RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11333
(482 letters)
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional.
Length = 534
Score = 236 bits (603), Expect = 1e-71
Identities = 108/474 (22%), Positives = 209/474 (44%), Gaps = 51/474 (10%)
Query: 35 RELCD--VVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDVAMDNL 92
++ CD +++ G I H+++LS+ S YF+ MF E+ E+ + +ID + + +
Sbjct: 7 QKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFKEN---EINL-NIDYDSFNEV 62
Query: 93 IEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLDPSNCLGIRAFADTHSC 152
I++ YT I + +NV+ +L A L + + ++C ++ + +D +NC+ I F+ + C
Sbjct: 63 IKYIYTGKINITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGC 122
Query: 153 RDLLRIADKFTQHNFQEVMESEEFLILPVAQLVDIISSDELNVRSEEQVFNAIMSWLKYN 212
+ L A + ++N + + +F+ L +L+ I+S D+LNV SE+ V I+ WL
Sbjct: 123 KKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSK 182
Query: 213 VSERRQHLAQVLQHVRLPLLSP-------KFLVGTVGSDLLVRSDEACR----------D 255
+ + + + +L+ +R+ LS ++ + ++
Sbjct: 183 KNNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKYNLNKI 242
Query: 256 LVDEAK----NYLLLPQERPLMQGPRTRPRKPSR-----------------RGEVLFAVG 294
L + Y+ + T S V++ +G
Sbjct: 243 LPRSSTFGSIIYIHITMSIFTYN-YITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIG 301
Query: 295 GWC-SGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIE 353
G + +++SV YD ++ W V + R GV V N+ +Y +GG LN++E
Sbjct: 302 GMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVE 361
Query: 354 RYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGG-QDGVQCLNHVERYDPKENKWSR 412
+ P ++W + P R + V ++ +Y +GG + L VE + NKWS+
Sbjct: 362 SWKPGESKWR-EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420
Query: 413 VAPMTTRRLGVAVAVLGGFLYAIGG---SDGQSPLNTVERFDPKLNRWTAMAPM 463
+P+ G G +Y IGG D N VE ++P N+WT ++ +
Sbjct: 421 GSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSL 474
Score = 126 bits (318), Expect = 3e-31
Identities = 47/173 (27%), Positives = 86/173 (49%), Gaps = 5/173 (2%)
Query: 290 LFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGG-HDGQSY 348
++ +GG + ++++VE + P S W+ P+ R V +N+L+Y +GG
Sbjct: 345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDEL 404
Query: 349 LNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGG---QDGVQCLNHVERYDP 405
L ++E + TN+WS +P DG +Y +GG D ++ N VE Y+P
Sbjct: 405 LKTVECFSLNTNKWS-KGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNP 463
Query: 406 KENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWT 458
NKW+ ++ + R+ ++ + +Y +GG + +N +E +D K N WT
Sbjct: 464 VTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516
Score = 56.3 bits (136), Expect = 2e-08
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 286 RGEVLFAVGGWCSGDAI---SSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGG 342
++ +GG D I + VE Y+P ++ W ++ ++ R + + N+ +Y VGG
Sbjct: 436 HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGG 495
Query: 343 HDGQSYLNSIERYDPQTNQWSCDVAPTTS 371
+ Y+N IE YD +TN W+
Sbjct: 496 DKYEYYINEIEVYDDKTNTWTLFCKFPKV 524
>gnl|CDD|149006 pfam07707, BACK, BTB And C-terminal Kelch. This domain is found
associated with pfam00651 and pfam01344. The BACK domain
is found juxtaposed to the BTB domain; they are
separated by as little as two residues. This family
appears to be closely related to the BTB domain (Finn
RD, personal observation).
Length = 101
Score = 156 bits (397), Expect = 2e-46
Identities = 53/99 (53%), Positives = 75/99 (75%)
Query: 140 CLGIRAFADTHSCRDLLRIADKFTQHNFQEVMESEEFLILPVAQLVDIISSDELNVRSEE 199
CLGI FADT+ C +L +A +F NF EV +SEEFL L QL++++SSDELNV SEE
Sbjct: 1 CLGIYRFADTYGCEELAEVALRFILKNFLEVSKSEEFLELSKEQLLELLSSDELNVPSEE 60
Query: 200 QVFNAIMSWLKYNVSERRQHLAQVLQHVRLPLLSPKFLV 238
+VF A++ W+K++V R++HL ++L VRLPLLSP++L+
Sbjct: 61 EVFEAVIKWVKHDVENRKKHLPELLSAVRLPLLSPEYLL 99
>gnl|CDD|197943 smart00875, BACK, BTB And C-terminal Kelch. The BACK domain is
found juxtaposed to the BTB domain; they are separated
by as little as two residues.
Length = 101
Score = 134 bits (339), Expect = 3e-38
Identities = 54/99 (54%), Positives = 75/99 (75%)
Query: 140 CLGIRAFADTHSCRDLLRIADKFTQHNFQEVMESEEFLILPVAQLVDIISSDELNVRSEE 199
CLGIR FAD H +L A +F NF EV SEEFL LP+ QL++++SSD+LNV SEE
Sbjct: 1 CLGIRRFADAHGLEELAEKALRFILQNFSEVSSSEEFLELPLEQLLELLSSDDLNVSSEE 60
Query: 200 QVFNAIMSWLKYNVSERRQHLAQVLQHVRLPLLSPKFLV 238
+VF A++ W+K++ +RR+HL ++L+HVRLPLLSP +L+
Sbjct: 61 EVFEAVLRWVKHDPEKRREHLPELLEHVRLPLLSPDYLL 99
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain. The BTB (for BR-C, ttk and bab) or
POZ (for Pox virus and Zinc finger) domain is present
near the N-terminus of a fraction of zinc finger
(pfam00096) proteins and in proteins that contain the
pfam01344 motif such as Kelch and a family of pox virus
proteins. The BTB/POZ domain mediates homomeric
dimerisation and in some instances heteromeric
dimerisation. The structure of the dimerised PLZF
BTB/POZ domain has been solved and consists of a tightly
intertwined homodimer. The central scaffolding of the
protein is made up of a cluster of alpha-helices flanked
by short beta-sheets at both the top and bottom of the
molecule. POZ domains from several zinc finger proteins
have been shown to mediate transcriptional repression
and to interact with components of histone deacetylase
co-repressor complexes including N-CoR and SMRT. The POZ
or BTB domain is also known as BR-C/Ttk or ZiN.
Length = 101
Score = 119 bits (301), Expect = 9e-33
Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Query: 30 ALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDVAM 89
LR + ELCDV L VG ++ AH+ VL+ACSPYF+A+FTG E+T+ D+
Sbjct: 3 ELRENGELCDVTLVVGDKEFHAHKAVLAACSPYFKALFTGNKEV----EITLEDVSPEDF 58
Query: 90 DNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLK 132
+ L+EF YT + + E NV LL A LQ+ + D C EFL
Sbjct: 59 EALLEFIYTGKLEITEENVDDLLALADKLQIPALIDKCEEFLI 101
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac. Domain
in Broad-Complex, Tramtrack and Bric a brac. Also known
as POZ (poxvirus and zinc finger) domain. Known to be a
protein-protein interaction motif found at the N-termini
of several C2H2-type transcription factors as well as
Shaw-type potassium channels. Known structure reveals a
tightly intertwined dimer formed via interactions
between N-terminal strand and helix structures. However
in a subset of BTB/POZ domains, these two secondary
structures appear to be missing. Be aware SMART predicts
BTB/POZ domains without the beta1- and alpha1-secondary
structures.
Length = 97
Score = 109 bits (274), Expect = 5e-29
Identities = 38/97 (39%), Positives = 59/97 (60%)
Query: 39 DVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDVAMDNLIEFCYT 98
DV L VG +K AH+ VL+A SPYF+A+F+ + ES ++E+ + D+ L+ F YT
Sbjct: 1 DVTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLDDVSPEDFRALLNFLYT 60
Query: 99 SHITVEESNVQTLLPAACLLQLVEIQDICCEFLKRQL 135
+ + E NV+ LL A LQ+ + ++C EFL + L
Sbjct: 61 GKLDLPEENVEELLELADYLQIPGLVELCEEFLLKLL 97
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional.
Length = 557
Score = 100 bits (251), Expect = 1e-22
Identities = 109/457 (23%), Positives = 199/457 (43%), Gaps = 76/457 (16%)
Query: 18 DKHPRVVLSEVSALRRHRELCDVVLNVG-ARKIFAHRVVLSACSPYFRAMFTGEL-AESR 75
KH R V+S +S L LCDV++ +G +I AH+ +L+A S YFR +FT +
Sbjct: 6 IKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDL 65
Query: 76 QAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLKRQL 135
V ++ D A+ N++++ Y HI+ NV +L A L + ++ C ++K
Sbjct: 66 VTRVNLQMFDKDAVKNIVQYLYNRHIS--SMNVIDVLKCADYLLIDDLVTDCESYIKDYT 123
Query: 136 DPSNCLGI--RAFADTHSCRDLLRIADKFTQHNFQEVMESEEFLILPVAQLVDIISS-DE 192
+ C+ + R + +H +++ + N ++ ++ F L DIIS+ D
Sbjct: 124 NHDTCIYMYHRLYEMSHI--PIVKYIKRMLMSNIPTLITTDAFKKTVFEILFDIISTNDN 181
Query: 193 LNVRSEEQVFNAIMSWLKYNVSERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVRSDE- 251
+ + E ++ WL+YN Q L +L + + L K S LL+ S++
Sbjct: 182 VYLYREGYKVTILLKWLEYNYITEEQLLC-ILSCIDIQNLDKK-------SRLLLYSNKT 233
Query: 252 -----AC-RDLVDEAKNYLLLPQERPL--------MQGP---------------RTRPR- 281
+C + L+D +N ++P++ L + P T P
Sbjct: 234 INMYPSCIQFLLDNKQNRNIIPRQLCLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNH 293
Query: 282 -----KPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDL 336
E++ A G + +++ V + + ++ + PM K RC +AV++D
Sbjct: 294 IINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDT 353
Query: 337 LYAVGGHDGQSYLNSIERYDPQTNQWSC--DVAPTTSCRTSVGVAVLDGFLYAVGGQD-- 392
+YA+GG +G + +IE Y ++W D+ S S G+ VLD ++Y +GG+
Sbjct: 354 IYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS---SYGMCVLDQYIYIIGGRTEH 410
Query: 393 ----GVQCLNHVE------------RYDPKENKWSRV 413
V +N ++ RYD N W +
Sbjct: 411 IDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL 447
Score = 35.8 bits (82), Expect = 0.054
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 379 AVLDGFLYAVGGQD-GVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGG 437
A++D + GG + LN V + + + + PM R ++AV+ +YAIGG
Sbjct: 300 AIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGG 359
Query: 438 SDGQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVF 475
+G + T+E + ++W + M G V
Sbjct: 360 QNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL 397
>gnl|CDD|165153 PHA02790, PHA02790, Kelch-like protein; Provisional.
Length = 480
Score = 80.5 bits (198), Expect = 4e-16
Identities = 86/408 (21%), Positives = 168/408 (41%), Gaps = 47/408 (11%)
Query: 23 VVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTI- 81
V + AL ++ ++ +G I + +L SPYFR + +++ +
Sbjct: 8 VYCKNILALSMTKKFKTIIEAIGG-NIIVNSTILKKLSPYFRTHLRQKYTKNKDPVTRVC 66
Query: 82 RDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLDPSNCL 141
D+D ++ +++ + YT + ++ NV LL A+ L + I C F+ R C+
Sbjct: 67 LDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCV 126
Query: 142 GIRAFADTHSCRDLLRIADKFTQHNFQE----VMESEEFLILPVAQLVDIISSDELNVRS 197
+ +LL F +F E ++++ ++L + + I+ SDELNV
Sbjct: 127 ECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSMKL-----ILESDELNVPD 181
Query: 198 EEQVFNAIMSWLKYNVSERRQHLAQVL----QHVRLPLLSPKFLVGT---VGSDLLVRSD 250
E+ V + ++ W +RR L +L +R LSP+ + + + D
Sbjct: 182 EDYVVDFVIKWYM----KRRNRLGNLLLLIKNVIRSNYLSPRGINNVKWILDCTKIFHCD 237
Query: 251 EACRDLVDEAKNYLLLPQERPLMQGPRTRPR--------KPSRRGEVLFAVGGWCSGDAI 302
+ R K+Y + P ++ P + + GEV++ +GGW + +
Sbjct: 238 KQPR------KSY-----KYPFIEYPMNMDQIIDIFHMCTSTHVGEVVYLIGGWMNNEIH 286
Query: 303 SSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQW 362
++ + S++W + PM+ R N+ LY VGG + S+ER+ W
Sbjct: 287 NNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPT---SVERWFHGDAAW 343
Query: 363 SCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKW 410
++ R + VA ++ +Y +GG E P ++W
Sbjct: 344 -VNMPSLLKPRCNPAVASINNVIYVIGGHSETD--TTTEYLLPNHDQW 388
Score = 30.4 bits (68), Expect = 2.6
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Query: 265 LLPQERPLMQGPRTR-PRKPSRR---GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAP 320
LLP GP T P S G LF VG + E Y S+ W ++
Sbjct: 381 LLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--------RNAEFYCESSNTWTLIDD 432
Query: 321 MSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWS 363
R + ++++ L +GG SY+++IE Y+ +T W+
Sbjct: 433 PIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWN 475
Score = 30.0 bits (67), Expect = 2.9
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 385 LYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPL 444
+Y +GG + N+ + N W + PM + RL + LY +GG +
Sbjct: 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPT-- 331
Query: 445 NTVERFDPKLNRWTAMAPMSTRR 467
+VER+ W M + R
Sbjct: 332 -SVERWFHGDAAWVNMPSLLKPR 353
>gnl|CDD|128874 smart00612, Kelch, Kelch domain.
Length = 47
Score = 70.3 bits (173), Expect = 1e-15
Identities = 24/46 (52%), Positives = 29/46 (63%)
Query: 385 LYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGG 430
+Y VGG DG Q L VE YDP+ NKW+ + M T R G VAV+ G
Sbjct: 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
Score = 65.3 bits (160), Expect = 8e-14
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 432 LYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVF 475
+Y +GG DG L +VE +DP+ N+WT + M T R G AV
Sbjct: 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVI 45
Score = 64.5 bits (158), Expect = 2e-13
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 336 LLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDG 383
+Y VGG DG L S+E YDP+TN+W+ + + R+ GVAV++G
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNKWT-PLPSMPTPRSGHGVAVING 47
Score = 62.2 bits (152), Expect = 1e-12
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 289 VLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLND 335
++ VGG+ G + SVE YDP+++ W + M R G GVAV+N
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that the
Drosophila ring canal kelch protein is related to
Galactose Oxidase, for which a structure has been
solved. The kelch motif forms a beta sheet. Several of
these sheets associate to form a beta propeller
structure as found in pfam00064, pfam00400 and
pfam00415.
Length = 46
Score = 68.1 bits (167), Expect = 8e-15
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 373 RTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMT 417
R+ GV VL G +Y +GG DG Q L+ VE YDP+ N WS++ M
Sbjct: 2 RSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
Score = 66.9 bits (164), Expect = 2e-14
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 324 RRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWS 363
R G GV VL +Y +GG+DG L+S+E YDP+TN WS
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWS 40
Score = 65.8 bits (161), Expect = 5e-14
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 419 RRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMS 464
R G V VLGG +Y IGG DG L++VE +DP+ N W+ + M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
Score = 48.8 bits (117), Expect = 5e-08
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMS 322
G ++ +GG+ G ++SSVE YDP+++ W + M
Sbjct: 11 GGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif.
Length = 50
Score = 49.8 bits (119), Expect = 3e-08
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 420 RLGVAVAVLGGFLYAIGG-SDGQSPLNTVERFDPKLNRWTAMAPMSTRR 467
R G + +GG +Y GG S+G N V +DP+ W + P+ T R
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
Score = 47.4 bits (113), Expect = 2e-07
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 372 CRTSVGVAVLDGFLYAVGGQ-DGVQCLNHVERYDPKENKWSRVAPMTTRR 420
RT + G +Y GG +G + N V YDP+ W ++ P+ T R
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
Score = 40.5 bits (95), Expect = 4e-05
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 325 RCGVGVAVLNDLLYAVGG-HDGQSYLNSIERYDPQTNQWS 363
R G + +Y GG +G N + YDP+T W
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWE 41
Score = 31.6 bits (72), Expect = 0.071
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 287 GEVLFAVGGWCSGDAISS-VERYDPQSSDWKIVAPMSKRR 325
G ++ GG+ +G S+ V YDP++ W+ + P+ R
Sbjct: 11 GGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain.
Length = 48
Score = 46.5 bits (111), Expect = 3e-07
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 382 DGFLYAVGGQDGVQ-CLNHVERYDPKENKWSRVAPMTTRRLGVAVAVL 428
G +Y GG LN + YD N W ++ + R G A V+
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
Score = 38.4 bits (90), Expect = 2e-04
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 429 GGFLYAIGGSDG-QSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVF 475
GG +Y GG + LN + +D N W + + R V
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
Score = 37.7 bits (88), Expect = 5e-04
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 334 NDLLYAVGGHDG-QSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVL 381
+Y GG + LN + YD TN W + R V+
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWE-KLGDLPGPRAGHAATVI 48
Score = 31.9 bits (73), Expect = 0.049
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 287 GEVLFAVGGWC-SGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVL 333
G ++ GG G ++ + YD ++ W+ + + R G V+
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
>gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase;
Provisional.
Length = 376
Score = 48.9 bits (117), Expect = 4e-06
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Query: 327 GVGVAVLNDLLYAVG-GHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFL 385
G G A+ N+ +Y VG G G S+ ++ P W+ A R A +DG L
Sbjct: 32 GTG-AIDNNTVY-VGLGSAGTSWY-KLDLNAPS-KGWTKIAAFPGGPREQAVAAFIDGKL 87
Query: 386 YAVGG-----QDG-VQCLNHVERYDPKENKWSRVAPMTTRRL--GVAVAVLGGFLYAIGG 437
Y GG +G Q + V +YDPK N W ++ + L VAV++ G Y GG
Sbjct: 88 YVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGG 147
Query: 438 S 438
Sbjct: 148 V 148
Score = 47.7 bits (114), Expect = 8e-06
Identities = 39/173 (22%), Positives = 54/173 (31%), Gaps = 49/173 (28%)
Query: 311 QSSDWKIVA--PMSKRRCGVGVAVLNDLLYAVGG-----HDGQ-SYLNSIERYDPQTNQW 362
S W +A P R V + + LY GG +G + + +YDP+TN W
Sbjct: 60 PSKGWTKIAAFPGGPREQAVAAFI-DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSW 118
Query: 363 SCDVAPTTSCRT---SVGVAVLDGFLYAVGG----------QDGVQC------------- 396
T S V V++ +G Y GG +D
Sbjct: 119 Q--KLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDA 176
Query: 397 -----------LNHVERYDPKENKWSRVAPMT-TRRLGVAVAVLGGFLYAIGG 437
V YDP N+W G AV + G L+ I G
Sbjct: 177 YFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLING 229
Score = 46.5 bits (111), Expect = 2e-05
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 406 KENKWSRVA--PMTTRRLGVAVAVLGGFLYAIGGSDGQSP-------LNTVERFDPKLNR 456
W+++A P R VA + G LY GG G++ + V ++DPK N
Sbjct: 60 PSKGWTKIAAFPGGPREQAVAAFI-DGKLYVFGGI-GKTNSEGSPQVFDDVYKYDPKTNS 117
Query: 457 WTAM---APMSTRRKHLGCAVFVGDNG 480
W + +P+ G NG
Sbjct: 118 WQKLDTRSPVGL----AGHVAVSLHNG 140
>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain.
Length = 49
Score = 43.4 bits (103), Expect = 4e-06
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 378 VAVLDGFLYAVGGQDG-VQCLNHVERYDPKENKWSRVAPMTT 418
++ DG LY GG++ L+ V +D N W+R+ + +
Sbjct: 8 TSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSLPS 49
Score = 41.5 bits (98), Expect = 2e-05
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 419 RRLGVAVAVLGGFLYAIGGSDGQ-SPLNTVERFDPKLNRWTAMAPM 463
R + ++ G LY GG + S L+ V FD N WT + +
Sbjct: 2 RAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSL 47
Score = 38.4 bits (90), Expect = 2e-04
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 324 RRCGVGVAVLNDLLYAVGGHDGQ-SYLNSIERYDPQTNQWS 363
R ++ + LY GG + S L+ + +D TN W+
Sbjct: 2 RAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWT 42
Score = 27.6 bits (62), Expect = 1.7
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 290 LFAVGGWCS-GDAISSVERYDPQSSDWKIVAPM 321
L+ GG G +S V +D ++ W + +
Sbjct: 15 LYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSL 47
>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein.
Length = 341
Score = 47.3 bits (112), Expect = 9e-06
Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 29/178 (16%)
Query: 308 YDPQSSDWKIVAP---MSKRRC-GVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWS 363
+D + W I + + C GV + + LY GG D + + YD N+W+
Sbjct: 55 FDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWT 114
Query: 364 ----CDVAPTTSCRTSVGVAVLDGFLYAVGG--QDGVQC----LNHVERYDPKENKWSRV 413
D RT +A + +Y GG + G+ +E Y+ + KW ++
Sbjct: 115 FLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQL 174
Query: 414 ---APMTTRRLGVAVAVLGGFLYAI----------GGSDGQSPLNTVERFDPKLNRWT 458
+R G AV+ G ++ + G SD +S N V+ FDP +WT
Sbjct: 175 PDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYES--NAVQFFDPASGKWT 230
Score = 44.6 bits (105), Expect = 7e-05
Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 22/142 (15%)
Query: 325 RCGVGVAVLNDLLYAVGGH-------DGQSYLNSIERYDPQTNQWSCDVA----PTTSCR 373
RC G+AV+ D LY+ GG D Y+ +D T+ WS A P SC
Sbjct: 23 RCSHGIAVVGDKLYSFGGELKPNEHIDKDLYV-----FDFNTHTWSIAPANGDVPRISCL 77
Query: 374 TSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTR-----RLGVAVAVL 428
VAV LY GG+D + + YD +N+W+ + + R ++A
Sbjct: 78 GVRMVAVGTK-LYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD 136
Query: 429 GGFLYAIGGSDGQSPLNTVERF 450
+Y GG + T ERF
Sbjct: 137 ENHVYVFGGVSKGGLMKTPERF 158
Score = 37.7 bits (87), Expect = 0.012
Identities = 40/176 (22%), Positives = 65/176 (36%), Gaps = 26/176 (14%)
Query: 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMS-----KRRCGVGVAVLNDLLYAVG 341
G L+ GG S YD ++W + + + R +A + +Y G
Sbjct: 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFG 144
Query: 342 GHDGQSYLNS------IERYDPQTNQWS--CDVAPTTSCRTSVGVAVLDGFLYAV----- 388
G + + IE Y+ +W D R G AV+ G ++ V
Sbjct: 145 GVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFAT 204
Query: 389 ----GGQDGVQCLNHVERYDPKENKWSRVAPMTTR---RLGVAVAVLGGFLYAIGG 437
GG+ + N V+ +DP KW+ V + R A AV+G ++ GG
Sbjct: 205 SILPGGKSDYES-NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGG 259
Score = 36.9 bits (85), Expect = 0.017
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 373 RTSVGVAVLDGFLYAVGGQDGVQCLNHVER----YDPKENKWSRVAPM-----TTRRLGV 423
R S G+AV+ LY+ GG+ ++ H+++ +D + WS +AP LGV
Sbjct: 23 RCSHGIAVVGDKLYSFGGE--LKPNEHIDKDLYVFDFNTHTWS-IAPANGDVPRISCLGV 79
Query: 424 AVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWT 458
+ +G LY GG D + + +D N WT
Sbjct: 80 RMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWT 114
>gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein.
Length = 470
Score = 45.7 bits (108), Expect = 4e-05
Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 16/171 (9%)
Query: 308 YDPQSSDWKIVAPMS----KRRC-GVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQW 362
+D ++ W I +P + C GV + + LY GG D N +D TN+W
Sbjct: 198 FDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEW 256
Query: 363 S----CDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKW---SRVAP 415
+ PT R+ +A + +Y GG L ++ Y+ + KW S
Sbjct: 257 KLLTPVEEGPTP--RSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGD 314
Query: 416 MTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTR 466
+ R G + V+ G ++ + G +G ++ V +DP ++WT + R
Sbjct: 315 SFSIRGGAGLEVVQGKVWVVYGFNG-CEVDDVHYYDPVQDKWTQVETFGVR 364
Score = 39.2 bits (91), Expect = 0.004
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 373 RTSVGVAVLDGFLYAVGGQ-DGVQCLN-HVERYDPKENKWSRVAPMT-----TRRLGVAV 425
R S G+A + +Y+ GG+ Q ++ H+ +D + WS ++P T LGV +
Sbjct: 166 RCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWS-ISPATGDVPHLSCLGVRM 224
Query: 426 AVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPM 463
+G LY GG D N FD N W + P+
Sbjct: 225 VSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPV 262
>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that Drosophila
ring canal kelch protein is related to Galactose Oxidase
for which a structure has been solved. The kelch motif
forms a beta sheet. Several of these sheets associate to
form a beta propeller structure as found in pfam00064,
pfam00400 and pfam00415.
Length = 48
Score = 39.7 bits (93), Expect = 9e-05
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 324 RRCGVGVAVLNDLLYAVGG--HDGQSYLNSIERYDPQTNQWSC 364
R V+ LY VGG G + + DP+TN W+
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTE 43
Score = 34.7 bits (80), Expect = 0.005
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 372 CRTSVGVAVLDGFLYAVGG--QDGVQCLNHVERYDPKENKWSRVAPM 416
R V+ G LY VGG G + + DP+ N W+ + +
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPAL 47
Score = 34.3 bits (79), Expect = 0.006
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 419 RRLGVAVAVLGGFLYAIGGSDGQSPL--NTVERFDPKLNRWTAMAPM 463
R A V+GG LY +GGS G L + + DP+ N WT + +
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPAL 47
Score = 28.1 bits (63), Expect = 0.99
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 287 GEVLFAVGGWCSG--DAISSVERYDPQSSDWKIVAPM 321
G L+ VGG + S + DP+++ W + +
Sbjct: 11 GGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPAL 47
>gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family. Members of
this protein family contain multiple copies of the
beta-propeller-forming Kelch repeat. All are full-length
homologs to YjhT of Escherichia coli, which has been
identified as a mutarotase for sialic acid. This protein
improves bacterial ability to obtain host sialic acid,
and thus serves as a virulence factor. Some bacteria
carry what appears to be a cyclically permuted homolog
of this protein.
Length = 346
Score = 41.9 bits (99), Expect = 5e-04
Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 21/126 (16%)
Query: 327 GVGVAVLNDLLYAVGGHDGQSY----LNSIERYDPQTNQWSCDVAPTTSCRTSVGVA-VL 381
G G A++ D +Y G G S+ L + W +A + VA +
Sbjct: 11 GTG-AIIGDKVYVGLGSAGTSWYKLDLKKPSK------GWQ-KIADFPGGPRNQAVAAAI 62
Query: 382 DGFLYAVGG--QDG----VQCLNHVERYDPKENKWSRVAPMTTRRL--GVAVAVLGGFLY 433
DG LY GG + Q + V RYDPK+N W ++ + L ++ G Y
Sbjct: 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAY 122
Query: 434 AIGGSD 439
GG +
Sbjct: 123 FTGGVN 128
Score = 41.2 bits (97), Expect = 8e-04
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 406 KENKWSRVAPMTT-RRLGVAVAVLGGFLYAIGG-----SDGQSP-LNTVERFDPKLNRWT 458
W ++A R A + G LY GG S+G + V R+DPK N W
Sbjct: 39 PSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ 98
Query: 459 AMA 461
+
Sbjct: 99 KLD 101
>gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 381
Score = 40.8 bits (96), Expect = 0.001
Identities = 29/116 (25%), Positives = 39/116 (33%), Gaps = 17/116 (14%)
Query: 377 GVAVLDG-FLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMT-TRRLGVAVAVLGGFLYA 434
G L G +Y G G +V W+++A R AV+GG LY
Sbjct: 40 GAGALIGDTVYVGLGSAGTA--FYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYV 97
Query: 435 IGGSDGQSP-----LNTVERFDPKLNRWTAM---APMSTRRKHLGCAVFVGDNGAQ 482
GG N R+DP N W + +P L A NG +
Sbjct: 98 FGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTG-----LVGASTFSLNGTK 148
Score = 38.1 bits (89), Expect = 0.009
Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 15/91 (16%)
Query: 311 QSSDWKIVA--PMSKRRCGVGVAVLNDLLYAVGGHDGQS------YLNSIERYDPQTNQW 362
W +A P R AV+ LY GG+ G+S N RYDP TN W
Sbjct: 68 PGKGWTKIADFPGGARN-QAVAAVIGGKLYVFGGY-GKSVSSSPQVFNDAYRYDPSTNSW 125
Query: 363 SCDVAPTTSCRTSVG--VAVLDGF-LYAVGG 390
T S VG L+G +Y GG
Sbjct: 126 H--KLDTRSPTGLVGASTFSLNGTKIYFFGG 154
Score = 37.7 bits (88), Expect = 0.012
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 379 AVLDGFLYAVGG-----QDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVL--GGF 431
AV+ G LY GG Q N RYDP N W ++ + L A G
Sbjct: 89 AVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTK 148
Query: 432 LYAIGGSD 439
+Y GG +
Sbjct: 149 IYFFGGVN 156
>gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family
protein. Members of this protein family show
essentially full-length homology, cyclically permuted,
to YjhT from Escherichia coli. YjhT was shown to act as
a mutarotase for sialic acid, and by this ability to be
able to act as a virulence factor. Members of the YjhT
family (TIGR03547) and this cyclically-permuted family
have multiple repeats of the beta-propeller-forming
Kelch repeat.
Length = 323
Score = 32.0 bits (73), Expect = 0.65
Identities = 30/151 (19%), Positives = 51/151 (33%), Gaps = 54/151 (35%)
Query: 290 LFAVGGWCSGDAISSVERYDPQSSDWKIVA--PMSKRRCGVGVAVLNDLLYAVGGHDGQS 347
L+ GG +G + ++ ++ +W+ + P + R V V + N+L Y GG D +
Sbjct: 126 LYVGGGNANGKPSNKFYCFNLETQEWEELPDFPGAPRVQPVCVKLQNEL-YVFGGGDNIA 184
Query: 348 YLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKE 407
Y DG+ +Y PK
Sbjct: 185 YT--------------------------------DGY-----------------KYSPKT 195
Query: 408 NKWSRVAPMTTRRLGVAVAVLGGFLYAIGGS 438
W +VA + G +++LG AI S
Sbjct: 196 GTWEKVADPLSD--GEPISLLGAASIAINES 224
Score = 28.6 bits (64), Expect = 6.7
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 308 YDPQSSDWKIVAPMSK-RRCGVGVAVLNDLLYAVGG 342
YD +S WK + RCG + + + L+ + G
Sbjct: 276 YDVRSGKWKSIGNSPFVARCGAALLLTGNNLFVING 311
>gnl|CDD|219840 pfam08435, Calici_coat_C, Calicivirus coat protein C-terminal.
This is the calicivirus coat protein (pfam00915)
C-terminal region.
Length = 230
Score = 31.1 bits (71), Expect = 1.2
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 413 VAPMTTRRLGVAVAVLGGFLYAIGGSDG--QSPLNTVERFDPKLNRWTAMAPM---STRR 467
V P T R L A GF+ G P N RF ++R+ +AP+ S RR
Sbjct: 170 VNPDTGRNLFEAKLYPEGFITVNSSGSGPQVLPTNGYFRFVSWVSRFYQLAPVGTGSGRR 229
>gnl|CDD|233976 TIGR02687, TIGR02687, TIGR02687 family protein. Members of this
family are uncharacterized proteins sporadically
distributed in bacteria and archaea, about 880 amino
acids in length. This protein is repeatedly found
upstream of another uncharacterized protein of about 470
amino acids in length, modeled by TIGR02688.
Length = 844
Score = 31.0 bits (70), Expect = 1.7
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 18/107 (16%)
Query: 127 CCEFLKRQLDPSNCLGIRAFADTHS-----CRDLLRIADKFTQHNFQEVMESEEFLILPV 181
FLKR D R ++T + L + + + Q+++E+E F +
Sbjct: 241 ALVFLKRWRDS------RRDSETFEKLSKDIAEELNLEGALDKRDVQKLLEAETFDTIDQ 294
Query: 182 AQLVDIISSDELNVRSEEQVFNAIMSWLKYNVSERRQ-HLAQVLQHV 227
A +V ++ L + A +SW + RR H + +
Sbjct: 295 AIIVHLV--KFLLAPVDSSGEEAYLSW----IDTRRTKHWFSEYEAI 335
>gnl|CDD|227564 COG5239, CCR4, mRNA deadenylase, exonuclease subunit and related
nucleases [RNA processing and modification].
Length = 378
Score = 30.5 bits (69), Expect = 1.8
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 78 EVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLDP 137
EV D +D D L + Y +E V+ ++ D C FLKR +D
Sbjct: 81 EVDAEDFEDFWKDQLGKLGYDGIFIPKERKVKWMIDYD-----TTKVDGCAIFLKRFIDS 135
Query: 138 SNCLGIRAFA 147
S I A
Sbjct: 136 SKLGLILAVT 145
>gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain. This domain contains several
repeats of the PQQ repeat.
Length = 234
Score = 29.7 bits (67), Expect = 3.2
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 18/103 (17%)
Query: 351 SIERYDPQTNQ--WSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKEN 408
+ D T + W D+ T GVAV G LY G+ + L+ +
Sbjct: 4 VVAALDAATGKVLWRVDLGGT---ALGGGVAVDGGRLYVATGKGELVALDA----ATGKL 56
Query: 409 KWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFD 451
W + + + A V GG + + ++ D
Sbjct: 57 LWRKDL---SGEILGAPTVAGGVVVVVTAD------GSLYALD 90
>gnl|CDD|237132 PRK12539, PRK12539, RNA polymerase sigma factor; Provisional.
Length = 184
Score = 29.3 bits (66), Expect = 3.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 51 AHRVVLSACSPYFRAMFTGELAES-RQAE 78
AHR +L S + RA + G+LA R AE
Sbjct: 22 AHRALLERLSGHLRAYYKGKLARIGRGAE 50
>gnl|CDD|199834 cd10276, BamB_YfgL, Beta-barrel assembly machinery (Bam) complex
component B and related proteins. BamB (YflG) is a
non-essential component of the beta-barrel assembly
machinery (Bam), a multi-subunit complex that inserts
proteins with beta-barrel topology into the outer
membrane. BamB has been found to interact with BamA,
which in turn binds and stabilizes pre-folded
beta-barrel proteins; it has been suggested that BamB
participates in the stabilization.
Length = 358
Score = 29.6 bits (67), Expect = 4.3
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 338 YAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDG 393
Y + + YL ++ D T V S G AV DG+LY G DG
Sbjct: 300 YIYVTDNAEGYLYCLKDNDGLTV---ARVEVDYSQYILQGPAVSDGWLY-YGTDDG 351
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 29.3 bits (66), Expect = 5.1
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 19/82 (23%)
Query: 183 QLVDIISSDELNVRSEEQVFNAIMSWLKYNVSERRQHLAQVLQHVRLPLLSPKFLVGTVG 242
+ V+++ E NV + + A SER LAQ + R PL+
Sbjct: 326 RTVELLPDAENNVAKLQALVVA--------SSERLLELAQQWEAHRTPLI---------- 367
Query: 243 SDLLVRSDEACRDLVDEAKNYL 264
D E R+ DE + L
Sbjct: 368 -DEYRSLKEKNRNKEDETQRQL 388
>gnl|CDD|226708 COG4257, Vgb, Streptogramin lyase [Defense mechanisms].
Length = 353
Score = 29.1 bits (65), Expect = 5.3
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 18/119 (15%)
Query: 266 LPQERPLMQGPRTRPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVA-PMSKR 324
+PQ L G R P R W + S+ R+DP + W P SK
Sbjct: 225 VPQPNALKAGSRRIWSDPIGRA--------WITTWGTGSLHRFDPSVTSWIEYPLPGSKA 276
Query: 325 RCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDG 383
R ++ D V + + +I R+DP+T ++ V P R + G LDG
Sbjct: 277 R---PYSMRVDRHGRVWLSEADA--GAIGRFDPETARF--TVLP--IPRPNSGNIQLDG 326
>gnl|CDD|225926 COG3391, COG3391, Uncharacterized conserved protein [Function
unknown].
Length = 381
Score = 29.1 bits (65), Expect = 6.3
Identities = 29/134 (21%), Positives = 45/134 (33%), Gaps = 13/134 (9%)
Query: 326 CGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFL 385
GV V +Y S N + D +N + ++ V V +
Sbjct: 34 GGVAVNPDGTQVYVA-----NSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKV 88
Query: 386 YAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLN 445
Y G N V D N P+ +G+AV G ++Y ++ + N
Sbjct: 89 YVTTGDS-----NTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYV---ANAGNGNN 140
Query: 446 TVERFDPKLNRWTA 459
TV D N+ TA
Sbjct: 141 TVSVIDAATNKVTA 154
>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 28.4 bits (64), Expect = 7.4
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 27/87 (31%)
Query: 229 LPLLSPKFLVGTVGSDLLVRSDEACRDLVDEAKNYLLLPQERPLMQGPRT---RPRKPSR 285
LP ++ F G +G D L R R + +Q RKP
Sbjct: 69 LPAMAGVF--GQLGKDGLARPRTDLRREILR-------------LQAAINAVADCRKP-- 111
Query: 286 RGEVLFAVGGWCSG---DAISSVE-RY 308
V+ AV GWC G D IS+ + RY
Sbjct: 112 ---VIAAVQGWCIGGGVDLISACDMRY 135
>gnl|CDD|225142 COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and
metabolism].
Length = 451
Score = 28.7 bits (65), Expect = 7.9
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 10/62 (16%)
Query: 411 SRVAPMTTRRLGVAVAVLGGFL--YAIGGSDGQSPLN-------TVERFDPKLNRWTAMA 461
+R RR+ + + ++ G+L +G D T F + W A+
Sbjct: 190 NRFGKGFLRRIPILIGLVVGYLLALFMGMVDFSGVAEAPWFALPTPFYFGMAFD-WGAIL 248
Query: 462 PM 463
M
Sbjct: 249 TM 250
>gnl|CDD|146463 pfam03842, Silic_transp, Silicon transporter.
Length = 513
Score = 28.7 bits (64), Expect = 9.1
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 276 PRTRPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLND 335
PRT + G VL ++G C A++ V ++ +++ W+ + GV V +
Sbjct: 214 PRTALQASFFWGRVLMSLGVLCFALAVTLVALFNGKTTMWQFIPN------GVAVVLFFL 267
Query: 336 LLYAVGGHDG 345
L+ VG +G
Sbjct: 268 LMSIVGMLEG 277
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.414
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,885,446
Number of extensions: 2438958
Number of successful extensions: 2159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2113
Number of HSP's successfully gapped: 73
Length of query: 482
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 381
Effective length of database: 6,457,848
Effective search space: 2460440088
Effective search space used: 2460440088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.3 bits)