 377 (482)
Q Consensus 304 ~~~~~d~~~~~--W~~~~~~~~~~~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~r~~~~ 377 (482)
.+..+|+.+.+ |+.- +..+..... .+..++.+|+..+ ...++++|+.+++ |+.- . +.+-. ..
T Consensus 4 ~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~-~--~~~~~-~~ 71 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFD-L--PGPIS-GA 71 (238)
T ss_dssp EEEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEE-C--SSCGG-SG
T ss_pred EEEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEee-c--ccccc-ce
Confidence 46778886663 7652 111122222 3347889998843 3579999998886 7755 2 22211 22
Q ss_pred EEEECCEEEEEeccCCCcccCeEEEEeCCCC--cee-ecCCCCCC--ccceEEEEECCEEEEEcCCCCCCCCCeEEEEeC
Q psy11333 378 VAVLDGFLYAVGGQDGVQCLNHVERYDPKEN--KWS-RVAPMTTR--RLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDP 452 (482)
Q Consensus 378 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~--~W~-~~~~~~~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~ 452 (482)
....++.+|+..+. ..+.++|..+. .|+ .....+.. +......+.++.+|+.... ..+.++|+
T Consensus 72 ~~~~~~~v~v~~~~------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~l~~~d~ 139 (238)
T PF13360_consen 72 PVVDGGRVYVGTSD------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS------GKLVALDP 139 (238)
T ss_dssp EEEETTEEEEEETT------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC------SEEEEEET
T ss_pred eeecccccccccce------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc------CcEEEEec
Confidence 47789999888632 37899997755 698 34332222 2333444457777777642 57899998
Q ss_pred CCC--ceeecCCC
Q psy11333 453 KLN--RWTAMAPM 463 (482)
Q Consensus 453 ~~~--~W~~~~~~ 463 (482)
++. .|+.-...
T Consensus 140 ~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 140 KTGKLLWKYPVGE 152 (238)
T ss_dssp TTTEEEEEEESST
T ss_pred CCCcEEEEeecCC
Confidence 866 47764333
No 90
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.34 E-value=0.27 Score=44.07 Aligned_cols=146 Identities=21% Similarity=0.254 Sum_probs=89.3
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCceeecC
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDV 366 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 366 (482)
++.+|.--|..+ -+.+..+|+.+.+-....++|..-.+-+++.++++||..==. ...+++||+.+- +.+
T Consensus 55 ~g~LyESTG~yG---~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk-----~~~~f~yd~~tl--~~~- 123 (264)
T PF05096_consen 55 DGTLYESTGLYG---QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK-----EGTGFVYDPNTL--KKI- 123 (264)
T ss_dssp TTEEEEEECSTT---EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS-----SSEEEEEETTTT--EEE-
T ss_pred CCEEEEeCCCCC---cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec-----CCeEEEEccccc--eEE-
Confidence 456665555332 257899999999887777888878888999999999987422 247899999864 444
Q ss_pred CCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccce------EEEEECCEEEEEcCCCC
Q psy11333 367 APTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGV------AVAVLGGFLYAIGGSDG 440 (482)
Q Consensus 367 ~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~------~~~~~~~~i~v~GG~~~ 440 (482)
...+.+..+-+++..+..+|+.-|. +.++.+||++-+= ...+.....+. -+-.++|.||.=-=
T Consensus 124 ~~~~y~~EGWGLt~dg~~Li~SDGS------~~L~~~dP~~f~~--~~~i~V~~~g~pv~~LNELE~i~G~IyANVW--- 192 (264)
T PF05096_consen 124 GTFPYPGEGWGLTSDGKRLIMSDGS------SRLYFLDPETFKE--VRTIQVTDNGRPVSNLNELEYINGKIYANVW--- 192 (264)
T ss_dssp EEEE-SSS--EEEECSSCEEEE-SS------SEEEEE-TTT-SE--EEEEE-EETTEE---EEEEEEETTEEEEEET---
T ss_pred EEEecCCcceEEEcCCCEEEEECCc------cceEEECCcccce--EEEEEEEECCEECCCcEeEEEEcCEEEEEeC---
Confidence 4445555677888888889998773 6788899885432 22211111111 12334555554321
Q ss_pred CCCCCeEEEEeCCCCc
Q psy11333 441 QSPLNTVERFDPKLNR 456 (482)
Q Consensus 441 ~~~~~~~~~y~~~~~~ 456 (482)
..+.|.+-||.+++
T Consensus 193 --~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 193 --QTDRIVRIDPETGK 206 (264)
T ss_dssp --TSSEEEEEETTT-B
T ss_pred --CCCeEEEEeCCCCe
Confidence 24678999999885
No 91
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.29 E-value=3.1 Score=40.35 Aligned_cols=144 Identities=19% Similarity=0.231 Sum_probs=82.2
Q ss_pred CCcEEEEeccccCCCCCceeEEEeCCCC--CeeeccCCCC--CCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCc
Q psy11333 286 RGEVLFAVGGWCSGDAISSVERYDPQSS--DWKIVAPMSK--RRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQ 361 (482)
Q Consensus 286 ~~~~l~~~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~~~--~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 361 (482)
.++.+|+..+ ...++.+|+.+. .|+.-...+. .+...+.++.++.+|+ |..+ ..+..+|+.+.+
T Consensus 144 ~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~~-----g~v~ald~~tG~ 211 (377)
T TIGR03300 144 ANGLVVVRTN------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFAG-----GKLVALDLQTGQ 211 (377)
T ss_pred ECCEEEEECC------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECCC-----CEEEEEEccCCC
Confidence 3566666543 135889999876 4765332221 1222334455776554 4322 368899998764
Q ss_pred --eeecCCCCCCcc--------cceeEEEECCEEEEEeccCCCcccCeEEEEeCCCC--ceeecCCCCCCccceEEEEEC
Q psy11333 362 --WSCDVAPTTSCR--------TSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKEN--KWSRVAPMTTRRLGVAVAVLG 429 (482)
Q Consensus 362 --W~~~~~~~~~~r--------~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~~~~~~~~ 429 (482)
|+.- ...+... ...+.++.++.+|+.+.. ..+.+||+.+. .|..-. ......++.+
T Consensus 212 ~~W~~~-~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~d~~tG~~~W~~~~-----~~~~~p~~~~ 279 (377)
T TIGR03300 212 PLWEQR-VALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAALDLRSGRVLWKRDA-----SSYQGPAVDD 279 (377)
T ss_pred Eeeeec-cccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEEECCCCcEEEeecc-----CCccCceEeC
Confidence 8643 1111111 112334568888886532 35889998765 476531 1122344568
Q ss_pred CEEEEEcCCCCCCCCCeEEEEeCCCC--ceee
Q psy11333 430 GFLYAIGGSDGQSPLNTVERFDPKLN--RWTA 459 (482)
Q Consensus 430 ~~i~v~GG~~~~~~~~~~~~y~~~~~--~W~~ 459 (482)
+++|+..+. ..++++|..+. .|+.
T Consensus 280 ~~vyv~~~~------G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 280 NRLYVTDAD------GVVVALDRRSGSELWKN 305 (377)
T ss_pred CEEEEECCC------CeEEEEECCCCcEEEcc
Confidence 899987532 46899998765 4765
No 92
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=95.24 E-value=0.037 Score=41.98 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=55.4
Q ss_pred HhhHHHHhcccChhhHHHHHHHHHhccCCCC---CH--------HHHHHHHhhC---CCHHHHHHHHHHHHHh------H
Q psy11333 108 VQTLLPAACLLQLVEIQDICCEFLKRQLDPS---NC--------LGIRAFADTH---SCRDLLRIADKFTQHN------F 167 (482)
Q Consensus 108 ~~~ll~~a~~~~~~~L~~~~~~~i~~~~~~~---~~--------~~~~~~~~~~---~~~~L~~~~~~~i~~~------~ 167 (482)
|.+++.+|+.|++++|.+.|.+++..++... .. +..+...+.. +...+++++.+|+..+ +
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~~~~~~~ 80 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDPERRRHL 80 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCHHHHHHH
Confidence 5678899999999999999999998875321 11 1111111122 2356789999998644 4
Q ss_pred HHHhcccccccCCHHHHhHh
Q psy11333 168 QEVMESEEFLILPVAQLVDI 187 (482)
Q Consensus 168 ~~l~~~~~f~~l~~~~l~~i 187 (482)
..+++..+|..++.+.+...
T Consensus 81 ~~ll~~ir~~~~~~~~l~~~ 100 (101)
T smart00875 81 PELLSHVRFPLLSPEYLLEV 100 (101)
T ss_pred HHHHHhCCCCCCCHHHHHhh
Confidence 56888899999998877653
No 93
>KOG1724|consensus
Probab=95.18 E-value=0.037 Score=45.58 Aligned_cols=91 Identities=14% Similarity=0.263 Sum_probs=63.6
Q ss_pred CCeEEeceeEEeeccCHHHHHHhcCCCCcCccceEEEccCCHHHHHHHHHHhhcCee-----------------------
Q psy11333 45 GARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDVAMDNLIEFCYTSHI----------------------- 101 (482)
Q Consensus 45 ~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~y~~~~----------------------- 101 (482)
+|+.|.+-..+.. .|..+..++...-.......|.|+++....|..++.||+...-
T Consensus 13 DG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 5788888777664 5777777664321111114699999999999999999987331
Q ss_pred --eeccccHhhHHHHhcccChhhHHHHHHHHHhccCC
Q psy11333 102 --TVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLD 136 (482)
Q Consensus 102 --~~~~~~~~~ll~~a~~~~~~~L~~~~~~~i~~~~~ 136 (482)
.++...+.++..+|++|.++.|.+.|++.+...+.
T Consensus 92 Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mik 128 (162)
T KOG1724|consen 92 FLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIK 128 (162)
T ss_pred HHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHc
Confidence 12334567788888888888888888877765554
No 94
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.07 E-value=2 Score=37.10 Aligned_cols=140 Identities=16% Similarity=0.185 Sum_probs=73.9
Q ss_pred CCcEEEEeccccCCCCCceeEEEeCCCCCe--eec----cCCCCCCCceeEEEE-CCEEEEEecCCCCCCCCeEEEEeCC
Q psy11333 286 RGEVLFAVGGWCSGDAISSVERYDPQSSDW--KIV----APMSKRRCGVGVAVL-NDLLYAVGGHDGQSYLNSIERYDPQ 358 (482)
Q Consensus 286 ~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W--~~~----~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~ 358 (482)
..+++|++-| +.+|+++...... ..+ +.+|. ...++...- ++++|++-| +..++|+..
T Consensus 15 ~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg-------~~yw~~~~~ 79 (194)
T cd00094 15 LRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKG-------DKYWVYTGK 79 (194)
T ss_pred eCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECC-------CEEEEEcCc
Confidence 3588999977 4577777652221 111 11221 122222222 389999977 457888876
Q ss_pred CCcee---ecCC-CCCC-cccceeEEEE--CCEEEEEeccCCCcccCeEEEEeCCCCceee-----c----CCCCCCccc
Q psy11333 359 TNQWS---CDVA-PTTS-CRTSVGVAVL--DGFLYAVGGQDGVQCLNHVERYDPKENKWSR-----V----APMTTRRLG 422 (482)
Q Consensus 359 ~~~W~---~~~~-~~~~-~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~-----~----~~~~~~r~~ 422 (482)
+..+. .+.. ..+. +..--++... ++++|++.| +..++||..+++... + +.+| ...
T Consensus 80 ~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p--~~i 150 (194)
T cd00094 80 NLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGVP--DKV 150 (194)
T ss_pred ccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCcC--CCc
Confidence 53321 1100 1111 0111122233 689999987 356777765444321 0 1122 222
Q ss_pred eEEEEE-CCEEEEEcCCCCCCCCCeEEEEeCCCCc
Q psy11333 423 VAVAVL-GGFLYAIGGSDGQSPLNTVERFDPKLNR 456 (482)
Q Consensus 423 ~~~~~~-~~~i~v~GG~~~~~~~~~~~~y~~~~~~ 456 (482)
.++... ++++|++-| +..++||..+++
T Consensus 151 daa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 151 DAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred ceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 233334 489999988 468999988765
No 95
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.02 E-value=3.2 Score=41.04 Aligned_cols=145 Identities=16% Similarity=0.079 Sum_probs=79.7
Q ss_pred ceeEEEeCCCCCeeeccCCCCCCCceeEEE-ECC-EEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEE
Q psy11333 303 SSVERYDPQSSDWKIVAPMSKRRCGVGVAV-LND-LLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAV 380 (482)
Q Consensus 303 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~ 380 (482)
..++.+|+.+.+-+.+...+... ..... -+| +|++....++ ...++.+|..++..+.+ ...+..-..+ ...
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~--~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~l-t~~~~~~~~~-~~s 295 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLN--GAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRV-TNHPAIDTEP-FWG 295 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCc--CCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEc-ccCCCCcCCe-EEC
Confidence 47899999998877765443211 11222 244 5554432222 25799999999998887 3322111112 222
Q ss_pred ECC-EEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEE-EECC-EEEEEcCCCCCCCCCeEEEEeCCCCce
Q psy11333 381 LDG-FLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVA-VLGG-FLYAIGGSDGQSPLNTVERFDPKLNRW 457 (482)
Q Consensus 381 ~~~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~-~i~v~GG~~~~~~~~~~~~y~~~~~~W 457 (482)
-+| +|+.....++ ...++.+|..+.++..+.... ....... .-+| .|++....++ ...++.+|..+.++
T Consensus 296 pDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~~~---~~~l~~~dl~tg~~ 367 (430)
T PRK00178 296 KDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG--NYNARPRLSADGKTLVMVHRQDG---NFHVAAQDLQRGSV 367 (430)
T ss_pred CCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEEEEccCC---ceEEEEEECCCCCE
Confidence 244 4555432222 247889999888887765221 1111122 2244 5555543332 24689999988877
Q ss_pred eecCC
Q psy11333 458 TAMAP 462 (482)
Q Consensus 458 ~~~~~ 462 (482)
+.+..
T Consensus 368 ~~lt~ 372 (430)
T PRK00178 368 RILTD 372 (430)
T ss_pred EEccC
Confidence 76643
No 96
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.83 E-value=3.3 Score=41.25 Aligned_cols=146 Identities=15% Similarity=0.041 Sum_probs=80.2
Q ss_pred ceeEEEeCCCCCeeeccCCCCCCCceeEEEECC-EEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEE
Q psy11333 303 SSVERYDPQSSDWKIVAPMSKRRCGVGVAVLND-LLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVL 381 (482)
Q Consensus 303 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~ 381 (482)
..++.+|+.+.+-..+...+....... ..-+| .|++....++ ...++.+|..+++.+++ ........ .....-
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~-wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~l-t~~~~~~~-~p~wSp 315 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPR-FSPDGKKLALVLSKDG---QPEIYVVDIATKALTRI-TRHRAIDT-EPSWHP 315 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCee-ECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEEC-ccCCCCcc-ceEECC
Confidence 579999999887766655432222111 11244 5666544332 24799999999998887 33221111 122233
Q ss_pred CC-EEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECC-EEEEEcCCCCCCCCCeEEEEeCCCCceee
Q psy11333 382 DG-FLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGG-FLYAIGGSDGQSPLNTVERFDPKLNRWTA 459 (482)
Q Consensus 382 ~~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~y~~~~~~W~~ 459 (482)
+| .|+.....++ ...++.+|+.+.++..+..-. .........-+| .|++.+..++ ...++.+|+.+.+...
T Consensus 316 DG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~g---~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 316 DGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTNG---KFNIARQDLETGAMQV 388 (448)
T ss_pred CCCEEEEEECCCC---CceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecCC---ceEEEEEECCCCCeEE
Confidence 44 4554432222 257999999988888764211 111111222355 4555443222 2468889988887766
Q ss_pred cC
Q psy11333 460 MA 461 (482)
Q Consensus 460 ~~ 461 (482)
+.
T Consensus 389 lt 390 (448)
T PRK04792 389 LT 390 (448)
T ss_pred cc
Confidence 54
No 97
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.61 E-value=3.8 Score=40.24 Aligned_cols=146 Identities=14% Similarity=0.016 Sum_probs=79.6
Q ss_pred ceeEEEeCCCCCeeeccCCCCCCCceeEEEECC-EEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEE
Q psy11333 303 SSVERYDPQSSDWKIVAPMSKRRCGVGVAVLND-LLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVL 381 (482)
Q Consensus 303 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~ 381 (482)
..++.+|..+.+...+...+...... ...-++ .|++....++ ...++.+|..++..+.+ ........... ..-
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~-~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l-~~~~~~~~~~~-~s~ 287 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAP-AFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRL-TNGPGIDTEPS-WSP 287 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccce-EECCCCCEEEEEECCCC---CccEEEEECCCCCEEEC-CCCCCCCCCEE-ECC
Confidence 57899999988766655443222221 112244 5665543322 24689999999887777 32221111111 222
Q ss_pred CCE-EEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEE-EEECCEEEEEcCCCCCCCCCeEEEEeCCCCceee
Q psy11333 382 DGF-LYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAV-AVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTA 459 (482)
Q Consensus 382 ~~~-lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~-~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~~W~~ 459 (482)
+|+ |+......+ ...++.+|..+.++..+..-. ...... ..-+|+.+++....+ ....++.+|+.+..++.
T Consensus 288 dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~--~~~~~~~~spdg~~i~~~~~~~--~~~~i~~~d~~~~~~~~ 360 (417)
T TIGR02800 288 DGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG--GYNASPSWSPDGDLIAFVHREG--GGFNIAVMDLDGGGERV 360 (417)
T ss_pred CCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC--CCccCeEECCCCCEEEEEEccC--CceEEEEEeCCCCCeEE
Confidence 444 444432222 247899999888877665321 121222 223555555544332 23578999998877766
Q ss_pred cC
Q psy11333 460 MA 461 (482)
Q Consensus 460 ~~ 461 (482)
+.
T Consensus 361 l~ 362 (417)
T TIGR02800 361 LT 362 (417)
T ss_pred cc
Confidence 64
No 98
>KOG2714|consensus
Probab=94.37 E-value=0.11 Score=48.89 Aligned_cols=86 Identities=20% Similarity=0.278 Sum_probs=68.4
Q ss_pred EEEEeCCeEEeceeEEeecc--CHHHHHHhcCCCCcCccce-EEEccCCHHHHHHHHHHhhcCeeeeccccHhhHHH-Hh
Q psy11333 40 VVLNVGARKIFAHRVVLSAC--SPYFRAMFTGELAESRQAE-VTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLP-AA 115 (482)
Q Consensus 40 v~i~~~~~~~~~hk~iL~~~--S~~F~~~~~~~~~e~~~~~-i~l~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ll~-~a 115 (482)
|.|-|+|+.|.-.+.-|+.. -.||.+++++++....... ..+.|=+|+.|..+|.++.|+++++.......++. =|
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~~~llhdEA 92 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFPERLLHDEA 92 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCchhhhhhhhh
Confidence 67889999999888888654 4799999999886665433 45567799999999999999988775544455554 89
Q ss_pred cccChhhHHH
Q psy11333 116 CLLQLVEIQD 125 (482)
Q Consensus 116 ~~~~~~~L~~ 125 (482)
.+|++..|..
T Consensus 93 ~fYGl~~llr 102 (465)
T KOG2714|consen 93 MFYGLTPLLR 102 (465)
T ss_pred hhcCcHHHHH
Confidence 9999999886
No 99
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=94.28 E-value=2.7 Score=38.73 Aligned_cols=101 Identities=18% Similarity=0.228 Sum_probs=53.2
Q ss_pred EEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEE-ECC-EEEEEecCCCCCCCCeEEEEeCCCCceeecC
Q psy11333 289 VLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAV-LND-LLYAVGGHDGQSYLNSIERYDPQTNQWSCDV 366 (482)
Q Consensus 289 ~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 366 (482)
.+|+.++.. ..+..+|+.+++-...-.... + ..+++. -++ .+|+.++.+ +.+..||+.+.+.....
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~~-~-~~~l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~ 69 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVGQ-R-PRGITLSKDGKLLYVCASDS-----DTIQVIDLATGEVIGTL 69 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEECCC-C-CCceEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEec
Confidence 456665532 368888988765422211111 1 122333 244 577777533 46889999988765431
Q ss_pred CCCCCcccceeEEE-E-CCEEEEEeccCCCcccCeEEEEeCCCCc
Q psy11333 367 APTTSCRTSVGVAV-L-DGFLYAVGGQDGVQCLNHVERYDPKENK 409 (482)
Q Consensus 367 ~~~~~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~ 409 (482)
+....++ .++. - ++.+|+.++.+ ..+..||+.+.+
T Consensus 70 ~~~~~~~---~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~ 106 (300)
T TIGR03866 70 PSGPDPE---LFALHPNGKILYIANEDD-----NLVTVIDIETRK 106 (300)
T ss_pred cCCCCcc---EEEECCCCCEEEEEcCCC-----CeEEEEECCCCe
Confidence 2211121 2222 2 34566665432 368889987654
No 100
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.90 E-value=1.5 Score=41.36 Aligned_cols=114 Identities=14% Similarity=0.138 Sum_probs=75.7
Q ss_pred CeEEEEeCCCC-----ceeecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCc-eeecCCCCCCccce
Q psy11333 350 NSIERYDPQTN-----QWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENK-WSRVAPMTTRRLGV 423 (482)
Q Consensus 350 ~~~~~yd~~~~-----~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~~ 423 (482)
..+..|+.... +++.+ .....+-.-.+++.+++++.+..| +.+..|+...++ |...+.+..+-...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i-~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l~~~~~l~~~~~~~~~~~i~ 133 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLI-HSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDLDNSKTLLKKAFYDSPFYIT 133 (321)
T ss_dssp EEEEEEEECSS-----EEEEE-EEEEESS-EEEEEEETTEEEEEET-------TEEEEEEEETTSSEEEEEEE-BSSSEE
T ss_pred cEEEEEEEEcccccceEEEEE-EEEeecCcceEhhhhCCEEEEeec-------CEEEEEEccCcccchhhheecceEEEE
Confidence 56888888875 55554 322333334677788999776665 568888888887 88888777777777
Q ss_pred EEEEECCEEEEEcCCCCCCCCCeEEEEeCCCCceeecCCCCcCCCceeEEEE
Q psy11333 424 AVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVF 475 (482)
Q Consensus 424 ~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~~~~~~~r~~~~~~~~ 475 (482)
.+.+.++.|++---..+ -.++.|+.+.++-..++..+.++...++..+
T Consensus 134 sl~~~~~~I~vgD~~~s----v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l 181 (321)
T PF03178_consen 134 SLSVFKNYILVGDAMKS----VSLLRYDEENNKLILVARDYQPRWVTAAEFL 181 (321)
T ss_dssp EEEEETTEEEEEESSSS----EEEEEEETTTE-EEEEEEESS-BEEEEEEEE
T ss_pred EEeccccEEEEEEcccC----EEEEEEEccCCEEEEEEecCCCccEEEEEEe
Confidence 88888886665433322 2456778877778888877677776666666
No 101
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.89 E-value=7.4 Score=38.56 Aligned_cols=145 Identities=15% Similarity=0.101 Sum_probs=79.1
Q ss_pred ceeEEEeCCCCCeeeccCCCCCCCceeEEEECC-EEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEE
Q psy11333 303 SSVERYDPQSSDWKIVAPMSKRRCGVGVAVLND-LLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVL 381 (482)
Q Consensus 303 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~ 381 (482)
..++.+|..+++-..+...+.... .....-+| +|++....++ ..+++.+|+.++..+.+ .......... ...-
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~l-t~~~~~~~~~-~~sp 301 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRL-TNHFGIDTEP-TWAP 301 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEEC-ccCCCCccce-EECC
Confidence 568999999888776665432211 11112244 5655443332 24799999999887776 3222111112 2233
Q ss_pred CCE-EEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEE-EECC-EEEEEcCCCCCCCCCeEEEEeCCCCcee
Q psy11333 382 DGF-LYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVA-VLGG-FLYAIGGSDGQSPLNTVERFDPKLNRWT 458 (482)
Q Consensus 382 ~~~-lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~-~i~v~GG~~~~~~~~~~~~y~~~~~~W~ 458 (482)
+|+ |+......+ ...++.+|..+.+++.+..- +....... .-+| .|++..+.++ ...++.+|+.++++.
T Consensus 302 DG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~~~~---~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 302 DGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQ--GNYNARASVSPDGKKIAMVHGSGG---QYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCEEEEEECCCC---CceEEEEECCCCCeEEeecC--CCCccCEEECCCCCEEEEEECCCC---ceeEEEEECCCCCeE
Confidence 454 444432222 24788899888887766421 12222222 2244 5655544322 247899998888777
Q ss_pred ecC
Q psy11333 459 AMA 461 (482)
Q Consensus 459 ~~~ 461 (482)
.+.
T Consensus 374 ~Lt 376 (433)
T PRK04922 374 TLT 376 (433)
T ss_pred ECC
Confidence 664
No 102
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.83 E-value=6.1 Score=40.17 Aligned_cols=118 Identities=19% Similarity=0.287 Sum_probs=67.4
Q ss_pred CCCCCcEEEEeccccCCCCCceeEEEeCCCC--CeeeccCCCCC--------CCceeEEEECCEEEEEecCCCCCCCCeE
Q psy11333 283 PSRRGEVLFAVGGWCSGDAISSVERYDPQSS--DWKIVAPMSKR--------RCGVGVAVLNDLLYAVGGHDGQSYLNSI 352 (482)
Q Consensus 283 ~~~~~~~l~~~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~~~~--------~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 352 (482)
.++.++.||+.... ..++.+|..+. .|+.-...+.. ....+.++.+++||+... + ..+
T Consensus 65 Pvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-d-----g~l 132 (527)
T TIGR03075 65 PLVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-D-----ARL 132 (527)
T ss_pred CEEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-C-----CEE
Confidence 44568889886542 35889998875 48654332211 112335667888887432 2 368
Q ss_pred EEEeCCCCc--eeecCCCCCCc-ccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCC--ceee
Q psy11333 353 ERYDPQTNQ--WSCDVAPTTSC-RTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKEN--KWSR 412 (482)
Q Consensus 353 ~~yd~~~~~--W~~~~~~~~~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~--~W~~ 412 (482)
.++|.+|.+ |+.-....... ....+-++.+++||+-.+.........+..||.+|. .|+.
T Consensus 133 ~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 133 VALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 999999886 87541211111 112233566888877533211112346888888866 4654
No 103
>PTZ00421 coronin; Provisional
Probab=93.80 E-value=8.2 Score=38.83 Aligned_cols=153 Identities=12% Similarity=0.090 Sum_probs=72.1
Q ss_pred cEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCc-eeEEE-ECCEEEEEecCCCCCCCCeEEEEeCCCCcee-e
Q psy11333 288 EVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCG-VGVAV-LNDLLYAVGGHDGQSYLNSIERYDPQTNQWS-C 364 (482)
Q Consensus 288 ~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~ 364 (482)
+.+++.||.. ..+..+|..+.+-.. .+...... .+++. .++.+.+.|+.+ ..+..||+.+++-. .
T Consensus 138 ~~iLaSgs~D-----gtVrIWDl~tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 138 MNVLASAGAD-----MVVNVWDVERGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGTIVSS 205 (493)
T ss_pred CCEEEEEeCC-----CEEEEEECCCCeEEE--EEcCCCCceEEEEEECCCCEEEEecCC-----CEEEEEECCCCcEEEE
Confidence 3455555532 357788887764321 11111111 12222 367788888765 36889999877522 2
Q ss_pred cCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceee-cCCCCCCccceEEEEE--CCEEEEEcCCCCC
Q psy11333 365 DVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSR-VAPMTTRRLGVAVAVL--GGFLYAIGGSDGQ 441 (482)
Q Consensus 365 ~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~ 441 (482)
+ ......+........++..++.+|.+.. ....+..||+.+..... ...... .....+..+ ++.++++||..+
T Consensus 206 l-~~H~~~~~~~~~w~~~~~~ivt~G~s~s-~Dr~VklWDlr~~~~p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgD- 281 (493)
T PTZ00421 206 V-EAHASAKSQRCLWAKRKDLIITLGCSKS-QQRQIMLWDTRKMASPYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGE- 281 (493)
T ss_pred E-ecCCCCcceEEEEcCCCCeEEEEecCCC-CCCeEEEEeCCCCCCceeEeccCC-CCceEEEEEcCCCCEEEEEEeCC-
Confidence 2 1111111111122223334444453321 12468889986432110 001111 111222223 556666666422
Q ss_pred CCCCeEEEEeCCCCceee
Q psy11333 442 SPLNTVERFDPKLNRWTA 459 (482)
Q Consensus 442 ~~~~~~~~y~~~~~~W~~ 459 (482)
..|.+||..+++...
T Consensus 282 ---g~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 282 ---GNIRCFELMNERLTF 296 (493)
T ss_pred ---CeEEEEEeeCCceEE
Confidence 468888887766543
No 104
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.72 E-value=3.6 Score=37.08 Aligned_cols=142 Identities=24% Similarity=0.262 Sum_probs=82.8
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEEE--CCEEEEEecCCCCCCCCeEEEEeCCCCceee
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVL--NDLLYAVGGHDGQSYLNSIERYDPQTNQWSC 364 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 364 (482)
++.+|+..- ....++++|+.+.+-....... ..+++.. ++.+|+..+. ....+|+.+++++.
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~~-------~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADSG-------GIAVVDPDTGKVTV 74 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEETT-------CEEEEETTTTEEEE
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEcC-------ceEEEecCCCcEEE
Confidence 577777742 2357999999998765533222 3445554 7888887652 35667999999987
Q ss_pred cCCCC-----CCcccceeEEEECCEEEEEeccCC-Cccc--CeEEEEeCCCCceeecC-CCCCCccceEEEEE-CC-EEE
Q psy11333 365 DVAPT-----TSCRTSVGVAVLDGFLYAVGGQDG-VQCL--NHVERYDPKENKWSRVA-PMTTRRLGVAVAVL-GG-FLY 433 (482)
Q Consensus 365 ~~~~~-----~~~r~~~~~~~~~~~lyv~GG~~~-~~~~--~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~~-~~-~i~ 433 (482)
+ ... +..+.+-.++.-+|.+|+..-... .... ..++++++. .+...+. .+..| .+++.. ++ .||
T Consensus 75 ~-~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~ly 149 (246)
T PF08450_consen 75 L-ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLY 149 (246)
T ss_dssp E-EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEE
T ss_pred E-eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchhee
Confidence 7 332 233333444555788998753221 1111 579999998 5555443 22221 233333 44 577
Q ss_pred EEcCCCCCCCCCeEEEEeCCC
Q psy11333 434 AIGGSDGQSPLNTVERFDPKL 454 (482)
Q Consensus 434 v~GG~~~~~~~~~~~~y~~~~ 454 (482)
+.--. ...+++|+...
T Consensus 150 v~ds~-----~~~i~~~~~~~ 165 (246)
T PF08450_consen 150 VADSF-----NGRIWRFDLDA 165 (246)
T ss_dssp EEETT-----TTEEEEEEEET
T ss_pred ecccc-----cceeEEEeccc
Confidence 75332 25699998853
No 105
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.59 E-value=1.6 Score=41.31 Aligned_cols=139 Identities=18% Similarity=0.169 Sum_probs=87.4
Q ss_pred cEEEEecccc--CCC--CC-ceeEEEeCCCC-----CeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeC
Q psy11333 288 EVLFAVGGWC--SGD--AI-SSVERYDPQSS-----DWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDP 357 (482)
Q Consensus 288 ~~l~~~GG~~--~~~--~~-~~~~~~d~~~~-----~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 357 (482)
...+++|.-. +.. .. -.+..|+.... +++.+.....+..-.+++.++++|.+..| +.+..|+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l 114 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDL 114 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEc
Confidence 4666666432 111 22 45888888884 56666554444445677778999766665 46888888
Q ss_pred CCCc-eeecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEE-CCEEEEE
Q psy11333 358 QTNQ-WSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVL-GGFLYAI 435 (482)
Q Consensus 358 ~~~~-W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~i~v~ 435 (482)
..++ +... +....+-...++.+.++.|++.--..+ -.+..|+....+-..++.-..++...++..+ ++..++.
T Consensus 115 ~~~~~l~~~-~~~~~~~~i~sl~~~~~~I~vgD~~~s----v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~ 189 (321)
T PF03178_consen 115 DNSKTLLKK-AFYDSPFYITSLSVFKNYILVGDAMKS----VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIV 189 (321)
T ss_dssp ETTSSEEEE-EEE-BSSSEEEEEEETTEEEEEESSSS----EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEE
T ss_pred cCcccchhh-heecceEEEEEEeccccEEEEEEcccC----EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEE
Confidence 8888 8777 665555566777788887765533322 2456778866667777766667777777777 6664444
Q ss_pred cCC
Q psy11333 436 GGS 438 (482)
Q Consensus 436 GG~ 438 (482)
+..
T Consensus 190 ~D~ 192 (321)
T PF03178_consen 190 GDK 192 (321)
T ss_dssp EET
T ss_pred EcC
Confidence 443
No 106
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=93.22 E-value=1.1 Score=35.81 Aligned_cols=82 Identities=21% Similarity=0.207 Sum_probs=56.4
Q ss_pred EECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCC--CCCcccceeEEEECCEEEEEeccCCCc-ccCeEEEE-eCCC
Q psy11333 332 VLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAP--TTSCRTSVGVAVLDGFLYAVGGQDGVQ-CLNHVERY-DPKE 407 (482)
Q Consensus 332 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--~~~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~y-d~~~ 407 (482)
.+||.+|..+-. .......+.+||..+.+|+.+..| .........++.++|+|-++.-..... ..-++|+. |..+
T Consensus 3 cinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 3 CINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred EECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 458889887765 223456799999999999988333 234455678889999999986543321 23466666 4557
Q ss_pred CceeecC
Q psy11333 408 NKWSRVA 414 (482)
Q Consensus 408 ~~W~~~~ 414 (482)
.+|.+..
T Consensus 82 ~~Wsk~~ 88 (129)
T PF08268_consen 82 QEWSKKH 88 (129)
T ss_pred ceEEEEE
Confidence 7898753
No 107
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.02 E-value=10 Score=38.21 Aligned_cols=116 Identities=13% Similarity=0.210 Sum_probs=64.7
Q ss_pred CCCCCcEEEEeccccCCCCCceeEEEeCCCC--CeeeccCCCC----C-CCceeEEEEC-CEEEEEecCCCCCCCCeEEE
Q psy11333 283 PSRRGEVLFAVGGWCSGDAISSVERYDPQSS--DWKIVAPMSK----R-RCGVGVAVLN-DLLYAVGGHDGQSYLNSIER 354 (482)
Q Consensus 283 ~~~~~~~l~~~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~~~----~-~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~ 354 (482)
.++.++.+|+.... ..++.+|..+. .|+.-...+. + -....+++.+ +.||+... + ..+++
T Consensus 57 Pvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-~-----g~v~A 124 (488)
T cd00216 57 PLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-D-----GRLVA 124 (488)
T ss_pred CEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-C-----CeEEE
Confidence 44568888887542 46889998875 4865332220 0 1112234556 78886432 2 36899
Q ss_pred EeCCCCc--eeecCCCCCC-cc--cceeEEEECCEEEEEeccCCC----cccCeEEEEeCCCC--ceee
Q psy11333 355 YDPQTNQ--WSCDVAPTTS-CR--TSVGVAVLDGFLYAVGGQDGV----QCLNHVERYDPKEN--KWSR 412 (482)
Q Consensus 355 yd~~~~~--W~~~~~~~~~-~r--~~~~~~~~~~~lyv~GG~~~~----~~~~~~~~yd~~~~--~W~~ 412 (482)
+|..+.+ |+.- ..... .. ...+.++.++.+|+ |..+.. .....++++|..|. .|..
T Consensus 125 lD~~TG~~~W~~~-~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 125 LDAETGKQVWKFG-NNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred EECCCCCEeeeec-CCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEe
Confidence 9998775 8855 22111 11 12233455676665 432111 12357899999865 5865
No 108
>KOG2055|consensus
Probab=92.83 E-value=4 Score=39.16 Aligned_cols=148 Identities=16% Similarity=0.129 Sum_probs=81.4
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEE--EECCE-EEEEecCCCCCCCCeEEEEeCCCCcee
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVA--VLNDL-LYAVGGHDGQSYLNSIERYDPQTNQWS 363 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~--~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~ 363 (482)
..-+.+.+|... .-.++..|-.+|. .+..+-..++.-..+ .-+|+ ..+.+|. ..-++.||..+.+-.
T Consensus 224 ~~plllvaG~d~---~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-----rky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 224 TAPLLLVAGLDG---TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR-----RKYLYSYDLETAKVT 293 (514)
T ss_pred CCceEEEecCCC---cEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc-----ceEEEEeeccccccc
Confidence 345666777532 2345666666665 333332222221111 22555 6666664 345899999999988
Q ss_pred ecCCCCCCc--ccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECCEEEEEcCCCCC
Q psy11333 364 CDVAPTTSC--RTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQ 441 (482)
Q Consensus 364 ~~~~~~~~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~ 441 (482)
++.++-..+ -...-.++.++...++-|..+ -++.+..+|+.|-.--.++-.........-+..|+++||.
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~--- 365 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT--- 365 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC---
Confidence 882222111 112233445666777777544 3566777788875433333333333333224468888886
Q ss_pred CCCCeEEEEeCCCC
Q psy11333 442 SPLNTVERFDPKLN 455 (482)
Q Consensus 442 ~~~~~~~~y~~~~~ 455 (482)
..||++|...+
T Consensus 366 ---GeV~v~nl~~~ 376 (514)
T KOG2055|consen 366 ---GEVYVWNLRQN 376 (514)
T ss_pred ---ceEEEEecCCc
Confidence 47999998766
No 109
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.67 E-value=6.1 Score=35.51 Aligned_cols=165 Identities=18% Similarity=0.205 Sum_probs=91.9
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEE-ECCEEEEEecCCCCCCCCeEEEEeCCCCceeec
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAV-LNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCD 365 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 365 (482)
.+.|++.|-.. .. =++||.++.-+..+. |......++|+ -+|.+|+..=.. +.+-..||.+..=+.+
T Consensus 158 ~G~lWFt~q~G---~y---GrLdPa~~~i~vfpa-PqG~gpyGi~atpdGsvwyaslag-----naiaridp~~~~aev~ 225 (353)
T COG4257 158 WGNLWFTGQIG---AY---GRLDPARNVISVFPA-PQGGGPYGICATPDGSVWYASLAG-----NAIARIDPFAGHAEVV 225 (353)
T ss_pred CccEEEeeccc---cc---eecCcccCceeeecc-CCCCCCcceEECCCCcEEEEeccc-----cceEEcccccCCccee
Confidence 46677666421 11 157777776554443 24444455555 588888763211 4567888888865555
Q ss_pred CCCCCCcccce---eEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCC-CCCCccceEEEEECCEEEEEcCCCCC
Q psy11333 366 VAPTTSCRTSV---GVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAP-MTTRRLGVAVAVLGGFLYAIGGSDGQ 441 (482)
Q Consensus 366 ~~~~~~~r~~~---~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~r~~~~~~~~~~~i~v~GG~~~~ 441 (482)
+.|.+.... ..+---+++++.- .....+++|||.+..|.+-+- -..+|-...-+--.|+++.---
T Consensus 226 --p~P~~~~~gsRriwsdpig~~witt-----wg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea---- 294 (353)
T COG4257 226 --PQPNALKAGSRRIWSDPIGRAWITT-----WGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEA---- 294 (353)
T ss_pred --cCCCcccccccccccCccCcEEEec-----cCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeecc----
Confidence 223221111 1122346777762 123579999999999987652 2234443333333556666321
Q ss_pred CCCCeEEEEeCCCCceeecCCCCcCCCceeEEEEcCC
Q psy11333 442 SPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVGD 478 (482)
Q Consensus 442 ~~~~~~~~y~~~~~~W~~~~~~~~~r~~~~~~~~~~~ 478 (482)
..+.+.+|||++.+++.+ |.+|-..+....+|+
T Consensus 295 -~agai~rfdpeta~ftv~---p~pr~n~gn~ql~gr 327 (353)
T COG4257 295 -DAGAIGRFDPETARFTVL---PIPRPNSGNIQLDGR 327 (353)
T ss_pred -ccCceeecCcccceEEEe---cCCCCCCCceeccCC
Confidence 135689999999887765 344444444555544
No 110
>PRK05137 tolB translocation protein TolB; Provisional
Probab=92.52 E-value=12 Score=37.09 Aligned_cols=146 Identities=10% Similarity=0.014 Sum_probs=75.8
Q ss_pred ceeEEEeCCCCCeeeccCCCCCCCceeEEEECC-EEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEE
Q psy11333 303 SSVERYDPQSSDWKIVAPMSKRRCGVGVAVLND-LLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVL 381 (482)
Q Consensus 303 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~ 381 (482)
..++.+|+.+.+...+...+......+ ..-+| +|++....++ ...++.+|..++..+++ ...+.... .....-
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~-~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~L-t~~~~~~~-~~~~sp 299 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAPR-FSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRL-TDSPAIDT-SPSYSP 299 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCcE-ECCCCCEEEEEEecCC---CceEEEEECCCCceEEc-cCCCCccC-ceeEcC
Confidence 579999999988877765443222211 12244 5555443332 35789999999888777 33221111 122233
Q ss_pred CCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECC-EEEEEcCCCCCCCCCeEEEEeCCCCceeec
Q psy11333 382 DGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGG-FLYAIGGSDGQSPLNTVERFDPKLNRWTAM 460 (482)
Q Consensus 382 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~ 460 (482)
+|+-.++...... ...++.+|..+.....+..-. .........-+| .|++.....+ ...++.+|+.++....+
T Consensus 300 DG~~i~f~s~~~g--~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~~---~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 300 DGSQIVFESDRSG--SPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTKQGGG---QFSIGVMKPDGSGERIL 373 (435)
T ss_pred CCCEEEEEECCCC--CCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEEEEcCCC---ceEEEEEECCCCceEec
Confidence 4443333322111 247889998877666654321 111111222244 4544432221 24678888766554444
No 111
>KOG0310|consensus
Probab=92.28 E-value=4.1 Score=39.25 Aligned_cols=133 Identities=20% Similarity=0.229 Sum_probs=75.5
Q ss_pred CCcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEEE-C-CEEEEEecCCCCCCCCeEEEEeCCCCcee
Q psy11333 286 RGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVL-N-DLLYAVGGHDGQSYLNSIERYDPQTNQWS 363 (482)
Q Consensus 286 ~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 363 (482)
.+++|++.||+++ .|-.||..+.+ ..+-.+..+..--.+..+ . ..|-..|| +.+-+||..++.=
T Consensus 164 ~~~hivvtGsYDg-----~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgG-------n~vkVWDl~~G~q- 229 (487)
T KOG0310|consen 164 ANDHIVVTGSYDG-----KVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGG-------NSVKVWDLTTGGQ- 229 (487)
T ss_pred CCCeEEEecCCCc-----eEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCC-------CeEEEEEecCCce-
Confidence 4688999999763 46678887773 222333332222233344 3 34555566 5688999886641
Q ss_pred ecCCCCC-CcccceeEEEE-CCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEE-CCEEEEEcCCCC
Q psy11333 364 CDVAPTT-SCRTSVGVAVL-DGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVL-GGFLYAIGGSDG 440 (482)
Q Consensus 364 ~~~~~~~-~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~i~v~GG~~~ 440 (482)
.+ ..+. ....-.++... ++.=.+.||.+++ +-+|| +..|..+-.|..|-.--++++. ++.-.++|+.||
T Consensus 230 ll-~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-----VKVfd--~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 230 LL-TSMFNHNKTVTCLRLASDSTRLLSGSLDRH-----VKVFD--TTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred eh-hhhhcccceEEEEEeecCCceEeecccccc-----eEEEE--ccceEEEEeeecccceeeEEecCCCceEEEecccc
Confidence 12 2222 11111222221 4455667887653 66787 5667777666555554555555 678888888776
No 112
>KOG0310|consensus
Probab=92.03 E-value=12 Score=36.29 Aligned_cols=142 Identities=17% Similarity=0.178 Sum_probs=71.1
Q ss_pred CCcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCc---eeEEEECCEEEEEecCCCCCCCCeEEEEeCCCC-c
Q psy11333 286 RGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCG---VGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTN-Q 361 (482)
Q Consensus 286 ~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~ 361 (482)
.++.+++.|+.. ..+-.+|..+..= ...+....-+ .+....+++|.+.||+++ .+-.||+.+. .
T Consensus 121 ~d~t~l~s~sDd-----~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg-----~vrl~DtR~~~~ 188 (487)
T KOG0310|consen 121 QDNTMLVSGSDD-----KVVKYWDLSTAYV--QAELSGHTDYVRCGDISPANDHIVVTGSYDG-----KVRLWDTRSLTS 188 (487)
T ss_pred cCCeEEEecCCC-----ceEEEEEcCCcEE--EEEecCCcceeEeeccccCCCeEEEecCCCc-----eEEEEEeccCCc
Confidence 478888888743 1234445444442 1122211111 222235889999999986 5888999877 4
Q ss_pred eeecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCC-CCccceEEEEE-CCEEEEEcCCC
Q psy11333 362 WSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMT-TRRLGVAVAVL-GGFLYAIGGSD 439 (482)
Q Consensus 362 W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~-~~~i~v~GG~~ 439 (482)
|..- -.-..|...-...-.+..|...|| +.+-+||..+..=. +..|- .-....++... ++.=.+-||-+
T Consensus 189 ~v~e-lnhg~pVe~vl~lpsgs~iasAgG-------n~vkVWDl~~G~ql-l~~~~~H~KtVTcL~l~s~~~rLlS~sLD 259 (487)
T KOG0310|consen 189 RVVE-LNHGCPVESVLALPSGSLIASAGG-------NSVKVWDLTTGGQL-LTSMFNHNKTVTCLRLASDSTRLLSGSLD 259 (487)
T ss_pred eeEE-ecCCCceeeEEEcCCCCEEEEcCC-------CeEEEEEecCCcee-hhhhhcccceEEEEEeecCCceEeecccc
Confidence 5422 122222221111112334444455 56778887644321 11111 21222222222 45666677766
Q ss_pred CCCCCCeEEEEeCC
Q psy11333 440 GQSPLNTVERFDPK 453 (482)
Q Consensus 440 ~~~~~~~~~~y~~~ 453 (482)
+ .+-+||..
T Consensus 260 ~-----~VKVfd~t 268 (487)
T KOG0310|consen 260 R-----HVKVFDTT 268 (487)
T ss_pred c-----ceEEEEcc
Confidence 3 57888843
No 113
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.65 E-value=5.7 Score=40.39 Aligned_cols=118 Identities=19% Similarity=0.275 Sum_probs=68.3
Q ss_pred eEEEECCEEEEEecCCCCCCCCeEEEEeCCCCc--eeecCCCCCCc--------ccceeEEEECCEEEEEeccCCCcccC
Q psy11333 329 GVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQ--WSCDVAPTTSC--------RTSVGVAVLDGFLYAVGGQDGVQCLN 398 (482)
Q Consensus 329 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~ 398 (482)
+-++.++.||+.... ..++++|..+.+ |+.- ...+.. ....+.++.++++|+... ..
T Consensus 64 tPvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~-~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------dg 130 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY------SRVYALDAKTGKELWKYD-PKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------DA 130 (527)
T ss_pred CCEEECCEEEEECCC------CcEEEEECCCCceeeEec-CCCCcccccccccccccccceEECCEEEEEcC------CC
Confidence 344669999986542 358999998765 8854 222111 112235677888887532 13
Q ss_pred eEEEEeCCCC--ceeecC-CCCCC-ccceEEEEECCEEEEEcCCCCCCCCCeEEEEeCCCCc--eee
Q psy11333 399 HVERYDPKEN--KWSRVA-PMTTR-RLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNR--WTA 459 (482)
Q Consensus 399 ~~~~yd~~~~--~W~~~~-~~~~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~~--W~~ 459 (482)
.+.++|.+|. .|+.-. +.... ....+-++.+++||+-...........+..||.++.+ |+.
T Consensus 131 ~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 6889999866 476532 22211 1223345668888775332211233578899987763 654
No 114
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=91.08 E-value=13 Score=35.50 Aligned_cols=98 Identities=15% Similarity=0.099 Sum_probs=57.9
Q ss_pred CCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCC----CCCc--ccceeEEEECCEE
Q psy11333 312 SSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAP----TTSC--RTSVGVAVLDGFL 385 (482)
Q Consensus 312 ~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~----~~~~--r~~~~~~~~~~~l 385 (482)
.+.|+.+.. .....--++.++|++|++.- ...++.++..-. =.++.+. +..+ ......+...|+|
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdL 259 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDS------IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGEL 259 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcC------CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEE
Confidence 489998864 23335567788999999942 124666664311 1122111 1111 1234567788999
Q ss_pred EEEeccCCC--------------cccCeEEEEeCCCCceeecCCCCC
Q psy11333 386 YAVGGQDGV--------------QCLNHVERYDPKENKWSRVAPMTT 418 (482)
Q Consensus 386 yv~GG~~~~--------------~~~~~~~~yd~~~~~W~~~~~~~~ 418 (482)
+++...-.. ...-.|++.|.++.+|.++..+..
T Consensus 260 LmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd 306 (373)
T PLN03215 260 YIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGD 306 (373)
T ss_pred EEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCC
Confidence 999874211 112245667888999999987753
No 115
>smart00284 OLF Olfactomedin-like domains.
Probab=91.03 E-value=9.6 Score=34.28 Aligned_cols=133 Identities=17% Similarity=0.281 Sum_probs=75.6
Q ss_pred CCEEEEEecCCCCCCCCeEEEEeC----CCCceeecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCc
Q psy11333 334 NDLLYAVGGHDGQSYLNSIERYDP----QTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENK 409 (482)
Q Consensus 334 ~~~iyv~GG~~~~~~~~~~~~yd~----~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~ 409 (482)
++++|+..|.. ...+.++.|.. ...++.+. -.+|.+..+.+.++++|.+|.--.. +..+.+||+.+.+
T Consensus 34 ~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~-~~Lp~~~~GtG~VVYngslYY~~~~-----s~~iiKydL~t~~ 105 (255)
T smart00284 34 KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTD-HPLPHAGQGTGVVVYNGSLYFNKFN-----SHDICRFDLTTET 105 (255)
T ss_pred CceEEEEcccc--CCCcEEEEecCHHHHhccCCceE-EECCCccccccEEEECceEEEEecC-----CccEEEEECCCCc
Confidence 57888887653 12345666643 34444433 3567778888999999999986432 4679999999887
Q ss_pred eeecCCCCCCcc------------ceEEEEECCEEEEEcCCCCCCCCCeEEEEeCCC----CceeecCCCCcCCCceeEE
Q psy11333 410 WSRVAPMTTRRL------------GVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKL----NRWTAMAPMSTRRKHLGCA 473 (482)
Q Consensus 410 W~~~~~~~~~r~------------~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~----~~W~~~~~~~~~r~~~~~~ 473 (482)
=.....+|.+.+ ..-.++-.+-|+|+=........=-+-+.||.+ ++|.. ..+.+..+.+-.
T Consensus 106 v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~k~sa~naFm 183 (255)
T smart00284 106 YQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYNKRSASNAFM 183 (255)
T ss_pred EEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCCcccccccEE
Confidence 654444443221 122344455666663322111111234667754 35665 444444444444
Q ss_pred EEc
Q psy11333 474 VFV 476 (482)
Q Consensus 474 ~~~ 476 (482)
++|
T Consensus 184 vCG 186 (255)
T smart00284 184 ICG 186 (255)
T ss_pred Eee
Confidence 443
No 116
>PRK04043 tolB translocation protein TolB; Provisional
Probab=90.67 E-value=18 Score=35.57 Aligned_cols=149 Identities=9% Similarity=-0.012 Sum_probs=83.8
Q ss_pred ceeEEEeCCCCCeeeccCCCCCCCceeEEEECC-EEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEE
Q psy11333 303 SSVERYDPQSSDWKIVAPMSKRRCGVGVAVLND-LLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVL 381 (482)
Q Consensus 303 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~ 381 (482)
..+|.+|+.+.+=+.+...+... ......-+| +|.+.-..++ ..+++.+|..++.++++ ...+..-......--
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~-~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~L-T~~~~~d~~p~~SPD 287 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGML-VVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQI-TNYPGIDVNGNFVED 287 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcE-EeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEc-ccCCCccCccEECCC
Confidence 48999999888766665422111 111222344 5655443322 35799999999999988 433321111222222
Q ss_pred CCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECC-EEEEEcCCCCCC---CCCeEEEEeCCCCce
Q psy11333 382 DGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGG-FLYAIGGSDGQS---PLNTVERFDPKLNRW 457 (482)
Q Consensus 382 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~i~v~GG~~~~~---~~~~~~~y~~~~~~W 457 (482)
+.+||..-...+ ...++.+|..+.+.+.+..-. .... ...-+| .|.......+.. ....++.+|++++.+
T Consensus 288 G~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g--~~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 288 DKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHG--KNNS-SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCeEeCccCC--CcCc-eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 446666654322 357999999988886665321 1222 223344 444444332111 235799999998888
Q ss_pred eecCC
Q psy11333 458 TAMAP 462 (482)
Q Consensus 458 ~~~~~ 462 (482)
+.+..
T Consensus 362 ~~LT~ 366 (419)
T PRK04043 362 RRLTA 366 (419)
T ss_pred EECCC
Confidence 88754
No 117
>KOG2055|consensus
Probab=90.62 E-value=6 Score=38.02 Aligned_cols=128 Identities=16% Similarity=0.210 Sum_probs=71.1
Q ss_pred EEEeccccCCCCCceeEEEeCCCCCeeeccCCCC--CCCceeE-EEECCEEEEEecCCCCCCCCeEEEEeCCCCceeecC
Q psy11333 290 LFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSK--RRCGVGV-AVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDV 366 (482)
Q Consensus 290 l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~--~~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 366 (482)
..+.+|.. .-.+.||..+.+-.++.++.. .+.-..- +..++.+.++-|..+ -+...-..|+.|-.-
T Consensus 272 ~i~~s~rr-----ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s- 340 (514)
T KOG2055|consen 272 VIFTSGRR-----KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITS- 340 (514)
T ss_pred EEEecccc-----eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhhe-
Confidence 66666642 457899999998877765431 1222222 223555666666543 366667777777422
Q ss_pred CCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCc----eeecCCCCCCccceEEE-EECCEEEEEcCC
Q psy11333 367 APTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENK----WSRVAPMTTRRLGVAVA-VLGGFLYAIGGS 438 (482)
Q Consensus 367 ~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~----W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~ 438 (482)
-.++-.....+....+..||++||. ..||.||+.++. |..-.. ..+.+.+ ..++..+.+|-.
T Consensus 341 ~KieG~v~~~~fsSdsk~l~~~~~~------GeV~v~nl~~~~~~~rf~D~G~----v~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 341 FKIEGVVSDFTFSSDSKELLASGGT------GEVYVWNLRQNSCLHRFVDDGS----VHGTSLCISLNGSYLATGSD 407 (514)
T ss_pred eeeccEEeeEEEecCCcEEEEEcCC------ceEEEEecCCcceEEEEeecCc----cceeeeeecCCCceEEeccC
Confidence 1222222333444445678888875 368999998774 433222 2333333 337776666543
No 118
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=90.50 E-value=3.2 Score=33.04 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=55.4
Q ss_pred EECCEEEEEeccCCCcccCeEEEEeCCCCceeecCC---CCCCccceEEEEECCEEEEEcCCCCCC-CCCeEEEEe-CCC
Q psy11333 380 VLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAP---MTTRRLGVAVAVLGGFLYAIGGSDGQS-PLNTVERFD-PKL 454 (482)
Q Consensus 380 ~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~~~~y~-~~~ 454 (482)
-.+|-+|-..-. .......+.+||..+.+|+.++. ..........+.++|+|-++.-..... ..-++|+.+ ..+
T Consensus 3 cinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 3 CINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred EECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 357888877654 22335789999999999988874 345566777888899998886543321 234677775 456
Q ss_pred Cceeec
Q psy11333 455 NRWTAM 460 (482)
Q Consensus 455 ~~W~~~ 460 (482)
++|+..
T Consensus 82 ~~Wsk~ 87 (129)
T PF08268_consen 82 QEWSKK 87 (129)
T ss_pred ceEEEE
Confidence 789876
No 119
>PRK03629 tolB translocation protein TolB; Provisional
Probab=90.25 E-value=20 Score=35.41 Aligned_cols=147 Identities=12% Similarity=-0.012 Sum_probs=77.4
Q ss_pred ceeEEEeCCCCCeeeccCCCCCCCceeEEEECC-EEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEE
Q psy11333 303 SSVERYDPQSSDWKIVAPMSKRRCGVGVAVLND-LLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVL 381 (482)
Q Consensus 303 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~ 381 (482)
..++.+|..+.+-+.+...+..-... ...-+| +|++....++ ...++.+|..+++.+++ ........ .....-
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~~-~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~l-t~~~~~~~-~~~wSP 296 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGAP-AFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQV-TDGRSNNT-EPTWFP 296 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCCe-EECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEc-cCCCCCcC-ceEECC
Confidence 46889999887766655443322111 111244 5665543222 23689999999988877 33222111 122233
Q ss_pred CCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECCE-EEEEcCCCCCCCCCeEEEEeCCCCceeec
Q psy11333 382 DGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGF-LYAIGGSDGQSPLNTVERFDPKLNRWTAM 460 (482)
Q Consensus 382 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~y~~~~~~W~~~ 460 (482)
+|+-+++....+. ...++.+|+.+..-..+..... ........-+|+ |++.+..++ ...++.+|+.+++++.+
T Consensus 297 DG~~I~f~s~~~g--~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g---~~~I~~~dl~~g~~~~L 370 (429)
T PRK03629 297 DSQNLAYTSDQAG--RPQVYKVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVL 370 (429)
T ss_pred CCCEEEEEeCCCC--CceEEEEECCCCCeEEeecCCC-CccCEEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEe
Confidence 4553333332211 2478888988776655532211 111122223554 444443332 24688999988888776
Q ss_pred C
Q psy11333 461 A 461 (482)
Q Consensus 461 ~ 461 (482)
.
T Consensus 371 t 371 (429)
T PRK03629 371 T 371 (429)
T ss_pred C
Confidence 5
No 120
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=89.59 E-value=19 Score=34.05 Aligned_cols=146 Identities=8% Similarity=0.052 Sum_probs=70.8
Q ss_pred cEEEEeccccCCCCCceeEEEeCCC-CCeeeccCCCCCCCceeEEEE-CC-EEEEEecCCCCCCCCeEEEEeCC-CCcee
Q psy11333 288 EVLFAVGGWCSGDAISSVERYDPQS-SDWKIVAPMSKRRCGVGVAVL-ND-LLYAVGGHDGQSYLNSIERYDPQ-TNQWS 363 (482)
Q Consensus 288 ~~l~~~GG~~~~~~~~~~~~~d~~~-~~W~~~~~~~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~-~~~W~ 363 (482)
.++|+..+.. ..+..||..+ .++..+...+.....+.++.- ++ .||+.+. . ...+..|+.. +++++
T Consensus 2 ~~~y~~~~~~-----~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~-~----~~~i~~~~~~~~g~l~ 71 (330)
T PRK11028 2 QIVYIASPES-----QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR-P----EFRVLSYRIADDGALT 71 (330)
T ss_pred eEEEEEcCCC-----CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEEC-C----CCcEEEEEECCCCceE
Confidence 3577775422 4567777753 567665555443333334332 44 5677543 2 2457777775 45666
Q ss_pred ecCCCCCCcccceeEEEE-CC-EEEEEeccCCCcccCeEEEEeCCCCc--eeecCCCCCCccceEEEEE-CC-EEEEEcC
Q psy11333 364 CDVAPTTSCRTSVGVAVL-DG-FLYAVGGQDGVQCLNHVERYDPKENK--WSRVAPMTTRRLGVAVAVL-GG-FLYAIGG 437 (482)
Q Consensus 364 ~~~~~~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~-~~-~i~v~GG 437 (482)
.+ ...+.+.....++.. ++ .+|+.+ .. .+.+..||..++. .+.+...+.....|.++.. ++ .+|+..-
T Consensus 72 ~~-~~~~~~~~p~~i~~~~~g~~l~v~~-~~----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~ 145 (330)
T PRK11028 72 FA-AESPLPGSPTHISTDHQGRFLFSAS-YN----ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL 145 (330)
T ss_pred Ee-eeecCCCCceEEEECCCCCEEEEEE-cC----CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC
Confidence 54 222222122223322 44 466654 22 2456777775431 1222222222223444333 44 5666543
Q ss_pred CCCCCCCCeEEEEeCCC
Q psy11333 438 SDGQSPLNTVERFDPKL 454 (482)
Q Consensus 438 ~~~~~~~~~~~~y~~~~ 454 (482)
. .+.+.+||..+
T Consensus 146 ~-----~~~v~v~d~~~ 157 (330)
T PRK11028 146 K-----EDRIRLFTLSD 157 (330)
T ss_pred C-----CCEEEEEEECC
Confidence 2 24688888765
No 121
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.46 E-value=15 Score=36.03 Aligned_cols=184 Identities=14% Similarity=0.099 Sum_probs=93.8
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEEE-CCEEEEEecCCCCCC------CCeEEEEeCCC
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVL-NDLLYAVGGHDGQSY------LNSIERYDPQT 359 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~------~~~~~~yd~~~ 359 (482)
+++.++++-..++.-...+..+|..+++... ..++...... ++-. ++..++....+.... ...++++...+
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~-d~i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt 211 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLP-DGIENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGT 211 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEE-EEEEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcC-Ccccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCC
Confidence 4555555543334444578889998885432 1222222211 2333 445555544444323 67899999988
Q ss_pred Ccee--ecCCCCCCccc-cee-EEEECCEEEEEeccCCCcccCeEEEEeCCCC-----ceeecCCCCCCccceEEEEECC
Q psy11333 360 NQWS--CDVAPTTSCRT-SVG-VAVLDGFLYAVGGQDGVQCLNHVERYDPKEN-----KWSRVAPMTTRRLGVAVAVLGG 430 (482)
Q Consensus 360 ~~W~--~~~~~~~~~r~-~~~-~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~-----~W~~~~~~~~~r~~~~~~~~~~ 430 (482)
..-+ .+ -..+.+.. ... ...-+++..++.-..+.. .+.++..|.... .|..+.+ +.+-....+...++
T Consensus 212 ~~~~d~lv-fe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~-~~~~~~~~v~~~~~ 288 (414)
T PF02897_consen 212 PQSEDELV-FEEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSP-REDGVEYYVDHHGD 288 (414)
T ss_dssp -GGG-EEE-EC-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEE-SSSS-EEEEEEETT
T ss_pred ChHhCeeE-EeecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeC-CCCceEEEEEccCC
Confidence 8755 22 11122222 222 234456655554333332 478899998865 7877764 22233344455599
Q ss_pred EEEEEcCCCCCCCCCeEEEEeCCCCc---ee-ecCCCCcCCCceeEEEEcC
Q psy11333 431 FLYAIGGSDGQSPLNTVERFDPKLNR---WT-AMAPMSTRRKHLGCAVFVG 477 (482)
Q Consensus 431 ~i~v~GG~~~~~~~~~~~~y~~~~~~---W~-~~~~~~~~r~~~~~~~~~~ 477 (482)
.+|+....+. ....+..++..... |. .+.+-.......++.++++
T Consensus 289 ~~yi~Tn~~a--~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 337 (414)
T PF02897_consen 289 RLYILTNDDA--PNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD 337 (414)
T ss_dssp EEEEEE-TT---TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT
T ss_pred EEEEeeCCCC--CCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC
Confidence 9999887443 34678888887554 65 4433322223334444443
No 122
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=89.31 E-value=6.7 Score=36.03 Aligned_cols=100 Identities=20% Similarity=0.208 Sum_probs=52.9
Q ss_pred EEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEECC-EEEEEeccCCCcccCeEEEEeCCCCceee-c
Q psy11333 336 LLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDG-FLYAVGGQDGVQCLNHVERYDPKENKWSR-V 413 (482)
Q Consensus 336 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~-~ 413 (482)
.+|+.++.+ ..+.+||+.+++-.........++ .....-++ .+|+.++.+ ..+..||+.+.+... +
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~~~~~--~l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~ 69 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVGQRPR--GITLSKDGKLLYVCASDS-----DTIQVIDLATGEVIGTL 69 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEECCCCCC--ceEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEec
Confidence 577777654 378999998876443311111122 11222244 567776532 468889988776643 2
Q ss_pred CCCCCCccceEEEEE-CC-EEEEEcCCCCCCCCCeEEEEeCCCC
Q psy11333 414 APMTTRRLGVAVAVL-GG-FLYAIGGSDGQSPLNTVERFDPKLN 455 (482)
Q Consensus 414 ~~~~~~r~~~~~~~~-~~-~i~v~GG~~~~~~~~~~~~y~~~~~ 455 (482)
+....+ ..++.. ++ .+|+.++.+ +.+..||+++.
T Consensus 70 ~~~~~~---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~ 105 (300)
T TIGR03866 70 PSGPDP---ELFALHPNGKILYIANEDD-----NLVTVIDIETR 105 (300)
T ss_pred cCCCCc---cEEEECCCCCEEEEEcCCC-----CeEEEEECCCC
Confidence 221111 122222 33 566665433 35777777654
No 123
>PRK00178 tolB translocation protein TolB; Provisional
Probab=88.55 E-value=27 Score=34.50 Aligned_cols=103 Identities=17% Similarity=0.047 Sum_probs=57.5
Q ss_pred CeEEEEeCCCCceeecCCCCCCcccceeEEEECC-EEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEE
Q psy11333 350 NSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDG-FLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVL 428 (482)
Q Consensus 350 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 428 (482)
..++++|+.+++-+.+ ...+.. .......-+| +|++....++ ...++.||..+.++..+..-+..-... ...-
T Consensus 223 ~~l~~~~l~~g~~~~l-~~~~g~-~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~~-~~sp 296 (430)
T PRK00178 223 PRIFVQNLDTGRREQI-TNFEGL-NGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNHPAIDTEP-FWGK 296 (430)
T ss_pred CEEEEEECCCCCEEEc-cCCCCC-cCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccCCCCcCCe-EECC
Confidence 4799999999887776 332211 1112222344 4544432222 257999999998887765432211111 1122
Q ss_pred CC-EEEEEcCCCCCCCCCeEEEEeCCCCceeecC
Q psy11333 429 GG-FLYAIGGSDGQSPLNTVERFDPKLNRWTAMA 461 (482)
Q Consensus 429 ~~-~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~~ 461 (482)
+| +|++.....+ ...++.+|..+.+++.+.
T Consensus 297 Dg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 297 DGRTLYFTSDRGG---KPQIYKVNVNGGRAERVT 327 (430)
T ss_pred CCCEEEEEECCCC---CceEEEEECCCCCEEEee
Confidence 44 5666544333 247888998877776653
No 124
>KOG0289|consensus
Probab=88.12 E-value=17 Score=34.83 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=66.0
Q ss_pred ceeEEEE-CCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEE-EECCEEEEEeccCCCcccCeEEEEe
Q psy11333 327 GVGVAVL-NDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVA-VLDGFLYAVGGQDGVQCLNHVERYD 404 (482)
Q Consensus 327 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~yd 404 (482)
.++++.. ||.|+..|-.+ ..+-+||.+... .+ +..|..-.-.... ..+|--|+.-+.+. ..|.+||
T Consensus 350 ~ts~~fHpDgLifgtgt~d-----~~vkiwdlks~~--~~-a~Fpght~~vk~i~FsENGY~Lat~add----~~V~lwD 417 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-----GVVKIWDLKSQT--NV-AKFPGHTGPVKAISFSENGYWLATAADD----GSVKLWD 417 (506)
T ss_pred eEEeeEcCCceEEeccCCC-----ceEEEEEcCCcc--cc-ccCCCCCCceeEEEeccCceEEEEEecC----CeEEEEE
Confidence 4445554 77777766544 357889998876 34 3333311112222 23344444444332 2388999
Q ss_pred CCCCceeecCCCCCCcc-ceEEEEE--CCEEEEEcCCCCCCCCCeEEEEeCCCCceeecCCCC
Q psy11333 405 PKENKWSRVAPMTTRRL-GVAVAVL--GGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMS 464 (482)
Q Consensus 405 ~~~~~W~~~~~~~~~r~-~~~~~~~--~~~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~~~~~ 464 (482)
+...+ ..+..+.+-. ......+ -|...+++|.+ -.++.|+-++.+|+.+..++
T Consensus 418 LRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~-----l~Vy~~~k~~k~W~~~~~~~ 473 (506)
T KOG0289|consen 418 LRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD-----LQVYICKKKTKSWTEIKELA 473 (506)
T ss_pred ehhhc--ccceeeccccccceeEEEcCCCCeEEeecce-----eEEEEEecccccceeeehhh
Confidence 98665 3343333322 2233333 45777777743 34677777889999986554
No 125
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=88.07 E-value=19 Score=32.14 Aligned_cols=142 Identities=19% Similarity=0.217 Sum_probs=64.2
Q ss_pred cEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCce-eEEEE-CCEEEEEecCCCCCCCCeEEEEeCCCCceeec
Q psy11333 288 EVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGV-GVAVL-NDLLYAVGGHDGQSYLNSIERYDPQTNQWSCD 365 (482)
Q Consensus 288 ~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 365 (482)
+.++++|+. ...+..||..+.+-..... ...... ..... ++..+++|+.+ ..+..||..+++....
T Consensus 21 ~~~l~~~~~-----~g~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~~~~~~~~~~~ 88 (289)
T cd00200 21 GKLLATGSG-----DGTIKVWDLETGELLRTLK--GHTGPVRDVAASADGTYLASGSSD-----KTIRLWDLETGECVRT 88 (289)
T ss_pred CCEEEEeec-----CcEEEEEEeeCCCcEEEEe--cCCcceeEEEECCCCCEEEEEcCC-----CeEEEEEcCcccceEE
Confidence 455555553 1356777776654211111 111111 22222 44466666643 4688999987543222
Q ss_pred CCCCCCcccceeEEEE-CCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEEC-CEEEEEcCCCCCCC
Q psy11333 366 VAPTTSCRTSVGVAVL-DGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLG-GFLYAIGGSDGQSP 443 (482)
Q Consensus 366 ~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~-~~i~v~GG~~~~~~ 443 (482)
.... ...-.++... ++++++.|+.+ ..+..||+.+.+-...-. ........+.... +.+++.|+.+
T Consensus 89 ~~~~--~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~---- 156 (289)
T cd00200 89 LTGH--TSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQD---- 156 (289)
T ss_pred Eecc--CCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCC----
Confidence 0111 1111222222 34666666632 357788887543322211 1111222333333 4555554423
Q ss_pred CCeEEEEeCCC
Q psy11333 444 LNTVERFDPKL 454 (482)
Q Consensus 444 ~~~~~~y~~~~ 454 (482)
+.+.+||..+
T Consensus 157 -~~i~i~d~~~ 166 (289)
T cd00200 157 -GTIKLWDLRT 166 (289)
T ss_pred -CcEEEEEccc
Confidence 3577777653
No 126
>PRK04792 tolB translocation protein TolB; Provisional
Probab=87.68 E-value=32 Score=34.30 Aligned_cols=147 Identities=12% Similarity=-0.010 Sum_probs=75.6
Q ss_pred CceeEEEeCCCCCeeeccCCCCCCCceeEEEECC-EEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEE
Q psy11333 302 ISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLND-LLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAV 380 (482)
Q Consensus 302 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~ 380 (482)
...++..|.....-..+...+.+-.... ..-+| +|+... ... ....++.+|..+++-+.+ ...+.....+ ...
T Consensus 197 ~~~l~i~d~dG~~~~~l~~~~~~~~~p~-wSPDG~~La~~s-~~~--g~~~L~~~dl~tg~~~~l-t~~~g~~~~~-~wS 270 (448)
T PRK04792 197 PYQLMIADYDGYNEQMLLRSPEPLMSPA-WSPDGRKLAYVS-FEN--RKAEIFVQDIYTQVREKV-TSFPGINGAP-RFS 270 (448)
T ss_pred ceEEEEEeCCCCCceEeecCCCcccCce-ECCCCCEEEEEE-ecC--CCcEEEEEECCCCCeEEe-cCCCCCcCCe-eEC
Confidence 4567777876654443332222111111 11244 343332 111 124799999998877666 3333221112 223
Q ss_pred ECC-EEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECC-EEEEEcCCCCCCCCCeEEEEeCCCCcee
Q psy11333 381 LDG-FLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGG-FLYAIGGSDGQSPLNTVERFDPKLNRWT 458 (482)
Q Consensus 381 ~~~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~y~~~~~~W~ 458 (482)
-+| +|++....++ ...++.+|..+.+.+.+..-...- ......-+| .|++....++. ..++.+|..+++++
T Consensus 271 PDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~~~-~~p~wSpDG~~I~f~s~~~g~---~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 271 PDGKKLALVLSKDG---QPEIYVVDIATKALTRITRHRAID-TEPSWHPDGKSLIFTSERGGK---PQIYRVNLASGKVS 343 (448)
T ss_pred CCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccCCCCc-cceEECCCCCEEEEEECCCCC---ceEEEEECCCCCEE
Confidence 344 4655543332 257899999988887765422111 111122244 45555443332 57899998888877
Q ss_pred ecC
Q psy11333 459 AMA 461 (482)
Q Consensus 459 ~~~ 461 (482)
.+.
T Consensus 344 ~Lt 346 (448)
T PRK04792 344 RLT 346 (448)
T ss_pred EEe
Confidence 763
No 127
>KOG2321|consensus
Probab=87.53 E-value=5.7 Score=39.34 Aligned_cols=117 Identities=19% Similarity=0.233 Sum_probs=64.1
Q ss_pred CCCCCCceeEEE--ECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEE--CCEEEEEeccCCCcc
Q psy11333 321 MSKRRCGVGVAV--LNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVL--DGFLYAVGGQDGVQC 396 (482)
Q Consensus 321 ~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~ 396 (482)
+..|+.+..++. ..-.||+.|. -..||++|.+.+.|- .|...--...-++.. -+.|++.||.++
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gs------g~evYRlNLEqGrfL---~P~~~~~~~lN~v~in~~hgLla~Gt~~g--- 197 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQGRFL---NPFETDSGELNVVSINEEHGLLACGTEDG--- 197 (703)
T ss_pred eecCcCCccccccCCCccEEEeec------CcceEEEEccccccc---cccccccccceeeeecCccceEEecccCc---
Confidence 344555555555 3556887764 257999999999984 333222111222222 356888888643
Q ss_pred cCeEEEEeCCCCceee-------cCCCCCCccce--EEEEE-CCEEEEEcCCCCCCCCCeEEEEeCCCC
Q psy11333 397 LNHVERYDPKENKWSR-------VAPMTTRRLGV--AVAVL-GGFLYAIGGSDGQSPLNTVERFDPKLN 455 (482)
Q Consensus 397 ~~~~~~yd~~~~~W~~-------~~~~~~~r~~~--~~~~~-~~~i~v~GG~~~~~~~~~~~~y~~~~~ 455 (482)
.|+.|||.+..-.. +...|..-... ++..+ |+-|-+--|... ..+++||..+.
T Consensus 198 --~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~----G~v~iyDLRa~ 260 (703)
T KOG2321|consen 198 --VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST----GSVLIYDLRAS 260 (703)
T ss_pred --eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC----CcEEEEEcccC
Confidence 68899998654322 12223222222 22233 546666666532 35788887654
No 128
>PTZ00420 coronin; Provisional
Probab=86.96 E-value=39 Score=34.64 Aligned_cols=153 Identities=11% Similarity=0.112 Sum_probs=73.0
Q ss_pred cEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEE-ECCEEEEEecCCCCCCCCeEEEEeCCCCcee-ec
Q psy11333 288 EVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAV-LNDLLYAVGGHDGQSYLNSIERYDPQTNQWS-CD 365 (482)
Q Consensus 288 ~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~ 365 (482)
..+++.||.. ..+..+|..+.+=. ..+..+..-.+++. .+|.+++.|+.+ ..+..||+.+.+=. .+
T Consensus 138 ~~iLaSgS~D-----gtIrIWDl~tg~~~--~~i~~~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 138 YYIMCSSGFD-----SFVNIWDIENEKRA--FQINMPKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQEIASSF 205 (568)
T ss_pred CeEEEEEeCC-----CeEEEEECCCCcEE--EEEecCCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCcEEEEE
Confidence 3444555532 35777888766421 11111111122222 377787777754 46899999876422 11
Q ss_pred CCCCCCcccceeEE----EECCEEEEEeccCCCcccCeEEEEeCCC-CceeecCCCCCCccceEEEEE---CCEEEEEcC
Q psy11333 366 VAPTTSCRTSVGVA----VLDGFLYAVGGQDGVQCLNHVERYDPKE-NKWSRVAPMTTRRLGVAVAVL---GGFLYAIGG 437 (482)
Q Consensus 366 ~~~~~~~r~~~~~~----~~~~~lyv~GG~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~r~~~~~~~~---~~~i~v~GG 437 (482)
......+..-.+. ..++..++.+|.++. ....+..||+.+ .+-...-.+.. ..+..+..+ ++.+|+.|.
T Consensus 206 -~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~-~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 206 -HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN-NMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred -ecccCCceeEEEEeeeEcCCCCEEEEEEcCCC-CccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEE
Confidence 1111111111111 124556666665542 134688899874 22111111111 011111222 477888875
Q ss_pred CCCCCCCCeEEEEeCCCCceeec
Q psy11333 438 SDGQSPLNTVERFDPKLNRWTAM 460 (482)
Q Consensus 438 ~~~~~~~~~~~~y~~~~~~W~~~ 460 (482)
.+ ..+..|+...+.-..+
T Consensus 283 GD-----~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 283 GD-----GNCRYYQHSLGSIRKV 300 (568)
T ss_pred CC-----CeEEEEEccCCcEEee
Confidence 44 4688888876643333
No 129
>KOG0511|consensus
Probab=86.69 E-value=0.17 Score=46.74 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=54.6
Q ss_pred eeEEEEeC-CeEEeceeEEeeccCHHHHHHhcCCCCcCccceEEEccCCHHHHHHHHHHhhcCeeeeccccHhhHHHHhc
Q psy11333 38 CDVVLNVG-ARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAAC 116 (482)
Q Consensus 38 ~Dv~i~~~-~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ll~~a~ 116 (482)
.|+++... |+.|.+||..|+++|.+|..-+..-+ .....|.-..+-+.+|+.++++.|-..-.+-.+.-.+++.+..
T Consensus 150 ~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~v~~~~f~~flk~lyl~~na~~~~qynallsi~~ 227 (516)
T KOG0511|consen 150 HDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHRVILSAFSPFLKQLYLNTNAEWKDQYNALLSIEV 227 (516)
T ss_pred cchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhhhhHhhhhHHHHHHHHhhhhhhhhHHHHHHhhhh
Confidence 46666654 77799999999999877754332111 1222344455677889999999997532333344466777777
Q ss_pred ccChhhHHH
Q psy11333 117 LLQLVEIQD 125 (482)
Q Consensus 117 ~~~~~~L~~ 125 (482)
+|++..|..
T Consensus 228 kF~~e~l~~ 236 (516)
T KOG0511|consen 228 KFSKEKLSL 236 (516)
T ss_pred hccHHHhHH
Confidence 776665543
No 130
>KOG0316|consensus
Probab=86.63 E-value=22 Score=31.31 Aligned_cols=104 Identities=19% Similarity=0.295 Sum_probs=71.1
Q ss_pred EECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccc---eeEEEEC--CEEEEEeccCCCcccCeEEEEeCC
Q psy11333 332 VLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTS---VGVAVLD--GFLYAVGGQDGVQCLNHVERYDPK 406 (482)
Q Consensus 332 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~---~~~~~~~--~~lyv~GG~~~~~~~~~~~~yd~~ 406 (482)
+.++.=+..||-+ +.++.||..|++--+. -|.+ .-++.++ -.+.+.|+++ .++.+||-.
T Consensus 68 s~Dnskf~s~GgD-----k~v~vwDV~TGkv~Rr------~rgH~aqVNtV~fNeesSVv~SgsfD-----~s~r~wDCR 131 (307)
T KOG0316|consen 68 SSDNSKFASCGGD-----KAVQVWDVNTGKVDRR------FRGHLAQVNTVRFNEESSVVASGSFD-----SSVRLWDCR 131 (307)
T ss_pred cccccccccCCCC-----ceEEEEEcccCeeeee------cccccceeeEEEecCcceEEEecccc-----ceeEEEEcc
Confidence 3456555555533 5799999999873222 1211 1233344 3577778764 468899999
Q ss_pred CCceeecCCCCCCccceEEEEECCEEEEEcCCCCCCCCCeEEEEeCCCCc
Q psy11333 407 ENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNR 456 (482)
Q Consensus 407 ~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~~ 456 (482)
.+.-+.+.-+...+.+-..+.+.+...+.|-.+| ++..||....+
T Consensus 132 S~s~ePiQildea~D~V~Si~v~~heIvaGS~DG-----tvRtydiR~G~ 176 (307)
T KOG0316|consen 132 SRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG-----TVRTYDIRKGT 176 (307)
T ss_pred cCCCCccchhhhhcCceeEEEecccEEEeeccCC-----cEEEEEeecce
Confidence 9888888888888888888999998888876664 57788876554
No 131
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=86.61 E-value=32 Score=33.21 Aligned_cols=152 Identities=15% Similarity=0.223 Sum_probs=86.5
Q ss_pred CCCCcEEEEeccccCCCCCceeEEEeCCCCC--eeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCC-
Q psy11333 284 SRRGEVLFAVGGWCSGDAISSVERYDPQSSD--WKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTN- 360 (482)
Q Consensus 284 ~~~~~~l~~~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~- 360 (482)
+..++++|+... ++ .++.+|+.+.+ |+.....-...........+|+||+-.. ++ .++++|..+.
T Consensus 65 ~~~dg~v~~~~~--~G----~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~-~g-----~~y~ld~~~G~ 132 (370)
T COG1520 65 ADGDGTVYVGTR--DG----NIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSW-DG-----KLYALDASTGT 132 (370)
T ss_pred EeeCCeEEEecC--CC----cEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecc-cc-----eEEEEECCCCc
Confidence 456788888621 11 78999999987 8643221011111222233788776443 32 6899999644
Q ss_pred -ceeecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCC--CceeecCCC-CCCccceEEEEECCEEEEEc
Q psy11333 361 -QWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKE--NKWSRVAPM-TTRRLGVAVAVLGGFLYAIG 436 (482)
Q Consensus 361 -~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~--~~W~~~~~~-~~~r~~~~~~~~~~~i~v~G 436 (482)
.|+.-.+. . ++...+.++.++.+|+... ...++++|..+ ..|+.-.+. ...+.....+..++.+|+-.
T Consensus 133 ~~W~~~~~~-~-~~~~~~~v~~~~~v~~~s~------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~ 204 (370)
T COG1520 133 LVWSRNVGG-S-PYYASPPVVGDGTVYVGTD------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGS 204 (370)
T ss_pred EEEEEecCC-C-eEEecCcEEcCcEEEEecC------CCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEec
Confidence 59866232 2 4444555666777776631 24577777774 468743332 22333333335567777764
Q ss_pred CCCCCCCCCeEEEEeCCCC--ceee
Q psy11333 437 GSDGQSPLNTVERFDPKLN--RWTA 459 (482)
Q Consensus 437 G~~~~~~~~~~~~y~~~~~--~W~~ 459 (482)
.. . ...++.+|+.+. .|+.
T Consensus 205 ~~---~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 205 DG---Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred CC---C-cceEEEEEccCCcEeeee
Confidence 32 1 236889998654 5874
No 132
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=86.53 E-value=34 Score=33.49 Aligned_cols=149 Identities=11% Similarity=-0.031 Sum_probs=74.3
Q ss_pred CCceeEEEeCCCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEE
Q psy11333 301 AISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAV 380 (482)
Q Consensus 301 ~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~ 380 (482)
....++..|.....=..+.....+- ......-+++..++....+. ...+++||..+++.+.+ ...+......+ ..
T Consensus 168 ~~~~l~~~d~~g~~~~~l~~~~~~~-~~p~~Spdg~~la~~~~~~~--~~~i~v~d~~~g~~~~~-~~~~~~~~~~~-~s 242 (417)
T TIGR02800 168 RRYELQVADYDGANPQTITRSREPI-LSPAWSPDGQKLAYVSFESG--KPEIYVQDLATGQREKV-ASFPGMNGAPA-FS 242 (417)
T ss_pred CcceEEEEcCCCCCCEEeecCCCce-ecccCCCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEe-ecCCCCccceE-EC
Confidence 3456777776544322222211111 11111224444344433221 25799999998876666 33332222222 22
Q ss_pred ECC-EEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECC-EEEEEcCCCCCCCCCeEEEEeCCCCcee
Q psy11333 381 LDG-FLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGG-FLYAIGGSDGQSPLNTVERFDPKLNRWT 458 (482)
Q Consensus 381 ~~~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~y~~~~~~W~ 458 (482)
-+| .|++....++ ...++.+|+.+.....+...+...... ...-+| +|++.....+. ..++.+|..+.++.
T Consensus 243 pDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~dg~~l~~~s~~~g~---~~iy~~d~~~~~~~ 315 (417)
T TIGR02800 243 PDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGPGIDTEP-SWSPDGKSIAFTSDRGGS---PQIYMMDADGGEVR 315 (417)
T ss_pred CCCCEEEEEECCCC---CccEEEEECCCCCEEECCCCCCCCCCE-EECCCCCEEEEEECCCCC---ceEEEEECCCCCEE
Confidence 344 5665543322 257899999988777765433211111 112244 45555443322 47888998877776
Q ss_pred ecC
Q psy11333 459 AMA 461 (482)
Q Consensus 459 ~~~ 461 (482)
.+.
T Consensus 316 ~l~ 318 (417)
T TIGR02800 316 RLT 318 (417)
T ss_pred Eee
Confidence 653
No 133
>PRK05137 tolB translocation protein TolB; Provisional
Probab=86.30 E-value=37 Score=33.65 Aligned_cols=146 Identities=10% Similarity=-0.025 Sum_probs=72.7
Q ss_pred CceeEEEeCCCCCeeeccCCCCCCCceeEEEECCE-EEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEE
Q psy11333 302 ISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDL-LYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAV 380 (482)
Q Consensus 302 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~ 380 (482)
...++..|.....=..+..-..+-. .-...-+|+ |+... ... ....++.+|+.+++.+.+ ...+...... ...
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~-~p~wSpDG~~lay~s-~~~--g~~~i~~~dl~~g~~~~l-~~~~g~~~~~-~~S 254 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVL-TPRFSPNRQEITYMS-YAN--GRPRVYLLDLETGQRELV-GNFPGMTFAP-RFS 254 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeE-eeEECCCCCEEEEEE-ecC--CCCEEEEEECCCCcEEEe-ecCCCcccCc-EEC
Confidence 5678888886554333332111111 111112444 43332 211 125799999999988777 4333222222 223
Q ss_pred ECC-EEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECC-EEEEEcCCCCCCCCCeEEEEeCCCCcee
Q psy11333 381 LDG-FLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGG-FLYAIGGSDGQSPLNTVERFDPKLNRWT 458 (482)
Q Consensus 381 ~~~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~y~~~~~~W~ 458 (482)
-+| +|++....++ ...++.+|..+.....+...+..- ......-+| +|++....++ ...++++|..+.+.+
T Consensus 255 PDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~~~~~-~~~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~ 327 (435)
T PRK05137 255 PDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDSPAID-TSPSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPR 327 (435)
T ss_pred CCCCEEEEEEecCC---CceEEEEECCCCceEEccCCCCcc-CceeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeE
Confidence 345 4544443322 257899999888776665433211 111122244 4544433322 246888887766555
Q ss_pred ec
Q psy11333 459 AM 460 (482)
Q Consensus 459 ~~ 460 (482)
.+
T Consensus 328 ~l 329 (435)
T PRK05137 328 RI 329 (435)
T ss_pred Ee
Confidence 54
No 134
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=85.94 E-value=16 Score=31.56 Aligned_cols=101 Identities=18% Similarity=0.270 Sum_probs=55.6
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCCCe---eeccCCCCCC--Cce-eEEEE--CCEEEEEecCCCCCCCCeEEEEeCC
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSSDW---KIVAPMSKRR--CGV-GVAVL--NDLLYAVGGHDGQSYLNSIERYDPQ 358 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~~W---~~~~~~~~~~--~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 358 (482)
++++|++-| +..|+||..+..+ ..+.....+. ... ++... ++++|++.| +..++||..
T Consensus 62 ~~~~yfFkg-------~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~ 127 (194)
T cd00094 62 TGKIYFFKG-------DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEK 127 (194)
T ss_pred CCEEEEECC-------CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCC
Confidence 378999977 4678888664222 1111111111 112 22233 689999988 457888876
Q ss_pred CCceeecC--------CCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCc
Q psy11333 359 TNQWSCDV--------APTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENK 409 (482)
Q Consensus 359 ~~~W~~~~--------~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~ 409 (482)
+++..... +.+|.. -..+...-++++|.+-| +..++||..+.+
T Consensus 128 ~~~v~~~yP~~i~~~w~g~p~~-idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 128 TQKMDPGYPKLIETDFPGVPDK-VDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred CccccCCCCcchhhcCCCcCCC-cceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 55432110 111211 12222233489999977 578999988765
No 135
>KOG0649|consensus
Probab=85.91 E-value=24 Score=31.18 Aligned_cols=111 Identities=17% Similarity=0.215 Sum_probs=63.4
Q ss_pred CeeeccCCCC-----CCCceeEEE-ECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEE--ECCEE
Q psy11333 314 DWKIVAPMSK-----RRCGVGVAV-LNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAV--LDGFL 385 (482)
Q Consensus 314 ~W~~~~~~~~-----~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~--~~~~l 385 (482)
.|+..+|+.. |-...-... -.|.|+..||- ..++++|.++++.++. --....+-|+++. .++.
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G~i~r~--~rGHtDYvH~vv~R~~~~q- 170 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDGRIQRE--YRGHTDYVHSVVGRNANGQ- 170 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC------eEEEEEEecCCEEEEE--EcCCcceeeeeeecccCcc-
Confidence 5766665433 333322222 47888888872 3689999999998766 1122334455554 2344
Q ss_pred EEEeccCCCcccCeEEEEeCCCCceeecCC------CCCCccce--EEEEECCEEEEEcCC
Q psy11333 386 YAVGGQDGVQCLNHVERYDPKENKWSRVAP------MTTRRLGV--AVAVLGGFLYAIGGS 438 (482)
Q Consensus 386 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~------~~~~r~~~--~~~~~~~~i~v~GG~ 438 (482)
.+.||.++ ++-.||.+|.+-..+-. ...|-.+- ++...+..-.++||-
T Consensus 171 ilsG~EDG-----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG 226 (325)
T KOG0649|consen 171 ILSGAEDG-----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG 226 (325)
T ss_pred eeecCCCc-----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC
Confidence 34666654 46778888887766531 22222222 444445556666663
No 136
>KOG1332|consensus
Probab=85.77 E-value=9.7 Score=33.56 Aligned_cols=104 Identities=15% Similarity=0.346 Sum_probs=61.2
Q ss_pred EEEEEecCCCCCCCCeEEEEeCCCCceeec---------------CCCCCCcccceeEEEECCEEEEEeccCCCcccCeE
Q psy11333 336 LLYAVGGHDGQSYLNSIERYDPQTNQWSCD---------------VAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHV 400 (482)
Q Consensus 336 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---------------~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 400 (482)
+=++.||.+. .|-+|+...++|..- .|....++...+.+..+|++++.-
T Consensus 176 krlvSgGcDn-----~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt----------- 239 (299)
T KOG1332|consen 176 KRLVSGGCDN-----LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT----------- 239 (299)
T ss_pred ceeeccCCcc-----ceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE-----------
Confidence 4477788763 466666666676532 133345566666666677666552
Q ss_pred EEEeCCCCceeecC--CCCCCccceEEEEECCEEEEEcCCCCCCCCCeEEEEeCCC-CceeecCCC
Q psy11333 401 ERYDPKENKWSRVA--PMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKL-NRWTAMAPM 463 (482)
Q Consensus 401 ~~yd~~~~~W~~~~--~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~-~~W~~~~~~ 463 (482)
-+-+...|+... +.|.+....+-...++-|-|-||. +.+.++-+.. .+|..++..
T Consensus 240 --~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd------Nkvtlwke~~~Gkw~~v~~~ 297 (299)
T KOG1332|consen 240 --KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD------NKVTLWKENVDGKWEEVGEV 297 (299)
T ss_pred --ecCccCcccccccccCCcceEEEEEeccccEEEEecCC------cEEEEEEeCCCCcEEEcccc
Confidence 222345675533 455555555555556666666664 4677777764 499998753
No 137
>KOG1036|consensus
Probab=85.68 E-value=28 Score=31.79 Aligned_cols=153 Identities=18% Similarity=0.215 Sum_probs=81.2
Q ss_pred eeEEEeCCCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEECC
Q psy11333 304 SVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDG 383 (482)
Q Consensus 304 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~ 383 (482)
++-.||...+.-.. .+.....--..+..+..=.+.||.++ .+-.||..+..=..+ ..-..+.....-. ...
T Consensus 36 slrlYdv~~~~l~~--~~~~~~plL~c~F~d~~~~~~G~~dg-----~vr~~Dln~~~~~~i-gth~~~i~ci~~~-~~~ 106 (323)
T KOG1036|consen 36 SLRLYDVPANSLKL--KFKHGAPLLDCAFADESTIVTGGLDG-----QVRRYDLNTGNEDQI-GTHDEGIRCIEYS-YEV 106 (323)
T ss_pred cEEEEeccchhhhh--heecCCceeeeeccCCceEEEeccCc-----eEEEEEecCCcceee-ccCCCceEEEEee-ccC
Confidence 45667777763221 11111111223334555555677664 688999999886666 3222222111111 223
Q ss_pred EEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECCEEEEEcCCCCCCCCCeEEEEeCCCCc-------
Q psy11333 384 FLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNR------- 456 (482)
Q Consensus 384 ~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~~------- 456 (482)
...+.||++ .++..||+.+.. .+.....+...+++-+.+++| |+|+.+ ..+..||..+..
T Consensus 107 ~~vIsgsWD-----~~ik~wD~R~~~--~~~~~d~~kkVy~~~v~g~~L-vVg~~~-----r~v~iyDLRn~~~~~q~re 173 (323)
T KOG1036|consen 107 GCVISGSWD-----KTIKFWDPRNKV--VVGTFDQGKKVYCMDVSGNRL-VVGTSD-----RKVLIYDLRNLDEPFQRRE 173 (323)
T ss_pred CeEEEcccC-----ccEEEEeccccc--cccccccCceEEEEeccCCEE-EEeecC-----ceEEEEEcccccchhhhcc
Confidence 346677775 468889987622 122333444555555555554 555543 468888876432
Q ss_pred ------eeecCCCCcCCCceeEEEEcCCC
Q psy11333 457 ------WTAMAPMSTRRKHLGCAVFVGDN 479 (482)
Q Consensus 457 ------W~~~~~~~~~r~~~~~~~~~~~~ 479 (482)
=..++..| .+.++.+..++|+.
T Consensus 174 S~lkyqtR~v~~~p-n~eGy~~sSieGRV 201 (323)
T KOG1036|consen 174 SSLKYQTRCVALVP-NGEGYVVSSIEGRV 201 (323)
T ss_pred ccceeEEEEEEEec-CCCceEEEeecceE
Confidence 12233445 66677777777764
No 138
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=85.12 E-value=70 Score=35.85 Aligned_cols=107 Identities=19% Similarity=0.274 Sum_probs=61.8
Q ss_pred CEEEEEecCCCCCCCCeEEEEeCCCCceeecC--CCC-CC--------------cc--cceeEE-EECCEEEEEeccCCC
Q psy11333 335 DLLYAVGGHDGQSYLNSIERYDPQTNQWSCDV--APT-TS--------------CR--TSVGVA-VLDGFLYAVGGQDGV 394 (482)
Q Consensus 335 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~--~~~-~~--------------~r--~~~~~~-~~~~~lyv~GG~~~~ 394 (482)
+.|||....+ +.+.+||+.++..+.+. .+. +. .. ...+++ .-+|.+||....
T Consensus 752 ~~LYVADs~n-----~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~--- 823 (1057)
T PLN02919 752 KELYIADSES-----SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY--- 823 (1057)
T ss_pred CEEEEEECCC-----CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC---
Confidence 4599886533 57999999876533220 000 00 00 112333 235789998653
Q ss_pred cccCeEEEEeCCCCceeecCCCCCC-----------c-cceEEEE-ECCEEEEEcCCCCCCCCCeEEEEeCCCCc
Q psy11333 395 QCLNHVERYDPKENKWSRVAPMTTR-----------R-LGVAVAV-LGGFLYAIGGSDGQSPLNTVERFDPKLNR 456 (482)
Q Consensus 395 ~~~~~~~~yd~~~~~W~~~~~~~~~-----------r-~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~y~~~~~~ 456 (482)
.+.+.+||+.+.....+.....+ . .-.++++ -+|++||.-..+ +.|.++|..+++
T Consensus 824 --N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N-----n~Irvid~~~~~ 891 (1057)
T PLN02919 824 --NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN-----SLIRYLDLNKGE 891 (1057)
T ss_pred --CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC-----CEEEEEECCCCc
Confidence 35799999988877765532210 0 1122333 277899986654 478899987764
No 139
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=84.58 E-value=43 Score=32.87 Aligned_cols=148 Identities=17% Similarity=0.166 Sum_probs=82.5
Q ss_pred CceeEEEeCCCC-----CeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCc---eeecCCCCCCcc
Q psy11333 302 ISSVERYDPQSS-----DWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQ---WSCDVAPTTSCR 373 (482)
Q Consensus 302 ~~~~~~~d~~~~-----~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~---W~~~~~~~~~~r 373 (482)
.+.++.+|.... .|..+.+ +.....+.+...++.+|+.-..+. ....+..++..+.. |..+..+.....
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~-~~~~~~~~v~~~~~~~yi~Tn~~a--~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 327 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSP-REDGVEYYVDHHGDRLYILTNDDA--PNGRLVAVDLADPSPAEWWTVLIPEDEDV 327 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEE-SSSS-EEEEEEETTEEEEEE-TT---TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred CCeEEEEeccccCCCcCCcEEEeC-CCCceEEEEEccCCEEEEeeCCCC--CCcEEEEecccccccccceeEEcCCCCce
Confidence 378899999875 7776654 222233344456999998876332 33578888888775 663313333333
Q ss_pred cceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecC-CCCCCccceEEEEE---CCE-EEEEcCCCCCCCCCeEE
Q psy11333 374 TSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVA-PMTTRRLGVAVAVL---GGF-LYAIGGSDGQSPLNTVE 448 (482)
Q Consensus 374 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~~---~~~-i~v~GG~~~~~~~~~~~ 448 (482)
.--.+...++.|++..=.++ ...+..||+. ..|.... ++|. ......... .+. .|.+.+.... ..++
T Consensus 328 ~l~~~~~~~~~Lvl~~~~~~---~~~l~v~~~~-~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P---~~~y 399 (414)
T PF02897_consen 328 SLEDVSLFKDYLVLSYRENG---SSRLRVYDLD-DGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTP---PTVY 399 (414)
T ss_dssp EEEEEEEETTEEEEEEEETT---EEEEEEEETT--TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEE---EEEE
T ss_pred eEEEEEEECCEEEEEEEECC---ccEEEEEECC-CCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCC---CEEE
Confidence 44556667888887754433 3578889987 2333322 2332 111111111 223 4444554322 4799
Q ss_pred EEeCCCCceeec
Q psy11333 449 RFDPKLNRWTAM 460 (482)
Q Consensus 449 ~y~~~~~~W~~~ 460 (482)
.||+.+++.+.+
T Consensus 400 ~~d~~t~~~~~~ 411 (414)
T PF02897_consen 400 RYDLATGELTLL 411 (414)
T ss_dssp EEETTTTCEEEE
T ss_pred EEECCCCCEEEE
Confidence 999999987664
No 140
>PRK13684 Ycf48-like protein; Provisional
Probab=84.40 E-value=38 Score=32.17 Aligned_cols=152 Identities=16% Similarity=0.227 Sum_probs=77.2
Q ss_pred eeEEEeCCCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEE-EeCCCCceeecCCCCCCcccceeEEE-E
Q psy11333 304 SVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIER-YDPQTNQWSCDVAPTTSCRTSVGVAV-L 381 (482)
Q Consensus 304 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~-yd~~~~~W~~~~~~~~~~r~~~~~~~-~ 381 (482)
.+++=+-.-++|+.+.... ...-+.+....+..|+..|..+ .++. .|....+|+.+ .. +..+...+++. -
T Consensus 153 ~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G-----~i~~s~~~gg~tW~~~-~~-~~~~~l~~i~~~~ 224 (334)
T PRK13684 153 AIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRG-----NFYSTWEPGQTAWTPH-QR-NSSRRLQSMGFQP 224 (334)
T ss_pred eEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCc-----eEEEEcCCCCCeEEEe-eC-CCcccceeeeEcC
Confidence 4666677778998876533 2233444444444444444332 2333 24455679988 33 33344444443 4
Q ss_pred CCEEEEEeccCCCcccCeEEEEe--CCCCceeecCCC-CCCcc-ceEEEEE-CCEEEEEcCCCCCCCCCeEEEEeCCCCc
Q psy11333 382 DGFLYAVGGQDGVQCLNHVERYD--PKENKWSRVAPM-TTRRL-GVAVAVL-GGFLYAIGGSDGQSPLNTVERFDPKLNR 456 (482)
Q Consensus 382 ~~~lyv~GG~~~~~~~~~~~~yd--~~~~~W~~~~~~-~~~r~-~~~~~~~-~~~i~v~GG~~~~~~~~~~~~y~~~~~~ 456 (482)
+++++++|.. + ...+. -.-..|+.+... +.... .++++.. ++.+|+.|+. ..++.-.....+
T Consensus 225 ~g~~~~vg~~-G------~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~------G~v~~S~d~G~t 291 (334)
T PRK13684 225 DGNLWMLARG-G------QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGN------GTLLVSKDGGKT 291 (334)
T ss_pred CCCEEEEecC-C------EEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCC------CeEEEeCCCCCC
Confidence 6888888643 2 22231 123489865422 11112 2333333 6678888764 234433344568
Q ss_pred eeecCC-CCcCCCceeEEEEc
Q psy11333 457 WTAMAP-MSTRRKHLGCAVFV 476 (482)
Q Consensus 457 W~~~~~-~~~~r~~~~~~~~~ 476 (482)
|+.+.. -..+.....++..+
T Consensus 292 W~~~~~~~~~~~~~~~~~~~~ 312 (334)
T PRK13684 292 WEKDPVGEEVPSNFYKIVFLD 312 (334)
T ss_pred CeECCcCCCCCcceEEEEEeC
Confidence 998753 22233444444443
No 141
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=84.31 E-value=30 Score=30.82 Aligned_cols=133 Identities=17% Similarity=0.169 Sum_probs=59.9
Q ss_pred ceeEEEeCCCCCeeeccCCCCCC-CceeEEEE-CCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEE
Q psy11333 303 SSVERYDPQSSDWKIVAPMSKRR-CGVGVAVL-NDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAV 380 (482)
Q Consensus 303 ~~~~~~d~~~~~W~~~~~~~~~~-~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~ 380 (482)
..+..||..+.+... .+.... .-.++... ++.+++.|+.+ ..+..||+.+.+-...... ....-.++..
T Consensus 73 ~~i~i~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~--~~~~i~~~~~ 143 (289)
T cd00200 73 KTIRLWDLETGECVR--TLTGHTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLTTLRG--HTDWVNSVAF 143 (289)
T ss_pred CeEEEEEcCcccceE--EEeccCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEEEecc--CCCcEEEEEE
Confidence 467888887753221 111111 11222222 34666666533 3688999986553322021 1111122333
Q ss_pred EC-CEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEE-CCEEEEEcCCCCCCCCCeEEEEeCCCC
Q psy11333 381 LD-GFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVL-GGFLYAIGGSDGQSPLNTVERFDPKLN 455 (482)
Q Consensus 381 ~~-~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~y~~~~~ 455 (482)
.. +.+++.|+.+ ..+..||..+.+-...-... ......+... ++..+++|+.+ ..+.+||..+.
T Consensus 144 ~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~ 209 (289)
T cd00200 144 SPDGTFVASSSQD-----GTIKLWDLRTGKCVATLTGH-TGEVNSVAFSPDGEKLLSSSSD-----GTIKLWDLSTG 209 (289)
T ss_pred cCcCCEEEEEcCC-----CcEEEEEccccccceeEecC-ccccceEEECCCcCEEEEecCC-----CcEEEEECCCC
Confidence 33 4555555422 35778887643321111111 1112222222 44455555543 35778887643
No 142
>PLN00181 protein SPA1-RELATED; Provisional
Probab=84.23 E-value=66 Score=34.82 Aligned_cols=98 Identities=19% Similarity=0.220 Sum_probs=52.6
Q ss_pred CCEEEEEecCCCCCCCCeEEEEeCCCCcee-ecCCCCCCcccceeEEE---ECCEEEEEeccCCCcccCeEEEEeCCCCc
Q psy11333 334 NDLLYAVGGHDGQSYLNSIERYDPQTNQWS-CDVAPTTSCRTSVGVAV---LDGFLYAVGGQDGVQCLNHVERYDPKENK 409 (482)
Q Consensus 334 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~yd~~~~~ 409 (482)
++.+++.||.++ .+..||..+..-. .+ .. ......+. .++..+++|+.++ .+..||..+.+
T Consensus 587 ~~~~L~Sgs~Dg-----~v~iWd~~~~~~~~~~-~~----~~~v~~v~~~~~~g~~latgs~dg-----~I~iwD~~~~~ 651 (793)
T PLN00181 587 DPTLLASGSDDG-----SVKLWSINQGVSIGTI-KT----KANICCVQFPSESGRSLAFGSADH-----KVYYYDLRNPK 651 (793)
T ss_pred CCCEEEEEcCCC-----EEEEEECCCCcEEEEE-ec----CCCeEEEEEeCCCCCEEEEEeCCC-----eEEEEECCCCC
Confidence 567778887653 6889998765422 22 11 11111222 2577888887543 58889986542
Q ss_pred --eeecCCCCCCccceEEEEECCEEEEEcCCCCCCCCCeEEEEeCC
Q psy11333 410 --WSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPK 453 (482)
Q Consensus 410 --W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~ 453 (482)
...+.. .......+...++..++.|+.+ +.+.+||..
T Consensus 652 ~~~~~~~~--h~~~V~~v~f~~~~~lvs~s~D-----~~ikiWd~~ 690 (793)
T PLN00181 652 LPLCTMIG--HSKTVSYVRFVDSSTLVSSSTD-----NTLKLWDLS 690 (793)
T ss_pred ccceEecC--CCCCEEEEEEeCCCEEEEEECC-----CEEEEEeCC
Confidence 212211 1111222333466667777765 356777764
No 143
>PRK02889 tolB translocation protein TolB; Provisional
Probab=83.14 E-value=50 Score=32.60 Aligned_cols=145 Identities=16% Similarity=0.100 Sum_probs=74.2
Q ss_pred ceeEEEeCCCCCeeeccCCCCCCCceeEEEECC-EEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEE
Q psy11333 303 SSVERYDPQSSDWKIVAPMSKRRCGVGVAVLND-LLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVL 381 (482)
Q Consensus 303 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~ 381 (482)
..++.+|..+.+=..+...+.... ..+..-++ +|++....++ ...++.+|..++..+++ ......... ....-
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~l-t~~~~~~~~-~~wSp 293 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRL-TQSSGIDTE-PFFSP 293 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCC---CceEEEEECCCCCcEEC-CCCCCCCcC-eEEcC
Confidence 468999998886555544332111 11112244 5655444332 25789999988877766 322211112 22333
Q ss_pred CCE-EEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceE-EEEECC-EEEEEcCCCCCCCCCeEEEEeCCCCcee
Q psy11333 382 DGF-LYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVA-VAVLGG-FLYAIGGSDGQSPLNTVERFDPKLNRWT 458 (482)
Q Consensus 382 ~~~-lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~-~~~~~~-~i~v~GG~~~~~~~~~~~~y~~~~~~W~ 458 (482)
+|+ |+......+ ...++.+|..+...+.+..- +..... ...-+| .|+...+..+ ...++++|..+++..
T Consensus 294 DG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~s~~~g---~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 294 DGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFT--GSYNTSPRISPDGKLLAYISRVGG---AFKLYVQDLATGQVT 365 (427)
T ss_pred CCCEEEEEecCCC---CcEEEEEECCCCceEEEecC--CCCcCceEECCCCCEEEEEEccCC---cEEEEEEECCCCCeE
Confidence 554 444332222 24688888777766655421 111111 222244 4554443322 136888998877766
Q ss_pred ecC
Q psy11333 459 AMA 461 (482)
Q Consensus 459 ~~~ 461 (482)
.+.
T Consensus 366 ~lt 368 (427)
T PRK02889 366 ALT 368 (427)
T ss_pred Ecc
Confidence 553
No 144
>KOG1036|consensus
Probab=83.02 E-value=38 Score=31.04 Aligned_cols=92 Identities=18% Similarity=0.212 Sum_probs=51.9
Q ss_pred ceeEEEeCCCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEEC
Q psy11333 303 SSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLD 382 (482)
Q Consensus 303 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~ 382 (482)
..+-.||..+..=..++.-..+.....-. ......|.||++ +++.+||+....=. .....+-.-+++.+.+
T Consensus 75 g~vr~~Dln~~~~~~igth~~~i~ci~~~-~~~~~vIsgsWD-----~~ik~wD~R~~~~~---~~~d~~kkVy~~~v~g 145 (323)
T KOG1036|consen 75 GQVRRYDLNTGNEDQIGTHDEGIRCIEYS-YEVGCVISGSWD-----KTIKFWDPRNKVVV---GTFDQGKKVYCMDVSG 145 (323)
T ss_pred ceEEEEEecCCcceeeccCCCceEEEEee-ccCCeEEEcccC-----ccEEEEeccccccc---cccccCceEEEEeccC
Confidence 36888999988766655432222111111 234456778887 47999999873211 1122222345555555
Q ss_pred CEEEEEeccCCCcccCeEEEEeCCCCc
Q psy11333 383 GFLYAVGGQDGVQCLNHVERYDPKENK 409 (482)
Q Consensus 383 ~~lyv~GG~~~~~~~~~~~~yd~~~~~ 409 (482)
++|. +|+.+ ..+..||+.+..
T Consensus 146 ~~Lv-Vg~~~-----r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 146 NRLV-VGTSD-----RKVLIYDLRNLD 166 (323)
T ss_pred CEEE-EeecC-----ceEEEEEccccc
Confidence 5554 55432 468888887654
No 145
>PLN00181 protein SPA1-RELATED; Provisional
Probab=82.29 E-value=44 Score=36.17 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=52.4
Q ss_pred CEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEE--ECCEEEEEeccCCCcccCeEEEEeCCCCceee
Q psy11333 335 DLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAV--LDGFLYAVGGQDGVQCLNHVERYDPKENKWSR 412 (482)
Q Consensus 335 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~ 412 (482)
+...+.|+.+ ..+..||..+++-...... ....-.++.. .++.+++.||.++ .+..||..+..-.
T Consensus 545 ~~~las~~~D-----g~v~lWd~~~~~~~~~~~~--H~~~V~~l~~~p~~~~~L~Sgs~Dg-----~v~iWd~~~~~~~- 611 (793)
T PLN00181 545 KSQVASSNFE-----GVVQVWDVARSQLVTEMKE--HEKRVWSIDYSSADPTLLASGSDDG-----SVKLWSINQGVSI- 611 (793)
T ss_pred CCEEEEEeCC-----CeEEEEECCCCeEEEEecC--CCCCEEEEEEcCCCCCEEEEEcCCC-----EEEEEECCCCcEE-
Confidence 4556666655 3688999887653322011 1111223333 2567888888653 5778887654321
Q ss_pred cCCCCCCccceEEEE--ECCEEEEEcCCCCCCCCCeEEEEeCCC
Q psy11333 413 VAPMTTRRLGVAVAV--LGGFLYAIGGSDGQSPLNTVERFDPKL 454 (482)
Q Consensus 413 ~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~y~~~~ 454 (482)
..+.......++.. -++..++.|+.+ +.+.+||..+
T Consensus 612 -~~~~~~~~v~~v~~~~~~g~~latgs~d-----g~I~iwD~~~ 649 (793)
T PLN00181 612 -GTIKTKANICCVQFPSESGRSLAFGSAD-----HKVYYYDLRN 649 (793)
T ss_pred -EEEecCCCeEEEEEeCCCCCEEEEEeCC-----CeEEEEECCC
Confidence 11111111111211 146777777765 3577777754
No 146
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=80.59 E-value=44 Score=30.19 Aligned_cols=133 Identities=16% Similarity=0.199 Sum_probs=76.8
Q ss_pred CCCCceeEEEeCCCCCeeeccCCCCCC------------CceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCc----e
Q psy11333 299 GDAISSVERYDPQSSDWKIVAPMSKRR------------CGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQ----W 362 (482)
Q Consensus 299 ~~~~~~~~~~d~~~~~W~~~~~~~~~~------------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~----W 362 (482)
....+.+.+||..+++-.....+|... ...-.++-.+-|+|+-........=.+-+.||.+.. |
T Consensus 85 ~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw 164 (250)
T PF02191_consen 85 KYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTW 164 (250)
T ss_pred ecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEE
Confidence 345678999999999755222222221 223345556678888655433322345677887665 5
Q ss_pred eecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecC-CCCCCccceEEEEE---CCEEEEEc
Q psy11333 363 SCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVA-PMTTRRLGVAVAVL---GGFLYAIG 436 (482)
Q Consensus 363 ~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~~---~~~i~v~G 436 (482)
. .+.+.+.... +...=|.||++...+... ..-...||+.+++=..+. +++.+-...++... +.+||+.-
T Consensus 165 ~---T~~~k~~~~n-aFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 165 N---TSYPKRSAGN-AFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred E---eccCchhhcc-eeeEeeEEEEEEECCCCC-cEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEE
Confidence 4 2233333333 344457899998765432 345678999988765433 33444445555555 56788874
No 147
>KOG3840|consensus
Probab=80.41 E-value=5.9 Score=35.80 Aligned_cols=88 Identities=14% Similarity=0.182 Sum_probs=61.4
Q ss_pred cCCceeEEEEeCCeEEeceeEEeecc-CHHHHHHhcCCCCcCccc---eEEE-ccCCHHHHHHHHHHhhcCeeeec-ccc
Q psy11333 34 HRELCDVVLNVGARKIFAHRVVLSAC-SPYFRAMFTGELAESRQA---EVTI-RDIDDVAMDNLIEFCYTSHITVE-ESN 107 (482)
Q Consensus 34 ~~~~~Dv~i~~~~~~~~~hk~iL~~~-S~~F~~~~~~~~~e~~~~---~i~l-~~~~~~~~~~~l~~~y~~~~~~~-~~~ 107 (482)
.+..--++..+++..|.+.+.+|.++ -..+-.||.++..-...+ +.++ ++++...|..+|+|-.+|.+..+ .-.
T Consensus 92 pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vS 171 (438)
T KOG3840|consen 92 PGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVS 171 (438)
T ss_pred CCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCc
Confidence 44444578889999999999998754 334556666665444433 3555 78999999999999999987654 345
Q ss_pred HhhHHHHhcccChh
Q psy11333 108 VQTLLPAACLLQLV 121 (482)
Q Consensus 108 ~~~ll~~a~~~~~~ 121 (482)
+.+|-++++++.++
T Consensus 172 vpELrEACDYLlip 185 (438)
T KOG3840|consen 172 VSELREACDYLLVP 185 (438)
T ss_pred hHHHHhhcceEEee
Confidence 66666666666554
No 148
>KOG0281|consensus
Probab=79.92 E-value=9.2 Score=35.39 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=59.3
Q ss_pred ECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceee
Q psy11333 333 LNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSR 412 (482)
Q Consensus 333 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~ 412 (482)
++++ |++.... -.++-+|+..|...-+. +.-.+.+.++.-+.|++.|.|..+ +++-.||.+....-.
T Consensus 328 fd~k-yIVsASg----DRTikvW~~st~efvRt---l~gHkRGIAClQYr~rlvVSGSSD-----ntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 328 FDDK-YIVSASG----DRTIKVWSTSTCEFVRT---LNGHKRGIACLQYRDRLVVSGSSD-----NTIRLWDIECGACLR 394 (499)
T ss_pred cccc-eEEEecC----CceEEEEeccceeeehh---hhcccccceehhccCeEEEecCCC-----ceEEEEeccccHHHH
Confidence 5777 5554322 25788899988876544 444556778889999999998643 467778887765433
Q ss_pred cCCCCCCccceEEEEECCEEEEEcCCCC
Q psy11333 413 VAPMTTRRLGVAVAVLGGFLYAIGGSDG 440 (482)
Q Consensus 413 ~~~~~~~r~~~~~~~~~~~i~v~GG~~~ 440 (482)
+-.-... --..+.++++=.|-||++|
T Consensus 395 vLeGHEe--LvRciRFd~krIVSGaYDG 420 (499)
T KOG0281|consen 395 VLEGHEE--LVRCIRFDNKRIVSGAYDG 420 (499)
T ss_pred HHhchHH--hhhheeecCceeeeccccc
Confidence 3211111 1123556777788888765
No 149
>PRK04922 tolB translocation protein TolB; Provisional
Probab=79.89 E-value=66 Score=31.83 Aligned_cols=103 Identities=16% Similarity=0.067 Sum_probs=55.3
Q ss_pred CeEEEEeCCCCceeecCCCCCCcccceeEEEECC-EEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEE
Q psy11333 350 NSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDG-FLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVL 428 (482)
Q Consensus 350 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 428 (482)
..++.+|..+++-+.+ ...+.. .......-+| +|++....++ ...++.+|+.+.....+..-..... .....-
T Consensus 228 ~~l~~~dl~~g~~~~l-~~~~g~-~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~~~~~~-~~~~sp 301 (433)
T PRK04922 228 SAIYVQDLATGQRELV-ASFRGI-NGAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNHFGIDT-EPTWAP 301 (433)
T ss_pred cEEEEEECCCCCEEEe-ccCCCC-ccCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccCCCCcc-ceEECC
Confidence 5689999998887776 433321 1112223344 4554433322 2579999998887666543221111 111222
Q ss_pred CC-EEEEEcCCCCCCCCCeEEEEeCCCCceeecC
Q psy11333 429 GG-FLYAIGGSDGQSPLNTVERFDPKLNRWTAMA 461 (482)
Q Consensus 429 ~~-~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~~ 461 (482)
+| .|++.....+. ..++.+|..+++++.+.
T Consensus 302 DG~~l~f~sd~~g~---~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 302 DGKSIYFTSDRGGR---PQIYRVAASGGSAERLT 332 (433)
T ss_pred CCCEEEEEECCCCC---ceEEEEECCCCCeEEee
Confidence 44 45554433322 46888887777666553
No 150
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=79.03 E-value=2.4 Score=30.37 Aligned_cols=38 Identities=24% Similarity=0.573 Sum_probs=29.4
Q ss_pred eeccccHhhHHHHhcccChhhHHHHHHHHHhccCCCCC
Q psy11333 102 TVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLDPSN 139 (482)
Q Consensus 102 ~~~~~~~~~ll~~a~~~~~~~L~~~~~~~i~~~~~~~~ 139 (482)
.++.+.+.+|+.+|++|+++.|.+.|...+...+...+
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks 47 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKS 47 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCC
Confidence 45667889999999999999999999999987765443
No 151
>KOG0318|consensus
Probab=78.43 E-value=20 Score=35.25 Aligned_cols=104 Identities=22% Similarity=0.279 Sum_probs=62.0
Q ss_pred ECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEE--CCEEEEEeccCCCcccCeEEEEeCCCCce
Q psy11333 333 LNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVL--DGFLYAVGGQDGVQCLNHVERYDPKENKW 410 (482)
Q Consensus 333 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W 410 (482)
.++...++||.++ .+++|....+.-... ..+...|...+.+.+ +++.++.|-. ...+..||..++.=
T Consensus 453 ~~~~~vaVGG~Dg-----kvhvysl~g~~l~ee-~~~~~h~a~iT~vaySpd~~yla~~Da-----~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 453 PDGSEVAVGGQDG-----KVHVYSLSGDELKEE-AKLLEHRAAITDVAYSPDGAYLAAGDA-----SRKVVLYDVASREV 521 (603)
T ss_pred CCCCEEEEecccc-----eEEEEEecCCcccce-eeeecccCCceEEEECCCCcEEEEecc-----CCcEEEEEcccCce
Confidence 3777888898775 488888887664433 334445554455444 5676666643 34566777664432
Q ss_pred eecCC--CCCCccceEEEEECCEEEEEcCCCCCCCCCeEEEEeCC
Q psy11333 411 SRVAP--MTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPK 453 (482)
Q Consensus 411 ~~~~~--~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~ 453 (482)
.... ...+|....+-.-+++++..|+.+ ..+.+|+.+
T Consensus 522 -~~~~w~FHtakI~~~aWsP~n~~vATGSlD-----t~Viiysv~ 560 (603)
T KOG0318|consen 522 -KTNRWAFHTAKINCVAWSPNNKLVATGSLD-----TNVIIYSVK 560 (603)
T ss_pred -ecceeeeeeeeEEEEEeCCCceEEEecccc-----ceEEEEEcc
Confidence 1111 233444444444588888888865 357888765
No 152
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=78.33 E-value=55 Score=30.04 Aligned_cols=134 Identities=14% Similarity=0.264 Sum_probs=81.3
Q ss_pred eeccCCCCC--CCceeEEEECCEEEEEecCCC---------C--C---C---CCeEEEEeCCCCc----eeecCCCCCCc
Q psy11333 316 KIVAPMSKR--RCGVGVAVLNDLLYAVGGHDG---------Q--S---Y---LNSIERYDPQTNQ----WSCDVAPTTSC 372 (482)
Q Consensus 316 ~~~~~~~~~--~~~~~~~~~~~~iyv~GG~~~---------~--~---~---~~~~~~yd~~~~~----W~~~~~~~~~~ 372 (482)
+.+++.|.. -++-++..+++.|| +||+-. . . . .+-|..||.++++ |++- .-.+
T Consensus 26 elvG~~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkes---ih~~ 101 (339)
T PF09910_consen 26 ELVGPPPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKES---IHDK 101 (339)
T ss_pred eeccCCCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecc---cCCc
Confidence 345555532 23445555788887 577521 0 0 0 2458899999887 6543 3334
Q ss_pred ccceeEEE------ECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECCEEEEEcCCCCCCCCCe
Q psy11333 373 RTSVGVAV------LDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNT 446 (482)
Q Consensus 373 r~~~~~~~------~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~ 446 (482)
+.+.+-++ ++++||+.-+-+ . ..-.++..|.++.+=+.+.+-|.+. .+.+.+...|-+ .+.......
T Consensus 102 ~~WaGEVSdIlYdP~~D~LLlAR~DG-h-~nLGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~~~g~~~ 174 (339)
T PF09910_consen 102 TKWAGEVSDILYDPYEDRLLLARADG-H-ANLGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNFHKGVSG 174 (339)
T ss_pred cccccchhheeeCCCcCEEEEEecCC-c-ceeeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec--cccccCCce
Confidence 55555442 368888886422 1 1236888898888877777666552 344444455544 333344678
Q ss_pred EEEEeCCCCce--eec
Q psy11333 447 VERFDPKLNRW--TAM 460 (482)
Q Consensus 447 ~~~y~~~~~~W--~~~ 460 (482)
+.|||..+++| +..
T Consensus 175 i~~~Dli~~~~~~e~f 190 (339)
T PF09910_consen 175 IHCLDLISGKWVIESF 190 (339)
T ss_pred EEEEEccCCeEEEEec
Confidence 99999999999 444
No 153
>PTZ00421 coronin; Provisional
Probab=78.25 E-value=80 Score=31.88 Aligned_cols=107 Identities=14% Similarity=0.135 Sum_probs=53.3
Q ss_pred CEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEE-EECCEEEEEeccCCCcccCeEEEEeCCCCcee-e
Q psy11333 335 DLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVA-VLDGFLYAVGGQDGVQCLNHVERYDPKENKWS-R 412 (482)
Q Consensus 335 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~-~ 412 (482)
+.+++.||.+ ..+.+||..+.+-...-...... -.++. ..++.+++.|+.++ .+..||+.+.+-. .
T Consensus 138 ~~iLaSgs~D-----gtVrIWDl~tg~~~~~l~~h~~~--V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 138 MNVLASAGAD-----MVVNVWDVERGKAVEVIKCHSDQ--ITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDGTIVSS 205 (493)
T ss_pred CCEEEEEeCC-----CEEEEEECCCCeEEEEEcCCCCc--eEEEEEECCCCEEEEecCCC-----EEEEEECCCCcEEEE
Confidence 4577778765 36889999877532220111111 11222 23678888887643 5778999876422 1
Q ss_pred cCCCCCCccceEEEEECCEEEEEcCCCCCCCCCeEEEEeCCC
Q psy11333 413 VAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKL 454 (482)
Q Consensus 413 ~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~ 454 (482)
+......+........++..++.+|.++. .-+.+..||..+
T Consensus 206 l~~H~~~~~~~~~w~~~~~~ivt~G~s~s-~Dr~VklWDlr~ 246 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKDLIITLGCSKS-QQRQIMLWDTRK 246 (493)
T ss_pred EecCCCCcceEEEEcCCCCeEEEEecCCC-CCCeEEEEeCCC
Confidence 22111111111121223334444443321 125688888764
No 154
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=78.15 E-value=67 Score=30.94 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=80.2
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCC--CeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCc--e
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSS--DWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQ--W 362 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W 362 (482)
+++||+-... + .+++||+.+. .|..-.... ++.....++.++.+|+.. ....+++.|..+.+ |
T Consensus 111 ~G~i~~g~~~-g-----~~y~ld~~~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s------~~g~~~al~~~tG~~~W 177 (370)
T COG1520 111 DGKIYVGSWD-G-----KLYALDASTGTLVWSRNVGGS-PYYASPPVVGDGTVYVGT------DDGHLYALNADTGTLKW 177 (370)
T ss_pred CCeEEEeccc-c-----eEEEEECCCCcEEEEEecCCC-eEEecCcEEcCcEEEEec------CCCeEEEEEccCCcEEE
Confidence 5676655432 1 6899999644 586543332 333334445577777653 12468888888554 8
Q ss_pred eecCCCC-CCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCC--ceeecCCCCCCccce--EEEEECCEEEEEcC
Q psy11333 363 SCDVAPT-TSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKEN--KWSRVAPMTTRRLGV--AVAVLGGFLYAIGG 437 (482)
Q Consensus 363 ~~~~~~~-~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~~--~~~~~~~~i~v~GG 437 (482)
+.- .+. ...+...+.+..++.+|+.... . ...++.+|+.+. .|..-...+..+... .....++.||+-||
T Consensus 178 ~~~-~~~~~~~~~~~~~~~~~~~vy~~~~~---~-~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~ 252 (370)
T COG1520 178 TYE-TPAPLSLSIYGSPAIASGTVYVGSDG---Y-DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGG 252 (370)
T ss_pred EEe-cCCccccccccCceeecceEEEecCC---C-cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCc
Confidence 844 222 2333333334677777776432 1 236888998744 687533333222211 12233444444444
Q ss_pred CCCCCCCCeEEEEeCCCC--ceeec
Q psy11333 438 SDGQSPLNTVERFDPKLN--RWTAM 460 (482)
Q Consensus 438 ~~~~~~~~~~~~y~~~~~--~W~~~ 460 (482)
.-.......+.++|..+. .|+.-
T Consensus 253 ~~~~~~~g~~~~l~~~~G~~~W~~~ 277 (370)
T COG1520 253 VYAGSYGGKLLCLDADTGELIWSFP 277 (370)
T ss_pred EEEEecCCeEEEEEcCCCceEEEEe
Confidence 100011234677776543 46553
No 155
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=77.72 E-value=1.3e+02 Score=33.89 Aligned_cols=118 Identities=18% Similarity=0.220 Sum_probs=65.2
Q ss_pred eEEEE--CCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCC---------CC---CcccceeEEEE--CCEEEEEeccC
Q psy11333 329 GVAVL--NDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAP---------TT---SCRTSVGVAVL--DGFLYAVGGQD 392 (482)
Q Consensus 329 ~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---------~~---~~r~~~~~~~~--~~~lyv~GG~~ 392 (482)
.+++- ++.|||.... .+.+++||+.+......... .. ....-.++++. ++.||+....
T Consensus 687 gVa~dp~~g~LyVad~~-----~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~- 760 (1057)
T PLN02919 687 DVCFEPVNEKVYIAMAG-----QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE- 760 (1057)
T ss_pred EEEEecCCCeEEEEECC-----CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-
Confidence 44443 6788887542 24689999887765533110 00 00111233333 3459988653
Q ss_pred CCcccCeEEEEeCCCCceeecC--C--CCC--------------Ccc--ceEEEE-ECCEEEEEcCCCCCCCCCeEEEEe
Q psy11333 393 GVQCLNHVERYDPKENKWSRVA--P--MTT--------------RRL--GVAVAV-LGGFLYAIGGSDGQSPLNTVERFD 451 (482)
Q Consensus 393 ~~~~~~~~~~yd~~~~~W~~~~--~--~~~--------------~r~--~~~~~~-~~~~i~v~GG~~~~~~~~~~~~y~ 451 (482)
.+.+.+||+.+.....+. . .+. ... -.++++ -+|.+||....+ +.|.+||
T Consensus 761 ----n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-----~rIrviD 831 (1057)
T PLN02919 761 ----SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-----HKIKKLD 831 (1057)
T ss_pred ----CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-----CEEEEEE
Confidence 257889998866532211 0 000 000 112222 367899887554 5799999
Q ss_pred CCCCceeecC
Q psy11333 452 PKLNRWTAMA 461 (482)
Q Consensus 452 ~~~~~W~~~~ 461 (482)
++++....++
T Consensus 832 ~~tg~v~tia 841 (1057)
T PLN02919 832 PATKRVTTLA 841 (1057)
T ss_pred CCCCeEEEEe
Confidence 9888777654
No 156
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=77.48 E-value=11 Score=29.34 Aligned_cols=94 Identities=11% Similarity=0.197 Sum_probs=62.0
Q ss_pred EEEEe-CCeEEeceeEEeeccCHHHHHHhcCCCCcCccceEEEccCCHHHHHHHHHHhhcCeee----------------
Q psy11333 40 VVLNV-GARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDVAMDNLIEFCYTSHIT---------------- 102 (482)
Q Consensus 40 v~i~~-~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~y~~~~~---------------- 102 (482)
+.++. +|+.|.+.+.+. .+|-..+.|+... .+. .-.+..+++....|..+++||-.....
T Consensus 4 i~l~s~dge~F~vd~~iA-erSiLikN~l~d~-~~~-n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~ 80 (158)
T COG5201 4 IELESIDGEIFRVDENIA-ERSILIKNMLCDS-TAC-NYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPS 80 (158)
T ss_pred eEEEecCCcEEEehHHHH-HHHHHHHHHhccc-ccc-CCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCc
Confidence 44444 577888877664 4777777766432 111 112567889999999999999653211
Q ss_pred ---------eccccHhhHHHHhcccChhhHHHHHHHHHhccCC
Q psy11333 103 ---------VEESNVQTLLPAACLLQLVEIQDICCEFLKRQLD 136 (482)
Q Consensus 103 ---------~~~~~~~~ll~~a~~~~~~~L~~~~~~~i~~~~~ 136 (482)
++.+.+.++..+|+++.++-|.++|+..+.+.+.
T Consensus 81 D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 81 DFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred cHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 1223355677778888888888888887766554
No 157
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=77.38 E-value=3 Score=38.40 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=53.3
Q ss_pred HHHHHHHhc---cCCCCCHHHHHHHHhhCCCHHHHHHHHHHHHHhHHHHhcc-cccccCCHHHHhHhhc
Q psy11333 125 DICCEFLKR---QLDPSNCLGIRAFADTHSCRDLLRIADKFTQHNFQEVMES-EEFLILPVAQLVDIIS 189 (482)
Q Consensus 125 ~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~i~~~~~~l~~~-~~f~~l~~~~l~~il~ 189 (482)
+...+|+.. .+.++|++.++..+.....+.|.+.|++|+..|+.+++.. ..+.-|+.+.+.++-.
T Consensus 59 ~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa~ 127 (317)
T PF11822_consen 59 EWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRLAD 127 (317)
T ss_pred HHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHHH
Confidence 344555554 4567899999999999999999999999999999998876 5677888888888744
No 158
>KOG2723|consensus
Probab=77.27 E-value=8.4 Score=33.67 Aligned_cols=93 Identities=24% Similarity=0.264 Sum_probs=63.0
Q ss_pred CceeEE-EEeCCeEEeceeE-EeeccCHHHHHHhcCCCCcCccce-EEEccCCHHHHHHHHHHhhcCeeee--ccccHhh
Q psy11333 36 ELCDVV-LNVGARKIFAHRV-VLSACSPYFRAMFTGELAESRQAE-VTIRDIDDVAMDNLIEFCYTSHITV--EESNVQT 110 (482)
Q Consensus 36 ~~~Dv~-i~~~~~~~~~hk~-iL~~~S~~F~~~~~~~~~e~~~~~-i~l~~~~~~~~~~~l~~~y~~~~~~--~~~~~~~ 110 (482)
.+.|++ +-++|+-|..-.. +.+-.-..+..||++......... -...+-+-..|.-+++|+-+....+ +..+...
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fIDRDG~lFRyvL~~LRt~~l~lpe~f~e~~~ 85 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFIDRDGFLFRYVLDYLRTKALLLPEDFAEVER 85 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEcCCcchHHHHHHHhcccccccchhhhhHHH
Confidence 455655 5566666654444 445556688889887544444332 2335667788999999999954434 4467889
Q ss_pred HHHHhcccChhhHHHHHH
Q psy11333 111 LLPAACLLQLVEIQDICC 128 (482)
Q Consensus 111 ll~~a~~~~~~~L~~~~~ 128 (482)
+.+.|++|+++.+.....
T Consensus 86 L~rEA~f~~l~~~~~~l~ 103 (221)
T KOG2723|consen 86 LVREAEFFQLEAPVTYLL 103 (221)
T ss_pred HHHHHHHHccccHHHHHh
Confidence 999999999998876433
No 159
>KOG0263|consensus
Probab=76.94 E-value=75 Score=32.96 Aligned_cols=106 Identities=21% Similarity=0.243 Sum_probs=60.7
Q ss_pred EEEECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEE-ECCEEEEEeccCCCcccCeEEEEeCCCC
Q psy11333 330 VAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAV-LDGFLYAVGGQDGVQCLNHVERYDPKEN 408 (482)
Q Consensus 330 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~yd~~~~ 408 (482)
+...-|.=|+.+|... .+|..||..++.-.++-. ...+.-.+++. -.|+-.+.|+.++ .+..||..+.
T Consensus 541 v~FHPNs~Y~aTGSsD----~tVRlWDv~~G~~VRiF~--GH~~~V~al~~Sp~Gr~LaSg~ed~-----~I~iWDl~~~ 609 (707)
T KOG0263|consen 541 VSFHPNSNYVATGSSD----RTVRLWDVSTGNSVRIFT--GHKGPVTALAFSPCGRYLASGDEDG-----LIKIWDLANG 609 (707)
T ss_pred EEECCcccccccCCCC----ceEEEEEcCCCcEEEEec--CCCCceEEEEEcCCCceEeecccCC-----cEEEEEcCCC
Confidence 3345677788877433 578899999888766621 12222233333 3677667776543 4778888765
Q ss_pred ceeecCCCC--CCccceEEEEECCEEEEEcCCCCCCCCCeEEEEeCC
Q psy11333 409 KWSRVAPMT--TRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPK 453 (482)
Q Consensus 409 ~W~~~~~~~--~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~ 453 (482)
+- +..+- ..-...-....+|.+++.||-+ +++..||..
T Consensus 610 ~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~D-----nsV~lWD~~ 649 (707)
T KOG0263|consen 610 SL--VKQLKGHTGTIYSLSFSRDGNVLASGGAD-----NSVRLWDLT 649 (707)
T ss_pred cc--hhhhhcccCceeEEEEecCCCEEEecCCC-----CeEEEEEch
Confidence 42 11111 1111222234488999999975 456666653
No 160
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=76.18 E-value=92 Score=31.46 Aligned_cols=71 Identities=14% Similarity=0.220 Sum_probs=39.8
Q ss_pred cEEEEeccccCCCCCceeEEEeCCCC--CeeeccCCCC-CC--CceeEEEECCEEEEEecCCCC----CCCCeEEEEeCC
Q psy11333 288 EVLFAVGGWCSGDAISSVERYDPQSS--DWKIVAPMSK-RR--CGVGVAVLNDLLYAVGGHDGQ----SYLNSIERYDPQ 358 (482)
Q Consensus 288 ~~l~~~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~~~-~~--~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~yd~~ 358 (482)
+.||+... ...++.+|..+. .|+.-..... .. ...+.++.++.+|+ |..+.. .....++++|..
T Consensus 111 ~~V~v~~~------~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~ 183 (488)
T cd00216 111 RKVFFGTF------DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVE 183 (488)
T ss_pred CeEEEecC------CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECC
Confidence 67776432 146899999876 4865332211 11 12233455666664 432221 123578999998
Q ss_pred CCc--eeec
Q psy11333 359 TNQ--WSCD 365 (482)
Q Consensus 359 ~~~--W~~~ 365 (482)
|.+ |+.-
T Consensus 184 TG~~~W~~~ 192 (488)
T cd00216 184 TGKLLWRFY 192 (488)
T ss_pred CCceeeEee
Confidence 776 8753
No 161
>KOG0316|consensus
Probab=76.14 E-value=55 Score=28.91 Aligned_cols=115 Identities=13% Similarity=0.150 Sum_probs=66.4
Q ss_pred CeEEEEeCCCCceeecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEEC
Q psy11333 350 NSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLG 429 (482)
Q Consensus 350 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 429 (482)
+++-.|||....--+-........-. +..+.++.=+..||-+ ..+..||.+|.+-.. .+..-...-.++.+|
T Consensus 39 rtvrLWNp~rg~liktYsghG~EVlD-~~~s~Dnskf~s~GgD-----k~v~vwDV~TGkv~R--r~rgH~aqVNtV~fN 110 (307)
T KOG0316|consen 39 RTVRLWNPLRGALIKTYSGHGHEVLD-AALSSDNSKFASCGGD-----KAVQVWDVNTGKVDR--RFRGHLAQVNTVRFN 110 (307)
T ss_pred ceEEeecccccceeeeecCCCceeee-ccccccccccccCCCC-----ceEEEEEcccCeeee--ecccccceeeEEEec
Confidence 57888999877643221221111111 2234555556665532 468899999876321 111111112234444
Q ss_pred C--EEEEEcCCCCCCCCCeEEEEeCCCCceeecCCCCcCCCceeEEEEcC
Q psy11333 430 G--FLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVG 477 (482)
Q Consensus 430 ~--~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~~~~~~~r~~~~~~~~~~ 477 (482)
. .+.+-|+++ .++.+||..++..+.+.-+...+.+-..+.+.+
T Consensus 111 eesSVv~SgsfD-----~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~ 155 (307)
T KOG0316|consen 111 EESSVVASGSFD-----SSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE 155 (307)
T ss_pred CcceEEEecccc-----ceeEEEEcccCCCCccchhhhhcCceeEEEecc
Confidence 4 566667665 578999999999888887777777776655543
No 162
>KOG2321|consensus
Probab=75.64 E-value=26 Score=34.97 Aligned_cols=62 Identities=24% Similarity=0.306 Sum_probs=40.5
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCC--CCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCc
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKR--RCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQ 361 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 361 (482)
.-.||+.|- -++||++|....+|- .|+... .-.+....--+.|.++||-+ ..|+.|||.+.+
T Consensus 145 scDly~~gs------g~evYRlNLEqGrfL--~P~~~~~~~lN~v~in~~hgLla~Gt~~-----g~VEfwDpR~ks 208 (703)
T KOG2321|consen 145 SCDLYLVGS------GSEVYRLNLEQGRFL--NPFETDSGELNVVSINEEHGLLACGTED-----GVVEFWDPRDKS 208 (703)
T ss_pred CccEEEeec------CcceEEEEccccccc--cccccccccceeeeecCccceEEecccC-----ceEEEecchhhh
Confidence 346777663 157999999999994 333322 22222222355788889865 379999998876
No 163
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=74.85 E-value=67 Score=29.23 Aligned_cols=118 Identities=14% Similarity=0.190 Sum_probs=68.0
Q ss_pred CCCCCCcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEE--ECCEEEEEecCCCCCCCCeEEEEeCCC
Q psy11333 282 KPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAV--LNDLLYAVGGHDGQSYLNSIERYDPQT 359 (482)
Q Consensus 282 ~~~~~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~ 359 (482)
.++.-++.+|+..= .-+.+-..||.+..=+.++.......+..-+- -.+++++.- .....+++|||.+
T Consensus 194 i~atpdGsvwyasl-----agnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~witt-----wg~g~l~rfdPs~ 263 (353)
T COG4257 194 ICATPDGSVWYASL-----AGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITT-----WGTGSLHRFDPSV 263 (353)
T ss_pred eEECCCCcEEEEec-----cccceEEcccccCCcceecCCCcccccccccccCccCcEEEec-----cCCceeeEeCccc
Confidence 34556788877631 11456778888775444443221111111111 255666651 1134689999999
Q ss_pred CceeecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecC
Q psy11333 360 NQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVA 414 (482)
Q Consensus 360 ~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 414 (482)
.+|.+-+-|-..+|....-+--.++++..-- ..+.+.+|||++.+.+.++
T Consensus 264 ~sW~eypLPgs~arpys~rVD~~grVW~sea-----~agai~rfdpeta~ftv~p 313 (353)
T COG4257 264 TSWIEYPLPGSKARPYSMRVDRHGRVWLSEA-----DAGAIGRFDPETARFTVLP 313 (353)
T ss_pred ccceeeeCCCCCCCcceeeeccCCcEEeecc-----ccCceeecCcccceEEEec
Confidence 9999772233344543333334577877531 2467899999999887765
No 164
>KOG0278|consensus
Probab=73.36 E-value=68 Score=28.63 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=64.7
Q ss_pred ceeEEEeCCCCCeeeccCCCCCCCceeEEE-ECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEE
Q psy11333 303 SSVERYDPQSSDWKIVAPMSKRRCGVGVAV-LNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVL 381 (482)
Q Consensus 303 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~ 381 (482)
..|-.+|..+.+=.+.-.++.+.. ++-+ -+|.|..+.= -.+|-.||+.+-.=-+- -.||......++--
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~Vt--SlEvs~dG~ilTia~------gssV~Fwdaksf~~lKs-~k~P~nV~SASL~P- 234 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSPVT--SLEVSQDGRILTIAY------GSSVKFWDAKSFGLLKS-YKMPCNVESASLHP- 234 (334)
T ss_pred CceEEEEeccCcEEEEEecCCCCc--ceeeccCCCEEEEec------CceeEEeccccccceee-ccCccccccccccC-
Confidence 456667777766443333333332 2222 2666665531 13577888776542211 24454443332222
Q ss_pred CCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEE---CCEEEEEcCCCC
Q psy11333 382 DGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVL---GGFLYAIGGSDG 440 (482)
Q Consensus 382 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~i~v~GG~~~ 440 (482)
+..+||.||.+. .+++||..|+.= +......-.++..++- +|.+|..|-.+|
T Consensus 235 ~k~~fVaGged~-----~~~kfDy~TgeE--i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 235 KKEFFVAGGEDF-----KVYKFDYNTGEE--IGSYNKGHFGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred CCceEEecCcce-----EEEEEeccCCce--eeecccCCCCceEEEEECCCCceeeccCCCc
Confidence 347899999643 477888887752 2222223333333322 899999998776
No 165
>KOG1332|consensus
Probab=73.10 E-value=43 Score=29.74 Aligned_cols=55 Identities=20% Similarity=0.357 Sum_probs=31.7
Q ss_pred EeCCCCceeec-CCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCC-ceeecCC
Q psy11333 355 YDPQTNQWSCD-VAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKEN-KWSRVAP 415 (482)
Q Consensus 355 yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~ 415 (482)
-+-+...|+.- -.+.|.+....+-...++-|-|.||. +.+.+|-...+ +|..++.
T Consensus 240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd------Nkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD------NKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred ecCccCcccccccccCCcceEEEEEeccccEEEEecCC------cEEEEEEeCCCCcEEEccc
Confidence 34456678743 13344455544444555555555553 56777766655 9998763
No 166
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=73.07 E-value=1.4e+02 Score=32.09 Aligned_cols=32 Identities=22% Similarity=0.439 Sum_probs=21.5
Q ss_pred CCCCCcEEEEeccccCCCCCceeEEEeCCCC--CeeeccC
Q psy11333 283 PSRRGEVLFAVGGWCSGDAISSVERYDPQSS--DWKIVAP 320 (482)
Q Consensus 283 ~~~~~~~l~~~GG~~~~~~~~~~~~~d~~~~--~W~~~~~ 320 (482)
.+.+++.||+... .+.++.+|..|. .|+.-+.
T Consensus 190 Plvvgg~lYv~t~------~~~V~ALDa~TGk~lW~~d~~ 223 (764)
T TIGR03074 190 PLKVGDTLYLCTP------HNKVIALDAATGKEKWKFDPK 223 (764)
T ss_pred CEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCC
Confidence 4456899998854 246788888765 4765443
No 167
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=72.95 E-value=78 Score=29.14 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=60.4
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCce--ee
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQW--SC 364 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--~~ 364 (482)
++.|++.-+ ++...--+|..|..+..-+.+..-|.+. ++.+.|-..|-+ .+-....+.+.|+|..+++| +.
T Consensus 117 ~D~LLlAR~--DGh~nLGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~~~g~~~i~~~Dli~~~~~~e~ 189 (339)
T PF09910_consen 117 EDRLLLARA--DGHANLGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNFHKGVSGIHCLDLISGKWVIES 189 (339)
T ss_pred cCEEEEEec--CCcceeeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec--cccccCCceEEEEEccCCeEEEEe
Confidence 577777754 2333336899999999888877666553 455556555544 33344467899999999999 54
Q ss_pred cCCCC-----C-CcccceeEEEECCEEEEE
Q psy11333 365 DVAPT-----T-SCRTSVGVAVLDGFLYAV 388 (482)
Q Consensus 365 ~~~~~-----~-~~r~~~~~~~~~~~lyv~ 388 (482)
...+. + ..|....++...+++|++
T Consensus 190 f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 190 FDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred cccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 41111 1 123345667778888877
No 168
>KOG0315|consensus
Probab=71.60 E-value=75 Score=28.38 Aligned_cols=145 Identities=16% Similarity=0.120 Sum_probs=74.6
Q ss_pred CCcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEE--ECCEEEEEecCCCCCCCCeEEEEeCCCCcee
Q psy11333 286 RGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAV--LNDLLYAVGGHDGQSYLNSIERYDPQTNQWS 363 (482)
Q Consensus 286 ~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 363 (482)
.+++..+.+|. ..|-.||..++.=..+...-.++-...++. .+|+--.-||-++ ++-+||...-.-.
T Consensus 50 pdk~~LAaa~~------qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg-----t~kIWdlR~~~~q 118 (311)
T KOG0315|consen 50 PDKKDLAAAGN------QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG-----TVKIWDLRSLSCQ 118 (311)
T ss_pred CCcchhhhccC------CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc-----eEEEEeccCcccc
Confidence 34555555553 468889998876433333333444444444 4777777777654 5778888774433
Q ss_pred ecCCCCCCcccceeEEEECCE-EEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEE-CCEEEEEcCCCCC
Q psy11333 364 CDVAPTTSCRTSVGVAVLDGF-LYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVL-GGFLYAIGGSDGQ 441 (482)
Q Consensus 364 ~~~~~~~~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~i~v~GG~~~~ 441 (482)
+. =..+.|.. .++..-+. =.+.|-. ...+++||+.++......-+...-...++.+. +|.+.+.+...
T Consensus 119 R~-~~~~spVn--~vvlhpnQteLis~dq-----sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnk-- 188 (311)
T KOG0315|consen 119 RN-YQHNSPVN--TVVLHPNQTELISGDQ-----SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNK-- 188 (311)
T ss_pred hh-ccCCCCcc--eEEecCCcceEEeecC-----CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCC--
Confidence 33 11111211 22222222 2233322 24689999999877554322222223333333 55555544333
Q ss_pred CCCCeEEEEeCCC
Q psy11333 442 SPLNTVERFDPKL 454 (482)
Q Consensus 442 ~~~~~~~~y~~~~ 454 (482)
...|+++.-+
T Consensus 189 ---G~cyvW~l~~ 198 (311)
T KOG0315|consen 189 ---GNCYVWRLLN 198 (311)
T ss_pred ---ccEEEEEccC
Confidence 3466666544
No 169
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=71.31 E-value=98 Score=29.61 Aligned_cols=118 Identities=12% Similarity=-0.030 Sum_probs=67.2
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEEE-CCEEEEEecCCC----CCCCCeEEEEeCCCCc
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVL-NDLLYAVGGHDG----QSYLNSIERYDPQTNQ 361 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~----~~~~~~~~~yd~~~~~ 361 (482)
...+||......... +.+..+|..+.+- +...+.+...+.+..- +..||+.-.+-. ....+.+.+||+.+.+
T Consensus 12 ~~~v~V~d~~~~~~~-~~v~ViD~~~~~v--~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 12 ARRVYVLDPGHFAAT-TQVYTIDGEAGRV--LGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred CCEEEEECCcccccC-ceEEEEECCCCEE--EEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 356788765321222 7899999988554 3444444444444222 557899876321 1235789999999998
Q ss_pred ee-ecCCCCCCcccc------eeEEEECC-EEEEEeccCCCcccCeEEEEeCCCCceee
Q psy11333 362 WS-CDVAPTTSCRTS------VGVAVLDG-FLYAVGGQDGVQCLNHVERYDPKENKWSR 412 (482)
Q Consensus 362 W~-~~~~~~~~~r~~------~~~~~~~~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~ 412 (482)
=. ++ +..+.||.. .....-+| .+||.. .+ ..+.+-+.|..+.+-..
T Consensus 89 ~~~~i-~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n-~~---p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 89 PIADI-ELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ-FS---PSPAVGVVDLEGKAFVR 142 (352)
T ss_pred EEeEE-ccCCCchhhccCccceEEECCCCCEEEEec-CC---CCCEEEEEECCCCcEEE
Confidence 65 34 322444421 12223344 466663 21 24678889988776543
No 170
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=71.12 E-value=98 Score=29.50 Aligned_cols=155 Identities=18% Similarity=0.247 Sum_probs=77.9
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCCC--eeecc--CCCCCCCceeEEEE--CCEEEEEecCCCCCCCCeEEEEeC--C
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSSD--WKIVA--PMSKRRCGVGVAVL--NDLLYAVGGHDGQSYLNSIERYDP--Q 358 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~~--W~~~~--~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~--~ 358 (482)
++.+|+..- -.+.++.|+..... +.... .++..-.-..++.. +..+||+.-.. +++.+|+. .
T Consensus 155 g~~v~v~dl-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~v~~~~~~ 224 (345)
T PF10282_consen 155 GRFVYVPDL-----GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVSVFDYDPS 224 (345)
T ss_dssp SSEEEEEET-----TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETT
T ss_pred CCEEEEEec-----CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC-----CcEEEEeeccc
Confidence 457777631 23577888777665 54432 22322222233343 34789987543 44555544 4
Q ss_pred CCceeec--CCCCCC---cc-cceeEEEE--CCEEEEEeccCCCcccCeEEEEeC--CCCceeecCCCCCCccceEEEEE
Q psy11333 359 TNQWSCD--VAPTTS---CR-TSVGVAVL--DGFLYAVGGQDGVQCLNHVERYDP--KENKWSRVAPMTTRRLGVAVAVL 428 (482)
Q Consensus 359 ~~~W~~~--~~~~~~---~r-~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~~~r~~~~~~~~ 428 (482)
+.+|+.+ .+.+|. .. ....++.. +..||+.... .+.+-.|+. .+.+.+.+...+..-.......+
T Consensus 225 ~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~ 299 (345)
T PF10282_consen 225 DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF 299 (345)
T ss_dssp TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE
T ss_pred CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE
Confidence 6666644 122322 12 22333333 4568887532 345666665 55566666544432222222222
Q ss_pred --CC-EEEEEcCCCCCCCCCeEEEE--eCCCCceeecC
Q psy11333 429 --GG-FLYAIGGSDGQSPLNTVERF--DPKLNRWTAMA 461 (482)
Q Consensus 429 --~~-~i~v~GG~~~~~~~~~~~~y--~~~~~~W~~~~ 461 (482)
+| .|||.+..+ +.+.+| |+++..++.+.
T Consensus 300 s~~g~~l~Va~~~s-----~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 300 SPDGRYLYVANQDS-----NTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp -TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEE
T ss_pred eCCCCEEEEEecCC-----CeEEEEEEeCCCCcEEEec
Confidence 44 566654333 456655 56788888875
No 171
>PRK03629 tolB translocation protein TolB; Provisional
Probab=70.63 E-value=1.1e+02 Score=30.12 Aligned_cols=141 Identities=10% Similarity=-0.007 Sum_probs=72.7
Q ss_pred ceeEEEeCCCCCeeeccCCCCCCCceeEEEECCE-EEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEE
Q psy11333 303 SSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDL-LYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVL 381 (482)
Q Consensus 303 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~ 381 (482)
..++.+|..+.+..++......... ....-+++ |+......+ ...++.+|+.+..-+++ ..... ........-
T Consensus 267 ~~I~~~d~~tg~~~~lt~~~~~~~~-~~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g~~~~l-t~~~~-~~~~~~~Sp 340 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTDGRSNNTE-PTWFPDSQNLAYTSDQAG---RPQVYKVNINGGAPQRI-TWEGS-QNQDADVSS 340 (429)
T ss_pred cEEEEEECCCCCEEEccCCCCCcCc-eEECCCCCEEEEEeCCCC---CceEEEEECCCCCeEEe-ecCCC-CccCEEECC
Confidence 3689999999887766543221111 11112454 444332221 24788999988877766 22111 111222233
Q ss_pred CCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECCEEEEEcCCCCCCCCCeEEEEeCCCC
Q psy11333 382 DGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLN 455 (482)
Q Consensus 382 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~ 455 (482)
+|+.+++.+..+. ...++.+|+.++.+..+.... ........-||+..++.+.++. ...++..+....
T Consensus 341 DG~~Ia~~~~~~g--~~~I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~--~~~l~~~~~~G~ 408 (429)
T PRK03629 341 DGKFMVMVSSNGG--QQHIAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGM--GSVLNLVSTDGR 408 (429)
T ss_pred CCCEEEEEEccCC--CceEEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCC--ceEEEEEECCCC
Confidence 5544444332221 246888999999888776421 1111223346665555554432 234666666543
No 172
>KOG0649|consensus
Probab=69.65 E-value=82 Score=28.03 Aligned_cols=154 Identities=12% Similarity=0.108 Sum_probs=76.7
Q ss_pred HHhcCCCCCC-CCCCCCCCCCCCCCCCcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEE--ECCEEE
Q psy11333 262 NYLLLPQERP-LMQGPRTRPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAV--LNDLLY 338 (482)
Q Consensus 262 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~--~~~~iy 338 (482)
.|...++.+. ..+.|........-..|.|+..||. ..++..|..+.+.+..-.- ..-+-|+++. .++.|
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G~i~r~~rG-HtDYvH~vv~R~~~~qi- 171 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDGRIQREYRG-HTDYVHSVVGRNANGQI- 171 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC------eEEEEEEecCCEEEEEEcC-CcceeeeeeecccCcce-
Confidence 3544433322 3444444443333346888888884 2578889999887653221 1122344443 13343
Q ss_pred EEecCCCCCCCCeEEEEeCCCCceeecCCC-----CCCcccc--eeEEEECCEEEEEeccCCCcccCeEEEEeCCCCcee
Q psy11333 339 AVGGHDGQSYLNSIERYDPQTNQWSCDVAP-----TTSCRTS--VGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWS 411 (482)
Q Consensus 339 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-----~~~~r~~--~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~ 411 (482)
+.||-++ ++-+||.+|.+-.+.-.+ ...|..+ .++...+..-.|.||- ...-.|++...+-+
T Consensus 172 lsG~EDG-----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------p~lslwhLrsse~t 240 (325)
T KOG0649|consen 172 LSGAEDG-----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------PKLSLWHLRSSEST 240 (325)
T ss_pred eecCCCc-----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC------CceeEEeccCCCce
Confidence 3455443 688999999987654111 1122221 2333333333444442 23334555544433
Q ss_pred ecCCCCCCccceEEEEECCEEEEEc
Q psy11333 412 RVAPMTTRRLGVAVAVLGGFLYAIG 436 (482)
Q Consensus 412 ~~~~~~~~r~~~~~~~~~~~i~v~G 436 (482)
.+ .|.|...+-+...++.+.+.|
T Consensus 241 ~v--fpipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 241 CV--FPIPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred EE--EecccceeEeeeecceEEEec
Confidence 33 344444455555566666655
No 173
>KOG3545|consensus
Probab=69.51 E-value=84 Score=28.08 Aligned_cols=165 Identities=13% Similarity=0.179 Sum_probs=91.0
Q ss_pred CcEEEEeccccCCCCCceeEEEeC----CCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCc-
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDP----QSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQ- 361 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~----~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~- 361 (482)
++++|+..+. ....+..|.. ....|...-.+|.+-.+.+-++++|.+|.-.+ ..+.+.+|+..+..
T Consensus 30 ~~r~~~~~~~----~~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVynGs~yynk~-----~t~~ivky~l~~~~~ 100 (249)
T KOG3545|consen 30 DDRIYVMNYF----DGLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVYNGSLYYNKA-----GTRNIIKYDLETRTV 100 (249)
T ss_pred cCceEEeccc----cCceEEEeccHHHhhccCcceEEeCCCCccccceEEEcceEEeecc-----CCcceEEEEeeccee
Confidence 5677777432 2234555554 33445555567888888888899999997653 23568899998743
Q ss_pred --eeecCCCCCC---------cccceeEEEECCEEEEEeccCCCcccCeEEEEeCCC----CceeecCCCCCCccceEEE
Q psy11333 362 --WSCDVAPTTS---------CRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKE----NKWSRVAPMTTRRLGVAVA 426 (482)
Q Consensus 362 --W~~~~~~~~~---------~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~----~~W~~~~~~~~~r~~~~~~ 426 (482)
|+.+ +.+.. +.....+++..+-||++=-..+....-.+-+.||.+ .+|..- .+ ++....+.
T Consensus 101 ~~~~~l-p~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~--~~-k~~~~~aF 176 (249)
T KOG3545|consen 101 AGSAAL-PYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTT--LP-KRSAGNAF 176 (249)
T ss_pred eeeeec-cccccCCCcccccCCCccccceecccceeEEecccccCCcEEeeccCHHHhheeeeeccc--cC-CCCcCceE
Confidence 5555 22211 112234566666677775433222122346677743 345321 12 23333344
Q ss_pred EECCEEEEEcCCCCCCCCCeE-EEEeCCCCceeecCCCCcCC
Q psy11333 427 VLGGFLYAIGGSDGQSPLNTV-ERFDPKLNRWTAMAPMSTRR 467 (482)
Q Consensus 427 ~~~~~i~v~GG~~~~~~~~~~-~~y~~~~~~W~~~~~~~~~r 467 (482)
++=|.+|++-..+... ..| +.||..+++=+. +++|.+.
T Consensus 177 ~iCGvLY~v~S~~~~~--~~i~yaydt~~~~~~~-~~ipf~N 215 (249)
T KOG3545|consen 177 MICGVLYVVHSYNCTH--TQISYAYDTTTGTQER-IDLPFPN 215 (249)
T ss_pred EEeeeeEEEeccccCC--ceEEEEEEcCCCceec-ccccccc
Confidence 4457788886654322 234 789988776533 3444433
No 174
>KOG1898|consensus
Probab=68.89 E-value=1.8e+02 Score=31.80 Aligned_cols=161 Identities=15% Similarity=0.139 Sum_probs=88.2
Q ss_pred CCceeEEEeCCCCCeeeccCCCCCCCceeEEE--E---CCE-EEEEecCCCCC------CCCeEEEEeCC--CCceeecC
Q psy11333 301 AISSVERYDPQSSDWKIVAPMSKRRCGVGVAV--L---NDL-LYAVGGHDGQS------YLNSIERYDPQ--TNQWSCDV 366 (482)
Q Consensus 301 ~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~--~---~~~-iyv~GG~~~~~------~~~~~~~yd~~--~~~W~~~~ 366 (482)
..+.+..+|+.+++-...-+++..-..++++. + +.. +..+|+..... ....++.|+.. .++-+.+
T Consensus 851 w~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lell- 929 (1205)
T KOG1898|consen 851 WVSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELL- 929 (1205)
T ss_pred ccceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeee-
Confidence 55678888888887655544444433333333 2 222 44555532211 12236666654 3334444
Q ss_pred CCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEE-CCEEEEEcCCCCCCCCC
Q psy11333 367 APTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVL-GGFLYAIGGSDGQSPLN 445 (482)
Q Consensus 367 ~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~i~v~GG~~~~~~~~ 445 (482)
...+.+-.-++++-+.|++++--| +.+.+||.-.++-........-+...+.... ..+|+ +|.... .-
T Consensus 930 h~T~~~~~v~Ai~~f~~~~LagvG-------~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~-VgD~qe---SV 998 (1205)
T KOG1898|consen 930 HKTEIPGPVGAICPFQGRVLAGVG-------RFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIV-VGDIQE---SV 998 (1205)
T ss_pred eccCCCccceEEeccCCEEEEecc-------cEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEE-Eeeccc---eE
Confidence 222222233566777786665444 5688899887765443333322223333333 44554 444321 23
Q ss_pred eEEEEeCCCCceeecCCCCcCCCceeEE
Q psy11333 446 TVERFDPKLNRWTAMAPMSTRRKHLGCA 473 (482)
Q Consensus 446 ~~~~y~~~~~~W~~~~~~~~~r~~~~~~ 473 (482)
...+|++..|+.-.+++-|.||+-..+.
T Consensus 999 ~~~~y~~~~n~l~~fadD~~pR~Vt~~~ 1026 (1205)
T KOG1898|consen 999 HFVRYRREDNQLIVFADDPVPRHVTALE 1026 (1205)
T ss_pred EEEEEecCCCeEEEEeCCCccceeeEEE
Confidence 4688999999999999999999765443
No 175
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=67.86 E-value=56 Score=29.29 Aligned_cols=65 Identities=23% Similarity=0.312 Sum_probs=38.4
Q ss_pred ceeEEEECCEEEEEe-cCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEECCEEEEEecc
Q psy11333 327 GVGVAVLNDLLYAVG-GHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQ 391 (482)
Q Consensus 327 ~~~~~~~~~~iyv~G-G~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~ 391 (482)
-.++-.++|.||+.- |......-+.+.+-+.....|+.+--|-.........+..++.||++|..
T Consensus 193 EPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 193 EPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp EEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-
T ss_pred cchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEecc
Confidence 345566899999985 44333445678888888999998711222334455667889999999973
No 176
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=67.81 E-value=78 Score=30.65 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=38.9
Q ss_pred CCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCC
Q psy11333 298 SGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTN 360 (482)
Q Consensus 298 ~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 360 (482)
...+.+.++++|...+.--.+..+-.+-+-+++-..++.+|++-=. ..+-.++.|..+-
T Consensus 401 ~de~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfr----qtDPlfviDlsNP 459 (603)
T COG4880 401 EDEPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFR----QTDPLFVIDLSNP 459 (603)
T ss_pred CCCccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEEEe----ccCceEEEEcCCC
Confidence 4567889999999988776666555444455555668888887532 1344666666544
No 177
>KOG0266|consensus
Probab=67.11 E-value=66 Score=32.11 Aligned_cols=105 Identities=19% Similarity=0.255 Sum_probs=60.7
Q ss_pred CCEEEEEecCCCCCCCCeEEEEeCCCC-ce-eecCCCCCCcccceeEE-EECCEEEEEeccCCCcccCeEEEEeCCCCce
Q psy11333 334 NDLLYAVGGHDGQSYLNSIERYDPQTN-QW-SCDVAPTTSCRTSVGVA-VLDGFLYAVGGQDGVQCLNHVERYDPKENKW 410 (482)
Q Consensus 334 ~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W-~~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W 410 (482)
+++ |++.|.++ .++.+||...+ .= +.+ ...+... ++++ .-.+.+++.|+.++ ++..||.++.+-
T Consensus 214 d~~-~l~s~s~D----~tiriwd~~~~~~~~~~l-~gH~~~v--~~~~f~p~g~~i~Sgs~D~-----tvriWd~~~~~~ 280 (456)
T KOG0266|consen 214 DGS-YLLSGSDD----KTLRIWDLKDDGRNLKTL-KGHSTYV--TSVAFSPDGNLLVSGSDDG-----TVRIWDVRTGEC 280 (456)
T ss_pred CCc-EEEEecCC----ceEEEeeccCCCeEEEEe-cCCCCce--EEEEecCCCCEEEEecCCC-----cEEEEeccCCeE
Confidence 555 55555443 47889999444 32 233 3334444 2332 23458999998654 688899988654
Q ss_pred eecCCCCCCccceEEEEECCEEEEEcCCCCCCCCCeEEEEeCCCCc
Q psy11333 411 SRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNR 456 (482)
Q Consensus 411 ~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~~ 456 (482)
...-.-...........-++..++.+..+ ..+.+||..+..
T Consensus 281 ~~~l~~hs~~is~~~f~~d~~~l~s~s~d-----~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 281 VRKLKGHSDGISGLAFSPDGNLLVSASYD-----GTIRVWDLETGS 321 (456)
T ss_pred EEeeeccCCceEEEEECCCCCEEEEcCCC-----ccEEEEECCCCc
Confidence 44333222222222333377788887664 468888887665
No 178
>KOG0308|consensus
Probab=66.87 E-value=60 Score=33.05 Aligned_cols=94 Identities=15% Similarity=0.326 Sum_probs=53.6
Q ss_pred CeEEEEeCCCCc-eeecCCCCCCcccceeE-E--EECCEEEEEeccCCCcccCeEEEEeCCCCc------eeec--CCCC
Q psy11333 350 NSIERYDPQTNQ-WSCDVAPTTSCRTSVGV-A--VLDGFLYAVGGQDGVQCLNHVERYDPKENK------WSRV--APMT 417 (482)
Q Consensus 350 ~~~~~yd~~~~~-W~~~~~~~~~~r~~~~~-~--~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~------W~~~--~~~~ 417 (482)
.+|-.||+..+- |-. .-+...+.+..+ + .-++.+++.||.+. .+..||.++.. -..+ .+++
T Consensus 95 tTVK~W~~~~~~~~c~--stir~H~DYVkcla~~ak~~~lvaSgGLD~-----~IflWDin~~~~~l~~s~n~~t~~sl~ 167 (735)
T KOG0308|consen 95 TTVKVWNAHKDNTFCM--STIRTHKDYVKCLAYIAKNNELVASGGLDR-----KIFLWDINTGTATLVASFNNVTVNSLG 167 (735)
T ss_pred ceEEEeecccCcchhH--hhhhcccchheeeeecccCceeEEecCCCc-----cEEEEEccCcchhhhhhccccccccCC
Confidence 468889988775 431 223334433333 3 34788999999864 46666666442 1112 2334
Q ss_pred -CCccceEEEEE--CCEEEEEcCCCCCCCCCeEEEEeCCCC
Q psy11333 418 -TRRLGVAVAVL--GGFLYAIGGSDGQSPLNTVERFDPKLN 455 (482)
Q Consensus 418 -~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~y~~~~~ 455 (482)
-++..--.... ++.+++-||.+ +++..|||.+.
T Consensus 168 sG~k~siYSLA~N~t~t~ivsGgte-----k~lr~wDprt~ 203 (735)
T KOG0308|consen 168 SGPKDSIYSLAMNQTGTIIVSGGTE-----KDLRLWDPRTC 203 (735)
T ss_pred CCCccceeeeecCCcceEEEecCcc-----cceEEeccccc
Confidence 33433223333 44688889876 46778888754
No 179
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=66.82 E-value=58 Score=31.28 Aligned_cols=101 Identities=20% Similarity=0.224 Sum_probs=56.2
Q ss_pred EEEEeCCCCceeecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCC-----CCCC--ccceE
Q psy11333 352 IERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAP-----MTTR--RLGVA 424 (482)
Q Consensus 352 ~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-----~~~~--r~~~~ 424 (482)
+..|. .+.|+.+ .. .....-.++.++|++|++.-. ..++.+|..- +=..+.+ +..+ .....
T Consensus 184 l~~w~--~~~Wt~l-~~--~~~~~~DIi~~kGkfYAvD~~------G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~y 251 (373)
T PLN03215 184 INYWD--GNVLKAL-KQ--MGYHFSDIIVHKGQTYALDSI------GIVYWINSDL-EFSRFGTSLDENITDGCWTGDRR 251 (373)
T ss_pred Eeeec--CCeeeEc-cC--CCceeeEEEEECCEEEEEcCC------CeEEEEecCC-ceeeecceecccccCCcccCcee
Confidence 43454 4899999 43 233356788999999999421 2344554221 0011111 1111 12234
Q ss_pred EEEECCEEEEEcCCCCCC------------CCCe--EEEEeCCCCceeecCCCC
Q psy11333 425 VAVLGGFLYAIGGSDGQS------------PLNT--VERFDPKLNRWTAMAPMS 464 (482)
Q Consensus 425 ~~~~~~~i~v~GG~~~~~------------~~~~--~~~y~~~~~~W~~~~~~~ 464 (482)
.+...|.|+++....... .... ++..|.+..+|.++.++.
T Consensus 252 LVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 252 FVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 566778899887742111 1123 455677788999998874
No 180
>KOG0282|consensus
Probab=66.34 E-value=34 Score=33.29 Aligned_cols=119 Identities=13% Similarity=0.192 Sum_probs=61.8
Q ss_pred ECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccc-eeEEEECCEEEEEeccCCCcccCeEEEEeCCCCcee
Q psy11333 333 LNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTS-VGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWS 411 (482)
Q Consensus 333 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~ 411 (482)
..++|++.||.+. .|+.||.-.+. +-+.+-+.....- -.+..-.|.=++..|++. .+-.||.+|.+-.
T Consensus 225 ~~~hLlLS~gmD~-----~vklW~vy~~~-~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~-----~lKlwDtETG~~~ 293 (503)
T KOG0282|consen 225 KKGHLLLSGGMDG-----LVKLWNVYDDR-RCLRTFKGHRKPVRDASFNNCGTSFLSASFDR-----FLKLWDTETGQVL 293 (503)
T ss_pred ceeeEEEecCCCc-----eEEEEEEecCc-ceehhhhcchhhhhhhhccccCCeeeeeecce-----eeeeeccccceEE
Confidence 3778999998764 57777765422 1110111111110 112233455566666643 4667888888754
Q ss_pred ecCCCCCCccceEEEEE---CCEEEEEcCCCCCCCCCeEEEEeCCCC-----------ceeecCCCCcCCCce
Q psy11333 412 RVAPMTTRRLGVAVAVL---GGFLYAIGGSDGQSPLNTVERFDPKLN-----------RWTAMAPMSTRRKHL 470 (482)
Q Consensus 412 ~~~~~~~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~y~~~~~-----------~W~~~~~~~~~r~~~ 470 (482)
.--..... ..++-. |..+|+.||.++ .|..||..++ .|..+.-.+..|.+.
T Consensus 294 ~~f~~~~~---~~cvkf~pd~~n~fl~G~sd~-----ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFi 358 (503)
T KOG0282|consen 294 SRFHLDKV---PTCVKFHPDNQNIFLVGGSDK-----KIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFI 358 (503)
T ss_pred EEEecCCC---ceeeecCCCCCcEEEEecCCC-----cEEEEeccchHHHHHHHhhhhheeeeEEccCCceEe
Confidence 32221111 112211 358999999874 4666666554 355555555555443
No 181
>PRK13684 Ycf48-like protein; Provisional
Probab=66.25 E-value=1.2e+02 Score=28.75 Aligned_cols=119 Identities=10% Similarity=0.132 Sum_probs=61.9
Q ss_pred eEEEeCCCCCeeeccCC-CCCCCceeEEEE-CCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEEC
Q psy11333 305 VERYDPQSSDWKIVAPM-SKRRCGVGVAVL-NDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLD 382 (482)
Q Consensus 305 ~~~~d~~~~~W~~~~~~-~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~ 382 (482)
+++=+-.-.+|+.+... ..+.....+..+ ++.+|+.|.. ..+++=+-.-.+|+.+ .... .-..+++....
T Consensus 111 i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~------G~i~~S~DgG~tW~~~-~~~~-~g~~~~i~~~~ 182 (334)
T PRK13684 111 LLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV------GAIYRTTDGGKNWEAL-VEDA-AGVVRNLRRSP 182 (334)
T ss_pred EEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc------ceEEEECCCCCCceeC-cCCC-cceEEEEEECC
Confidence 55555556799887532 222233333334 3456666542 2455555567899988 3222 22333444444
Q ss_pred CEEEEEeccCCCcccCeEEE-EeCCCCceeecCCCCCCccceEEEEE-CCEEEEEcC
Q psy11333 383 GFLYAVGGQDGVQCLNHVER-YDPKENKWSRVAPMTTRRLGVAVAVL-GGFLYAIGG 437 (482)
Q Consensus 383 ~~lyv~GG~~~~~~~~~~~~-yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~i~v~GG 437 (482)
+..++..|..+. ++. .|....+|+.+.. +..+...+++.. ++.++++|.
T Consensus 183 ~g~~v~~g~~G~-----i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 183 DGKYVAVSSRGN-----FYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred CCeEEEEeCCce-----EEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEec
Confidence 444444443331 222 3444567998854 444444555444 678888865
No 182
>KOG0289|consensus
Probab=64.25 E-value=1.4e+02 Score=28.90 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=60.5
Q ss_pred eeEEEeCCCCCeeeccCCCCCCCceeEEEE-CCEEEEEecCCCCCCCCeEEEEeCCCCc-eeecCCCCCCcccceeEEEE
Q psy11333 304 SVERYDPQSSDWKIVAPMSKRRCGVGVAVL-NDLLYAVGGHDGQSYLNSIERYDPQTNQ-WSCDVAPTTSCRTSVGVAVL 381 (482)
Q Consensus 304 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~r~~~~~~~~ 381 (482)
.+-+||..... ..+.+|..-....++.+ +|--|+.-+.+. ..|.+||....+ ...+ +++... ......+
T Consensus 370 ~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add----~~V~lwDLRKl~n~kt~--~l~~~~-~v~s~~f 440 (506)
T KOG0289|consen 370 VVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD----GSVKLWDLRKLKNFKTI--QLDEKK-EVNSLSF 440 (506)
T ss_pred eEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC----CeEEEEEehhhccccee--eccccc-cceeEEE
Confidence 45566766665 45555553333333333 444555544432 248999998665 2222 122211 2223333
Q ss_pred --CCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEE
Q psy11333 382 --DGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVL 428 (482)
Q Consensus 382 --~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 428 (482)
.|+..+++|. .-.++.|+.++..|+.+...+.--.-...+-+
T Consensus 441 D~SGt~L~~~g~-----~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~F 484 (506)
T KOG0289|consen 441 DQSGTYLGIAGS-----DLQVYICKKKTKSWTEIKELADHSGLSTGVRF 484 (506)
T ss_pred cCCCCeEEeecc-----eeEEEEEecccccceeeehhhhcccccceeee
Confidence 3677777763 23577888889999999876654433334444
No 183
>KOG0291|consensus
Probab=64.10 E-value=1.9e+02 Score=30.31 Aligned_cols=135 Identities=20% Similarity=0.209 Sum_probs=67.8
Q ss_pred cEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEE-ECCEEEEEecCCCCCCCCeEEEEeCCCCceeecC
Q psy11333 288 EVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAV-LNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDV 366 (482)
Q Consensus 288 ~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 366 (482)
+.-..+|+.. +-.+.+|+.++.......+--.+|.. ++++ -||.+.+-|+-++ .|-+||..+.-..---
T Consensus 319 GDWiA~g~~k----lgQLlVweWqsEsYVlKQQgH~~~i~-~l~YSpDgq~iaTG~eDg-----KVKvWn~~SgfC~vTF 388 (893)
T KOG0291|consen 319 GDWIAFGCSK----LGQLLVWEWQSESYVLKQQGHSDRIT-SLAYSPDGQLIATGAEDG-----KVKVWNTQSGFCFVTF 388 (893)
T ss_pred CCEEEEcCCc----cceEEEEEeeccceeeecccccccee-eEEECCCCcEEEeccCCC-----cEEEEeccCceEEEEe
Confidence 4444555422 33455666655555332222222322 2333 3888888888764 6889998876533110
Q ss_pred CCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEEC--CEEEEEcCCC
Q psy11333 367 APTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLG--GFLYAIGGSD 439 (482)
Q Consensus 367 ~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~--~~i~v~GG~~ 439 (482)
.....+...... ...|+..+.-..+| +|-.||.++-+--..-..|.|+. ++.+..+ |.|.+.|+.+
T Consensus 389 teHts~Vt~v~f-~~~g~~llssSLDG-----tVRAwDlkRYrNfRTft~P~p~Q-fscvavD~sGelV~AG~~d 456 (893)
T KOG0291|consen 389 TEHTSGVTAVQF-TARGNVLLSSSLDG-----TVRAWDLKRYRNFRTFTSPEPIQ-FSCVAVDPSGELVCAGAQD 456 (893)
T ss_pred ccCCCceEEEEE-EecCCEEEEeecCC-----eEEeeeecccceeeeecCCCcee-eeEEEEcCCCCEEEeeccc
Confidence 222222221111 23555565655554 35566666444322223444444 4444444 7888888754
No 184
>PRK01742 tolB translocation protein TolB; Provisional
Probab=63.96 E-value=1.6e+02 Score=29.17 Aligned_cols=138 Identities=20% Similarity=0.116 Sum_probs=67.1
Q ss_pred ceeEEEeCCCCCeeeccCCCCCCCceeEEEECCE-EEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEE
Q psy11333 303 SSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDL-LYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVL 381 (482)
Q Consensus 303 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~ 381 (482)
..++.+|..+.+-..+...+... ...+..-+|+ |++....++. -.++.+|..++..+.+ ...... .......-
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~-~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~~~~~l-t~~~~~-~~~~~wSp 301 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHN-GAPAFSPDGSRLAFASSKDGV---LNIYVMGANGGTPSQL-TSGAGN-NTEPSWSP 301 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCcc-CceeECCCCCEEEEEEecCCc---EEEEEEECCCCCeEee-ccCCCC-cCCEEECC
Confidence 46899999887665555443211 1111123554 4443333321 3588899988887777 322211 11222333
Q ss_pred CCE-EEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECC-EEEEEcCCCCCCCCCeEEEEeCCCCceee
Q psy11333 382 DGF-LYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGG-FLYAIGGSDGQSPLNTVERFDPKLNRWTA 459 (482)
Q Consensus 382 ~~~-lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~y~~~~~~W~~ 459 (482)
+|+ |+......+ ...++.+|..+..-..+.. ... .....-+| .|++.++ ..+..+|..+.++..
T Consensus 302 DG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~~---~~~-~~~~SpDG~~ia~~~~-------~~i~~~Dl~~g~~~~ 367 (429)
T PRK01742 302 DGQSILFTSDRSG---SPQVYRMSASGGGASLVGG---RGY-SAQISADGKTLVMING-------DNVVKQDLTSGSTEV 367 (429)
T ss_pred CCCEEEEEECCCC---CceEEEEECCCCCeEEecC---CCC-CccCCCCCCEEEEEcC-------CCEEEEECCCCCeEE
Confidence 555 444432222 2467777765543332211 111 11122244 4544443 246678887777665
Q ss_pred c
Q psy11333 460 M 460 (482)
Q Consensus 460 ~ 460 (482)
+
T Consensus 368 l 368 (429)
T PRK01742 368 L 368 (429)
T ss_pred e
Confidence 4
No 185
>KOG0279|consensus
Probab=62.81 E-value=1.2e+02 Score=27.56 Aligned_cols=102 Identities=14% Similarity=0.181 Sum_probs=59.7
Q ss_pred CEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCccc-ceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeec
Q psy11333 335 DLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRT-SVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRV 413 (482)
Q Consensus 335 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~-~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 413 (482)
+-+.+-+|.+ ++|-+||..+-+-+.- -.....+ ....+.-+|.+.+.||.++ .+..+|+...+- +
T Consensus 162 ~p~Ivs~s~D-----ktvKvWnl~~~~l~~~--~~gh~~~v~t~~vSpDGslcasGgkdg-----~~~LwdL~~~k~--l 227 (315)
T KOG0279|consen 162 NPIIVSASWD-----KTVKVWNLRNCQLRTT--FIGHSGYVNTVTVSPDGSLCASGGKDG-----EAMLWDLNEGKN--L 227 (315)
T ss_pred CcEEEEccCC-----ceEEEEccCCcchhhc--cccccccEEEEEECCCCCEEecCCCCc-----eEEEEEccCCce--e
Confidence 4566666765 4788999988764322 1112222 2233456899999999765 356677664432 3
Q ss_pred CCCCCCccceEEEEECCEEEEEcCCCCCCCCCeEEEEeCCCC
Q psy11333 414 APMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLN 455 (482)
Q Consensus 414 ~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~ 455 (482)
-.+...--.++++...++.+++-+... .|-++|.+++
T Consensus 228 ysl~a~~~v~sl~fspnrywL~~at~~-----sIkIwdl~~~ 264 (315)
T KOG0279|consen 228 YSLEAFDIVNSLCFSPNRYWLCAATAT-----SIKIWDLESK 264 (315)
T ss_pred EeccCCCeEeeEEecCCceeEeeccCC-----ceEEEeccch
Confidence 333333344566666777777766532 3666665544
No 186
>KOG4378|consensus
Probab=62.58 E-value=1.6e+02 Score=29.27 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=55.7
Q ss_pred CCEEEEEecCCCCCCCCeEEEEeCCCCc----eeecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCc
Q psy11333 334 NDLLYAVGGHDGQSYLNSIERYDPQTNQ----WSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENK 409 (482)
Q Consensus 334 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~----W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~ 409 (482)
..++..+.|.++ .|..||...+. |.+. - ..|-.+.+..-.+..|+|.-|++ ..+..||....+
T Consensus 176 kr~lL~~asd~G-----~VtlwDv~g~sp~~~~~~~-H--sAP~~gicfspsne~l~vsVG~D-----kki~~yD~~s~~ 242 (673)
T KOG4378|consen 176 KRFLLSIASDKG-----AVTLWDVQGMSPIFHASEA-H--SAPCRGICFSPSNEALLVSVGYD-----KKINIYDIRSQA 242 (673)
T ss_pred cceeeEeeccCC-----eEEEEeccCCCcccchhhh-c--cCCcCcceecCCccceEEEeccc-----ceEEEeeccccc
Confidence 344555555433 57888877654 5544 1 22333455566788899988875 468889887543
Q ss_pred eeecCCCCCCccceEEEEE-CCEEEEEcCCCCCCCCCeEEEEeCCC
Q psy11333 410 WSRVAPMTTRRLGVAVAVL-GGFLYAIGGSDGQSPLNTVERFDPKL 454 (482)
Q Consensus 410 W~~~~~~~~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~y~~~~ 454 (482)
=+..-.-..|. .+++.. +|.+++.|...| .++.||...
T Consensus 243 s~~~l~y~~Pl--stvaf~~~G~~L~aG~s~G-----~~i~YD~R~ 281 (673)
T KOG4378|consen 243 STDRLTYSHPL--STVAFSECGTYLCAGNSKG-----ELIAYDMRS 281 (673)
T ss_pred ccceeeecCCc--ceeeecCCceEEEeecCCc-----eEEEEeccc
Confidence 22211111111 133333 556666665543 577787653
No 187
>KOG0296|consensus
Probab=61.98 E-value=1.5e+02 Score=28.15 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=75.0
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCce--eEEEECCEEEEEecCCCCCCCCeEEEEeCCCC--ce
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGV--GVAVLNDLLYAVGGHDGQSYLNSIERYDPQTN--QW 362 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W 362 (482)
++.+.+.||-. +.-+.++..+..|- ..++-..-.. ....+++-+.+-||.++ .+.+|...++ +|
T Consensus 75 ~~~l~aTGGgD-----D~AflW~~~~ge~~--~eltgHKDSVt~~~FshdgtlLATGdmsG-----~v~v~~~stg~~~~ 142 (399)
T KOG0296|consen 75 NNNLVATGGGD-----DLAFLWDISTGEFA--GELTGHKDSVTCCSFSHDGTLLATGDMSG-----KVLVFKVSTGGEQW 142 (399)
T ss_pred CCceEEecCCC-----ceEEEEEccCCcce--eEecCCCCceEEEEEccCceEEEecCCCc-----cEEEEEcccCceEE
Confidence 57888888844 34577888888863 2222222222 22335888888888664 4556655544 45
Q ss_pred eecCCCCCCc--ccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECCEEEEEcCCCC
Q psy11333 363 SCDVAPTTSC--RTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDG 440 (482)
Q Consensus 363 ~~~~~~~~~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~ 440 (482)
+-. .++..- ..+|- .+.+++.|-.++ .+|+|...+..-.++-+-+..+...+-..-+|+..+.|-.+
T Consensus 143 ~~~-~e~~dieWl~WHp----~a~illAG~~DG-----svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d- 211 (399)
T KOG0296|consen 143 KLD-QEVEDIEWLKWHP----RAHILLAGSTDG-----SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD- 211 (399)
T ss_pred Eee-cccCceEEEEecc----cccEEEeecCCC-----cEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC-
Confidence 533 111100 00111 235666665433 57888877643322222233333333334467766666543
Q ss_pred CCCCCeEEEEeCCCCc
Q psy11333 441 QSPLNTVERFDPKLNR 456 (482)
Q Consensus 441 ~~~~~~~~~y~~~~~~ 456 (482)
.++.++||++.+
T Consensus 212 ----gti~~Wn~ktg~ 223 (399)
T KOG0296|consen 212 ----GTIIVWNPKTGQ 223 (399)
T ss_pred ----ceEEEEecCCCc
Confidence 468888887653
No 188
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=61.65 E-value=61 Score=31.16 Aligned_cols=134 Identities=16% Similarity=0.077 Sum_probs=59.3
Q ss_pred CCCceeEEEeCCCCCeeeccCCCCCCCceeEE-EECCEEEEE---ecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccc
Q psy11333 300 DAISSVERYDPQSSDWKIVAPMSKRRCGVGVA-VLNDLLYAV---GGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTS 375 (482)
Q Consensus 300 ~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~-~~~~~iyv~---GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~ 375 (482)
.+...+...|..+.+.+.+-.-..- .+|--. ..+..+..+ |.++. ....+|..|......+.+...++....+
T Consensus 165 ~p~~~i~~idl~tG~~~~v~~~~~w-lgH~~fsP~dp~li~fCHEGpw~~--Vd~RiW~i~~dg~~~~~v~~~~~~e~~g 241 (386)
T PF14583_consen 165 RPHCRIFTIDLKTGERKVVFEDTDW-LGHVQFSPTDPTLIMFCHEGPWDL--VDQRIWTINTDGSNVKKVHRRMEGESVG 241 (386)
T ss_dssp ---EEEEEEETTT--EEEEEEESS--EEEEEEETTEEEEEEEEE-S-TTT--SS-SEEEEETTS---EESS---TTEEEE
T ss_pred CCCceEEEEECCCCceeEEEecCcc-ccCcccCCCCCCEEEEeccCCcce--eceEEEEEEcCCCcceeeecCCCCcccc
Confidence 3444566666666665443221110 112211 123444333 33332 2237899998877666663333333334
Q ss_pred eeEEEECCE-EEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECCEEEEEcCCC
Q psy11333 376 VGVAVLDGF-LYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSD 439 (482)
Q Consensus 376 ~~~~~~~~~-lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~ 439 (482)
|=..+.+|. |+..+...+ +...-+..||+.|..=+.+..| |++.|-+...+|++++--|.+
T Consensus 242 HEfw~~DG~~i~y~~~~~~-~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTPG-GQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEE-TTSS-EEEEEEETT-T--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE--
T ss_pred cccccCCCCEEEEEeecCC-CCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCC
Confidence 444444554 444443332 2233577899998754445444 457888888899999887754
No 189
>KOG2048|consensus
Probab=61.00 E-value=2e+02 Score=29.56 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=34.8
Q ss_pred CceeEEEeCCCCCeeecc--CCCCCCCceeEEEE-CCEEEEEecCCCCCCCCeEEEEeCCCCc
Q psy11333 302 ISSVERYDPQSSDWKIVA--PMSKRRCGVGVAVL-NDLLYAVGGHDGQSYLNSIERYDPQTNQ 361 (482)
Q Consensus 302 ~~~~~~~d~~~~~W~~~~--~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 361 (482)
...++.||+.. .|-..+ ..|..|.--+.+-. ++.|+-+|+.+ .+--||+.+.+
T Consensus 46 ~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg------~i~EwDl~~lk 101 (691)
T KOG2048|consen 46 DGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSG------SITEWDLHTLK 101 (691)
T ss_pred CCcEEEEccCC-CceeeEEEecCCCCceeeEEEccCCeEEeecCCc------eEEEEecccCc
Confidence 34689999988 675443 44566665566665 88999998753 35556655443
No 190
>PRK02889 tolB translocation protein TolB; Provisional
Probab=60.40 E-value=1.8e+02 Score=28.71 Aligned_cols=147 Identities=11% Similarity=0.001 Sum_probs=69.9
Q ss_pred CceeEEEeCCCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEE
Q psy11333 302 ISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVL 381 (482)
Q Consensus 302 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~ 381 (482)
...++..|........+..-+.+-... ...-+++-.++..... ....++.+|..+++=+.+ ...+. ........-
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p-~wSPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l-~~~~g-~~~~~~~SP 249 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISP-AWSPDGTKLAYVSFES--KKPVVYVHDLATGRRRVV-ANFKG-SNSAPAWSP 249 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccc-eEcCCCCEEEEEEccC--CCcEEEEEECCCCCEEEe-ecCCC-CccceEECC
Confidence 356888888665544433222211111 1112454333333221 124699999988865555 32221 111222233
Q ss_pred CC-EEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECC-EEEEEcCCCCCCCCCeEEEEeCCCCceee
Q psy11333 382 DG-FLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGG-FLYAIGGSDGQSPLNTVERFDPKLNRWTA 459 (482)
Q Consensus 382 ~~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~y~~~~~~W~~ 459 (482)
+| +|++....++ ...++.+|..+.....+..-.. ........-+| +|++.+...+ ...++.++..+.+.+.
T Consensus 250 DG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~ 322 (427)
T PRK02889 250 DGRTLAVALSRDG---NSQIYTVNADGSGLRRLTQSSG-IDTEPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQR 322 (427)
T ss_pred CCCEEEEEEccCC---CceEEEEECCCCCcEECCCCCC-CCcCeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEE
Confidence 44 5554443333 2578888887776655543211 11111222245 4554433222 2467777776665554
Q ss_pred c
Q psy11333 460 M 460 (482)
Q Consensus 460 ~ 460 (482)
+
T Consensus 323 l 323 (427)
T PRK02889 323 V 323 (427)
T ss_pred E
Confidence 4
No 191
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=60.09 E-value=1.3e+02 Score=27.34 Aligned_cols=191 Identities=13% Similarity=0.142 Sum_probs=90.0
Q ss_pred CCcEEEEec--cccCC--CCCceeEEEeC-CCCCeeeccCCCCC------CCcee--EEEECCEEEEEecCCC-CCCCCe
Q psy11333 286 RGEVLFAVG--GWCSG--DAISSVERYDP-QSSDWKIVAPMSKR------RCGVG--VAVLNDLLYAVGGHDG-QSYLNS 351 (482)
Q Consensus 286 ~~~~l~~~G--G~~~~--~~~~~~~~~d~-~~~~W~~~~~~~~~------~~~~~--~~~~~~~iyv~GG~~~-~~~~~~ 351 (482)
.++.|+++- +.... ......+.... ...+|.....++.. ..... +..-+|.+++.. +.. ......
T Consensus 57 ~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~-~~~~~~~~~~ 135 (275)
T PF13088_consen 57 PDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPY-YHESGGSFSA 135 (275)
T ss_dssp TTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEE-EEESSCEEEE
T ss_pred CCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEE-eeccccCcce
Confidence 367887775 22211 11111123333 35789765433211 11222 233488888762 111 111223
Q ss_pred EEEEeCC-CCceeecCCCCC-Ccccc-eeEEE-ECCEEEEEeccCCCcccCeEEEEeCC-CCceeecC--CCCCCccceE
Q psy11333 352 IERYDPQ-TNQWSCDVAPTT-SCRTS-VGVAV-LDGFLYAVGGQDGVQCLNHVERYDPK-ENKWSRVA--PMTTRRLGVA 424 (482)
Q Consensus 352 ~~~yd~~-~~~W~~~~~~~~-~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~yd~~-~~~W~~~~--~~~~~r~~~~ 424 (482)
...|... ..+|+.. .+.+ ..... .+.+. -+|+|+++--..... .....+... -.+|+... .+|.+.....
T Consensus 136 ~~~~S~D~G~tW~~~-~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~~--~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~ 212 (275)
T PF13088_consen 136 FVYYSDDGGKTWSSG-SPIPDGQGECEPSIVELPDGRLLAVFRTEGND--DIYISRSTDGGRTWSPPQPTNLPNPNSSIS 212 (275)
T ss_dssp EEEEESSTTSSEEEE-EECECSEEEEEEEEEEETTSEEEEEEEECSST--EEEEEEESSTTSS-EEEEEEECSSCCEEEE
T ss_pred EEEEeCCCCceeecc-ccccccCCcceeEEEECCCCcEEEEEEccCCC--cEEEEEECCCCCcCCCceecccCcccCCce
Confidence 4445554 5569877 4442 22332 33333 368899886442111 223334333 44798865 4566665555
Q ss_pred EEEE-CCEEEEEcCCCCCCCCCeEEEEeCCCCceeecCCCCcCC----CceeEEEEc-CCCC
Q psy11333 425 VAVL-GGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRR----KHLGCAVFV-GDNG 480 (482)
Q Consensus 425 ~~~~-~~~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~~~~~~~r----~~~~~~~~~-~~~~ 480 (482)
++.. +++++++.+.......-.+..-.....+|.....+.... .+..++... |+|+
T Consensus 213 ~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~ 274 (275)
T PF13088_consen 213 LVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLY 274 (275)
T ss_dssp EEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEE
T ss_pred EEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCC
Confidence 5554 668888877321111112222222367898776554433 455566664 3543
No 192
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=59.62 E-value=98 Score=29.90 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=77.3
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEEE-CCEEEEEecCCCCCCCCeEEEEeCCCCcee-e
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVL-NDLLYAVGGHDGQSYLNSIERYDPQTNQWS-C 364 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~ 364 (482)
+..+|+.+. + ..+..+|+.+++ .+...+.+....++++. +|+..+++.+. .+++.++|.++.+=. .
T Consensus 48 gr~~yv~~r-d-----g~vsviD~~~~~--~v~~i~~G~~~~~i~~s~DG~~~~v~n~~----~~~v~v~D~~tle~v~~ 115 (369)
T PF02239_consen 48 GRYLYVANR-D-----GTVSVIDLATGK--VVATIKVGGNPRGIAVSPDGKYVYVANYE----PGTVSVIDAETLEPVKT 115 (369)
T ss_dssp SSEEEEEET-T-----SEEEEEETTSSS--EEEEEE-SSEEEEEEE--TTTEEEEEEEE----TTEEEEEETTT--EEEE
T ss_pred CCEEEEEcC-C-----CeEEEEECCccc--EEEEEecCCCcceEEEcCCCCEEEEEecC----CCceeEeccccccceee
Confidence 567888853 1 368899999988 34444555555565553 66655555443 357889999887533 2
Q ss_pred cC-CCC----CCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEEC-CEEEEEcCC
Q psy11333 365 DV-APT----TSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLG-GFLYAIGGS 438 (482)
Q Consensus 365 ~~-~~~----~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~-~~i~v~GG~ 438 (482)
++ ..+ +.+|-..-.....+..|++--.+ ...++..|....+=.....+..++..|.+..-. ++.|+.+ .
T Consensus 116 I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd----~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va-~ 190 (369)
T PF02239_consen 116 IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD----TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVA-A 190 (369)
T ss_dssp EE--EE-TTTS---EEEEEE-SSSSEEEEEETT----TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEE-E
T ss_pred cccccccccccCCCceeEEecCCCCEEEEEEcc----CCeEEEEEeccccccceeeecccccccccccCcccceeeec-c
Confidence 21 111 22333222233455556664332 246777776544222223344566666665553 4444443 2
Q ss_pred CCCCCCCeEEEEeCCCCce
Q psy11333 439 DGQSPLNTVERFDPKLNRW 457 (482)
Q Consensus 439 ~~~~~~~~~~~y~~~~~~W 457 (482)
++ .+.+-..|.++++-
T Consensus 191 ~~---sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 191 NG---SNKIAVIDTKTGKL 206 (369)
T ss_dssp GG---GTEEEEEETTTTEE
T ss_pred cc---cceeEEEeeccceE
Confidence 22 24777888776643
No 193
>KOG0291|consensus
Probab=59.49 E-value=2.3e+02 Score=29.75 Aligned_cols=142 Identities=19% Similarity=0.224 Sum_probs=79.0
Q ss_pred CCcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEEE--CCEEEEEecCCCCCCCCeEEEEeCCCCc-e
Q psy11333 286 RGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVL--NDLLYAVGGHDGQSYLNSIERYDPQTNQ-W 362 (482)
Q Consensus 286 ~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W 362 (482)
.++.+.+.|+.+ ..|-.||....--- -....+..++++..+ .++..+....++ +|-.||...-+ +
T Consensus 360 pDgq~iaTG~eD-----gKVKvWn~~SgfC~--vTFteHts~Vt~v~f~~~g~~llssSLDG-----tVRAwDlkRYrNf 427 (893)
T KOG0291|consen 360 PDGQLIATGAED-----GKVKVWNTQSGFCF--VTFTEHTSGVTAVQFTARGNVLLSSSLDG-----TVRAWDLKRYRNF 427 (893)
T ss_pred CCCcEEEeccCC-----CcEEEEeccCceEE--EEeccCCCceEEEEEEecCCEEEEeecCC-----eEEeeeeccccee
Confidence 467777777754 24566666554321 112223334443332 555555555443 67888887554 3
Q ss_pred eecCCCCCCcccceeEEEEC--CEEEEEeccCCCcccCeEEEEeCCCCceeecC-CCCCCccceEEEEECCEEEEEcCCC
Q psy11333 363 SCDVAPTTSCRTSVGVAVLD--GFLYAVGGQDGVQCLNHVERYDPKENKWSRVA-PMTTRRLGVAVAVLGGFLYAIGGSD 439 (482)
Q Consensus 363 ~~~~~~~~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~~~~~i~v~GG~~ 439 (482)
+.. ..+.|..++++..+ |.|..+|+.+. -.+++|+..|.+--.+- ...-|..+-+. ...+.+.+-|-++
T Consensus 428 RTf---t~P~p~QfscvavD~sGelV~AG~~d~----F~IfvWS~qTGqllDiLsGHEgPVs~l~f-~~~~~~LaS~SWD 499 (893)
T KOG0291|consen 428 RTF---TSPEPIQFSCVAVDPSGELVCAGAQDS----FEIFVWSVQTGQLLDILSGHEGPVSGLSF-SPDGSLLASGSWD 499 (893)
T ss_pred eee---cCCCceeeeEEEEcCCCCEEEeeccce----EEEEEEEeecCeeeehhcCCCCcceeeEE-ccccCeEEecccc
Confidence 333 12244456666666 99999998754 36888888888754433 22233332222 2345566666665
Q ss_pred CCCCCCeEEEEeC
Q psy11333 440 GQSPLNTVERFDP 452 (482)
Q Consensus 440 ~~~~~~~~~~y~~ 452 (482)
+++.++|.
T Consensus 500 -----kTVRiW~i 507 (893)
T KOG0291|consen 500 -----KTVRIWDI 507 (893)
T ss_pred -----ceEEEEEe
Confidence 45666665
No 194
>KOG0266|consensus
Probab=58.82 E-value=2e+02 Score=28.73 Aligned_cols=92 Identities=17% Similarity=0.245 Sum_probs=52.0
Q ss_pred ceeEEEeCCCC-C-eeeccCCCCCCCceeEEE-ECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCccccee--
Q psy11333 303 SSVERYDPQSS-D-WKIVAPMSKRRCGVGVAV-LNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVG-- 377 (482)
Q Consensus 303 ~~~~~~d~~~~-~-W~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~-- 377 (482)
..+.++|...+ . -..+....... ++++. -.+.+++.|+.++ +|..||..+.+-.+. +......-.
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D~-----tvriWd~~~~~~~~~---l~~hs~~is~~ 294 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDDG-----TVRIWDVRTGECVRK---LKGHSDGISGL 294 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCCC-----cEEEEeccCCeEEEe---eeccCCceEEE
Confidence 35677777333 2 22222222222 33333 3568899998764 799999999654433 221221222
Q ss_pred EEEECCEEEEEeccCCCcccCeEEEEeCCCCc
Q psy11333 378 VAVLDGFLYAVGGQDGVQCLNHVERYDPKENK 409 (482)
Q Consensus 378 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~ 409 (482)
...-++.+++.+..+ ..+..||..+..
T Consensus 295 ~f~~d~~~l~s~s~d-----~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 295 AFSPDGNLLVSASYD-----GTIRVWDLETGS 321 (456)
T ss_pred EECCCCCEEEEcCCC-----ccEEEEECCCCc
Confidence 223367778787653 357889988766
No 195
>KOG0274|consensus
Probab=58.65 E-value=1.7e+02 Score=29.90 Aligned_cols=131 Identities=20% Similarity=0.304 Sum_probs=67.7
Q ss_pred eeEEEeCCCCCeeeccCCCCCCCcee-EEEECC-EEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEE
Q psy11333 304 SVERYDPQSSDWKIVAPMSKRRCGVG-VAVLND-LLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVL 381 (482)
Q Consensus 304 ~~~~~d~~~~~W~~~~~~~~~~~~~~-~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~ 381 (482)
.|-++|+.+.+- +..+. +..+.. ...+++ ...+-|+.+ ..+..||+.+.. +-+ -.+..+...-.....
T Consensus 352 ~v~VW~~~~~~c--l~sl~-gH~~~V~sl~~~~~~~~~Sgs~D-----~~IkvWdl~~~~-~c~-~tl~~h~~~v~~l~~ 421 (537)
T KOG0274|consen 352 TVKVWDPRTGKC--LKSLS-GHTGRVYSLIVDSENRLLSGSLD-----TTIKVWDLRTKR-KCI-HTLQGHTSLVSSLLL 421 (537)
T ss_pred eEEEEEhhhcee--eeeec-CCcceEEEEEecCcceEEeeeec-----cceEeecCCchh-hhh-hhhcCCccccccccc
Confidence 466677774443 22221 122111 123466 566666655 468899998884 212 112222211122344
Q ss_pred CCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECCEEEEEcCCCCCCCCCeEEEEeCCCC
Q psy11333 382 DGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLN 455 (482)
Q Consensus 382 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~ 455 (482)
.++.++.++.++ .+..||.++..-...-.-+ ......+........+..+.++ .+..||..+.
T Consensus 422 ~~~~Lvs~~aD~-----~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~~~~il~s~~~~-----~~~l~dl~~~ 484 (537)
T KOG0274|consen 422 RDNFLVSSSADG-----TIKLWDAEEGECLRTLEGR-HVGGVSALALGKEEILCSSDDG-----SVKLWDLRSG 484 (537)
T ss_pred ccceeEeccccc-----cEEEeecccCceeeeeccC-CcccEEEeecCcceEEEEecCC-----eeEEEecccC
Confidence 567777776543 6778888877765544333 2233333333346666766653 4666666544
No 196
>PRK04043 tolB translocation protein TolB; Provisional
Probab=57.73 E-value=2e+02 Score=28.38 Aligned_cols=147 Identities=6% Similarity=-0.074 Sum_probs=81.9
Q ss_pred ceeEEEeCCCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEEC
Q psy11333 303 SSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLD 382 (482)
Q Consensus 303 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~ 382 (482)
..+|.+|..+..+.++...+..-....-..-+.+||......+ ...++.+|..+++.+++ ..- +.... ...-+
T Consensus 257 ~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rl-t~~--g~~~~-~~SPD 329 (419)
T PRK04043 257 PDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQV-VFH--GKNNS-SVSTY 329 (419)
T ss_pred cEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC---CceEEEEECCCCCeEeC-ccC--CCcCc-eECCC
Confidence 5799999999999887654431111111112446777654322 35799999999998877 321 21222 33334
Q ss_pred CE-EEEEeccCCCc---ccCeEEEEeCCCCceeecCCCCCCccceEEEEECCE-EEEEcCCCCCCCCCeEEEEeCCCCce
Q psy11333 383 GF-LYAVGGQDGVQ---CLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGF-LYAIGGSDGQSPLNTVERFDPKLNRW 457 (482)
Q Consensus 383 ~~-lyv~GG~~~~~---~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~y~~~~~~W 457 (482)
|+ |.......... ....++.+|+.+..+..+.... ........-||+ |+......+ ...++.++...+.=
T Consensus 330 G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~--~~~~p~~SPDG~~I~f~~~~~~---~~~L~~~~l~g~~~ 404 (419)
T PRK04043 330 KNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG--VNQFPRFSSDGGSIMFIKYLGN---QSALGIIRLNYNKS 404 (419)
T ss_pred CCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC--CcCCeEECCCCCEEEEEEccCC---cEEEEEEecCCCee
Confidence 54 44333322111 2357899999999998887532 222222333554 555543322 24678888776543
Q ss_pred eecC
Q psy11333 458 TAMA 461 (482)
Q Consensus 458 ~~~~ 461 (482)
..++
T Consensus 405 ~~l~ 408 (419)
T PRK04043 405 FLFP 408 (419)
T ss_pred EEee
Confidence 3343
No 197
>KOG4682|consensus
Probab=57.65 E-value=2.9 Score=39.43 Aligned_cols=76 Identities=22% Similarity=0.315 Sum_probs=52.5
Q ss_pred HHHHHHhcCCCCcCccceEEE-ccCCHHHHHHHHHHhhcCee-eeccccHhhHHHHhcccChhhHHHHHHHHHhccCC
Q psy11333 61 PYFRAMFTGELAESRQAEVTI-RDIDDVAMDNLIEFCYTSHI-TVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLD 136 (482)
Q Consensus 61 ~~F~~~~~~~~~e~~~~~i~l-~~~~~~~~~~~l~~~y~~~~-~~~~~~~~~ll~~a~~~~~~~L~~~~~~~i~~~~~ 136 (482)
..|..||..+..+....++-+ ..++..+++-+++-|-.--+ .++++++...+++|.+|++..+++.|.+.+..++-
T Consensus 126 ~a~gsLY~dEveI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~ 203 (488)
T KOG4682|consen 126 VAFGSLYRDEVEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLM 203 (488)
T ss_pred HHHhhhhhhheeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhH
Confidence 456677766544333322111 23445556666666654322 78999999999999999999999999999987764
No 198
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=56.35 E-value=1.7e+02 Score=27.27 Aligned_cols=132 Identities=20% Similarity=0.265 Sum_probs=62.9
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCCCeeecc-CCCCCCCceeEEEE-CCEEEEEecCCCCCCCCeEEEEeCCCCceee
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVA-PMSKRRCGVGVAVL-NDLLYAVGGHDGQSYLNSIERYDPQTNQWSC 364 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 364 (482)
++..|++|.. ..++.-.-.-.+|+.++ +.+.|...+.+..+ ++.++++|.. ..+++=.-.-.+|+.
T Consensus 71 ~~~g~ivG~~------g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~------G~iy~T~DgG~tW~~ 138 (302)
T PF14870_consen 71 GNEGWIVGEP------GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR------GAIYRTTDGGKTWQA 138 (302)
T ss_dssp TTEEEEEEET------TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--------EEEESSTTSSEEE
T ss_pred CCceEEEcCC------ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC------CcEEEeCCCCCCeeE
Confidence 5677887641 13555666778999876 23444444555554 5567777643 246666667778998
Q ss_pred cCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECCEEEEEc
Q psy11333 365 DVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIG 436 (482)
Q Consensus 365 ~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~G 436 (482)
+ ......-.......-+|++++++. .+ +-....|+-...|.........|.......-++.|+++.
T Consensus 139 ~-~~~~~gs~~~~~r~~dG~~vavs~-~G----~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 139 V-VSETSGSINDITRSSDGRYVAVSS-RG----NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA 204 (302)
T ss_dssp E-E-S----EEEEEE-TTS-EEEEET-TS----SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE
T ss_pred c-ccCCcceeEeEEECCCCcEEEEEC-cc----cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe
Confidence 7 322222111222234667555553 23 224467888888987765444444333333466776664
No 199
>PTZ00420 coronin; Provisional
Probab=55.68 E-value=2.5e+02 Score=28.96 Aligned_cols=104 Identities=14% Similarity=0.198 Sum_probs=52.5
Q ss_pred CEEEEEecCCCCCCCCeEEEEeCCCCc--eeecCCC---CCCcccceeEEEE---CCEEEEEeccCCCcccCeEEEEeCC
Q psy11333 335 DLLYAVGGHDGQSYLNSIERYDPQTNQ--WSCDVAP---TTSCRTSVGVAVL---DGFLYAVGGQDGVQCLNHVERYDPK 406 (482)
Q Consensus 335 ~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~---~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~yd~~ 406 (482)
+.+.+.||.++ ++.+||..+.. -..+..+ +.........+.+ +..+++.||.+ ..+..||+.
T Consensus 87 ~~lLASgS~Dg-----tIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D-----gtIrIWDl~ 156 (568)
T PTZ00420 87 SEILASGSEDL-----TIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD-----SFVNIWDIE 156 (568)
T ss_pred CCEEEEEeCCC-----eEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC-----CeEEEEECC
Confidence 56778887654 68889876532 1111001 1101111122222 23455667654 357788987
Q ss_pred CCceeecCCCCCCccceEEE-EECCEEEEEcCCCCCCCCCeEEEEeCCCC
Q psy11333 407 ENKWSRVAPMTTRRLGVAVA-VLGGFLYAIGGSDGQSPLNTVERFDPKLN 455 (482)
Q Consensus 407 ~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~y~~~~~ 455 (482)
+.+=. ..+..+....++. ..+|.+++.|+.+ +.+.+||+.+.
T Consensus 157 tg~~~--~~i~~~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg 199 (568)
T PTZ00420 157 NEKRA--FQINMPKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQ 199 (568)
T ss_pred CCcEE--EEEecCCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCC
Confidence 66411 1111111222222 2377888877754 46888998765
No 200
>KOG3545|consensus
Probab=55.64 E-value=1.5e+02 Score=26.46 Aligned_cols=149 Identities=16% Similarity=0.270 Sum_probs=82.2
Q ss_pred eeEEEeCCCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeC----CCCceeecCCCCCCcccceeEE
Q psy11333 304 SVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDP----QTNQWSCDVAPTTSCRTSVGVA 379 (482)
Q Consensus 304 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~----~~~~W~~~~~~~~~~r~~~~~~ 379 (482)
.+.........|.+ .++|. ++++|+..+..+ ..+.-|.. ....|... -.+|.+..+.+-+
T Consensus 11 ~~~~~~~~~GsWmr-Dpl~~----------~~r~~~~~~~~~----~~l~E~~~~~~~~~~~~~~~-~~lp~~~~gTg~V 74 (249)
T KOG3545|consen 11 TVKTAGPRFGAWMR-DPLPA----------DDRIYVMNYFDG----LMLTEYTNLEDFKRGRKAEK-YRLPYSWDGTGHV 74 (249)
T ss_pred EEEeeccccceeec-CCCcc----------cCceEEeccccC----ceEEEeccHHHhhccCcceE-EeCCCCccccceE
Confidence 34455556677854 23222 778888854433 34445544 34456555 5678888888999
Q ss_pred EECCEEEEEeccCCCcccCeEEEEeCCCC---ceeecCCCCCC---------ccceEEEEECCEEEEEcCCCCCCCCCeE
Q psy11333 380 VLDGFLYAVGGQDGVQCLNHVERYDPKEN---KWSRVAPMTTR---------RLGVAVAVLGGFLYAIGGSDGQSPLNTV 447 (482)
Q Consensus 380 ~~~~~lyv~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~~~~---------r~~~~~~~~~~~i~v~GG~~~~~~~~~~ 447 (482)
+++|.+|.-.+. +..+.+||+.+. .|..++.+... -...-.++-..-|+++=-..+....--+
T Consensus 75 VynGs~yynk~~-----t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~ 149 (249)
T KOG3545|consen 75 VYNGSLYYNKAG-----TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVL 149 (249)
T ss_pred EEcceEEeeccC-----CcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEe
Confidence 999999987642 467889999873 46666533111 1122234445556666443322222224
Q ss_pred EEEeCC----CCceeecCCCCcCCCceeEEEE
Q psy11333 448 ERFDPK----LNRWTAMAPMSTRRKHLGCAVF 475 (482)
Q Consensus 448 ~~y~~~----~~~W~~~~~~~~~r~~~~~~~~ 475 (482)
-+.||. ..+|.. .++..+.+.+-.++
T Consensus 150 skLdp~tl~~e~tW~T--~~~k~~~~~aF~iC 179 (249)
T KOG3545|consen 150 SKLDPETLEVERTWNT--TLPKRSAGNAFMIC 179 (249)
T ss_pred eccCHHHhheeeeecc--ccCCCCcCceEEEe
Confidence 667773 345644 33344444343333
No 201
>KOG1778|consensus
Probab=54.76 E-value=6.1 Score=36.78 Aligned_cols=131 Identities=21% Similarity=0.243 Sum_probs=90.7
Q ss_pred CCeEEeceeEEeeccCHHHHHHhcCCCCcCccceEEEccCCHHHHHHHHHHhhcCeeeeccc--cHhhHHHHhcccChhh
Q psy11333 45 GARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEES--NVQTLLPAACLLQLVE 122 (482)
Q Consensus 45 ~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~y~~~~~~~~~--~~~~ll~~a~~~~~~~ 122 (482)
.+..+.+|+.+|...|+.|..+....-..+....+.+.......+..+.++.|.. ..-... ..+-++.+...+.++.
T Consensus 34 ~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~~~~v~~ 112 (319)
T KOG1778|consen 34 VKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSHVYVVPQ 112 (319)
T ss_pred hhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhhhhhhccC
Confidence 4566999999999999999887655422223334667777888899999999987 222221 2234455556677777
Q ss_pred HHHHHHHHHhc-cCCCCCHHHHHHHHhhCCCHHHHHHHHHHHHHhHHHHhccccc
Q psy11333 123 IQDICCEFLKR-QLDPSNCLGIRAFADTHSCRDLLRIADKFTQHNFQEVMESEEF 176 (482)
Q Consensus 123 L~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~i~~~~~~l~~~~~f 176 (482)
++..+...+.. .++..+++..+..+..+....|..+....+...|....++..+
T Consensus 113 ~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~ 167 (319)
T KOG1778|consen 113 PKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKW 167 (319)
T ss_pred ccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCc
Confidence 77666666654 3444578888888888888889888888888777776664443
No 202
>KOG0315|consensus
Probab=54.66 E-value=1.3e+02 Score=27.02 Aligned_cols=93 Identities=22% Similarity=0.228 Sum_probs=51.2
Q ss_pred EEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCC
Q psy11333 336 LLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAP 415 (482)
Q Consensus 336 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 415 (482)
.|.+..|++ .++-.|...++...+- -+-+...-..-...-+++..+.+|. ..+-.||..++.=..+..
T Consensus 11 viLvsA~YD-----hTIRfWqa~tG~C~rT-iqh~dsqVNrLeiTpdk~~LAaa~~------qhvRlyD~~S~np~Pv~t 78 (311)
T KOG0315|consen 11 VILVSAGYD-----HTIRFWQALTGICSRT-IQHPDSQVNRLEITPDKKDLAAAGN------QHVRLYDLNSNNPNPVAT 78 (311)
T ss_pred eEEEeccCc-----ceeeeeehhcCeEEEE-EecCccceeeEEEcCCcchhhhccC------CeeEEEEccCCCCCceeE
Confidence 355556655 3566667677765543 2222222222233446677777774 457789988765322333
Q ss_pred CCCCccceEEEEE--CCEEEEEcCCCC
Q psy11333 416 MTTRRLGVAVAVL--GGFLYAIGGSDG 440 (482)
Q Consensus 416 ~~~~r~~~~~~~~--~~~i~v~GG~~~ 440 (482)
...++..-.++.+ +|+-...||.+|
T Consensus 79 ~e~h~kNVtaVgF~~dgrWMyTgseDg 105 (311)
T KOG0315|consen 79 FEGHTKNVTAVGFQCDGRWMYTGSEDG 105 (311)
T ss_pred EeccCCceEEEEEeecCeEEEecCCCc
Confidence 3333344444433 889888999875
No 203
>KOG0286|consensus
Probab=54.58 E-value=1.8e+02 Score=26.81 Aligned_cols=147 Identities=15% Similarity=0.182 Sum_probs=72.2
Q ss_pred CCcEEEEeccccCCCCCceeEEEeCCCCCeee---cc-CCCCCCCceeEEEE--CCEEEEEecCCCCCCCCeEEEEeCCC
Q psy11333 286 RGEVLFAVGGWCSGDAISSVERYDPQSSDWKI---VA-PMSKRRCGVGVAVL--NDLLYAVGGHDGQSYLNSIERYDPQT 359 (482)
Q Consensus 286 ~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~---~~-~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 359 (482)
..+..+..||.. +.+-+|+..+..=+. +. .++....+.+.+.+ +++|.--.| -.++-.||.++
T Consensus 107 PSg~~VAcGGLd-----N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SG------D~TCalWDie~ 175 (343)
T KOG0286|consen 107 PSGNFVACGGLD-----NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSG------DMTCALWDIET 175 (343)
T ss_pred CCCCeEEecCcC-----ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCC------CceEEEEEccc
Confidence 456777888854 456677777653322 22 23444444555554 455554434 24677899998
Q ss_pred CceeecCCCCCCcccceeE--EEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECCEEEEEcC
Q psy11333 360 NQWSCDVAPTTSCRTSVGV--AVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGG 437 (482)
Q Consensus 360 ~~W~~~~~~~~~~r~~~~~--~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG 437 (482)
.+=.+... ...-.-.++ .-.+++.|+.||.+. ....||.....-.+.-.-...-.......-+|.-|+.|-
T Consensus 176 g~~~~~f~--GH~gDV~slsl~p~~~ntFvSg~cD~-----~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS 248 (343)
T KOG0286|consen 176 GQQTQVFH--GHTGDVMSLSLSPSDGNTFVSGGCDK-----SAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS 248 (343)
T ss_pred ceEEEEec--CCcccEEEEecCCCCCCeEEeccccc-----ceeeeeccCcceeEeecccccccceEEEccCCCeeeecC
Confidence 87443301 111011111 122788999999764 344566654433222111111111111222556666654
Q ss_pred CCCCCCCCeEEEEeCCCC
Q psy11333 438 SDGQSPLNTVERFDPKLN 455 (482)
Q Consensus 438 ~~~~~~~~~~~~y~~~~~ 455 (482)
.++ ++..||...+
T Consensus 249 DD~-----tcRlyDlRaD 261 (343)
T KOG0286|consen 249 DDA-----TCRLYDLRAD 261 (343)
T ss_pred CCc-----eeEEEeecCC
Confidence 432 4555555544
No 204
>KOG0281|consensus
Probab=52.23 E-value=2.1e+02 Score=26.97 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=25.6
Q ss_pred eEEEEeCCCCceeecCCCCCCccceEEEEECCEEEEEcCCC
Q psy11333 399 HVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSD 439 (482)
Q Consensus 399 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~ 439 (482)
++-.|+..|. +.+..+.--+.+.++..++|++.|-|-.+
T Consensus 341 TikvW~~st~--efvRtl~gHkRGIAClQYr~rlvVSGSSD 379 (499)
T KOG0281|consen 341 TIKVWSTSTC--EFVRTLNGHKRGIACLQYRDRLVVSGSSD 379 (499)
T ss_pred eEEEEeccce--eeehhhhcccccceehhccCeEEEecCCC
Confidence 4556665443 33444555566777888899999888754
No 205
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=52.00 E-value=1e+02 Score=29.30 Aligned_cols=108 Identities=20% Similarity=0.258 Sum_probs=55.7
Q ss_pred EEecCCCCCCCCe--EEEEeCCCCceeecCCCCCCcccceeEEE--ECCEEEEEeccCCCcccCeEEEE--eCCCCceee
Q psy11333 339 AVGGHDGQSYLNS--IERYDPQTNQWSCDVAPTTSCRTSVGVAV--LDGFLYAVGGQDGVQCLNHVERY--DPKENKWSR 412 (482)
Q Consensus 339 v~GG~~~~~~~~~--~~~yd~~~~~W~~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~y--d~~~~~W~~ 412 (482)
++|+++. ..... ++.+|..+.+++.+ ......-....++. -++.||+....... ...+..| +..+.+.+.
T Consensus 3 ~vgsy~~-~~~~gI~~~~~d~~~g~l~~~-~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~--~g~v~~~~i~~~~g~L~~ 78 (345)
T PF10282_consen 3 YVGSYTN-GKGGGIYVFRFDEETGTLTLV-QTVAEGENPSWLAVSPDGRRLYVVNEGSGD--SGGVSSYRIDPDTGTLTL 78 (345)
T ss_dssp EEEECCS-SSSTEEEEEEEETTTTEEEEE-EEEEESSSECCEEE-TTSSEEEEEETTSST--TTEEEEEEEETTTTEEEE
T ss_pred EEEcCCC-CCCCcEEEEEEcCCCCCceEe-eeecCCCCCceEEEEeCCCEEEEEEccccC--CCCEEEEEECCCcceeEE
Confidence 4566654 11233 45567799999877 32221111122233 46788888654211 2344444 444468888
Q ss_pred cCCCCCCccceEEEEE--CC-EEEEEcCCCCCCCCCeEEEEeCCCC
Q psy11333 413 VAPMTTRRLGVAVAVL--GG-FLYAIGGSDGQSPLNTVERFDPKLN 455 (482)
Q Consensus 413 ~~~~~~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~y~~~~~ 455 (482)
+...+......+.+.+ ++ .||+.- +.+ ..+.+|+...+
T Consensus 79 ~~~~~~~g~~p~~i~~~~~g~~l~van-y~~----g~v~v~~l~~~ 119 (345)
T PF10282_consen 79 LNSVPSGGSSPCHIAVDPDGRFLYVAN-YGG----GSVSVFPLDDD 119 (345)
T ss_dssp EEEEEESSSCEEEEEECTTSSEEEEEE-TTT----TEEEEEEECTT
T ss_pred eeeeccCCCCcEEEEEecCCCEEEEEE-ccC----CeEEEEEccCC
Confidence 8766643333333444 44 566553 221 46777776653
No 206
>KOG4378|consensus
Probab=51.43 E-value=1.5e+02 Score=29.31 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=32.0
Q ss_pred eEEEEeCCCC----ceeecCCCCCCccceEEEEECCEEEEEcCCCCCCCCCeEEEEeCCCCc
Q psy11333 399 HVERYDPKEN----KWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNR 456 (482)
Q Consensus 399 ~~~~yd~~~~----~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~~ 456 (482)
.|..||.... .|... ...|-.+.++...+..|++--|++ +.|+.||.....
T Consensus 188 ~VtlwDv~g~sp~~~~~~~--HsAP~~gicfspsne~l~vsVG~D-----kki~~yD~~s~~ 242 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEA--HSAPCRGICFSPSNEALLVSVGYD-----KKINIYDIRSQA 242 (673)
T ss_pred eEEEEeccCCCcccchhhh--ccCCcCcceecCCccceEEEeccc-----ceEEEeeccccc
Confidence 3555665432 23322 223445556667788999999986 578999987554
No 207
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=50.10 E-value=49 Score=19.65 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=16.4
Q ss_pred EEEEECCEEEEEcCCCCCCCCCeEEEEeCCC
Q psy11333 424 AVAVLGGFLYAIGGSDGQSPLNTVERFDPKL 454 (482)
Q Consensus 424 ~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~ 454 (482)
+.++.++.+|+.++. ..++++|+++
T Consensus 16 ~~~v~~g~vyv~~~d------g~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGD------GNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TT------SEEEEEETT-
T ss_pred CCEEECCEEEEEcCC------CEEEEEeCCC
Confidence 446678888888762 5799999864
No 208
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=49.96 E-value=2.2e+02 Score=26.65 Aligned_cols=162 Identities=11% Similarity=0.145 Sum_probs=74.7
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCC-Ceeecc----CCCCCCCceeEEEE--CCEEEEEecCCCCCCCCeEEEEeCC-
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSS-DWKIVA----PMSKRRCGVGVAVL--NDLLYAVGGHDGQSYLNSIERYDPQ- 358 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~-~W~~~~----~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~- 358 (482)
++.+|+..- ..+.+..||..+. ...... ..+.+...+.++.. +..+|+.... .+++.+|+..
T Consensus 137 g~~l~v~~~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----~~~v~v~~~~~ 206 (330)
T PRK11028 137 NRTLWVPCL-----KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----NSSVDVWQLKD 206 (330)
T ss_pred CCEEEEeeC-----CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----CCEEEEEEEeC
Confidence 346666542 2256888888763 222110 11212222233333 3467876432 2567777765
Q ss_pred -CCceeec--CCCC----CCcccceeEEEE-C-CEEEEEeccCCCcccCeEEEEeC--CCCceeecCCCCCCccceEEEE
Q psy11333 359 -TNQWSCD--VAPT----TSCRTSVGVAVL-D-GFLYAVGGQDGVQCLNHVERYDP--KENKWSRVAPMTTRRLGVAVAV 427 (482)
Q Consensus 359 -~~~W~~~--~~~~----~~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~~~r~~~~~~~ 427 (482)
+++++.+ ...+ +.++....+... + ..+|+.... .+.+..|+. .+..++.+...+.+-....+..
T Consensus 207 ~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~-----~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~ 281 (330)
T PRK11028 207 PHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT-----ASLISVFSVSEDGSVLSFEGHQPTETQPRGFNI 281 (330)
T ss_pred CCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC-----CCeEEEEEEeCCCCeEEEeEEEeccccCCceEE
Confidence 4454332 0222 223332223222 3 457776321 134545544 4445555554332211112222
Q ss_pred E-CC-EEEEEcCCCCCCCCCeEEEE--eCCCCceeecCCCCcCCC
Q psy11333 428 L-GG-FLYAIGGSDGQSPLNTVERF--DPKLNRWTAMAPMSTRRK 468 (482)
Q Consensus 428 ~-~~-~i~v~GG~~~~~~~~~~~~y--~~~~~~W~~~~~~~~~r~ 468 (482)
. +| .||+.+..+ +.+.+| |.+++.++.+...+.+..
T Consensus 282 ~~dg~~l~va~~~~-----~~v~v~~~~~~~g~l~~~~~~~~g~~ 321 (330)
T PRK11028 282 DHSGKYLIAAGQKS-----HHISVYEIDGETGLLTELGRYAVGQG 321 (330)
T ss_pred CCCCCEEEEEEccC-----CcEEEEEEcCCCCcEEEccccccCCC
Confidence 2 44 677765433 356666 445677888776655443
No 209
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=49.55 E-value=3.7e+02 Score=29.02 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=22.5
Q ss_pred eEEEECCEEEEEecCCCCCCCCeEEEEeCCCCc--eeec
Q psy11333 329 GVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQ--WSCD 365 (482)
Q Consensus 329 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~ 365 (482)
+-++.++.||+.... +.++.+|..|.+ |+.-
T Consensus 189 TPlvvgg~lYv~t~~------~~V~ALDa~TGk~lW~~d 221 (764)
T TIGR03074 189 TPLKVGDTLYLCTPH------NKVIALDAATGKEKWKFD 221 (764)
T ss_pred CCEEECCEEEEECCC------CeEEEEECCCCcEEEEEc
Confidence 345579999998652 468888888775 8755
No 210
>KOG2048|consensus
Probab=49.17 E-value=3.2e+02 Score=28.24 Aligned_cols=116 Identities=11% Similarity=0.127 Sum_probs=70.0
Q ss_pred CCCCcEEEEeccccCCCCCceeEEEeCCCCCe-eeccCCCCCCCceeEEEE---CCEEEEEecCCCCCCCCeEEEEeCCC
Q psy11333 284 SRRGEVLFAVGGWCSGDAISSVERYDPQSSDW-KIVAPMSKRRCGVGVAVL---NDLLYAVGGHDGQSYLNSIERYDPQT 359 (482)
Q Consensus 284 ~~~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~ 359 (482)
...++.+.++|-.. .-.++++.|..+.= ..+..+|..+...+...+ +++++++. .+ ..+++.++.++
T Consensus 390 iSPdg~~Ia~st~~----~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s-~~----~~~le~~el~~ 460 (691)
T KOG2048|consen 390 ISPDGNLIAISTVS----RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVS-KN----IFSLEEFELET 460 (691)
T ss_pred cCCCCCEEEEeecc----ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEe-cc----cceeEEEEecC
Confidence 34467777776422 12466666655432 455677777765555543 66777765 11 24678888888
Q ss_pred CceeecCCCCC----CcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecC
Q psy11333 360 NQWSCDVAPTT----SCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVA 414 (482)
Q Consensus 360 ~~W~~~~~~~~----~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 414 (482)
-+.+++.+--+ .+...-.....|+.|-++++. ..+++|++++.+-..+.
T Consensus 461 ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~------g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 461 PSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR------GQIFVYNLETLESHLLK 513 (691)
T ss_pred cchhhhhccccccCCCcceeEEEcCCCCEEEEEecc------ceEEEEEcccceeecch
Confidence 88776622112 222333334457788888753 46899999988766555
No 211
>KOG0308|consensus
Probab=48.96 E-value=2.7e+02 Score=28.71 Aligned_cols=67 Identities=18% Similarity=0.355 Sum_probs=39.0
Q ss_pred CCCcEEEEeccccCCCCCceeEEEeCCCCC------eeecc--CCC-CCCCc-eeEEE-ECCEEEEEecCCCCCCCCeEE
Q psy11333 285 RRGEVLFAVGGWCSGDAISSVERYDPQSSD------WKIVA--PMS-KRRCG-VGVAV-LNDLLYAVGGHDGQSYLNSIE 353 (482)
Q Consensus 285 ~~~~~l~~~GG~~~~~~~~~~~~~d~~~~~------W~~~~--~~~-~~~~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~ 353 (482)
.-++.+++-||.. ..++.+|..+.. ...++ .++ .++.. ++.+. -.+.++|.||.. +.+.
T Consensus 127 ak~~~lvaSgGLD-----~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte-----k~lr 196 (735)
T KOG0308|consen 127 AKNNELVASGGLD-----RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE-----KDLR 196 (735)
T ss_pred ccCceeEEecCCC-----ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc-----cceE
Confidence 3478899999864 346666666442 22222 233 23322 23333 244678888754 5788
Q ss_pred EEeCCCCc
Q psy11333 354 RYDPQTNQ 361 (482)
Q Consensus 354 ~yd~~~~~ 361 (482)
.|||.+.+
T Consensus 197 ~wDprt~~ 204 (735)
T KOG0308|consen 197 LWDPRTCK 204 (735)
T ss_pred Eecccccc
Confidence 99999885
No 212
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=47.94 E-value=1.2e+02 Score=27.62 Aligned_cols=146 Identities=16% Similarity=0.128 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHhhcCeeeeccccHhhHHHHhcccChhh-HHHHHHHHHhccCCCCCHHHHHHHH------hhCCCHHHHH
Q psy11333 85 DDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVE-IQDICCEFLKRQLDPSNCLGIRAFA------DTHSCRDLLR 157 (482)
Q Consensus 85 ~~~~~~~~l~~~y~~~~~~~~~~~~~ll~~a~~~~~~~-L~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~L~~ 157 (482)
....++.++..+-...-.++..-...+++.|..++... .+...+..|-.++...+.-.++.-+ ..|..+-+..
T Consensus 69 ~r~llEtiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~r 148 (258)
T PF03000_consen 69 QRELLETIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQR 148 (258)
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHH
Confidence 44457777877777555677778889999999998755 3344555555555544443443333 1111111122
Q ss_pred HHHHHH--------------------------------HHhHHHHhcccccccCCHHHHhHhhcCCC-cccCChHHHHHH
Q psy11333 158 IADKFT--------------------------------QHNFQEVMESEEFLILPVAQLVDIISSDE-LNVRSEEQVFNA 204 (482)
Q Consensus 158 ~~~~~i--------------------------------~~~~~~l~~~~~f~~l~~~~l~~il~~~~-l~~~~e~~v~~~ 204 (482)
....|+ ...+.++-.. ..|+...+..+.+.-. ....+.+.+|.+
T Consensus 149 iv~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D---~~L~~~kF~~Lae~lP~~aR~~hD~LYrA 225 (258)
T PF03000_consen 149 IVEHFLSQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPD---PNLKPSKFVALAEALPDSARPSHDGLYRA 225 (258)
T ss_pred HHHHHHhcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHCCHhhhhccchHHHH
Confidence 222222 2222223222 2566666666555322 234567789999
Q ss_pred HHHHHhcChhHHHHHHHHhhccccCCCCC
Q psy11333 205 IMSWLKYNVSERRQHLAQVLQHVRLPLLS 233 (482)
Q Consensus 205 ~~~wi~~~~~~~~~~~~~l~~~~r~~~~~ 233 (482)
|..+++.++.-.+..-..+++.+...-++
T Consensus 226 ID~YLk~Hp~ls~~Er~~lC~~ldc~KLS 254 (258)
T PF03000_consen 226 IDIYLKAHPGLSEEERKRLCRLLDCQKLS 254 (258)
T ss_pred HHHHHHHcccCCHHHHHHHHhhCCcccCC
Confidence 99999866533333333455444444333
No 213
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=47.88 E-value=2.4e+02 Score=26.37 Aligned_cols=132 Identities=15% Similarity=0.207 Sum_probs=62.2
Q ss_pred CCCCeeeccCCCCCCCceeEEEE-CCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCc-ccc-eeEEEECCEEEE
Q psy11333 311 QSSDWKIVAPMSKRRCGVGVAVL-NDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSC-RTS-VGVAVLDGFLYA 387 (482)
Q Consensus 311 ~~~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~-r~~-~~~~~~~~~lyv 387 (482)
..+.|+.+. +|....-..+... .++-|++|-. ..+..=+---.+|+....+.+.+ ... .++...++..|+
T Consensus 4 ~~~~W~~v~-l~t~~~l~dV~F~d~~~G~~VG~~------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~i 76 (302)
T PF14870_consen 4 SGNSWQQVS-LPTDKPLLDVAFVDPNHGWAVGAY------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWI 76 (302)
T ss_dssp SS--EEEEE--S-SS-EEEEEESSSS-EEEEETT------TEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEE
T ss_pred cCCCcEEee-cCCCCceEEEEEecCCEEEEEecC------CEEEEECCCCccccccccCCCccceeeEEEEEecCCceEE
Confidence 456898876 3444445555555 4678998853 23444333456799873333333 222 344456788998
Q ss_pred EeccCCCcccCeEEEEeCCCCceeecC-CCCCCccceEEEEE-CCEEEEEcCCCCCCCCCeEEEEeCCCCceeecC
Q psy11333 388 VGGQDGVQCLNHVERYDPKENKWSRVA-PMTTRRLGVAVAVL-GGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMA 461 (482)
Q Consensus 388 ~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~~ 461 (482)
+|.. ..+..-.-.-.+|+.++ +.+.|...+.+..+ ++.+.+.|.. ..+++=.-.-.+|+.+.
T Consensus 77 vG~~------g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~------G~iy~T~DgG~tW~~~~ 140 (302)
T PF14870_consen 77 VGEP------GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR------GAIYRTTDGGKTWQAVV 140 (302)
T ss_dssp EEET------TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--------EEEESSTTSSEEEEE
T ss_pred EcCC------ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC------CcEEEeCCCCCCeeEcc
Confidence 8742 12333333467899987 33444444454444 5567776653 34555444556787753
No 214
>KOG4649|consensus
Probab=46.29 E-value=2.3e+02 Score=25.70 Aligned_cols=91 Identities=24% Similarity=0.327 Sum_probs=51.6
Q ss_pred CceeEEEeCCCCC--eeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCC--ceeecCCCCCCccccee
Q psy11333 302 ISSVERYDPQSSD--WKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTN--QWSCDVAPTTSCRTSVG 377 (482)
Q Consensus 302 ~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~r~~~~ 377 (482)
...+-..|+.+.. |+.+- ..|.-.++.++++. .|+|-+.+ .+|..+.+|+ -|... . .. .....+
T Consensus 32 s~~~~avd~~sG~~~We~il---g~RiE~sa~vvgdf-VV~GCy~g-----~lYfl~~~tGs~~w~f~-~-~~-~vk~~a 99 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAIL---GVRIECSAIVVGDF-VVLGCYSG-----GLYFLCVKTGSQIWNFV-I-LE-TVKVRA 99 (354)
T ss_pred CceEEEecCCCCcEEeehhh---CceeeeeeEEECCE-EEEEEccC-----cEEEEEecchhheeeee-e-hh-hhccce
Confidence 3467788888874 76543 34666677777877 56676553 4677776666 48755 1 11 111122
Q ss_pred EEEECCEEEEEeccCCCcccCeEEEEeCCCCc
Q psy11333 378 VAVLDGFLYAVGGQDGVQCLNHVERYDPKENK 409 (482)
Q Consensus 378 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~ 409 (482)
.+-.++.+...|.+++ +.+..|+++..
T Consensus 100 ~~d~~~glIycgshd~-----~~yalD~~~~~ 126 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDG-----NFYALDPKTYG 126 (354)
T ss_pred EEcCCCceEEEecCCC-----cEEEecccccc
Confidence 2333444444555443 46667776654
No 215
>KOG1446|consensus
Probab=46.24 E-value=2.5e+02 Score=26.04 Aligned_cols=56 Identities=11% Similarity=0.158 Sum_probs=28.5
Q ss_pred ceeEEEeCCCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCcee
Q psy11333 303 SSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWS 363 (482)
Q Consensus 303 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 363 (482)
.++..++..+|+.-+-=+--..+...-.+.-.+..++.|+.+ +++..||..+.+-.
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D-----~tvrLWDlR~~~cq 135 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLD-----KTVRLWDLRVKKCQ 135 (311)
T ss_pred CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccC-----CeEEeeEecCCCCc
Confidence 456667777777643211111111111111144677777765 36778888766544
No 216
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=46.18 E-value=2e+02 Score=25.17 Aligned_cols=97 Identities=19% Similarity=0.256 Sum_probs=63.6
Q ss_pred eEEEECCEEEEEecCCCCCCCCeEEEEeCCCCc--eeecCCCCC-CcccceeEEEECCEEEEEeccCCCcccCeEEEEeC
Q psy11333 329 GVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQ--WSCDVAPTT-SCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDP 405 (482)
Q Consensus 329 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~ 405 (482)
+....+|+||..-|..+ .+.+.++|..+.+ |++ +++ ...++-+.+..++.+|..-=.. ...+.||+
T Consensus 50 GL~~~~g~i~esTG~yg---~S~ir~~~L~~gq~~~s~---~l~~~~~FgEGit~~gd~~y~LTw~e-----gvaf~~d~ 118 (262)
T COG3823 50 GLEYLDGHILESTGLYG---FSKIRVSDLTTGQEIFSE---KLAPDTVFGEGITKLGDYFYQLTWKE-----GVAFKYDA 118 (262)
T ss_pred ceeeeCCEEEEeccccc---cceeEEEeccCceEEEEe---ecCCccccccceeeccceEEEEEecc-----ceeEEECh
Confidence 45557889998877654 3578999999776 543 233 3345567888999999885322 23566765
Q ss_pred CCCceeecCCCCCCccceEEEEECCEEEEEcCC
Q psy11333 406 KENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGS 438 (482)
Q Consensus 406 ~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~ 438 (482)
. +.+.+...+.+-.+.+.+.-+..|..--|.
T Consensus 119 ~--t~~~lg~~~y~GeGWgLt~d~~~LimsdGs 149 (262)
T COG3823 119 D--TLEELGRFSYEGEGWGLTSDDKNLIMSDGS 149 (262)
T ss_pred H--HhhhhcccccCCcceeeecCCcceEeeCCc
Confidence 4 455566666666677777666666666553
No 217
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=44.68 E-value=2.4e+02 Score=25.48 Aligned_cols=154 Identities=21% Similarity=0.267 Sum_probs=73.1
Q ss_pred CCCcEEEEecc-cc-CCCCCceeEEEe---CCCCCeee--ccCCCC-------CCCceeEEEECCEEEEEecCCCCCCCC
Q psy11333 285 RRGEVLFAVGG-WC-SGDAISSVERYD---PQSSDWKI--VAPMSK-------RRCGVGVAVLNDLLYAVGGHDGQSYLN 350 (482)
Q Consensus 285 ~~~~~l~~~GG-~~-~~~~~~~~~~~d---~~~~~W~~--~~~~~~-------~~~~~~~~~~~~~iyv~GG~~~~~~~~ 350 (482)
++++.||.+=- +. .+..+...+.|| ...+.|+. ++..+. ...-|+-+++++.=|.+|=.++.-...
T Consensus 82 v~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPR 161 (367)
T PF12217_consen 82 VVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPR 161 (367)
T ss_dssp EETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-
T ss_pred eecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcc
Confidence 45777776532 21 233333444444 46677853 444444 233477888888888888555433333
Q ss_pred eE-EEEeCCC------CceeecCCCCCCcccceeEEEECCEEEEEe-ccCCCcccCeEEEEeCCCCceeecCCC-CCCcc
Q psy11333 351 SI-ERYDPQT------NQWSCDVAPTTSCRTSVGVAVLDGFLYAVG-GQDGVQCLNHVERYDPKENKWSRVAPM-TTRRL 421 (482)
Q Consensus 351 ~~-~~yd~~~------~~W~~~~~~~~~~r~~~~~~~~~~~lyv~G-G~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~r~ 421 (482)
.+ ..|-+.. -.=+.+++.....-.-+++-.++|.||+.- |..+...-+.+.+-+.....|+.+.-. ..--.
T Consensus 162 e~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHht 241 (367)
T PF12217_consen 162 ELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHHT 241 (367)
T ss_dssp EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---SS
T ss_pred eeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcccccccccc
Confidence 32 2332211 111222122122223456667899999985 444433345677777778899887622 12222
Q ss_pred ceEEEEECCEEEEEcCC
Q psy11333 422 GVAVAVLGGFLYAIGGS 438 (482)
Q Consensus 422 ~~~~~~~~~~i~v~GG~ 438 (482)
....+..++.||++|-.
T Consensus 242 nlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 242 NLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp ---EEEETTEEEEEEE-
T ss_pred CCCceeeCCEEEEEecc
Confidence 33456789999999873
No 218
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=44.52 E-value=57 Score=30.77 Aligned_cols=140 Identities=15% Similarity=0.052 Sum_probs=68.8
Q ss_pred cEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEEE-CCEEEEEecCC---C-CCCCCeEEEEeCCCCce
Q psy11333 288 EVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVL-NDLLYAVGGHD---G-QSYLNSIERYDPQTNQW 362 (482)
Q Consensus 288 ~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~---~-~~~~~~~~~yd~~~~~W 362 (482)
+.+||.-.-.... ...++.+|..+++. ++.++.+-.++.+..- +..+|+..=+- . ..+.+-++.||+.|-+-
T Consensus 3 ~rvyV~D~~~~~~-~~rv~viD~d~~k~--lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~ 79 (342)
T PF06433_consen 3 HRVYVQDPVFFHM-TSRVYVIDADSGKL--LGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP 79 (342)
T ss_dssp TEEEEEE-GGGGS-SEEEEEEETTTTEE--EEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE
T ss_pred cEEEEECCccccc-cceEEEEECCCCcE--EEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc
Confidence 4677775422122 25788999888775 3443333333333323 44577665321 1 12456799999999964
Q ss_pred eecCCCCCC-cccc------eeEEEECC-EEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECCEEEE
Q psy11333 363 SCDVAPTTS-CRTS------VGVAVLDG-FLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYA 434 (482)
Q Consensus 363 ~~~~~~~~~-~r~~------~~~~~~~~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v 434 (482)
+.- -.+|. +|.. ....+-+| .+||.. . ....+|-+-|...++-. ..++.|-+.+....-++..+.
T Consensus 80 ~~E-I~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N-~---TPa~SVtVVDl~~~kvv--~ei~~PGC~~iyP~~~~~F~~ 152 (342)
T PF06433_consen 80 TGE-IEIPPKPRAQVVPYKNMFALSADGKFLYVQN-F---TPATSVTVVDLAAKKVV--GEIDTPGCWLIYPSGNRGFSM 152 (342)
T ss_dssp EEE-EEETTS-B--BS--GGGEEE-TTSSEEEEEE-E---SSSEEEEEEETTTTEEE--EEEEGTSEEEEEEEETTEEEE
T ss_pred cce-EecCCcchheecccccceEEccCCcEEEEEc-c---CCCCeEEEEECCCCcee--eeecCCCEEEEEecCCCceEE
Confidence 421 11222 2332 12223344 455553 2 23467889999888753 333344333333333334333
Q ss_pred EcC
Q psy11333 435 IGG 437 (482)
Q Consensus 435 ~GG 437 (482)
++|
T Consensus 153 lC~ 155 (342)
T PF06433_consen 153 LCG 155 (342)
T ss_dssp EET
T ss_pred Eec
Confidence 333
No 219
>PRK10115 protease 2; Provisional
Probab=44.35 E-value=4.2e+02 Score=28.20 Aligned_cols=168 Identities=9% Similarity=0.043 Sum_probs=83.6
Q ss_pred CCcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEEE-CCE-EEEEecCCC-CCCCCeEEEEeCCCCce
Q psy11333 286 RGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVL-NDL-LYAVGGHDG-QSYLNSIERYDPQTNQW 362 (482)
Q Consensus 286 ~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~-~~~-iyv~GG~~~-~~~~~~~~~yd~~~~~W 362 (482)
-+++.++++-..++.-...++..|+.++.. ++.... ......+-. ++. +|+. ..+. ......+++++..+..-
T Consensus 136 pdg~~la~~~d~~G~E~~~l~v~d~~tg~~--l~~~i~-~~~~~~~w~~D~~~~~y~-~~~~~~~~~~~v~~h~lgt~~~ 211 (686)
T PRK10115 136 PDNTIMALAEDFLSRRQYGIRFRNLETGNW--YPELLD-NVEPSFVWANDSWTFYYV-RKHPVTLLPYQVWRHTIGTPAS 211 (686)
T ss_pred CCCCEEEEEecCCCcEEEEEEEEECCCCCC--CCcccc-CcceEEEEeeCCCEEEEE-EecCCCCCCCEEEEEECCCChh
Confidence 355666666444444445688888887642 122111 111333333 544 4443 3332 23457899999998843
Q ss_pred e--ecCCCCCCcccceeEEEE-CCEEEEEeccCCCcccCeEEEEeC--CCCceeecCCCCCCccceEEEEECCEEEEEcC
Q psy11333 363 S--CDVAPTTSCRTSVGVAVL-DGFLYAVGGQDGVQCLNHVERYDP--KENKWSRVAPMTTRRLGVAVAVLGGFLYAIGG 437 (482)
Q Consensus 363 ~--~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG 437 (482)
+ .+.. -+........... +++..++...... .+.++.|+. .+..|..+.+.+.... ......++.+|+.-.
T Consensus 212 ~d~lv~~-e~~~~~~~~~~~s~d~~~l~i~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ly~~tn 287 (686)
T PRK10115 212 QDELVYE-EKDDTFYVSLHKTTSKHYVVIHLASAT--TSEVLLLDAELADAEPFVFLPRRKDHE-YSLDHYQHRFYLRSN 287 (686)
T ss_pred HCeEEEe-eCCCCEEEEEEEcCCCCEEEEEEECCc--cccEEEEECcCCCCCceEEEECCCCCE-EEEEeCCCEEEEEEc
Confidence 2 2211 1112222233333 5554445544332 356777773 2344433332222222 233355788998865
Q ss_pred CCCCCCCCeEEEEeCC-CCceeecCCC
Q psy11333 438 SDGQSPLNTVERFDPK-LNRWTAMAPM 463 (482)
Q Consensus 438 ~~~~~~~~~~~~y~~~-~~~W~~~~~~ 463 (482)
.+.. ...+...+.. ..+|+.+-+-
T Consensus 288 ~~~~--~~~l~~~~~~~~~~~~~l~~~ 312 (686)
T PRK10115 288 RHGK--NFGLYRTRVRDEQQWEELIPP 312 (686)
T ss_pred CCCC--CceEEEecCCCcccCeEEECC
Confidence 5332 2456666766 5789887543
No 220
>KOG0640|consensus
Probab=44.35 E-value=2.6e+02 Score=26.00 Aligned_cols=105 Identities=18% Similarity=0.267 Sum_probs=57.8
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEE-E--CCEEEEEecCCCCCCCCeEEEEeCCCCcee
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAV-L--NDLLYAVGGHDGQSYLNSIERYDPQTNQWS 363 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 363 (482)
.+...++|- ..+.+..||..|-+--.-+.+.....+.-..+ + .+.||+-|.+++ .+-.||-.+++.-
T Consensus 227 sGefllvgT-----dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG-----~IklwDGVS~rCv 296 (430)
T KOG0640|consen 227 SGEFLLVGT-----DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDG-----AIKLWDGVSNRCV 296 (430)
T ss_pred CCceEEEec-----CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCC-----cEEeeccccHHHH
Confidence 344445553 22457789998877543233222232222222 3 789999999876 4778998888753
Q ss_pred ecCCCCCCcccceeE----EEECCEEEEEeccCCCcccCeEEEEeCCCCc
Q psy11333 364 CDVAPTTSCRTSVGV----AVLDGFLYAVGGQDGVQCLNHVERYDPKENK 409 (482)
Q Consensus 364 ~~~~~~~~~r~~~~~----~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~ 409 (482)
+- ...++.+..+ ..-+++..+..|.+. .+..|.+.+++
T Consensus 297 ~t---~~~AH~gsevcSa~Ftkn~kyiLsSG~DS-----~vkLWEi~t~R 338 (430)
T KOG0640|consen 297 RT---IGNAHGGSEVCSAVFTKNGKYILSSGKDS-----TVKLWEISTGR 338 (430)
T ss_pred HH---HHhhcCCceeeeEEEccCCeEEeecCCcc-----eeeeeeecCCc
Confidence 22 2223322222 233788777777643 34445545444
No 221
>PRK10115 protease 2; Provisional
Probab=44.26 E-value=4.2e+02 Score=28.19 Aligned_cols=150 Identities=14% Similarity=0.126 Sum_probs=78.3
Q ss_pred CceeEEEeC--CCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCC-CCceeecCCCCCCcccceeE
Q psy11333 302 ISSVERYDP--QSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQ-TNQWSCDVAPTTSCRTSVGV 378 (482)
Q Consensus 302 ~~~~~~~d~--~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~-~~~W~~~~~~~~~~r~~~~~ 378 (482)
.+.++.|+. .+..|..+-+.+.. ........++.+|+.--.+. ....+...+.. ..+|+.+ -+....+.--.+
T Consensus 246 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ly~~tn~~~--~~~~l~~~~~~~~~~~~~l-~~~~~~~~i~~~ 321 (686)
T PRK10115 246 TSEVLLLDAELADAEPFVFLPRRKD-HEYSLDHYQHRFYLRSNRHG--KNFGLYRTRVRDEQQWEEL-IPPRENIMLEGF 321 (686)
T ss_pred cccEEEEECcCCCCCceEEEECCCC-CEEEEEeCCCEEEEEEcCCC--CCceEEEecCCCcccCeEE-ECCCCCCEEEEE
Confidence 356777773 23343322222221 22233345778888754432 22346777776 5789988 333222333345
Q ss_pred EEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEE---EC-CEEEE-EcCCCCCCCCCeEEEEeCC
Q psy11333 379 AVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAV---LG-GFLYA-IGGSDGQSPLNTVERFDPK 453 (482)
Q Consensus 379 ~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~---~~-~~i~v-~GG~~~~~~~~~~~~y~~~ 453 (482)
...++.+++..-.++. ..++.+|+.+.....+. ++.+........ .+ +.+++ +.+.. .-.+++.||+.
T Consensus 322 ~~~~~~l~~~~~~~g~---~~l~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ss~~---~P~~~y~~d~~ 394 (686)
T PRK10115 322 TLFTDWLVVEERQRGL---TSLRQINRKTREVIGIA-FDDPAYVTWIAYNPEPETSRLRYGYSSMT---TPDTLFELDMD 394 (686)
T ss_pred EEECCEEEEEEEeCCE---EEEEEEcCCCCceEEec-CCCCceEeeecccCCCCCceEEEEEecCC---CCCEEEEEECC
Confidence 5567888877654432 45778887655555443 122222211111 11 33333 33322 23689999999
Q ss_pred CCceeecCC
Q psy11333 454 LNRWTAMAP 462 (482)
Q Consensus 454 ~~~W~~~~~ 462 (482)
+++|+.+..
T Consensus 395 ~~~~~~l~~ 403 (686)
T PRK10115 395 TGERRVLKQ 403 (686)
T ss_pred CCcEEEEEe
Confidence 988887753
No 222
>KOG0318|consensus
Probab=43.81 E-value=3.5e+02 Score=27.15 Aligned_cols=103 Identities=20% Similarity=0.264 Sum_probs=61.5
Q ss_pred CCCCcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEEE--CCEEEEEecCCCCCCCCeEEEEeCCCCc
Q psy11333 284 SRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVL--NDLLYAVGGHDGQSYLNSIERYDPQTNQ 361 (482)
Q Consensus 284 ~~~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 361 (482)
+..++.-+++||.++ .+..|......-.....+...|...+.+.+ ++..++.|-. ...+..||..++.
T Consensus 451 v~~~~~~vaVGG~Dg-----kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da-----~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 451 VSPDGSEVAVGGQDG-----KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA-----SRKVVLYDVASRE 520 (603)
T ss_pred EcCCCCEEEEecccc-----eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc-----CCcEEEEEcccCc
Confidence 345678888888542 478888887765555554455555555554 4455555432 3457778876554
Q ss_pred -----eeecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCC
Q psy11333 362 -----WSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPK 406 (482)
Q Consensus 362 -----W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~ 406 (482)
|..- .+|-..-+..-++++++.|+.+ ..++.|+.+
T Consensus 521 ~~~~~w~FH-----takI~~~aWsP~n~~vATGSlD-----t~Viiysv~ 560 (603)
T KOG0318|consen 521 VKTNRWAFH-----TAKINCVAWSPNNKLVATGSLD-----TNVIIYSVK 560 (603)
T ss_pred eecceeeee-----eeeEEEEEeCCCceEEEecccc-----ceEEEEEcc
Confidence 4322 2333333334578899998864 357788765
No 223
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=43.50 E-value=2.1e+02 Score=25.84 Aligned_cols=145 Identities=20% Similarity=0.171 Sum_probs=72.1
Q ss_pred CcEEEEeccccCCCCCceeE-EEeCCCCCeeeccCCC-CCCCceeEEE-E-CCEEEEEecCCCCCCCCeEEEEeCC-CCc
Q psy11333 287 GEVLFAVGGWCSGDAISSVE-RYDPQSSDWKIVAPMS-KRRCGVGVAV-L-NDLLYAVGGHDGQSYLNSIERYDPQ-TNQ 361 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~-~~d~~~~~W~~~~~~~-~~~~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~yd~~-~~~ 361 (482)
++.+++..-........... .-+....+|+.....+ .......+.+ . +|.|+++--..... .....+... -.+
T Consensus 118 ~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~~--~~~~~~S~D~G~T 195 (275)
T PF13088_consen 118 DGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTEGND--DIYISRSTDGGRT 195 (275)
T ss_dssp TTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEECSST--EEEEEEESSTTSS
T ss_pred CCCEEEEEeeccccCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEccCCC--cEEEEEECCCCCc
Confidence 55666652111112222333 3445566798876653 2233333333 3 77888886542111 334444444 446
Q ss_pred eeec-CCCCCCcccceeEEE-ECCEEEEEeccCCCcccCeEEEEeC-CCCceeecCCCCCCc----cceEEEEE-CCEEE
Q psy11333 362 WSCD-VAPTTSCRTSVGVAV-LDGFLYAVGGQDGVQCLNHVERYDP-KENKWSRVAPMTTRR----LGVAVAVL-GGFLY 433 (482)
Q Consensus 362 W~~~-~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~yd~-~~~~W~~~~~~~~~r----~~~~~~~~-~~~i~ 433 (482)
|+.. ...+|.+.....++. -+|+++++.+..... .+-...+.. ...+|.....+.... .+..++.. +|+||
T Consensus 196 Ws~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r-~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~ 274 (275)
T PF13088_consen 196 WSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGR-SNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLY 274 (275)
T ss_dssp -EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTS-EEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEE
T ss_pred CCCceecccCcccCCceEEEcCCCCEEEEEECCCCC-CceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCC
Confidence 9875 124555555445444 367888887732211 122222333 367898765443322 34445555 67988
Q ss_pred E
Q psy11333 434 A 434 (482)
Q Consensus 434 v 434 (482)
|
T Consensus 275 i 275 (275)
T PF13088_consen 275 I 275 (275)
T ss_dssp E
T ss_pred C
Confidence 6
No 224
>KOG4649|consensus
Probab=43.48 E-value=2.5e+02 Score=25.43 Aligned_cols=90 Identities=24% Similarity=0.282 Sum_probs=49.9
Q ss_pred CeEEEEeCCCCc--eeecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCC--ceeecCCCCCCccceEE
Q psy11333 350 NSIERYDPQTNQ--WSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKEN--KWSRVAPMTTRRLGVAV 425 (482)
Q Consensus 350 ~~~~~yd~~~~~--W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~~~~ 425 (482)
..+-+-|+.+++ |+.+ ...|.-.++.+.++. .|+|-+++. ++..+.+|. -|....-- . ....+.
T Consensus 33 ~~~~avd~~sG~~~We~i----lg~RiE~sa~vvgdf-VV~GCy~g~-----lYfl~~~tGs~~w~f~~~~-~-vk~~a~ 100 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAI----LGVRIECSAIVVGDF-VVLGCYSGG-----LYFLCVKTGSQIWNFVILE-T-VKVRAQ 100 (354)
T ss_pred ceEEEecCCCCcEEeehh----hCceeeeeeEEECCE-EEEEEccCc-----EEEEEecchhheeeeeehh-h-hccceE
Confidence 357788998775 8866 225655666677777 667766543 555555554 57665421 1 111222
Q ss_pred EEECCEEEEEcCCCCCCCCCeEEEEeCCCCc
Q psy11333 426 AVLGGFLYAIGGSDGQSPLNTVERFDPKLNR 456 (482)
Q Consensus 426 ~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~~ 456 (482)
+-.++.+.-+|-.++ +.+..|+.+..
T Consensus 101 ~d~~~glIycgshd~-----~~yalD~~~~~ 126 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDG-----NFYALDPKTYG 126 (354)
T ss_pred EcCCCceEEEecCCC-----cEEEecccccc
Confidence 233344444454443 46667766553
No 225
>KOG0278|consensus
Probab=41.67 E-value=2.6e+02 Score=25.11 Aligned_cols=92 Identities=18% Similarity=0.129 Sum_probs=48.9
Q ss_pred CeEEEEeCCCCceeecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEEC
Q psy11333 350 NSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLG 429 (482)
Q Consensus 350 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 429 (482)
.+|-.||..+++=.+- -..+.+... .-+..+|++..+-- -.++.-+|+++-.--+--.||.....++. .-+
T Consensus 165 ~tVRLWD~rTgt~v~s-L~~~s~VtS-lEvs~dG~ilTia~------gssV~Fwdaksf~~lKs~k~P~nV~SASL-~P~ 235 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQS-LEFNSPVTS-LEVSQDGRILTIAY------GSSVKFWDAKSFGLLKSYKMPCNVESASL-HPK 235 (334)
T ss_pred CceEEEEeccCcEEEE-EecCCCCcc-eeeccCCCEEEEec------CceeEEeccccccceeeccCccccccccc-cCC
Confidence 5788999998875433 222333221 22345677666631 13566677664433222245543332222 225
Q ss_pred CEEEEEcCCCCCCCCCeEEEEeCCCC
Q psy11333 430 GFLYAIGGSDGQSPLNTVERFDPKLN 455 (482)
Q Consensus 430 ~~i~v~GG~~~~~~~~~~~~y~~~~~ 455 (482)
..+||.||.+. .+++||-.++
T Consensus 236 k~~fVaGged~-----~~~kfDy~Tg 256 (334)
T KOG0278|consen 236 KEFFVAGGEDF-----KVYKFDYNTG 256 (334)
T ss_pred CceEEecCcce-----EEEEEeccCC
Confidence 58999999753 3566665544
No 226
>KOG0286|consensus
Probab=41.18 E-value=2.9e+02 Score=25.47 Aligned_cols=96 Identities=17% Similarity=0.153 Sum_probs=47.6
Q ss_pred ECCEEEEEecCCCCCCCCeEEEEeCCCCcee---ecCCCCCCcccceeEEE-E-CCEEEEEeccCCCcccCeEEEEeCCC
Q psy11333 333 LNDLLYAVGGHDGQSYLNSIERYDPQTNQWS---CDVAPTTSCRTSVGVAV-L-DGFLYAVGGQDGVQCLNHVERYDPKE 407 (482)
Q Consensus 333 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~---~~~~~~~~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~yd~~~ 407 (482)
-.+.....||.+ +.+-+|+..+..=+ .+...++-...+.+++. . ++.|....|- .+.-.||.++
T Consensus 107 PSg~~VAcGGLd-----N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD------~TCalWDie~ 175 (343)
T KOG0286|consen 107 PSGNFVACGGLD-----NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD------MTCALWDIET 175 (343)
T ss_pred CCCCeEEecCcC-----ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC------ceEEEEEccc
Confidence 477888899976 45778888755322 11112232233334443 3 3444433331 3456688877
Q ss_pred CceeecCCCCCCccceEEE--EECCEEEEEcCCCC
Q psy11333 408 NKWSRVAPMTTRRLGVAVA--VLGGFLYAIGGSDG 440 (482)
Q Consensus 408 ~~W~~~~~~~~~r~~~~~~--~~~~~i~v~GG~~~ 440 (482)
.+=...-.- ..-...+.. -.+++.||-||.+.
T Consensus 176 g~~~~~f~G-H~gDV~slsl~p~~~ntFvSg~cD~ 209 (343)
T KOG0286|consen 176 GQQTQVFHG-HTGDVMSLSLSPSDGNTFVSGGCDK 209 (343)
T ss_pred ceEEEEecC-CcccEEEEecCCCCCCeEEeccccc
Confidence 654332210 000011111 11678999999754
No 227
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=39.92 E-value=3.2e+02 Score=25.59 Aligned_cols=159 Identities=18% Similarity=0.165 Sum_probs=77.6
Q ss_pred eEEEeCCCCC-eeeccC----CCCCCCceeEEEECCEEEEEecC------CCCCCCCeEEEEeCCCCceeecCCCCCCcc
Q psy11333 305 VERYDPQSSD-WKIVAP----MSKRRCGVGVAVLNDLLYAVGGH------DGQSYLNSIERYDPQTNQWSCDVAPTTSCR 373 (482)
Q Consensus 305 ~~~~d~~~~~-W~~~~~----~~~~~~~~~~~~~~~~iyv~GG~------~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r 373 (482)
++.+++.+.. |..+.. .+.-|.+=+.+.-+|.+|+---. ......-.+|++|| ....+++... ....
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~-~~~~ 164 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD-DLTI 164 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC-cEEe
Confidence 4566654332 233332 33344444555556777764222 11122347999999 4555555122 1122
Q ss_pred cceeEEEECC-EEEEEeccCCCcccCeEEEEeCCC--------CceeecCCCCCCccceEEEEECCEEEEEcCCCCCCCC
Q psy11333 374 TSVGVAVLDG-FLYAVGGQDGVQCLNHVERYDPKE--------NKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPL 444 (482)
Q Consensus 374 ~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~yd~~~--------~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~ 444 (482)
.+.-+.+-++ .+|+.= +..+.+++|+... ..+.... ...++-.-.++--+|.+|+.....+
T Consensus 165 ~NGla~SpDg~tly~aD-----T~~~~i~r~~~d~~~g~~~~~~~~~~~~-~~~G~PDG~~vDadG~lw~~a~~~g---- 234 (307)
T COG3386 165 PNGLAFSPDGKTLYVAD-----TPANRIHRYDLDPATGPIGGRRGFVDFD-EEPGLPDGMAVDADGNLWVAAVWGG---- 234 (307)
T ss_pred cCceEECCCCCEEEEEe-----CCCCeEEEEecCcccCccCCcceEEEcc-CCCCCCCceEEeCCCCEEEecccCC----
Confidence 2222223344 677763 2235677776542 1111111 1223333334444889998665544
Q ss_pred CeEEEEeCCCCceeecCCCCcCCCceeEEEEcCC
Q psy11333 445 NTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVGD 478 (482)
Q Consensus 445 ~~~~~y~~~~~~W~~~~~~~~~r~~~~~~~~~~~ 478 (482)
..+.+|+|+ +..+.....|....+.++++|-
T Consensus 235 ~~v~~~~pd---G~l~~~i~lP~~~~t~~~FgG~ 265 (307)
T COG3386 235 GRVVRFNPD---GKLLGEIKLPVKRPTNPAFGGP 265 (307)
T ss_pred ceEEEECCC---CcEEEEEECCCCCCccceEeCC
Confidence 479999997 3334433333345555666653
No 228
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=39.50 E-value=3.4e+02 Score=25.78 Aligned_cols=154 Identities=17% Similarity=0.209 Sum_probs=73.0
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCCCeeeccC-------CCCCCCceeEEEECCEEEEEe-cCCCCCCCCeEEEEeCC
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAP-------MSKRRCGVGVAVLNDLLYAVG-GHDGQSYLNSIERYDPQ 358 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~-------~~~~~~~~~~~~~~~~iyv~G-G~~~~~~~~~~~~yd~~ 358 (482)
+..+||.- -.+..+|-..|...++--..-+ .|.+..++++.--+|.+..+. +.+++.....-..|++.
T Consensus 106 gk~~~V~N----~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~ 181 (342)
T PF06433_consen 106 GKFLYVQN----FTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPD 181 (342)
T ss_dssp SSEEEEEE----ESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTT
T ss_pred CcEEEEEc----cCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCC
Confidence 55777663 3577889999999998733211 122222333333345443332 22232222233567776
Q ss_pred CCceeecCCCCCCcccceeEEEECCEEEEE--eccCCCcccCeEEEEeCCC-----CceeecCCCCCCccceEEEE--EC
Q psy11333 359 TNQWSCDVAPTTSCRTSVGVAVLDGFLYAV--GGQDGVQCLNHVERYDPKE-----NKWSRVAPMTTRRLGVAVAV--LG 429 (482)
Q Consensus 359 ~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~--GG~~~~~~~~~~~~yd~~~-----~~W~~~~~~~~~r~~~~~~~--~~ 429 (482)
.+-.-.- +.....-...-..+++|.+|.+ +|.. ..-...++..+ ..|.. -....++. -.
T Consensus 182 ~dp~f~~-~~~~~~~~~~~F~Sy~G~v~~~dlsg~~----~~~~~~~~~~t~~e~~~~WrP-------GG~Q~~A~~~~~ 249 (342)
T PF06433_consen 182 DDPLFEH-PAYSRDGGRLYFVSYEGNVYSADLSGDS----AKFGKPWSLLTDAEKADGWRP-------GGWQLIAYHAAS 249 (342)
T ss_dssp TS-B-S---EEETTTTEEEEEBTTSEEEEEEETTSS----EEEEEEEESS-HHHHHTTEEE--------SSS-EEEETTT
T ss_pred Ccccccc-cceECCCCeEEEEecCCEEEEEeccCCc----ccccCcccccCccccccCcCC-------cceeeeeecccc
Confidence 6542211 1111111123446788999985 3321 11223343332 34541 11122222 26
Q ss_pred CEEEEEcC--CCC--CCCCCeEEEEeCCCCc
Q psy11333 430 GFLYAIGG--SDG--QSPLNTVERFDPKLNR 456 (482)
Q Consensus 430 ~~i~v~GG--~~~--~~~~~~~~~y~~~~~~ 456 (482)
++|||+-- ..+ ...-..||+||+++.+
T Consensus 250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k 280 (342)
T PF06433_consen 250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK 280 (342)
T ss_dssp TEEEEEEEE--TT-TTS-EEEEEEEETTTTE
T ss_pred CeEEEEecCCCCCCccCCceEEEEEECCCCe
Confidence 79998831 111 1234679999999875
No 229
>KOG0292|consensus
Probab=39.34 E-value=5.4e+02 Score=28.00 Aligned_cols=131 Identities=18% Similarity=0.182 Sum_probs=70.6
Q ss_pred cEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCc-eeEEEECC--EEEEEecCCCCCCCCeEEEEeCCCCceee
Q psy11333 288 EVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCG-VGVAVLND--LLYAVGGHDGQSYLNSIERYDPQTNQWSC 364 (482)
Q Consensus 288 ~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~-~~~~~~~~--~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 364 (482)
--++|-||.+ ..-.+|+++ .++.|+.-. + .++++ .+++.+.. .+.+..|-+ +++-+||....+--+
T Consensus 218 lpliVSG~DD---RqVKlWrmn-etKaWEvDt-c-rgH~nnVssvlfhp~q~lIlSnsED-----ksirVwDm~kRt~v~ 286 (1202)
T KOG0292|consen 218 LPLIVSGADD---RQVKLWRMN-ETKAWEVDT-C-RGHYNNVSSVLFHPHQDLILSNSED-----KSIRVWDMTKRTSVQ 286 (1202)
T ss_pred cceEEecCCc---ceeeEEEec-cccceeehh-h-hcccCCcceEEecCccceeEecCCC-----ccEEEEeccccccee
Confidence 3567777742 223577776 467886522 1 22322 33444444 455555544 467889987665322
Q ss_pred cCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECCEEEEEcCCCCCCCC
Q psy11333 365 DVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPL 444 (482)
Q Consensus 365 ~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~ 444 (482)
. =.-...|++.-++--...+|..|= + +.+.+|..+ |...+.++.+|.+|.+-+
T Consensus 287 t-frrendRFW~laahP~lNLfAAgH-D-----sGm~VFkle-------------RErpa~~v~~n~LfYvkd------- 339 (1202)
T KOG0292|consen 287 T-FRRENDRFWILAAHPELNLFAAGH-D-----SGMIVFKLE-------------RERPAYAVNGNGLFYVKD------- 339 (1202)
T ss_pred e-eeccCCeEEEEEecCCcceeeeec-C-----CceEEEEEc-------------ccCceEEEcCCEEEEEcc-------
Confidence 2 112234555444444567777752 2 234555433 444567777777777754
Q ss_pred CeEEEEeCCCCc
Q psy11333 445 NTVERFDPKLNR 456 (482)
Q Consensus 445 ~~~~~y~~~~~~ 456 (482)
+-++.||..+.+
T Consensus 340 ~~i~~~d~~t~~ 351 (1202)
T KOG0292|consen 340 RFIRSYDLRTQK 351 (1202)
T ss_pred ceEEeeeccccc
Confidence 346667666543
No 230
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=38.83 E-value=2.1e+02 Score=23.02 Aligned_cols=65 Identities=20% Similarity=0.264 Sum_probs=41.4
Q ss_pred CEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEE---CCEEEEEcCCCCCCCCCeEEEEeCCCCc--e
Q psy11333 383 GFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVL---GGFLYAIGGSDGQSPLNTVERFDPKLNR--W 457 (482)
Q Consensus 383 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~y~~~~~~--W 457 (482)
..+.++|- .+.+..||...+.=-.-..+|.+........+ ...+.++||. ..+.-||-+.++ |
T Consensus 64 ~D~LliGt------~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGn------csi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 64 RDCLLIGT------QTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGN------CSIQGFDYEGNEIFW 131 (136)
T ss_pred cCEEEEec------cceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECce------EEEEEeCCCCcEEEE
Confidence 45677764 36799999998864444455555444444444 4478899985 457777765443 6
Q ss_pred ee
Q psy11333 458 TA 459 (482)
Q Consensus 458 ~~ 459 (482)
+-
T Consensus 132 tV 133 (136)
T PF14781_consen 132 TV 133 (136)
T ss_pred Ee
Confidence 54
No 231
>KOG3637|consensus
Probab=38.28 E-value=6.2e+02 Score=28.46 Aligned_cols=157 Identities=11% Similarity=0.076 Sum_probs=87.1
Q ss_pred CCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCC-CC----ceeecCCCCCCccc---ceeEE--EE--C-CEEEEEec
Q psy11333 324 RRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQ-TN----QWSCDVAPTTSCRT---SVGVA--VL--D-GFLYAVGG 390 (482)
Q Consensus 324 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~-~~----~W~~~~~~~~~~r~---~~~~~--~~--~-~~lyv~GG 390 (482)
.-.++++++.++.-.++|......+...++.++.. .. .+... +.....+. +++++ .+ + ...||.|-
T Consensus 210 ~Q~GfSa~~t~~~~v~lGApG~~~W~G~v~~~~~~~~~~~~~~~~~~-~~~~~~~~sYLGYsV~~g~f~~~~~~~~VaGA 288 (1030)
T KOG3637|consen 210 CQAGFSAAFTDEDGLVLGAPGAYYWKGGVFLYQSNLTLRHVTFINLL-PENADRDDSYLGYSVAVGVFSGPGTISFVAGA 288 (1030)
T ss_pred cccccceeecCCCcEEEeCCccccccCeEEEeccccccccccccccC-ccccccccceeeEEEEeeeccCCCceEEEecC
Confidence 34567777776667777877666677788888864 11 11112 22222211 23332 22 2 24555554
Q ss_pred cCCCcccCeEEEEeCCCCceeecCCCC----CCccceEEEEE----CCE-EEEEcC--C-C-CCCCCCeEEEEeCCCCc-
Q psy11333 391 QDGVQCLNHVERYDPKENKWSRVAPMT----TRRLGVAVAVL----GGF-LYAIGG--S-D-GQSPLNTVERFDPKLNR- 456 (482)
Q Consensus 391 ~~~~~~~~~~~~yd~~~~~W~~~~~~~----~~r~~~~~~~~----~~~-i~v~GG--~-~-~~~~~~~~~~y~~~~~~- 456 (482)
-..+.....+..|+...+.|..+..+. -.-+++++++. ||. =.++|- + . +......||+|=-....
T Consensus 289 Pr~~~~~G~v~if~~~~~~~~~~~~~~GeQ~GSYFG~sl~~vDlNgDG~tDLLVGAP~y~~~~~~e~GrVYVy~~~~~~~ 368 (1030)
T KOG3637|consen 289 PRYNHTGGKVYIFQLSGKSLRPLQVLRGEQIGSYFGYSLAAVDLNGDGLTDLLVGAPLYFERDRYEVGRVYVYLNGGLGL 368 (1030)
T ss_pred ccccCcccEEEEEeccccccceeeeeeeeeehhhcCeeEEEEEcCCCCCcceEEecCccccCCCCcceEEEEEEecCCCC
Confidence 333333367889998888888776542 23456666655 221 134433 1 1 12234678888655433
Q ss_pred eeec-----CCCCcCCCceeEEEEcCCCCC
Q psy11333 457 WTAM-----APMSTRRKHLGCAVFVGDNGA 481 (482)
Q Consensus 457 W~~~-----~~~~~~r~~~~~~~~~~~~~~ 481 (482)
|..- +.-|..|+|.+++++++-+.|
T Consensus 369 ~~~~~~L~~~~~~~~RFG~Ala~LGDlN~D 398 (1030)
T KOG3637|consen 369 FPEQITLRGPGGPSGRFGSALAALGDLNQD 398 (1030)
T ss_pred cccceeEecCCCcccchhhhhhcccCcccC
Confidence 2221 233578999999999987765
No 232
>KOG0276|consensus
Probab=38.23 E-value=1.6e+02 Score=30.05 Aligned_cols=80 Identities=20% Similarity=0.289 Sum_probs=43.2
Q ss_pred EeCCCCCeeeccCCCC------CCCceeEEEE--CCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEE
Q psy11333 308 YDPQSSDWKIVAPMSK------RRCGVGVAVL--NDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVA 379 (482)
Q Consensus 308 ~d~~~~~W~~~~~~~~------~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~ 379 (482)
+|-.-+.|+..++-|. .+.--++..+ +++-|++.|.+. .++-+||.+|++.-+. +.-.-...+.+
T Consensus 161 LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD----~tiKvWDyQtk~CV~T---LeGHt~Nvs~v 233 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD----LTIKVWDYQTKSCVQT---LEGHTNNVSFV 233 (794)
T ss_pred ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC----ceEEEeecchHHHHHH---hhcccccceEE
Confidence 3444456876665442 1111223333 667888888765 4688899998876432 22122233444
Q ss_pred EECC--EEEEEeccCCC
Q psy11333 380 VLDG--FLYAVGGQDGV 394 (482)
Q Consensus 380 ~~~~--~lyv~GG~~~~ 394 (482)
.+.. -|++.|+.++.
T Consensus 234 ~fhp~lpiiisgsEDGT 250 (794)
T KOG0276|consen 234 FFHPELPIIISGSEDGT 250 (794)
T ss_pred EecCCCcEEEEecCCcc
Confidence 4433 36667776553
No 233
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=37.65 E-value=2.6e+02 Score=23.94 Aligned_cols=93 Identities=12% Similarity=0.069 Sum_probs=48.8
Q ss_pred CCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeec
Q psy11333 334 NDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRV 413 (482)
Q Consensus 334 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 413 (482)
++.+.++-|.. ...+..||.+...=..+ +......-...-+|+..++||.++. ...+..||.. +++.+
T Consensus 71 g~~favi~g~~----~~~v~lyd~~~~~i~~~----~~~~~n~i~wsP~G~~l~~~g~~n~--~G~l~~wd~~--~~~~i 138 (194)
T PF08662_consen 71 GNEFAVIYGSM----PAKVTLYDVKGKKIFSF----GTQPRNTISWSPDGRFLVLAGFGNL--NGDLEFWDVR--KKKKI 138 (194)
T ss_pred CCEEEEEEccC----CcccEEEcCcccEeEee----cCCCceEEEECCCCCEEEEEEccCC--CcEEEEEECC--CCEEe
Confidence 45666665532 23688999963332222 2221222223347888888886532 1458889987 44455
Q ss_pred CCCCCCccceEEEEECCEEEEEcCC
Q psy11333 414 APMTTRRLGVAVAVLGGFLYAIGGS 438 (482)
Q Consensus 414 ~~~~~~r~~~~~~~~~~~i~v~GG~ 438 (482)
.....+......-.-+|+.++....
T Consensus 139 ~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 139 STFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred eccccCcEEEEEEcCCCCEEEEEEe
Confidence 5444333222222226666665543
No 234
>KOG0640|consensus
Probab=35.84 E-value=3.7e+02 Score=25.06 Aligned_cols=84 Identities=20% Similarity=0.235 Sum_probs=41.6
Q ss_pred CeEEEEeCCCCceeecCCCCCCcccce-eEEE--ECCEEEEEeccCCCcccCeEEEEeCCCCceeec-CCCCCCccceEE
Q psy11333 350 NSIERYDPQTNQWSCDVAPTTSCRTSV-GVAV--LDGFLYAVGGQDGVQCLNHVERYDPKENKWSRV-APMTTRRLGVAV 425 (482)
Q Consensus 350 ~~~~~yd~~~~~W~~~~~~~~~~r~~~-~~~~--~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~r~~~~~ 425 (482)
..+..||..|-+.--- ..+....... ..+- ..++||+.|..+|. +-.||-..++.... ..-..+-...++
T Consensus 238 p~~rlYdv~T~Qcfvs-anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~-----IklwDGVS~rCv~t~~~AH~gsevcSa 311 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVS-ANPDDQHTGAITQVRYSSTGSLYVTASKDGA-----IKLWDGVSNRCVRTIGNAHGGSEVCSA 311 (430)
T ss_pred CceeEEeccceeEeee-cCcccccccceeEEEecCCccEEEEeccCCc-----EEeeccccHHHHHHHHhhcCCceeeeE
Confidence 4678899988774322 2322222211 2222 25899999987653 55566665554221 111112222222
Q ss_pred EEE-CCEEEEEcCCC
Q psy11333 426 AVL-GGFLYAIGGSD 439 (482)
Q Consensus 426 ~~~-~~~i~v~GG~~ 439 (482)
... |++..+-.|.+
T Consensus 312 ~Ftkn~kyiLsSG~D 326 (430)
T KOG0640|consen 312 VFTKNGKYILSSGKD 326 (430)
T ss_pred EEccCCeEEeecCCc
Confidence 222 66666666653
No 235
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=35.43 E-value=4.2e+02 Score=25.60 Aligned_cols=102 Identities=18% Similarity=0.184 Sum_probs=54.9
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCCCe-eeccCCCCCCCceeEEEE---CCEEEEEecCCCCCCCCeEEEEeCCCCce
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSSDW-KIVAPMSKRRCGVGVAVL---NDLLYAVGGHDGQSYLNSIERYDPQTNQW 362 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 362 (482)
++.+||.-. -...+...|..+++- ..++. ....|+...+ +..+|+.+. + ..+-++|+.+++=
T Consensus 5 ~~l~~V~~~-----~~~~v~viD~~t~~~~~~i~~---~~~~h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~~~ 70 (369)
T PF02239_consen 5 GNLFYVVER-----GSGSVAVIDGATNKVVARIPT---GGAPHAGLKFSPDGRYLYVANR-D-----GTVSVIDLATGKV 70 (369)
T ss_dssp GGEEEEEEG-----GGTEEEEEETTT-SEEEEEE----STTEEEEEE-TT-SSEEEEEET-T-----SEEEEEETTSSSE
T ss_pred ccEEEEEec-----CCCEEEEEECCCCeEEEEEcC---CCCceeEEEecCCCCEEEEEcC-C-----CeEEEEECCcccE
Confidence 455555532 225788999988763 33333 2222544433 456899863 3 3689999999873
Q ss_pred eecCCCCCCcccceeEE-EECCEEEEEeccCCCcccCeEEEEeCCCCc
Q psy11333 363 SCDVAPTTSCRTSVGVA-VLDGFLYAVGGQDGVQCLNHVERYDPKENK 409 (482)
Q Consensus 363 ~~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~ 409 (482)
- ...+.+....+++ +.+|+..+.+.+. .+.+..+|.++.+
T Consensus 71 v---~~i~~G~~~~~i~~s~DG~~~~v~n~~----~~~v~v~D~~tle 111 (369)
T PF02239_consen 71 V---ATIKVGGNPRGIAVSPDGKYVYVANYE----PGTVSVIDAETLE 111 (369)
T ss_dssp E---EEEE-SSEEEEEEE--TTTEEEEEEEE----TTEEEEEETTT--
T ss_pred E---EEEecCCCcceEEEcCCCCEEEEEecC----CCceeEecccccc
Confidence 2 2233344444444 3466655555432 3567888877653
No 236
>KOG0265|consensus
Probab=34.99 E-value=3.7e+02 Score=24.89 Aligned_cols=60 Identities=22% Similarity=0.340 Sum_probs=35.0
Q ss_pred CcEEEEeccccCCCCCceeEE-EeCCCCCeeeccCCCCCCCceeEEEE-------CCEEEEEecCCCCCCCCeEEEEeCC
Q psy11333 287 GEVLFAVGGWCSGDAISSVER-YDPQSSDWKIVAPMSKRRCGVGVAVL-------NDLLYAVGGHDGQSYLNSIERYDPQ 358 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~-~d~~~~~W~~~~~~~~~~~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~yd~~ 358 (482)
++..++-||.+..- -+|. |.-..|.|..- +|+.|+. +++||-+| .+ +++..||.+
T Consensus 58 ~gs~~aSgG~Dr~I---~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~g-tD-----k~v~~wD~~ 120 (338)
T KOG0265|consen 58 DGSCFASGGSDRAI---VLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCG-TD-----KTVRGWDAE 120 (338)
T ss_pred CCCeEeecCCcceE---EEEeccccccceeeec--------cccceeEeeeeccCCCEEEEec-CC-----ceEEEEecc
Confidence 56777777754211 1343 56677778642 4444432 34555554 33 579999999
Q ss_pred CCcee
Q psy11333 359 TNQWS 363 (482)
Q Consensus 359 ~~~W~ 363 (482)
+++-.
T Consensus 121 tG~~~ 125 (338)
T KOG0265|consen 121 TGKRI 125 (338)
T ss_pred cceee
Confidence 88743
No 237
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=34.38 E-value=4.7e+02 Score=25.88 Aligned_cols=148 Identities=11% Similarity=0.010 Sum_probs=73.8
Q ss_pred ceeEEEeCCCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEEC
Q psy11333 303 SSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLD 382 (482)
Q Consensus 303 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~ 382 (482)
..++.+|..+..=..+...+..-..++-..-+.+|.+..-.+ ...+++.+|..+++=+++ .... ++.......-+
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rd---g~~~iy~~dl~~~~~~~L-t~~~-gi~~~Ps~spd 292 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRD---GSPDIYLMDLDGKNLPRL-TNGF-GINTSPSWSPD 292 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCC---CCccEEEEcCCCCcceec-ccCC-ccccCccCCCC
Confidence 567888888877655554332222222222233443333222 234689999988873334 2221 22222223334
Q ss_pred C-EEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECCEEEEEcCCCCCCCCCeEEEEeCCCCc-eeec
Q psy11333 383 G-FLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNR-WTAM 460 (482)
Q Consensus 383 ~-~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~~-W~~~ 460 (482)
| +|+..-...+ ...++.||+....=+.+..-..... .....-+|+.+++-+.++.. ..+..+|+.++. |+.+
T Consensus 293 G~~ivf~Sdr~G---~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~~~~g~--~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 293 GSKIVFTSDRGG---RPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFESSSGGQ--WDIDKNDLASGGKIRIL 366 (425)
T ss_pred CCEEEEEeCCCC---CcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEeccCCc--eeeEEeccCCCCcEEEc
Confidence 4 4444322222 2478899888765444432111111 33333355544444443222 678888887666 8776
Q ss_pred C
Q psy11333 461 A 461 (482)
Q Consensus 461 ~ 461 (482)
.
T Consensus 367 t 367 (425)
T COG0823 367 T 367 (425)
T ss_pred c
Confidence 4
No 238
>PRK01742 tolB translocation protein TolB; Provisional
Probab=34.34 E-value=4.6e+02 Score=25.81 Aligned_cols=97 Identities=13% Similarity=0.058 Sum_probs=48.2
Q ss_pred CeEEEEeCCCCceeecCCCCCCcccceeEEEECCEEEEEec-cCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEE
Q psy11333 350 NSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGG-QDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVL 428 (482)
Q Consensus 350 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG-~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 428 (482)
..++.+|..+++-+.+ ...+. ........-+|+..+++. .++. ..++.+|+.+.....+..-... .......-
T Consensus 228 ~~i~i~dl~tg~~~~l-~~~~g-~~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wSp 301 (429)
T PRK01742 228 SQLVVHDLRSGARKVV-ASFRG-HNGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGGTPSQLTSGAGN-NTEPSWSP 301 (429)
T ss_pred cEEEEEeCCCCceEEE-ecCCC-ccCceeECCCCCEEEEEEecCCc---EEEEEEECCCCCeEeeccCCCC-cCCEEECC
Confidence 4689999988776655 33321 111222333555444433 3332 3588899887776665432211 11112222
Q ss_pred CCE-EEEEcCCCCCCCCCeEEEEeCCCC
Q psy11333 429 GGF-LYAIGGSDGQSPLNTVERFDPKLN 455 (482)
Q Consensus 429 ~~~-i~v~GG~~~~~~~~~~~~y~~~~~ 455 (482)
+|+ |++.....+. ..++.++..+.
T Consensus 302 DG~~i~f~s~~~g~---~~I~~~~~~~~ 326 (429)
T PRK01742 302 DGQSILFTSDRSGS---PQVYRMSASGG 326 (429)
T ss_pred CCCEEEEEECCCCC---ceEEEEECCCC
Confidence 444 5555433322 35666665443
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=33.52 E-value=3.1e+02 Score=23.51 Aligned_cols=92 Identities=12% Similarity=0.081 Sum_probs=45.3
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCceeecC
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDV 366 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 366 (482)
++.+.++-|.. + ..+..||...+. +..++......-.-.-+|+..++||.++. ...++.||..+. +.+
T Consensus 71 g~~favi~g~~---~-~~v~lyd~~~~~---i~~~~~~~~n~i~wsP~G~~l~~~g~~n~--~G~l~~wd~~~~--~~i- 138 (194)
T PF08662_consen 71 GNEFAVIYGSM---P-AKVTLYDVKGKK---IFSFGTQPRNTISWSPDGRFLVLAGFGNL--NGDLEFWDVRKK--KKI- 138 (194)
T ss_pred CCEEEEEEccC---C-cccEEEcCcccE---eEeecCCCceEEEECCCCCEEEEEEccCC--CcEEEEEECCCC--EEe-
Confidence 45555554421 1 267889986333 23333222222222237788888886532 246899999843 444
Q ss_pred CCCCCcccceeEEEECCEEEEEec
Q psy11333 367 APTTSCRTSVGVAVLDGFLYAVGG 390 (482)
Q Consensus 367 ~~~~~~r~~~~~~~~~~~lyv~GG 390 (482)
.....+........-+|+.++...
T Consensus 139 ~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 139 STFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred eccccCcEEEEEEcCCCCEEEEEE
Confidence 222222222222233566555543
No 240
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=33.29 E-value=2.6e+02 Score=22.50 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=34.5
Q ss_pred CEEEEEecCCCCCCCCeEEEEeCCCCc---eeecCCCCCCcccceeEEEE---CCEEEEEeccCCCcccCeEEEEeCCCC
Q psy11333 335 DLLYAVGGHDGQSYLNSIERYDPQTNQ---WSCDVAPTTSCRTSVGVAVL---DGFLYAVGGQDGVQCLNHVERYDPKEN 408 (482)
Q Consensus 335 ~~iyv~GG~~~~~~~~~~~~yd~~~~~---W~~~~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~yd~~~~ 408 (482)
..+.++|- .+.+..||...|. ++++ +.+........+ ...+.++||. .++.-||-..+
T Consensus 64 ~D~LliGt------~t~llaYDV~~N~d~Fyke~----~DGvn~i~~g~~~~~~~~l~ivGGn------csi~Gfd~~G~ 127 (136)
T PF14781_consen 64 RDCLLIGT------QTSLLAYDVENNSDLFYKEV----PDGVNAIVIGKLGDIPSPLVIVGGN------CSIQGFDYEGN 127 (136)
T ss_pred cCEEEEec------cceEEEEEcccCchhhhhhC----ccceeEEEEEecCCCCCcEEEECce------EEEEEeCCCCc
Confidence 46777775 3568999998886 4444 333332223233 4578888884 35566665543
No 241
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=32.04 E-value=3.2e+02 Score=23.95 Aligned_cols=60 Identities=20% Similarity=0.404 Sum_probs=41.9
Q ss_pred eeEEEECCEEEEEeccCCCcccCeEEEEeCCCCc--eeecCCCCCCccceEEEEECCEEEEEcCCC
Q psy11333 376 VGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENK--WSRVAPMTTRRLGVAVAVLGGFLYAIGGSD 439 (482)
Q Consensus 376 ~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~ 439 (482)
.++...+|.++..-|.-+. +.+.++|+.+.+ |+.--+ |..-++-+++.+++.+|.+-=.+
T Consensus 49 QGL~~~~g~i~esTG~yg~---S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~e 110 (262)
T COG3823 49 QGLEYLDGHILESTGLYGF---SKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKE 110 (262)
T ss_pred cceeeeCCEEEEecccccc---ceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEecc
Confidence 3566778888888886543 578899998654 543333 34556777888899999996443
No 242
>KOG0279|consensus
Probab=31.67 E-value=4.1e+02 Score=24.37 Aligned_cols=93 Identities=15% Similarity=0.183 Sum_probs=52.1
Q ss_pred CCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEE--C--CEEEEEeccCCCcccCeEEEEeCCCCc
Q psy11333 334 NDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVL--D--GFLYAVGGQDGVQCLNHVERYDPKENK 409 (482)
Q Consensus 334 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~yd~~~~~ 409 (482)
++.-.|.|..+ +++-.||...+.=..+...+. |.+..++-+ + +-+++.+|.+ .++-.||+.+-+
T Consensus 116 dn~qivSGSrD-----kTiklwnt~g~ck~t~~~~~~--~~WVscvrfsP~~~~p~Ivs~s~D-----ktvKvWnl~~~~ 183 (315)
T KOG0279|consen 116 DNRQIVSGSRD-----KTIKLWNTLGVCKYTIHEDSH--REWVSCVRFSPNESNPIIVSASWD-----KTVKVWNLRNCQ 183 (315)
T ss_pred CCceeecCCCc-----ceeeeeeecccEEEEEecCCC--cCcEEEEEEcCCCCCcEEEEccCC-----ceEEEEccCCcc
Confidence 55556666544 567888887775444412221 555555443 2 4466666654 457788877654
Q ss_pred eeecCCCCCC--cc-ceEEEEECCEEEEEcCCCCC
Q psy11333 410 WSRVAPMTTR--RL-GVAVAVLGGFLYAIGGSDGQ 441 (482)
Q Consensus 410 W~~~~~~~~~--r~-~~~~~~~~~~i~v~GG~~~~ 441 (482)
+..+-.+ -+ ....+..+|.+.+-||.++.
T Consensus 184 ---l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~ 215 (315)
T KOG0279|consen 184 ---LRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE 215 (315)
T ss_pred ---hhhccccccccEEEEEECCCCCEEecCCCCce
Confidence 2222222 22 22233449999999998763
No 243
>KOG0322|consensus
Probab=31.34 E-value=3.3e+02 Score=24.79 Aligned_cols=27 Identities=22% Similarity=0.559 Sum_probs=19.5
Q ss_pred EECCEEEEEcCCCCCCCCCeEEEEeCCCCceeecCCC
Q psy11333 427 VLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPM 463 (482)
Q Consensus 427 ~~~~~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~~~~ 463 (482)
..+++|+...|+++ .+.+|+ |..+.++
T Consensus 260 RpD~KIlATAGWD~-----RiRVys-----wrtl~pL 286 (323)
T KOG0322|consen 260 RPDGKILATAGWDH-----RIRVYS-----WRTLNPL 286 (323)
T ss_pred ccCCcEEeecccCC-----cEEEEE-----eccCCch
Confidence 44999999999986 467774 5555544
No 244
>KOG0306|consensus
Probab=30.22 E-value=4.7e+02 Score=27.65 Aligned_cols=65 Identities=15% Similarity=0.238 Sum_probs=37.2
Q ss_pred eEEEECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEE-CCEEEEEeccCCCcccCeEEEEeCCC
Q psy11333 329 GVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVL-DGFLYAVGGQDGVQCLNHVERYDPKE 407 (482)
Q Consensus 329 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~ 407 (482)
+.++.++++.+..|.+ .++-.||..+.+--+- ++.. +-.++..+ +++..++|+.+| .+..||...
T Consensus 378 sl~vS~d~~~~~Sga~-----~SikiWn~~t~kciRT---i~~~-y~l~~~Fvpgd~~Iv~G~k~G-----el~vfdlaS 443 (888)
T KOG0306|consen 378 SLCVSSDSILLASGAG-----ESIKIWNRDTLKCIRT---ITCG-YILASKFVPGDRYIVLGTKNG-----ELQVFDLAS 443 (888)
T ss_pred EEEeecCceeeeecCC-----CcEEEEEccCcceeEE---eccc-cEEEEEecCCCceEEEeccCC-----ceEEEEeeh
Confidence 3455666666665533 3688999998775433 2333 33344434 555556665544 366777654
No 245
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=29.76 E-value=3.2e+02 Score=22.55 Aligned_cols=80 Identities=14% Similarity=0.221 Sum_probs=45.6
Q ss_pred EEECCEEEEEeccCCCcccCeEEEEeCCCCce-eecCCCCCCcc----ceEEEEE-CCEEEEEcCCCCCCCCCeEEEEeC
Q psy11333 379 AVLDGFLYAVGGQDGVQCLNHVERYDPKENKW-SRVAPMTTRRL----GVAVAVL-GGFLYAIGGSDGQSPLNTVERFDP 452 (482)
Q Consensus 379 ~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~r~----~~~~~~~-~~~i~v~GG~~~~~~~~~~~~y~~ 452 (482)
+.++|.+|=++..........+.+||..+.+. ..++ +|.... .....++ +++|-++--... ...-+||+.+-
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~-lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~-~~~~~IWvm~~ 79 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLP-LPFCNDDDDDSVSLSVVRGDCLCVLYQCDE-TSKIEIWVMKK 79 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEEC-CCCccCccCCEEEEEEecCCEEEEEEeccC-CccEEEEEEee
Confidence 45677777776543322222689999999999 5444 332222 2333233 678877743211 11246777662
Q ss_pred ---CCCceeec
Q psy11333 453 ---KLNRWTAM 460 (482)
Q Consensus 453 ---~~~~W~~~ 460 (482)
....|+.+
T Consensus 80 ~~~~~~SWtK~ 90 (164)
T PF07734_consen 80 YGYGKESWTKL 90 (164)
T ss_pred eccCcceEEEE
Confidence 26789886
No 246
>KOG0272|consensus
Probab=29.08 E-value=5.1e+02 Score=25.24 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=0.0
Q ss_pred EeCCCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEECCEEEE
Q psy11333 308 YDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYA 387 (482)
Q Consensus 308 ~d~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv 387 (482)
+|..+++=-....--..-.+..+.-.+|.+...||.+ +..-+||..+..-.-. -.--..--..-...-+|...+
T Consensus 288 WD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD-----~~~RvWDlRtgr~im~-L~gH~k~I~~V~fsPNGy~lA 361 (459)
T KOG0272|consen 288 WDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLD-----SLGRVWDLRTGRCIMF-LAGHIKEILSVAFSPNGYHLA 361 (459)
T ss_pred cccccchhhHhhcccccccceeEecCCCceeeccCcc-----chhheeecccCcEEEE-ecccccceeeEeECCCceEEe
Q ss_pred EeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEE---CCEEEEEcCCCCCCCCCeEEEEeCCCCceeecCCC
Q psy11333 388 VGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVL---GGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPM 463 (482)
Q Consensus 388 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~y~~~~~~W~~~~~~ 463 (482)
.||.+ +++-+||+...+= +-.||--..--+-+-+ .|+..+.+|++ +++-+| .+..|+.+.+|
T Consensus 362 Tgs~D-----nt~kVWDLR~r~~--ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD-----~t~kiW--s~~~~~~~ksL 426 (459)
T KOG0272|consen 362 TGSSD-----NTCKVWDLRMRSE--LYTIPAHSNLVSQVKYSPQEGYFLVTASYD-----NTVKIW--STRTWSPLKSL 426 (459)
T ss_pred ecCCC-----CcEEEeeeccccc--ceecccccchhhheEecccCCeEEEEcccC-----cceeee--cCCCcccchhh
No 247
>KOG0296|consensus
Probab=27.66 E-value=5.5e+02 Score=24.54 Aligned_cols=69 Identities=26% Similarity=0.320 Sum_probs=42.6
Q ss_pred CCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccc--eeEEEECCEEEEEeccCCCcccCeEEEEeCCCCcee
Q psy11333 334 NDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTS--VGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWS 411 (482)
Q Consensus 334 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~--~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~ 411 (482)
++.+.+-||-+ +..+.|+..++.|-.. ++..... .....++|.+.+.||..+.. .++.-+....+|.
T Consensus 75 ~~~l~aTGGgD-----D~AflW~~~~ge~~~e---ltgHKDSVt~~~FshdgtlLATGdmsG~v---~v~~~stg~~~~~ 143 (399)
T KOG0296|consen 75 NNNLVATGGGD-----DLAFLWDISTGEFAGE---LTGHKDSVTCCSFSHDGTLLATGDMSGKV---LVFKVSTGGEQWK 143 (399)
T ss_pred CCceEEecCCC-----ceEEEEEccCCcceeE---ecCCCCceEEEEEccCceEEEecCCCccE---EEEEcccCceEEE
Confidence 55677777755 4578999999987532 2222222 23346789999999987642 2334444455676
Q ss_pred ec
Q psy11333 412 RV 413 (482)
Q Consensus 412 ~~ 413 (482)
..
T Consensus 144 ~~ 145 (399)
T KOG0296|consen 144 LD 145 (399)
T ss_pred ee
Confidence 54
No 248
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=27.40 E-value=3.8e+02 Score=26.51 Aligned_cols=107 Identities=12% Similarity=-0.012 Sum_probs=59.3
Q ss_pred CCceeEEEeCCCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEE
Q psy11333 301 AISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAV 380 (482)
Q Consensus 301 ~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~ 380 (482)
-..++|.+|..+++-.++......-...+...-+..|+..-...+ ...++.+|++..+=++++.... .. ......
T Consensus 260 g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G---~p~I~~~~~~g~~~~riT~~~~-~~-~~p~~S 334 (425)
T COG0823 260 GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGG---RPQIYLYDLEGSQVTRLTFSGG-GN-SNPVWS 334 (425)
T ss_pred CCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCC---CcceEEECCCCCceeEeeccCC-CC-cCccCC
Confidence 335789999999884443333222222222222444544432222 2379999999888776622221 21 144445
Q ss_pred ECCEEEEEeccCCCcccCeEEEEeCCCCc-eeecC
Q psy11333 381 LDGFLYAVGGQDGVQCLNHVERYDPKENK-WSRVA 414 (482)
Q Consensus 381 ~~~~lyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~ 414 (482)
-+|+.+++-+..++. ..+..+|+.++. |..+.
T Consensus 335 pdG~~i~~~~~~~g~--~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 335 PDGDKIVFESSSGGQ--WDIDKNDLASGGKIRILT 367 (425)
T ss_pred CCCCEEEEEeccCCc--eeeEEeccCCCCcEEEcc
Confidence 566655555433222 578889998776 87765
No 249
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=27.07 E-value=4.4e+02 Score=26.53 Aligned_cols=88 Identities=22% Similarity=0.246 Sum_probs=51.5
Q ss_pred CCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCccccee
Q psy11333 298 SGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVG 377 (482)
Q Consensus 298 ~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~ 377 (482)
.+..++.++.+||.+..=-..+++..-| +......++.+.+++|..+.... ...-.|+.+..-..- +.-+..+.+ .
T Consensus 370 ~~~~ls~LvllD~~tg~~l~~S~~~~Ir-~r~~~~~~~~~vaI~g~~G~~~i-kLvlid~~tLev~ke-s~~~i~~~S-~ 445 (489)
T PF05262_consen 370 PNHYLSELVLLDSDTGDTLKRSPVNGIR-GRTFYEREDDLVAIAGCSGNAAI-KLVLIDPETLEVKKE-SEDEISWQS-S 445 (489)
T ss_pred CCCcceeEEEEeCCCCceecccccceec-cceeEEcCCCEEEEeccCCchhe-EEEecCcccceeeee-ccccccccC-c
Confidence 4567789999999998655445554433 23444568888899988554332 344457777764433 222222221 4
Q ss_pred EEEECCEEEEEe
Q psy11333 378 VAVLDGFLYAVG 389 (482)
Q Consensus 378 ~~~~~~~lyv~G 389 (482)
+.+.++.+|++-
T Consensus 446 l~~~~~~iyaVv 457 (489)
T PF05262_consen 446 LIVDGQMIYAVV 457 (489)
T ss_pred eEEcCCeEEEEE
Confidence 445566666543
No 250
>KOG4591|consensus
Probab=26.29 E-value=72 Score=27.23 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHhhcCee-eeccccHhhHHHHhcccChhhHHHHHHHHHhccCC
Q psy11333 85 DDVAMDNLIEFCYTSHI-TVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLD 136 (482)
Q Consensus 85 ~~~~~~~~l~~~y~~~~-~~~~~~~~~ll~~a~~~~~~~L~~~~~~~i~~~~~ 136 (482)
...+++.+.+-|-.+.. .++.+||+.+++.|+.+....|.+.|.+.|....+
T Consensus 147 n~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~ 199 (280)
T KOG4591|consen 147 NRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWD 199 (280)
T ss_pred HHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 44556777777777653 67899999999999999999999999999887654
No 251
>KOG0639|consensus
Probab=25.65 E-value=2.3e+02 Score=28.25 Aligned_cols=107 Identities=20% Similarity=0.265 Sum_probs=0.0
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCC--CCCceeEEEECCEEEEEecCCCCCCCCeEEEEeCCCCceee
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSK--RRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSC 364 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~--~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 364 (482)
++.-.++|| ..+++-++|...-+-.....++. +-+++-++..|.++...--.++ .+-+||..++.-.+
T Consensus 476 dgrtLivGG-----eastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdG-----nI~vwDLhnq~~Vr 545 (705)
T KOG0639|consen 476 DGRTLIVGG-----EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDG-----NIAVWDLHNQTLVR 545 (705)
T ss_pred CCceEEecc-----ccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCC-----cEEEEEcccceeee
Q ss_pred cCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCc
Q psy11333 365 DVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENK 409 (482)
Q Consensus 365 ~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~ 409 (482)
--..-+.+-....+.-.+.+|| .||.+ +++-+||..+.+
T Consensus 546 qfqGhtDGascIdis~dGtklW-TGGlD-----ntvRcWDlregr 584 (705)
T KOG0639|consen 546 QFQGHTDGASCIDISKDGTKLW-TGGLD-----NTVRCWDLREGR 584 (705)
T ss_pred cccCCCCCceeEEecCCCceee-cCCCc-----cceeehhhhhhh
No 252
>KOG0319|consensus
Probab=24.19 E-value=8.7e+02 Score=25.68 Aligned_cols=138 Identities=17% Similarity=0.178 Sum_probs=67.8
Q ss_pred CCCcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEEE--CCEEEEEecCCCCCCCCeEEEEeCCCCce
Q psy11333 285 RRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVL--NDLLYAVGGHDGQSYLNSIERYDPQTNQW 362 (482)
Q Consensus 285 ~~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 362 (482)
.-+++|+..|+.+ .+..+|.++ .. .....+.-.+.+.-.+.+ ++++..-..- -.++-.|...+...
T Consensus 472 a~ndkLiAT~SqD---ktaKiW~le--~~--~l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg-----D~TvKIW~is~fSC 539 (775)
T KOG0319|consen 472 APNDKLIATGSQD---KTAKIWDLE--QL--RLLGVLSGHTRGVWCVSFSKNDQLLATCSG-----DKTVKIWSISTFSC 539 (775)
T ss_pred cCCCceEEecccc---cceeeeccc--Cc--eEEEEeeCCccceEEEEeccccceeEeccC-----CceEEEEEecccee
Confidence 3467888888743 233455444 22 222333333333333332 3334433221 24677788777665
Q ss_pred eecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCCCCccceEEEEECCEEEEEcCCCC
Q psy11333 363 SCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDG 440 (482)
Q Consensus 363 ~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~ 440 (482)
.+--..-..... -+...-+|+-++.+|.+|- +-.|+.+++....--+-...|..+-++.-++.+++.||-++
T Consensus 540 lkT~eGH~~aVl-ra~F~~~~~qliS~~adGl-----iKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg 611 (775)
T KOG0319|consen 540 LKTFEGHTSAVL-RASFIRNGKQLISAGADGL-----IKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDG 611 (775)
T ss_pred eeeecCccceeE-eeeeeeCCcEEEeccCCCc-----EEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCe
Confidence 322010000000 1223346788888886552 45677777766544444444544444444555677777654
No 253
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=23.94 E-value=1.5e+02 Score=22.10 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHhhCCCHHHHHHHHHHHHHh
Q psy11333 137 PSNCLGIRAFADTHSCRDLLRIADKFTQHN 166 (482)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~L~~~~~~~i~~~ 166 (482)
.+++..++..|..+..+.|.+.|.+++.++
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 678999999999999999999999998765
No 254
>KOG3881|consensus
Probab=23.71 E-value=6.7e+02 Score=24.20 Aligned_cols=150 Identities=13% Similarity=0.114 Sum_probs=71.6
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCCCeeec--cC----CCCCCCceeEEEECC---EEEEEecCCCCCCCCeEEEEeC
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIV--AP----MSKRRCGVGVAVLND---LLYAVGGHDGQSYLNSIERYDP 357 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~--~~----~~~~~~~~~~~~~~~---~iyv~GG~~~~~~~~~~~~yd~ 357 (482)
...|+.+||.+. ...-.+|...-..+.|+-- ++ |..|...-.+..+.+ .-++-+- ....+-.||+
T Consensus 160 ~p~Iva~GGke~-~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T-----~~hqvR~YDt 233 (412)
T KOG3881|consen 160 DPYIVATGGKEN-INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT-----RYHQVRLYDT 233 (412)
T ss_pred CCceEecCchhc-ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEe-----cceeEEEecC
Confidence 457888899653 1122344444455667532 21 222333333333333 2222221 1346889999
Q ss_pred CCCce--eecCCCCCCcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceeecCCCC-CCccceEEEEE-CCEEE
Q psy11333 358 QTNQW--SCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMT-TRRLGVAVAVL-GGFLY 433 (482)
Q Consensus 358 ~~~~W--~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~-~~~i~ 433 (482)
..++= ... +.+..+....+....++.||+.- . ...+-.||..+.+--... +- ..-+-.++... +..+.
T Consensus 234 ~~qRRPV~~f-d~~E~~is~~~l~p~gn~Iy~gn-~-----~g~l~~FD~r~~kl~g~~-~kg~tGsirsih~hp~~~~l 305 (412)
T KOG3881|consen 234 RHQRRPVAQF-DFLENPISSTGLTPSGNFIYTGN-T-----KGQLAKFDLRGGKLLGCG-LKGITGSIRSIHCHPTHPVL 305 (412)
T ss_pred cccCcceeEe-ccccCcceeeeecCCCcEEEEec-c-----cchhheecccCceeeccc-cCCccCCcceEEEcCCCceE
Confidence 97752 122 44455555555555566666542 1 235667888766421110 00 00001111222 33577
Q ss_pred EEcCCCCCCCCCeEEEEeCCCC
Q psy11333 434 AIGGSDGQSPLNTVERFDPKLN 455 (482)
Q Consensus 434 v~GG~~~~~~~~~~~~y~~~~~ 455 (482)
..+|-+ .-+.+||.++.
T Consensus 306 as~GLD-----RyvRIhD~ktr 322 (412)
T KOG3881|consen 306 ASCGLD-----RYVRIHDIKTR 322 (412)
T ss_pred Eeeccc-----eeEEEeecccc
Confidence 777754 33666776653
No 255
>KOG0271|consensus
Probab=23.66 E-value=4.4e+02 Score=25.35 Aligned_cols=95 Identities=24% Similarity=0.347 Sum_probs=0.0
Q ss_pred CceeEEEE------CCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeEEEE--CCEEEEEeccCCCccc
Q psy11333 326 CGVGVAVL------NDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVL--DGFLYAVGGQDGVQCL 397 (482)
Q Consensus 326 ~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~ 397 (482)
.+|+-+++ +++-.+.|+-+ .++-.||+.|. +.. -.+.-.+.+.-++.. +|+..+.|..++
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD-----~TvR~WD~~Te--Tp~-~t~KgH~~WVlcvawsPDgk~iASG~~dg---- 179 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGD-----TTVRLWDLDTE--TPL-FTCKGHKNWVLCVAWSPDGKKIASGSKDG---- 179 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCC-----ceEEeeccCCC--Ccc-eeecCCccEEEEEEECCCcchhhccccCC----
Q ss_pred CeEEEEeCCCCc-----------------eeecCCCCCCccceEEEEECCEEEE
Q psy11333 398 NHVERYDPKENK-----------------WSRVAPMTTRRLGVAVAVLGGFLYA 434 (482)
Q Consensus 398 ~~~~~yd~~~~~-----------------W~~~~~~~~~r~~~~~~~~~~~i~v 434 (482)
++-.|||++++ |+.+---|..| ..+...-+|.+.|
T Consensus 180 -~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrI 231 (480)
T KOG0271|consen 180 -SIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRI 231 (480)
T ss_pred -eEEEecCCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEE
No 256
>KOG1538|consensus
Probab=23.65 E-value=2.5e+02 Score=29.06 Aligned_cols=95 Identities=25% Similarity=0.335 Sum_probs=52.2
Q ss_pred CcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCC-CceeEEE-ECCEEEEEecCCCC--------------CCCC
Q psy11333 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRR-CGVGVAV-LNDLLYAVGGHDGQ--------------SYLN 350 (482)
Q Consensus 287 ~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~-~~~~~~~-~~~~iyv~GG~~~~--------------~~~~ 350 (482)
|..+.+..| +.++.||+....- +.++.... .-.+++. -+|+.|..||.+.. ...+
T Consensus 24 GsqL~lAAg-------~rlliyD~ndG~l--lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D 94 (1081)
T KOG1538|consen 24 GTQLILAAG-------SRLLVYDTSDGTL--LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHND 94 (1081)
T ss_pred CceEEEecC-------CEEEEEeCCCccc--ccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCC
Confidence 446666666 5789999988764 22332111 1223333 48899999986420 0112
Q ss_pred --eEEEEeCCCCc-----------eeecCCC----CCCcccceeEEEECCEEEEEec
Q psy11333 351 --SIERYDPQTNQ-----------WSCDVAP----TTSCRTSVGVAVLDGFLYAVGG 390 (482)
Q Consensus 351 --~~~~yd~~~~~-----------W~~~~~~----~~~~r~~~~~~~~~~~lyv~GG 390 (482)
.+..|||-+.. |+.-... -...|...++..-+|.++++|=
T Consensus 95 ~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 95 AIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGM 151 (1081)
T ss_pred eeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEec
Confidence 34457776654 5532111 1234444555566888888874
No 257
>KOG0274|consensus
Probab=23.23 E-value=8.3e+02 Score=25.10 Aligned_cols=109 Identities=18% Similarity=0.291 Sum_probs=60.6
Q ss_pred EEECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccc-eeEEEECC-EEEEEeccCCCcccCeEEEEeCCCC
Q psy11333 331 AVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTS-VGVAVLDG-FLYAVGGQDGVQCLNHVERYDPKEN 408 (482)
Q Consensus 331 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~-~~~~~~~~-~lyv~GG~~~~~~~~~~~~yd~~~~ 408 (482)
+.+++.+.+.|.+++ +|-+||+.+.+.-.. +. ++.+ --...+++ ..++.|+.+ ..+..||+.+.
T Consensus 337 v~~~~~~lvsgs~d~-----~v~VW~~~~~~cl~s---l~-gH~~~V~sl~~~~~~~~~Sgs~D-----~~IkvWdl~~~ 402 (537)
T KOG0274|consen 337 VQLDEPLLVSGSYDG-----TVKVWDPRTGKCLKS---LS-GHTGRVYSLIVDSENRLLSGSLD-----TTIKVWDLRTK 402 (537)
T ss_pred EEecCCEEEEEecCc-----eEEEEEhhhceeeee---ec-CCcceEEEEEecCcceEEeeeec-----cceEeecCCch
Confidence 335777777787664 688999997664322 11 1111 11124556 667777764 45888888876
Q ss_pred ceeecCCCCCCccceEEEEECCEEEEEcCCCCCCCCCeEEEEeCCCCceee
Q psy11333 409 KWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTA 459 (482)
Q Consensus 409 ~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y~~~~~~W~~ 459 (482)
. ..+-.+......-......+++++-++-++ .|..+|..+++-..
T Consensus 403 ~-~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~-----~Ik~WD~~~~~~~~ 447 (537)
T KOG0274|consen 403 R-KCIHTLQGHTSLVSSLLLRDNFLVSSSADG-----TIKLWDAEEGECLR 447 (537)
T ss_pred h-hhhhhhcCCcccccccccccceeEeccccc-----cEEEeecccCceee
Confidence 3 112222222222233344566777766553 67777777665444
No 258
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=22.78 E-value=7e+02 Score=24.12 Aligned_cols=150 Identities=21% Similarity=0.204 Sum_probs=84.5
Q ss_pred CCcEEEEeccccCCCCCceeEEEeCCCCCeeeccCCCCCCCceeEEE--ECCEEEEEecCCCCCCCCeEEEEeCCCCcee
Q psy11333 286 RGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAV--LNDLLYAVGGHDGQSYLNSIERYDPQTNQWS 363 (482)
Q Consensus 286 ~~~~l~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 363 (482)
.++++|+..+. .+.+..+|..+++-... .+.++..+.+++ .++++|+...-. ..+++.+.|..+++=.
T Consensus 84 ~~~~vyv~~~~-----~~~v~vid~~~~~~~~~--~~vG~~P~~~~~~~~~~~vYV~n~~~---~~~~vsvid~~t~~~~ 153 (381)
T COG3391 84 AGNKVYVTTGD-----SNTVSVIDTATNTVLGS--IPVGLGPVGLAVDPDGKYVYVANAGN---GNNTVSVIDAATNKVT 153 (381)
T ss_pred CCCeEEEecCC-----CCeEEEEcCcccceeeE--eeeccCCceEEECCCCCEEEEEeccc---CCceEEEEeCCCCeEE
Confidence 46789998763 46788899666654332 222223344444 467999986532 3468999999988744
Q ss_pred ecCCCCC-CcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCceee---cCCCCCCccceEEEE-E-CCEEEEEcC
Q psy11333 364 CDVAPTT-SCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSR---VAPMTTRRLGVAVAV-L-GGFLYAIGG 437 (482)
Q Consensus 364 ~~~~~~~-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~~~~r~~~~~~~-~-~~~i~v~GG 437 (482)
.. .+.. .| ...+....++++|+.-. ..+.+..+|+.+..=.. ....+....-+...+ . +.++|+.-.
T Consensus 154 ~~-~~vG~~P-~~~a~~p~g~~vyv~~~-----~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 154 AT-IPVGNTP-TGVAVDPDGNKVYVTNS-----DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred EE-EecCCCc-ceEEECCCCCeEEEEec-----CCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEec
Confidence 33 2211 22 22333344677998862 23578888887664332 111333333222222 2 446888876
Q ss_pred CCCCCCCCeEEEEeCCCC
Q psy11333 438 SDGQSPLNTVERFDPKLN 455 (482)
Q Consensus 438 ~~~~~~~~~~~~y~~~~~ 455 (482)
.+. ...+.+.|..++
T Consensus 227 ~~~---~~~v~~id~~~~ 241 (381)
T COG3391 227 GSG---SNNVLKIDTATG 241 (381)
T ss_pred cCC---CceEEEEeCCCc
Confidence 543 235666666654
No 259
>KOG1517|consensus
Probab=22.62 E-value=1.1e+03 Score=26.42 Aligned_cols=77 Identities=23% Similarity=0.363 Sum_probs=42.7
Q ss_pred eeeccC-CCCCCCceeEEE----ECCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccceeE----EEECCEE
Q psy11333 315 WKIVAP-MSKRRCGVGVAV----LNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGV----AVLDGFL 385 (482)
Q Consensus 315 W~~~~~-~~~~~~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~~~~----~~~~~~l 385 (482)
|..+.. ++.+|... +++ ..|++|+-|+ ...+-+||....+-. ..+|..-..... -..+|.+
T Consensus 1154 w~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd------~r~IRIWDa~~E~~~---~diP~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1154 WSSLSDQLPGARGTG-LVVDWQQQSGHLLVTGD------VRSIRIWDAHKEQVV---ADIPYGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred eccccccCccCCCCC-eeeehhhhCCeEEecCC------eeEEEEEecccceeE---eecccCCCccceeecccccCCce
Confidence 544544 44555443 444 2789999887 357889998866532 344443221111 1234678
Q ss_pred EEEeccCCCcccCeEEEEeCC
Q psy11333 386 YAVGGQDGVQCLNHVERYDPK 406 (482)
Q Consensus 386 yv~GG~~~~~~~~~~~~yd~~ 406 (482)
++.|=-+| .+-.||-.
T Consensus 1224 i~AGfaDG-----svRvyD~R 1239 (1387)
T KOG1517|consen 1224 IAAGFADG-----SVRVYDRR 1239 (1387)
T ss_pred EEEeecCC-----ceEEeecc
Confidence 87774433 35567654
No 260
>KOG0285|consensus
Probab=21.33 E-value=7.3e+02 Score=23.75 Aligned_cols=65 Identities=28% Similarity=0.338 Sum_probs=38.5
Q ss_pred CCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCC-CcccceeEEEECCEEEEEeccCCCcccCeEEEEeCCCCce
Q psy11333 334 NDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTT-SCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKW 410 (482)
Q Consensus 334 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W 410 (482)
+|.-++-|+.+ .++-+||..+++-+.- ++ .--..-++++....-|++.+..+ ..+-|||++.++-
T Consensus 162 ~n~wf~tgs~D-----rtikIwDlatg~Lklt---ltGhi~~vr~vavS~rHpYlFs~ged----k~VKCwDLe~nkv 227 (460)
T KOG0285|consen 162 GNEWFATGSAD-----RTIKIWDLATGQLKLT---LTGHIETVRGVAVSKRHPYLFSAGED----KQVKCWDLEYNKV 227 (460)
T ss_pred CceeEEecCCC-----ceeEEEEcccCeEEEe---ecchhheeeeeeecccCceEEEecCC----CeeEEEechhhhh
Confidence 44555555543 4688999999985522 22 11122345566666777754332 3578898887763
No 261
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=21.05 E-value=4.8e+02 Score=21.51 Aligned_cols=127 Identities=12% Similarity=0.129 Sum_probs=66.3
Q ss_pred EEECCEEEEEecCCCCCCCCeEEEEeCCCCce-eecCCCCCCccc----ceeEEE-ECCEEEEEeccCCCcccCeEEEEe
Q psy11333 331 AVLNDLLYAVGGHDGQSYLNSIERYDPQTNQW-SCDVAPTTSCRT----SVGVAV-LDGFLYAVGGQDGVQCLNHVERYD 404 (482)
Q Consensus 331 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~~r~----~~~~~~-~~~~lyv~GG~~~~~~~~~~~~yd 404 (482)
+.++|.+|-++.........-+.+||..+.+. +.+ ++|.... ...+.+ .+++|-++--... ...-.+|.-+
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~--~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~-~~~~~IWvm~ 78 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSL--PLPFCNDDDDDSVSLSVVRGDCLCVLYQCDE-TSKIEIWVMK 78 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEE--CCCCccCccCCEEEEEEecCCEEEEEEeccC-CccEEEEEEe
Confidence 45799999888654433222689999999999 555 3332222 334433 3678887743211 1123555543
Q ss_pred ---CCCCceeecCCC-----CCCcc---ceEEEEE-CCEEEEEcCCCCCCC-CCeEEEEeCCCCceeecC
Q psy11333 405 ---PKENKWSRVAPM-----TTRRL---GVAVAVL-GGFLYAIGGSDGQSP-LNTVERFDPKLNRWTAMA 461 (482)
Q Consensus 405 ---~~~~~W~~~~~~-----~~~r~---~~~~~~~-~~~i~v~GG~~~~~~-~~~~~~y~~~~~~W~~~~ 461 (482)
.....|+++-.. +.... ......- ++++.+.-....... .+.+++++ +++.-..+.
T Consensus 79 ~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~ 147 (164)
T PF07734_consen 79 KYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVD 147 (164)
T ss_pred eeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcc
Confidence 346789886422 11111 1112222 345666544332221 25677886 555554443
No 262
>KOG0263|consensus
Probab=20.61 E-value=8.9e+02 Score=25.59 Aligned_cols=60 Identities=23% Similarity=0.269 Sum_probs=33.7
Q ss_pred CCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcccc-eeE-EEECCEEEEEeccCCCcccCeEEEEeCC
Q psy11333 334 NDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTS-VGV-AVLDGFLYAVGGQDGVQCLNHVERYDPK 406 (482)
Q Consensus 334 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~~-~~~-~~~~~~lyv~GG~~~~~~~~~~~~yd~~ 406 (482)
+|+-.+.|+.+ ..+..||..+.+= + ..+...... .++ ...+|.+++.||.+ +++-.||..
T Consensus 588 ~Gr~LaSg~ed-----~~I~iWDl~~~~~--v-~~l~~Ht~ti~SlsFS~dg~vLasgg~D-----nsV~lWD~~ 649 (707)
T KOG0263|consen 588 CGRYLASGDED-----GLIKIWDLANGSL--V-KQLKGHTGTIYSLSFSRDGNVLASGGAD-----NSVRLWDLT 649 (707)
T ss_pred CCceEeecccC-----CcEEEEEcCCCcc--h-hhhhcccCceeEEEEecCCCEEEecCCC-----CeEEEEEch
Confidence 55544555544 3588999887642 1 112211111 122 24589999999864 456677765
No 263
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.55 E-value=7.1e+02 Score=23.31 Aligned_cols=110 Identities=21% Similarity=0.194 Sum_probs=63.6
Q ss_pred CCCCCceeEEEE--CCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCcc--cceeEEEECC-EEEEEeccCCCcc
Q psy11333 322 SKRRCGVGVAVL--NDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCR--TSVGVAVLDG-FLYAVGGQDGVQC 396 (482)
Q Consensus 322 ~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r--~~~~~~~~~~-~lyv~GG~~~~~~ 396 (482)
|.|-.+|+++.. ...+.+++-..+ .-..++|+.+.+=... -..+..| ++|++..-+| .||+.-+... ..
T Consensus 2 ~lP~RgH~~a~~p~~~~avafaRRPG----~~~~v~D~~~g~~~~~-~~a~~gRHFyGHg~fs~dG~~LytTEnd~~-~g 75 (305)
T PF07433_consen 2 PLPARGHGVAAHPTRPEAVAFARRPG----TFALVFDCRTGQLLQR-LWAPPGRHFYGHGVFSPDGRLLYTTENDYE-TG 75 (305)
T ss_pred CCCccccceeeCCCCCeEEEEEeCCC----cEEEEEEcCCCceeeE-EcCCCCCEEecCEEEcCCCCEEEEeccccC-CC
Confidence 456667887775 467777775433 3478999998875433 2334455 4566666554 5666654221 11
Q ss_pred cCeEEEEeCCCCceeecCCCC-CCccceEEEEE-CC-EEEE-EcCC
Q psy11333 397 LNHVERYDPKENKWSRVAPMT-TRRLGVAVAVL-GG-FLYA-IGGS 438 (482)
Q Consensus 397 ~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~-~~-~i~v-~GG~ 438 (482)
.-.+-+||.. +....+...+ .+..-|-+... +| .|.| -||.
T Consensus 76 ~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI 120 (305)
T PF07433_consen 76 RGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGI 120 (305)
T ss_pred cEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCC
Confidence 2357789987 6677776655 33444555555 44 3333 3553
No 264
>KOG1517|consensus
Probab=20.22 E-value=1.3e+03 Score=26.07 Aligned_cols=101 Identities=23% Similarity=0.351 Sum_probs=59.0
Q ss_pred CCEEEEEecCCCCCCCCeEEEEeCCCCc---------eeecCCCCCCcccceeEEEE---CCEEEEEeccCCCcccCeEE
Q psy11333 334 NDLLYAVGGHDGQSYLNSIERYDPQTNQ---------WSCDVAPTTSCRTSVGVAVL---DGFLYAVGGQDGVQCLNHVE 401 (482)
Q Consensus 334 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~---------W~~~~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~ 401 (482)
+..+.+.|..++ .+-+|+.-.+. |..+..-++.+|....++.+ .|.+|+.|+. ..+-
T Consensus 1122 D~aLlLtas~dG-----vIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~------r~IR 1190 (1387)
T KOG1517|consen 1122 DDALLLTASSDG-----VIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV------RSIR 1190 (1387)
T ss_pred chhheeeeccCc-----eEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCe------eEEE
Confidence 445666666554 45566655444 55564456677765544443 5889998873 5678
Q ss_pred EEeCCCCceeecCCCCCCccceEEE----EECCEEEEEcCCCCCCCCCeEEEEeC
Q psy11333 402 RYDPKENKWSRVAPMTTRRLGVAVA----VLGGFLYAIGGSDGQSPLNTVERFDP 452 (482)
Q Consensus 402 ~yd~~~~~W~~~~~~~~~r~~~~~~----~~~~~i~v~GG~~~~~~~~~~~~y~~ 452 (482)
.||..+.+ .+.++|..-....-+ ..+|.+++.|--+| .+..||.
T Consensus 1191 IWDa~~E~--~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDG-----svRvyD~ 1238 (1387)
T KOG1517|consen 1191 IWDAHKEQ--VVADIPYGSSTLVTALSADLVHGNIIAAGFADG-----SVRVYDR 1238 (1387)
T ss_pred EEecccce--eEeecccCCCccceeecccccCCceEEEeecCC-----ceEEeec
Confidence 88876554 455666553222111 22567777765444 4666764
No 265
>KOG1538|consensus
Probab=20.19 E-value=9e+02 Score=25.36 Aligned_cols=97 Identities=21% Similarity=0.298 Sum_probs=51.6
Q ss_pred CCEEEEEecCCCCCCCCeEEEEeCCCCceeecCCCCCCccc-ceeEE-EECCEEEEEeccCCC--------------ccc
Q psy11333 334 NDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRT-SVGVA-VLDGFLYAVGGQDGV--------------QCL 397 (482)
Q Consensus 334 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~r~-~~~~~-~~~~~lyv~GG~~~~--------------~~~ 397 (482)
+..+.+..| +.+..||+..+.- + .++.-... -.+++ +.+|+.++.||.+.. +..
T Consensus 24 GsqL~lAAg-------~rlliyD~ndG~l--l-qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~ 93 (1081)
T KOG1538|consen 24 GTQLILAAG-------SRLLVYDTSDGTL--L-QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHN 93 (1081)
T ss_pred CceEEEecC-------CEEEEEeCCCccc--c-cccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccC
Confidence 335666555 5789999987752 3 33332222 22333 458999999985321 112
Q ss_pred CeE--EEEeCCCCc-----------eeecC-----CCCCCccceEEEEECCEEEEEcCCCC
Q psy11333 398 NHV--ERYDPKENK-----------WSRVA-----PMTTRRLGVAVAVLGGFLYAIGGSDG 440 (482)
Q Consensus 398 ~~~--~~yd~~~~~-----------W~~~~-----~~~~~r~~~~~~~~~~~i~v~GG~~~ 440 (482)
+.+ ..|+|.+.. |+.-. .-...|...++-..+|.++++|=.+|
T Consensus 94 D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nG 154 (1081)
T KOG1538|consen 94 DAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNG 154 (1081)
T ss_pred CeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCc
Confidence 222 335554332 33211 11234555555556889999987655
Done!