RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11333
(482 letters)
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 388 bits (999), Expect = e-134
Identities = 82/279 (29%), Positives = 134/279 (48%), Gaps = 12/279 (4%)
Query: 9 SPACLTHTSDKHPRVVLSEVSALRRHRELCDVVL---NVGARKIFAHRVVLSACSPYFRA 65
S H + + RR CD+ L G R+ AHR VL+A + YF
Sbjct: 4 SMEAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTP 63
Query: 66 MFTGELAESRQAEVTIRDIDDV------AMDNLIEFCYTSHITVEESNVQTLLPAACLLQ 119
+ +G+ +ESR V +R ++ +IE+ YT I V +V +L A
Sbjct: 64 LLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFL 123
Query: 120 LVEIQDICCEFLKRQLDPSNCLGIRAFADTHSCRDLLRIADKFTQHNFQEVMESEEFLIL 179
L+ +++ C EFLK++L SNC+ I + A ++ L A + NF +V++ EEF L
Sbjct: 124 LIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTL 183
Query: 180 PVAQLVDIISSDELNVRSEEQVFNAIMSWLKYNVSERRQHLAQVLQHVRLPLLSPKFLVG 239
P + D +S E+ V SEE +F ++ W++ N ER ++ ++ + +RL + P +L
Sbjct: 184 PFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERERYFEELFKLLRLSQMKPTYLTR 243
Query: 240 TVGSDLLVRSDEACRDLVDEAKNYLLLPQERPLMQGPRT 278
V + LV ++E C LV +A L E +Q T
Sbjct: 244 HVKPERLVANNEVCVKLVADAVERHALRAEN--IQ-SGT 279
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 373 bits (959), Expect = e-129
Identities = 65/253 (25%), Positives = 129/253 (50%), Gaps = 8/253 (3%)
Query: 15 HTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFT--GELA 72
+ +H +L +S+ R CD L + +I + +L+A SPY R
Sbjct: 9 VSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKD 68
Query: 73 ESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLK 132
+ ++ + I + M ++++ ++ I + E +Q ++ AA LL L +++ +CCEFL+
Sbjct: 69 DGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 128
Query: 133 RQLDPSNCLGIRAFADTHSCRDLLRIADKFTQHNFQEVMESEEFLILPVAQLVDIISSDE 192
+ NC+GIR FA + + +A ++ + +F++V +EEFL L +L ++IS ++
Sbjct: 129 GCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLEK 188
Query: 193 LNVRSEEQVFNAIMSWLKYNVSERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVRSDEA 252
LNV +E VF A++ W+ ++ R+ H+ V+ + + L +L + ++
Sbjct: 189 LNVGNERYVFEAVIRWIAHDTEIRKVHMKDVMSALWVSGLDSSYLREQ------MLNEPL 242
Query: 253 CRDLVDEAKNYLL 265
R++V E N L
Sbjct: 243 VREIVKECSNIPL 255
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo
sapiens}
Length = 302
Score = 295 bits (758), Expect = 9e-98
Identities = 90/202 (44%), Positives = 120/202 (59%), Gaps = 4/202 (1%)
Query: 276 PRTRPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLND 335
RTR R P +++ VGG + AI SVE YD + W VA + RRC G+ +
Sbjct: 4 VRTRLRTPMNLPKLMVVVGGQ-APKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAG 62
Query: 336 LLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQ 395
L++AVGG +G + +++ YDP +QW+ VA R+++G AVL+G LYAVGG DG
Sbjct: 63 LVFAVGGFNGSLRVRTVDSYDPVKDQWT-SVANMRDRRSTLGAAVLNGLLYAVGGFDGST 121
Query: 396 CLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQS--PLNTVERFDPK 453
L+ VE Y+ K N+W VAPM TRR V V V+GG LYA+GG D S L+TVE ++
Sbjct: 122 GLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNAT 181
Query: 454 LNRWTAMAPMSTRRKHLGCAVF 475
N WT +A MSTRR G V
Sbjct: 182 TNEWTYIAEMSTRRSGAGVGVL 203
Score = 270 bits (692), Expect = 6e-88
Identities = 82/191 (42%), Positives = 114/191 (59%), Gaps = 4/191 (2%)
Query: 290 LFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQS-- 347
L+AVGG+ +SSVE Y+ +S++W VAPM+ RR VGV V+ LLYAVGG+D S
Sbjct: 111 LYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQ 170
Query: 348 YLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKE 407
L+++E Y+ TN+W+ +A ++ R+ GV VL+ LYAVGG DG VE YDP
Sbjct: 171 CLSTVECYNATTNEWT-YIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTT 229
Query: 408 NKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAP-MSTR 466
N W +VA M R V + G LY +GG DG L +VE ++P ++WT ++ MST
Sbjct: 230 NAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTG 289
Query: 467 RKHLGCAVFVG 477
R + G V
Sbjct: 290 RSYAGVTVIDK 300
Score = 210 bits (536), Expect = 1e-64
Identities = 57/155 (36%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Query: 321 MSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAV 380
MS R + + L V G + S+E YD + +W VA S R G+
Sbjct: 2 MS-VRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWH-QVAELPSRRCRAGMVY 59
Query: 381 LDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDG 440
+ G ++AVGG +G + V+ YDP +++W+ VA M RR + AVL G LYA+GG DG
Sbjct: 60 MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDG 119
Query: 441 QSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVF 475
+ L++VE ++ K N W +APM+TRR +G V
Sbjct: 120 STGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV 154
Score = 133 bits (337), Expect = 9e-36
Identities = 39/97 (40%), Positives = 56/97 (57%)
Query: 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQ 346
+L+AVGG SVE YDP ++ W+ VA M+ R GV +N LLY VGG DG
Sbjct: 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGS 263
Query: 347 SYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDG 383
L S+E Y+P T++W+ + ++ R+ GV V+D
Sbjct: 264 CNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDK 300
Score = 63.8 bits (156), Expect = 2e-11
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 290 LFAVGGWCSGDAISSVERYDPQSSDWKIVAP-MSKRRCGVGVAVLNDLL 337
L+ VGG ++SVE Y+P + W +V+ MS R GV V++ L
Sbjct: 254 LYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway,
protein-binding, UBI degradation, UBL conjugation
pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Length = 301
Score = 294 bits (755), Expect = 3e-97
Identities = 79/206 (38%), Positives = 116/206 (56%), Gaps = 5/206 (2%)
Query: 273 MQGPRTRPRKPSRRGEVLFAVGGWCS-GDAISSVERYDPQSSDWKIVAPMSKRRCGVGVA 331
MQGPRTR R + EVL VGG+ S I VE+YDP++ +W + ++++R V
Sbjct: 2 MQGPRTRARLGA--NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV 59
Query: 332 VLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSC--DVAPTTSCRTSVGVAVLDGFLYAVG 389
L+D +Y +GG+DG+S L+S+E D ++ VAP R G L +Y G
Sbjct: 60 SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSG 119
Query: 390 GQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVER 449
G DG + +ERYDP ++WS + M T R G + V G +Y +GG DG + LN+VE+
Sbjct: 120 GFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEK 179
Query: 450 FDPKLNRWTAMAPMSTRRKHLGCAVF 475
+DP WT + PM+T+R G A+
Sbjct: 180 YDPHTGHWTNVTPMATKRSGAGVALL 205
Score = 277 bits (711), Expect = 9e-91
Identities = 73/185 (39%), Positives = 109/185 (58%), Gaps = 1/185 (0%)
Query: 290 LFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYL 349
++ GG+ +S+ERYDP W ++ M R G G+ V + ++Y +GG+DG + L
Sbjct: 115 IYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNIL 174
Query: 350 NSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENK 409
NS+E+YDP T W+ +V P + R+ GVA+L+ +Y VGG DG L+ VE Y+ + +
Sbjct: 175 NSVEKYDPHTGHWT-NVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233
Query: 410 WSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRKH 469
W+ V MTT R V VL G LYAI G DG S L+++E +DP ++ W + M T+R
Sbjct: 234 WTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCD 293
Query: 470 LGCAV 474
G V
Sbjct: 294 AGVCV 298
Score = 204 bits (522), Expect = 1e-62
Identities = 59/140 (42%), Positives = 86/140 (61%), Gaps = 1/140 (0%)
Query: 290 LFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYL 349
++ +GG+ + ++SVE+YDP + W V PM+ +R G GVA+LND +Y VGG DG ++L
Sbjct: 162 IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHL 221
Query: 350 NSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENK 409
+S+E Y+ +T+ W+ V T+ R VG VL G LYA+ G DG L+ +E YDP +
Sbjct: 222 SSVEAYNIRTDSWT-TVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280
Query: 410 WSRVAPMTTRRLGVAVAVLG 429
W V M T+R V VL
Sbjct: 281 WEVVTSMGTQRCDAGVCVLR 300
Score = 133 bits (336), Expect = 2e-35
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQ 346
+ ++ VGG+ +SSVE Y+ ++ W V M+ RC VG VL LYA+ G+DG
Sbjct: 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGN 265
Query: 347 SYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLD 382
S L+SIE YDP + W V + R GV VL
Sbjct: 266 SLLSSIECYDPIIDSWEV-VTSMGTQRCDAGVCVLR 300
Score = 68.1 bits (167), Expect = 7e-13
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 290 LFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLND 335
L+A+ G+ +SS+E YDP W++V M +RC GV VL +
Sbjct: 256 LYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLRE 301
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 287 bits (737), Expect = 1e-94
Identities = 82/210 (39%), Positives = 117/210 (55%), Gaps = 8/210 (3%)
Query: 272 LMQGPRTRPRKPSRR--GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVG 329
PR G +++ GG+ ++S +E Y+P + W +A + R G+
Sbjct: 7 HHHSSGLVPRGSHAPKVGRLIYTAGGY-FRQSLSYLEAYNPSNGTWLRLADLQVPRSGLA 65
Query: 330 VAVLNDLLYAVGGH----DGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFL 385
V+ LLYAVGG DG + ++++ Y+P TNQWS AP + R +GV V+DG +
Sbjct: 66 GCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS-PCAPMSVPRNRIGVGVIDGHI 124
Query: 386 YAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLN 445
YAVGG G N VERY+P+ ++W VAPM TRR+GV VAVL LYA+GG DG + LN
Sbjct: 125 YAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLN 184
Query: 446 TVERFDPKLNRWTAMAPMSTRRKHLGCAVF 475
+ E + P+ N W + M+T R G V
Sbjct: 185 SAECYYPERNEWRMITAMNTIRSGAGVCVL 214
Score = 275 bits (706), Expect = 7e-90
Identities = 85/185 (45%), Positives = 115/185 (62%), Gaps = 1/185 (0%)
Query: 290 LFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYL 349
++AVGG +SVERY+P+ +W +VAPM RR GVGVAVLN LLYAVGG DG + L
Sbjct: 124 IYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL 183
Query: 350 NSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENK 409
NS E Y P+ N+W + + R+ GV VL +YA GG DG LN VERYD +
Sbjct: 184 NSAECYYPERNEWR-MITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET 242
Query: 410 WSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRKH 469
W+ VAPM RR + + V G +Y +GG DG + L++VE +DP + W+ + M++ R
Sbjct: 243 WTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSG 302
Query: 470 LGCAV 474
+G AV
Sbjct: 303 VGVAV 307
Score = 274 bits (702), Expect = 3e-89
Identities = 87/195 (44%), Positives = 116/195 (59%), Gaps = 5/195 (2%)
Query: 287 GEVLFAVGGWCSGD----AISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGG 342
G +L+AVGG + S+++ Y+P ++ W APMS R +GV V++ +YAVGG
Sbjct: 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG 129
Query: 343 HDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVER 402
G + NS+ERY+P+ ++W VAP + R VGVAVL+ LYAVGG DG LN E
Sbjct: 130 SHGCIHHNSVERYEPERDEWHL-VAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAEC 188
Query: 403 YDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAP 462
Y P+ N+W + M T R G V VL +YA GG DGQ LN+VER+D + WT +AP
Sbjct: 189 YYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 248
Query: 463 MSTRRKHLGCAVFVG 477
M RR LG V G
Sbjct: 249 MKHRRSALGITVHQG 263
Score = 130 bits (328), Expect = 2e-34
Identities = 42/94 (44%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQ 346
++A GG+ D ++SVERYD ++ W VAPM RR +G+ V +Y +GG+DG
Sbjct: 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH 274
Query: 347 SYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAV 380
++L+S+E YDP T+ WS +V TS R+ VGVAV
Sbjct: 275 TFLDSVECYDPDTDTWS-EVTRMTSGRSGVGVAV 307
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural
genomics, structur genomics consortium, SGC, kelch
repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Length = 306
Score = 271 bits (694), Expect = 4e-88
Identities = 49/207 (23%), Positives = 82/207 (39%), Gaps = 12/207 (5%)
Query: 276 PRTRPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLND 335
TRPR+ + A+ G G S ++P+ W + ++R ++
Sbjct: 2 MGTRPRRKK--HDYRIALFG---GSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDN 56
Query: 336 LLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQD-GV 394
++Y +GG + ++ Y+ + W + R S+ +G +Y GG + G
Sbjct: 57 VVYILGGSQL-FPIKRMDCYNVVKDSWY-SKLGPPTPRDSLAACAAEGKIYTSGGSEVGN 114
Query: 395 QCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQS----PLNTVERF 450
L E YD + W M T+R + G +Y GGS G + LN+ E +
Sbjct: 115 SALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVY 174
Query: 451 DPKLNRWTAMAPMSTRRKHLGCAVFVG 477
DP WT + PM RK+ G
Sbjct: 175 DPATETWTELCPMIEARKNHGLVFVKD 201
Score = 269 bits (690), Expect = 2e-87
Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 7/193 (3%)
Query: 290 LFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHD-GQSY 348
++ +GG I ++ Y+ W R + +Y GG + G S
Sbjct: 58 VYILGG-SQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSA 116
Query: 349 LNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGV----QCLNHVERYD 404
L E YD +T W + R S G+ +G +Y GG G + LN E YD
Sbjct: 117 LYLFECYDTRTESWHT-KPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYD 175
Query: 405 PKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMS 464
P W+ + PM R + + ++A+GG +G L+ VE +D KLN W ++PM
Sbjct: 176 PATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP 235
Query: 465 TRRKHLGCAVFVG 477
+ + CA
Sbjct: 236 WKGVTVKCAAVGS 248
Score = 266 bits (682), Expect = 2e-86
Identities = 59/196 (30%), Positives = 97/196 (49%), Gaps = 7/196 (3%)
Query: 290 LFAVGGWCSGD-AISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQS- 347
++ GG G+ A+ E YD ++ W M +RC G+ N L+Y GG G +
Sbjct: 104 IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNV 163
Query: 348 ---YLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYD 404
LNS E YDP T W+ ++ P R + G+ + ++AVGGQ+G+ L++VE YD
Sbjct: 164 SGRVLNSCEVYDPATETWT-ELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYD 222
Query: 405 PKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMS 464
K N+W V+PM + + V A +G +Y + G G L + ++ + ++W A + +
Sbjct: 223 IKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVR 282
Query: 465 TRRKHLGCAVFVGDNG 480
C + V D
Sbjct: 283 AFP-VTSCLICVVDTC 297
Score = 129 bits (327), Expect = 3e-34
Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 5/107 (4%)
Query: 371 SCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGG 430
S T D + GG ++PK+ W+ + +R A
Sbjct: 1 SMGTRPRRKKHDYRIALFGGSQ----PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDN 56
Query: 431 FLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVG 477
+Y +GGS P+ ++ ++ + W + T R L G
Sbjct: 57 VVYILGGSQL-FPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEG 102
Score = 128 bits (324), Expect = 7e-34
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQ 346
+ +FAVGG + +VE YD + ++WK+V+PM + V A + ++Y + G G
Sbjct: 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGV 259
Query: 347 SYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGG 390
L I Y+ +T++W + TS + V+D G
Sbjct: 260 GRLGHILEYNTETDKWVANSKVRAFPVTSCLICVVD-----TCG 298
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding,
invasion and metastasis, UBL conjugation pathway, UBL
protein folding; 2.00A {Rattus norvegicus}
Length = 318
Score = 267 bits (685), Expect = 1e-86
Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 11/214 (5%)
Query: 271 PLMQGPRTRPRKPSRRGEVLFAVGGWCSGD------AISSVERYDPQSSDWKIVAPMSKR 324
Q PR +++ +V + VGG + S + D SS+W + P+
Sbjct: 41 LAEQIPRNHSSIVTQQNQV-YVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA 99
Query: 325 RCGVGVAVLNDLLYAVGGHD--GQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLD 382
RC G+ ++D +Y V G D ++ L+S+ YDP +WS V V +
Sbjct: 100 RCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE-VKNLPIKVYGHNVISHN 158
Query: 383 GFLYAVGGQ-DGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQ 441
G +Y +GG+ D +C N V Y+PK+ W +APM T R VA+ G + GG
Sbjct: 159 GMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTED 218
Query: 442 SPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVF 475
+VE FD K N+W M R +
Sbjct: 219 GLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL 252
Score = 261 bits (670), Expect = 2e-84
Identities = 51/212 (24%), Positives = 83/212 (39%), Gaps = 18/212 (8%)
Query: 274 QGPRTRPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVA-PMSKRRCGVGVAV 332
PR +++ V ++ YDP ++ + A R +
Sbjct: 2 GYLNDIPRHGMFVKDLILLVND-------TAAVAYDPMENECYLTALAEQIPRNHSSIVT 54
Query: 333 LNDLLYAVGGHDGQ------SYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLY 386
+ +Y VGG + + D +++W + P S R G+ +D +Y
Sbjct: 55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV-GLPPLPSARCLFGLGEVDDKIY 113
Query: 387 AVGGQD--GVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGG-SDGQSP 443
V G+D L+ V YDP KWS V + + G V G +Y +GG +D +
Sbjct: 114 VVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKC 173
Query: 444 LNTVERFDPKLNRWTAMAPMSTRRKHLGCAVF 475
N V ++PK W +APM T R G A+
Sbjct: 174 TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH 205
Score = 258 bits (661), Expect = 6e-83
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 15/200 (7%)
Query: 290 LFAVGGW--CSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGH-DGQ 346
++ V G + ++ SV YDP ++ W V + + G V N ++Y +GG D +
Sbjct: 112 IYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDK 171
Query: 347 SYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPK 406
N + Y+P+ W D+AP + R+ GVA+ G + GG VE +D K
Sbjct: 172 KCTNRVFIYNPKKGDWK-DLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLK 230
Query: 407 ENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDG---------QSPLNTVERFDPKLNRW 457
NKW + R +++ L G LYAIGG + +N + +++ W
Sbjct: 231 TNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW 290
Query: 458 TAMAPMSTRRKHLGCAVFVG 477
M R G +
Sbjct: 291 AGMLKE--IRYASGASCLAT 308
Score = 199 bits (507), Expect = 3e-60
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 11/158 (6%)
Query: 290 LFAVGGWCSGDAI-SSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSY 348
++ +GG + V Y+P+ DWK +APM R GVA+ + GG
Sbjct: 161 IYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGL 220
Query: 349 LNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQC---------LNH 399
S+E +D +TN+W + R+S+ + L G LYA+GG +Q +N
Sbjct: 221 SASVEAFDLKTNKWE-VMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVND 279
Query: 400 VERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGG 437
+ +Y+ + +W+ + G + L+ +
Sbjct: 280 IWKYEDDKKEWAGMLKEIRYASGASCLATRLNLFKLSK 317
Score = 186 bits (474), Expect = 2e-55
Identities = 27/163 (16%), Positives = 57/163 (34%), Gaps = 18/163 (11%)
Query: 323 KRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLD 382
R G+ + DL+ V + YDP N+ R +
Sbjct: 7 IPRHGMF---VKDLILLVND-------TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQ 56
Query: 383 GFLYAVGGQDGVQ------CLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIG 436
+Y VGG + ++ + D ++W + P+ + R + + +Y +
Sbjct: 57 NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVA 116
Query: 437 GSD--GQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVG 477
G D ++ L++V +DP +W+ + + + G
Sbjct: 117 GKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNG 159
Score = 127 bits (320), Expect = 3e-33
Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 14/115 (12%)
Query: 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDG- 345
+ GG +SVE +D +++ W+++ + R + + L LYA+GG
Sbjct: 206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMI 265
Query: 346 --------QSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLY--AVGG 390
+ +N I +Y+ +W+ R + G + L L +
Sbjct: 266 QLESKEFAPTEVNDIWKYEDDKKEWA---GMLKEIRYASGASCLATRLNLFKLSK 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding,
cytoskeleton; 1.78A {Homo sapiens}
Length = 315
Score = 261 bits (670), Expect = 2e-84
Identities = 52/217 (23%), Positives = 83/217 (38%), Gaps = 12/217 (5%)
Query: 271 PLMQGPRTRPRKPSRRGEVLFAVGGW------CSGDAISSVERYDPQSSDWKIVAPMSKR 324
Q P+ ++ +V F GG + ++D S+W + P+
Sbjct: 30 LSSQVPKNHVSLVTKENQV-FVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSP 88
Query: 325 RCGVGVAVLNDLLYAVGGH---DGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVL 381
RC G+ + +Y VGG DG+ L+S+ YD + +W P V
Sbjct: 89 RCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE-SDPLPYVVYGHTVLSH 147
Query: 382 DGFLYAVGGQ-DGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDG 440
+Y +GG+ +CLN + YDPK+ +W +APM T R V G + G
Sbjct: 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTD 207
Query: 441 QSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVG 477
++ E + N+W R L VG
Sbjct: 208 TGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVG 244
Score = 258 bits (660), Expect = 6e-83
Identities = 51/201 (25%), Positives = 79/201 (39%), Gaps = 16/201 (7%)
Query: 290 LFAVGGWCSGD---AISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGH-DG 345
++ VGG D + SV YD S W P+ G V DL+Y +GG
Sbjct: 101 IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSD 160
Query: 346 QSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDP 405
+ LN + YDP+ +W ++AP + R+ G V DG + G + E Y
Sbjct: 161 RKCLNKMCVYDPKKFEWK-ELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSI 219
Query: 406 KENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDG---------QSPLNTVERFDPKLNR 456
+NKW+ R +++ L G LYAIGG + LN + R++ + +
Sbjct: 220 TDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279
Query: 457 WTAMAPMSTRRKHLGCAVFVG 477
W + G
Sbjct: 280 WEGVLREIAYA--AGATFLPV 298
Score = 244 bits (625), Expect = 9e-78
Identities = 46/199 (23%), Positives = 74/199 (37%), Gaps = 19/199 (9%)
Query: 288 EVLFAVGGWCSGDAISSVERYDPQSSDWKIV-APMSKRRCGVGVAVLNDLLYAVGGHDGQ 346
+++F + YDP +++ + V + + ++ GG
Sbjct: 5 DLIFMISE-------EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYN 57
Query: 347 SYLNS------IERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQ---DGVQCL 397
++D ++W + P S R G+ +Y VGG+ DG +CL
Sbjct: 58 EDNKEDPMSAYFLQFDHLDSEWL-GMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCL 116
Query: 398 NHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGG-SDGQSPLNTVERFDPKLNR 456
+ V YD KW P+ G V +Y IGG + LN + +DPK
Sbjct: 117 DSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE 176
Query: 457 WTAMAPMSTRRKHLGCAVF 475
W +APM T R G V
Sbjct: 177 WKELAPMQTARSLFGATVH 195
Score = 208 bits (531), Expect = 9e-64
Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 13/165 (7%)
Query: 290 LFAVGGWCSGDAI-SSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSY 348
++ +GG S + + YDP+ +WK +APM R G V + + G
Sbjct: 151 VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGL 210
Query: 349 LNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQC---------LNH 399
+S E Y N+W+ R+S+ + L G LYA+GG ++ LN
Sbjct: 211 TSSAEVYSITDNKWAP-FEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELND 269
Query: 400 VERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPL 444
+ RY+ +E KW V G L L + + L
Sbjct: 270 IWRYNEEEKKWEGVLREIAYAAGATF--LPVRLNVLRLTKMAENL 312
Score = 184 bits (469), Expect = 1e-54
Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 16/154 (10%)
Query: 333 LNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQD 392
L DL++ + YDP N+ C + + V + + ++ GG
Sbjct: 3 LQDLIFMISE-------EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLF 55
Query: 393 GVQ------CLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGG---SDGQSP 443
+ + ++D +++W + P+ + R + +Y +GG DG+
Sbjct: 56 YNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERC 115
Query: 444 LNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVG 477
L++V +D +W P+ +
Sbjct: 116 LDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMD 149
Score = 136 bits (345), Expect = 1e-36
Identities = 24/120 (20%), Positives = 37/120 (30%), Gaps = 12/120 (10%)
Query: 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDG- 345
+ G SS E Y + W + R + + L LYA+GG
Sbjct: 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATL 255
Query: 346 --------QSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCL 397
+ LN I RY+ + +W V + G L L + + L
Sbjct: 256 ETESGELVPTELNDIWRYNEEEKKWEG-VLREIAYA--AGATFLPVRLNVLRLTKMAENL 312
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 209 bits (533), Expect = 7e-66
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 1/162 (0%)
Query: 14 THTSDKHPRVVLSE-VSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELA 72
T K P L++ + L + D L V ++ AH+ +L+A SP F AMF E+
Sbjct: 10 TMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEME 69
Query: 73 ESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLK 132
ES++ V I D++ ++ F YT + LL AA L ++ +C + L
Sbjct: 70 ESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALC 129
Query: 133 RQLDPSNCLGIRAFADTHSCRDLLRIADKFTQHNFQEVMESE 174
L N I AD HS L A F ++ +V+E+
Sbjct: 130 SNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETS 171
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 197 bits (502), Expect = 7e-62
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 4/137 (2%)
Query: 14 THTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAE 73
+ S H VL E++ R + CD L+VG AH VL+ CS +F+ ++
Sbjct: 2 SSGSSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGG 61
Query: 74 SRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLKR 133
S V + L++F YT H+ + N +L AA L++ E ++C F +
Sbjct: 62 S----VVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQ 117
Query: 134 QLDPSNCLGIRAFADTH 150
G+ +
Sbjct: 118 TSVGQAQSGLGQSGPSS 134
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 190 bits (484), Expect = 4e-59
Identities = 38/125 (30%), Positives = 56/125 (44%)
Query: 31 LRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDVAMD 90
L + D L V ++ AH+ +L+A SP F AMF E+ ES++ V I D++
Sbjct: 19 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFK 78
Query: 91 NLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLDPSNCLGIRAFADTH 150
++ F YT + LL AA L ++ +C + L L N I AD H
Sbjct: 79 EMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLH 138
Query: 151 SCRDL 155
S L
Sbjct: 139 SADQL 143
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 195 bits (498), Expect = 6e-59
Identities = 44/170 (25%), Positives = 70/170 (41%)
Query: 5 DRPASPACLTHTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFR 64
S + + E+ L + D L V ++ AH+ +L+A SP F
Sbjct: 142 SVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS 201
Query: 65 AMFTGELAESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQ 124
AMF E+ ES++ V I D++ ++ F YT + LL AA L ++
Sbjct: 202 AMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLK 261
Query: 125 DICCEFLKRQLDPSNCLGIRAFADTHSCRDLLRIADKFTQHNFQEVMESE 174
+C + L L N I AD HS L A F ++ +V+E+
Sbjct: 262 VMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETS 311
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 185 bits (473), Expect = 1e-57
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 7 PASPACLTHTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAM 66
+ A + S H VL ++ R+ LCDV + V ++ AHR VL+ACS YF +
Sbjct: 6 VSESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSR 65
Query: 67 FTGELAESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDI 126
G+ ++ ++ + LI+F YT+ + + + NV + L + I++
Sbjct: 66 IVGQ-TDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEES 124
Query: 127 CCEFLK-RQLDPSN 139
C +FLK + LD ++
Sbjct: 125 CFQFLKFKFLDSTS 138
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 181 bits (461), Expect = 6e-56
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Query: 9 SPACLTHTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFT 68
S + + S H VL ++ R+ LCDV + V ++ AHR VL+ACS YF +
Sbjct: 1 SMSVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIV 60
Query: 69 GELAESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICC 128
G+ A+ ++ + LI+F YT+ + + + NV + L + I++ C
Sbjct: 61 GQ-ADGELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCF 119
Query: 129 EFLK 132
+FLK
Sbjct: 120 QFLK 123
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 181 bits (461), Expect = 1e-55
Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 1 MGLADRPASPACLTHTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACS 60
+ L + + +H +L +S+ R CD L + +I + +L+A S
Sbjct: 11 VDLGTENLYFQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAAS 70
Query: 61 PYFRAMFTGELA--ESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLL 118
PY R + ++ + I + M ++++ ++ I + E +Q ++ AA LL
Sbjct: 71 PYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLL 130
Query: 119 QLVEIQDICCEFLK 132
L +++ +CCEFL+
Sbjct: 131 LLTDLKTLCCEFLE 144
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 177 bits (452), Expect = 2e-54
Identities = 36/116 (31%), Positives = 60/116 (51%)
Query: 17 SDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQ 76
+H VL ++ LR L DVV+ V + AH+ VL ACS F ++FT +L +
Sbjct: 9 FTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLS 68
Query: 77 AEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLK 132
+I+ + L++F YTS + + E N+ ++ A LQ+ + D C +F+K
Sbjct: 69 VINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIK 124
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 175 bits (445), Expect = 1e-53
Identities = 40/112 (35%), Positives = 62/112 (55%)
Query: 20 HPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEV 79
H +LS ++ R LCDVV+ V R+ HR VL+ACS YF+ +FT +Q
Sbjct: 8 HSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVY 67
Query: 80 TIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFL 131
I + A+ L++F YT+ +TV +NV +L AA LL++ + +C + L
Sbjct: 68 EIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLL 119
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 174 bits (443), Expect = 3e-53
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Query: 7 PASPACLTHTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAM 66
P + S H +L ++ R+ LCDV L V ++ AHR VL+ACS YF
Sbjct: 2 PLGSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQA 61
Query: 67 FTGELAESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDI 126
G+ ++ L++F YT+ + + N++ ++ A L++ ++D
Sbjct: 62 LVGQTKNDLV-VSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDS 120
Query: 127 CCEFL 131
C FL
Sbjct: 121 CFSFL 125
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 165 bits (420), Expect = 5e-50
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 16 TSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESR 75
+ H +L ++ R LCD + +G + AHR VL++ S YF A++
Sbjct: 1 SMSHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST--SEN 58
Query: 76 QAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLK 132
+ + L+EF YT + ++ NV+ + AA L++ E+ C ++
Sbjct: 59 NVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 164 bits (418), Expect = 9e-50
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 30 ALRRHRELCDVVLNVGA----RKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDID 85
++ + + DV VG R + AH+ VL+ S F AMF G+LAE + E+ I D++
Sbjct: 1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKS-EIHIPDVE 59
Query: 86 DVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLKRQL 135
A L+++ Y+ I +E V L AA + + C FL+ L
Sbjct: 60 PAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETSL 109
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 164 bits (418), Expect = 1e-49
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 12 CLTHTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGEL 71
+ + HP +L + + +R LCDVV+ V +++ AHR VL+ S F +F
Sbjct: 3 MIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFH--- 59
Query: 72 AESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFL 131
T+ + ++E+ YT+ + + ++ LL AA +L++ +++ C + L
Sbjct: 60 --RNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKML 117
Query: 132 K 132
+
Sbjct: 118 E 118
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 163 bits (414), Expect = 5e-49
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 3/128 (2%)
Query: 8 ASPACLTHTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMF 67
S L +L ++ R CDV + V AHR VL+A S YFR +F
Sbjct: 4 GSAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLF 63
Query: 68 TGELAESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDIC 127
+ + + + ++ FCYT +++ + L+ A LQ+ EI +
Sbjct: 64 NNSRSAVVE---LPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKG 120
Query: 128 CEFLKRQL 135
EF +
Sbjct: 121 TEFFLKVS 128
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 162 bits (411), Expect = 1e-48
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 14 THTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAE 73
+ + +H VL E++ R + CD L+VG AH VL+ CS +F++++ +
Sbjct: 1 SMSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYG----D 56
Query: 74 SRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLKR 133
V + L++F YT H+ + N +L AA L++ E ++C F +
Sbjct: 57 GSGGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQSFKPK 116
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 155 bits (395), Expect = 2e-46
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 19 KHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAE 78
+H + VL +++ R+ LCD V AH+ VL+ACS YF+ +F ++
Sbjct: 9 QHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFV-----DQKDV 63
Query: 79 VTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLK 132
V + + + ++EF YT+ +++ NV +L A LQ+ +I C
Sbjct: 64 VHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKS 117
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 105
Score = 152 bits (386), Expect = 3e-45
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 130 FLKRQLDPSNCLGIRAFADTHSCRDLLRIADKFTQHNFQEVMESEEFLILPVAQLVDIIS 189
+ NCL + AD HS +L A + + ++ +EEFL LP L DIIS
Sbjct: 3 SGSSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIIS 62
Query: 190 SDELNVRSEEQVFNAIMSWLKYNVSERRQHLAQVLQHVRL 229
V + AI +W+ +N ER + ++
Sbjct: 63 DG---VPCSQNPTEAIEAWINFNKEEREAFAESLRTSLKE 99
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid
metabolism, kelch repeat, beta-propeller; HET: MSE;
1.50A {Escherichia coli}
Length = 357
Score = 159 bits (404), Expect = 8e-45
Identities = 28/196 (14%), Positives = 54/196 (27%), Gaps = 22/196 (11%)
Query: 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPM-SKRRCGVGVAVLNDLLYAVGGHDG 345
+ ++ G +G A ++ + W +A R A ++ LY GG
Sbjct: 19 NDTVYIGLG-SAGTAWYKLD-TQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGK 76
Query: 346 QS-----YLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHV 400
S N + +Y+P+TN W ++ V +G Y GG + +
Sbjct: 77 NSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYF 136
Query: 401 ERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAM 460
E + + + + + FDP +W+
Sbjct: 137 EDLNEAGKDSTAIDKINAHYFDKKAEDYFF-------------NKFLLSFDPSTQQWSYA 183
Query: 461 APMS-TRRKHLGCAVF 475
Sbjct: 184 GESPWYGTAGAAVVNK 199
Score = 147 bits (372), Expect = 3e-40
Identities = 33/169 (19%), Positives = 54/169 (31%), Gaps = 8/169 (4%)
Query: 317 IVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSV 376
++ A+ ND +Y G G ++ + +W+ A R
Sbjct: 2 VLPETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKL--DTQAKDKKWTALAAFPGGPRDQA 59
Query: 377 GVAVLDGFLYAVGGQD-----GVQCLNHVERYDPKENKWSRVA-PMTTRRLGVAVAVLGG 430
A +DG LY GG Q N V +Y+PK N W ++ G V G
Sbjct: 60 TSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNG 119
Query: 431 FLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVGDN 479
Y GG + E + TA+ ++ + +
Sbjct: 120 KAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNK 168
Score = 132 bits (334), Expect = 8e-35
Identities = 27/230 (11%), Positives = 56/230 (24%), Gaps = 37/230 (16%)
Query: 271 PLMQGPRTRPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGV 330
G+ + GG E + D + ++
Sbjct: 103 SHAPMGMAGHVTFVHNGK-AYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA 161
Query: 331 AVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGG 390
+ + +DP T QWS V + + G
Sbjct: 162 EDYF-------------FNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLING 208
Query: 391 QDGVQC-LNHVERY--DPKENKWSRVAPMT--TRRLGVAVAVLGGFLYAIGGS------- 438
+ + V KW+++AP++ G + L GG+
Sbjct: 209 EAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRE 268
Query: 439 ----------DGQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVGD 478
+G + + +W +S R + G ++ +
Sbjct: 269 NYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY-GVSLPWNN 317
Score = 130 bits (329), Expect = 3e-34
Identities = 28/189 (14%), Positives = 50/189 (26%), Gaps = 23/189 (12%)
Query: 304 SVERYDPQSSDWKIVAPMS-KRRCGVGVAVLNDLLYAVGGHDGQ-SYLNSIERYDPQTNQ 361
+ +DP + W G V D + + G +++ D N
Sbjct: 169 FLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNN 228
Query: 362 WS-CDVAPTTSCRTSVG--VAVLDGFLYAVGG-----------------QDGVQCLNHVE 401
+AP +S G + + L GG +G++ +
Sbjct: 229 LKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTD 288
Query: 402 RYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQ-SPLNTVERFDPKLNRWTAM 460
+ KW + ++ R L IGG + K N+ T
Sbjct: 289 IHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348
Query: 461 APMSTRRKH 469
H
Sbjct: 349 NLEHHHHHH 357
Score = 62.7 bits (152), Expect = 8e-11
Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 1/69 (1%)
Query: 296 WCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQ-SYLNSIER 354
S + + + W +S+ R N+ L +GG +
Sbjct: 278 HEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVL 337
Query: 355 YDPQTNQWS 363
+ N+ +
Sbjct: 338 ITVKDNKVT 346
Score = 58.4 bits (141), Expect = 2e-09
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 7/67 (10%)
Query: 411 SRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFD--PKLNRWTAMAPM-STRR 467
S + A+ +Y GS G + D K +WTA+A R
Sbjct: 1 SVLPETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAFPGGPR 56
Query: 468 KHLGCAV 474
A
Sbjct: 57 DQATSAF 63
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 148 bits (377), Expect = 1e-43
Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 10/125 (8%)
Query: 10 PACLTHTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTG 69
+ L ++ A R LCD ++ VG+++ AH +VL+ S
Sbjct: 4 SLPPIRLPSPYGSDRLVQL-AARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQ- 61
Query: 70 ELAESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCE 129
I L+ F Y + ++ ++ L AA L + +++ C
Sbjct: 62 --------WALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEACWR 113
Query: 130 FLKRQ 134
+
Sbjct: 114 ARGDR 118
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 143 bits (363), Expect = 1e-41
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 8 ASPACLTHTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMF 67
S ++ T ++ +L+ ++ R H CDV + V RK AH+ +LSA S YF +F
Sbjct: 2 ESRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLF 61
Query: 68 TGELAESRQAEVTIRDIDDVAMDNLIEFCYTSHIT-VEESNVQTLLPAACLLQLVEIQDI 126
+ V + I ++ + Y+S I V + L+ + LL + I +
Sbjct: 62 S-----VAGQVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAAL 116
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence
form, precursor of copper enzyme., oxidoreductase; 1.40A
{Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB:
1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A
2eib_A 1t2x_A 2eid_A 2wq8_A
Length = 656
Score = 105 bits (261), Expect = 4e-24
Identities = 41/243 (16%), Positives = 73/243 (30%), Gaps = 33/243 (13%)
Query: 269 ERPLMQGPRTRPRKPSRRGEVLFAVGGWCSGDAI-SSVERYDPQSSDWKIVAPMSKRR-- 325
P MQ R + +F +GG SG + E Y P S W +
Sbjct: 279 PGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPML 338
Query: 326 --CGVGVAVLNDLLYAVGGHDGQ-----SYLNSIERYDPQTNQWSC--------DVAPTT 370
G+ ++ + G G Y + VAP
Sbjct: 339 TADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDA 398
Query: 371 SCRTSVGVAVLDGFLYAVGGQ------DGVQCLNHVERYDPKENK--WSRVAPMTTRRL- 421
C +V + G + GG D + + +P + + R
Sbjct: 399 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTF 458
Query: 422 GVAVAVLGGFLYAIGGS------DGQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVF 475
+V + G + GG + +P+ T E + P+ + + P S R + ++
Sbjct: 459 HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLL 518
Query: 476 VGD 478
+ D
Sbjct: 519 LPD 521
Score = 89.6 bits (221), Expect = 3e-19
Identities = 35/210 (16%), Positives = 59/210 (28%), Gaps = 28/210 (13%)
Query: 296 WCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLND-LLYAVGGH-DGQSYLNSIE 353
G+ YD S W M R A ++D ++ +GG G + + E
Sbjct: 258 VTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGE 317
Query: 354 RYDPQTNQWSC---DVAPTTSCRTSVGVAVLDGFLYAVGGQDGV-----QCLNHVERYDP 405
Y P + W+ G+ D + G + G Y
Sbjct: 318 VYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377
Query: 406 KENKWSRVAPMTTRRLGVAVAVLG---------GFLYAIGGS------DGQSPLNTVERF 450
+ R A+ G G + GGS D + + +
Sbjct: 378 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLG 437
Query: 451 DPKLNRWT--AMAPMSTRRKHLGCAVFVGD 478
+P + T A + R +V + D
Sbjct: 438 EPGTSPNTVFASNGLYFARTF-HTSVVLPD 466
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A
{Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Length = 695
Score = 82.5 bits (203), Expect = 8e-17
Identities = 25/216 (11%), Positives = 57/216 (26%), Gaps = 29/216 (13%)
Query: 290 LFAVGGWCS-GDAISSVERYDPQSSDWKIVAPMSKRRCG-VGVAVLNDLLYAVGGHDGQS 347
L +GG + +S +D ++ +W ++ +S R ++ + + +GG
Sbjct: 454 LLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEG- 512
Query: 348 YLNSIERYDPQTNQWSC-------DVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHV 400
++ Y+ + S G + G D +
Sbjct: 513 --PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKA 570
Query: 401 ERYDPKENKWSRV--------APMTTRRLGVAVAVLGGFLYAIGGSDGQSPL---NTVER 449
+ + P+ R + L +GG+ N++
Sbjct: 571 IIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS 630
Query: 450 FDPKLNRWTAMAPMSTRRKHLG------CAVFVGDN 479
DP T++ + V
Sbjct: 631 LDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMG 666
Score = 81.3 bits (200), Expect = 1e-16
Identities = 26/176 (14%), Positives = 56/176 (31%), Gaps = 19/176 (10%)
Query: 319 APMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTS------- 371
R V V + ++ +GG + +N I + ++ +S
Sbjct: 382 CECPINRKFGDVDVAGNDVFYMGGSNPYR-VNEILQLSIHYDKIDMKNIEVSSSEVPVAR 440
Query: 372 -CRTSVGVAVLDGFLYAVGGQDG-VQCLNHVERYDPKENKWSRVAPMTTRRLG-VAVAVL 428
C T ++ + L +GG+ Q L+ +D K +WS + ++ R A ++
Sbjct: 441 MCHTFTTIS-RNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP 499
Query: 429 GGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPM----STRRKHLGCAVFVGDNG 480
G + +GG + ++ + + P G
Sbjct: 500 DGNVLILGGVTEG---PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ 552
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 2e-07
Identities = 90/551 (16%), Positives = 158/551 (28%), Gaps = 202/551 (36%)
Query: 40 VVLNVGARKIFAHRVVLSACSPYFRA-----MFTGELAESRQAEVTIRDIDDVAMDNLI- 93
+ L+ G+ H +++ + +F A F L E E D + L+
Sbjct: 9 LTLSHGS---LEHVLLVPT-ASFFIASQLQEQFNKILPEP--TEGFAADDEPTTPAELVG 62
Query: 94 EF-CYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLK--------RQLDPSNCLG-- 142
+F Y S VE S V +L L + + +L+ +L N
Sbjct: 63 KFLGYVSS-LVEPSKVGQFDQ---VLNLC-LTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 143 -----IRAF--ADTHSCR--------DLLRIADK-----FT----QHN----FQEVME-- 172
I+ + A + R L R + Q N F+E+ +
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 173 --SEEF---LILPVAQLVDIISSDELNVRSE-EQVFNAIMSWLKYNVSER--RQHLAQVL 224
LI A+ + + L+ Q N I+ WL+ N S + +L +
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-ILEWLE-NPSNTPDKDYLLSIP 235
Query: 225 QHVRLPL-----------------LSP----KFLVG--TVGSDLLV-----RSDEACRDL 256
+ PL +P +L G L+ +D
Sbjct: 236 --ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW-ESF 292
Query: 257 VDEAKNYLLLPQERPLMQGPRTRPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWK 316
+ + VLF +G + E Y S
Sbjct: 293 FVSVRKAI-----------------------TVLFFIG-------VRCYEAYPNTSLPPS 322
Query: 317 IVA-----------PMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCD 365
I+ PM +++ N V Q Y+N + P Q
Sbjct: 323 ILEDSLENNEGVPSPM--------LSISNLTQEQV-----QDYVNKTNSHLPAGKQ---- 365
Query: 366 VAPTTSCRTSVGVA--------VLDGF---LYAVGGQDGVQCLN-HVERYD-PKENKWSR 412
V ++ V+ G LY LN + + P SR
Sbjct: 366 ----------VEISLVNGAKNLVVSGPPQSLYG---------LNLTLRKAKAPSGLDQSR 406
Query: 413 VAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNT--VERFDPKLNRWTAMAPMSTRRKHL 470
+ P + R+L + FL + SP ++ + +N+ +S K +
Sbjct: 407 I-PFSERKLKFSN----RFL-PVA-----SPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 471 GCAVFVGDNGA 481
V+ +G+
Sbjct: 456 QIPVYDTFDGS 466
Score = 41.2 bits (96), Expect = 8e-04
Identities = 53/341 (15%), Positives = 100/341 (29%), Gaps = 141/341 (41%)
Query: 1 MGLADRPASPA--CLTHTSDKHPRVVLSEVSALRRHRELCDVVLN-----------VGAR 47
MG+ S A + + +D H + S L D+V+N +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYG-FSIL-------DIVINNPVNLTIHFGGEKGK 1682
Query: 48 KIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDVAMDNLIEFCYTS-----HIT 102
+I + Y +F + + E ++I+ ++ + + S T
Sbjct: 1683 RIREN---------YSAMIFETIVDGKLKTEKIFKEIN----EHSTSYTFRSEKGLLSAT 1729
Query: 103 VEESNVQTLLPAACLLQLVEIQDICCEFLK-RQLDPSNCLGIRAFADTHS--------CR 153
Q PA L L+E E LK + L P++ FA HS
Sbjct: 1730 ---QFTQ---PA--LT-LMEK--AAFEDLKSKGLIPADA----TFAG-HSLGEYAALAS- 1772
Query: 154 DLLRIADKFTQHNFQEVMESEEFLILPVAQLVDIISSDELNVRSEEQVFNAIMSWLKYNV 213
+AD ++ + LV++ + R
Sbjct: 1773 ----LAD-----------------VMSIESLVEV-----VFYRGM----------TMQVA 1796
Query: 214 SERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVRSDEACRDLVDEAKNYLLLPQERPLM 273
R + + + ++P G V + S EA + +V+
Sbjct: 1797 VPRDELGR---SNYGMIAINP----GRVAASF---SQEALQYVVERV------------- 1833
Query: 274 QGPRTRPRKPSRRGEVLFAV----GGW---CSGDAISSVER 307
G RT G ++ V +GD + +++
Sbjct: 1834 -GKRT--------GWLVEIVNYNVENQQYVAAGD-LRALDT 1864
Score = 32.3 bits (73), Expect = 0.38
Identities = 51/275 (18%), Positives = 77/275 (28%), Gaps = 97/275 (35%)
Query: 242 GSDLLVRSDEACRDLVDEAKNYLLLPQERPLMQGPRTRPRKPSRRGEVLFAVGGWCSGDA 301
G DL S A +D+ + A N+ ++ P + + F GG G
Sbjct: 1632 GMDLYKTSKAA-QDVWNRADNHFKDTYGFSILDIVINNPVNLT----IHF--GGE-KGKR 1683
Query: 302 ISSVERY---------DPQSSDWKIVAPMSKRRCG----------------------VGV 330
I E Y D + KI +++ +
Sbjct: 1684 IR--ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 331 AVLNDL--------LYAVGGHDGQS---Y---------LNSIE------RYDPQTNQWSC 364
A DL GH S Y + SIE Y T Q
Sbjct: 1742 AAFEDLKSKGLIPADATFAGH---SLGEYAALASLADVM-SIESLVEVVFYRGMTMQ--V 1795
Query: 365 DVAPTTSCRTSVG-VAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGV 423
V R++ G +A+ G + A Q+ +Q + VE RV T + +
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYV--VE----------RVGKRTGWLVEI 1843
Query: 424 A---VAVLGGFLYAIGGSDGQSPLNTVERFDPKLN 455
V Y G L ++ LN
Sbjct: 1844 VNYNVE---NQQYVAAGD-----LRALDTVTNVLN 1870
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 2e-06
Identities = 50/337 (14%), Positives = 96/337 (28%), Gaps = 88/337 (26%)
Query: 150 HSCRDLLRI-ADKFTQHNFQEVMESEEFL--ILPVAQLVDIISSDELNVRSEEQVFNAIM 206
+ +D+L + D F NF + + ++ IL ++ II S + +
Sbjct: 16 YQYKDILSVFEDAFVD-NF-DCKDVQDMPKSILSKEEIDHIIMSKD----AVSGTLRLFW 69
Query: 207 SWLKYNVSERRQHLAQVLQHVRLPLLSPKFLVGTVGSD---LLVRSDEACRDLVDEAKNY 263
+ L +++Q KF+ + + L+ R + Y
Sbjct: 70 TLLSKQ--------EEMVQ---------KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 264 L-----LLPQERPLMQGPRTRPR------------KPSRRGEVLFAVGG----WCSGDAI 302
+ L + + +R + +P++ ++ V G W + D
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK-NVLIDGVLGSGKTWVALDVC 171
Query: 303 SS--VERYDPQSSDWKIVAPMSKRRCGVGVAV---LNDLLYAVGGHDGQSYLNSIERYDP 357
S V+ W ++ + C V L LLY + DP
Sbjct: 172 LSYKVQCKMDFKIFW-----LNLKNCNSPETVLEMLQKLLY---------------QIDP 211
Query: 358 QTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQ------DGVQCLNHVERYDPKENKWS 411
D + R A L L + + VQ ++
Sbjct: 212 NWTS-RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS----C 266
Query: 412 RVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVE 448
++ +TTR V + I L E
Sbjct: 267 KIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Score = 46.4 bits (109), Expect = 2e-05
Identities = 39/302 (12%), Positives = 86/302 (28%), Gaps = 87/302 (28%)
Query: 2 GLADRPASPACLTHTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSP 61
+ D S A TH S H + L+ L L+ + + + +P
Sbjct: 276 QVTDF-LSAATTTHISLDHHSMTLTPDEVK----SLLLKYLDCRPQDL---PREVLTTNP 327
Query: 62 YFRAMFTGELAESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTL---------- 111
++ + + + ++ + +IE +E + + +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV---LEPAEYRKMFDRLSVFPPS 384
Query: 112 --LPAACLLQLV-------EIQDICCEFLKRQL---DP-SNCLGIRAFADTHSCRDLLR- 157
+P LL L+ ++ + + K L P + + I S L+
Sbjct: 385 AHIPTI-LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI------PSIYLELKV 437
Query: 158 -IADKFTQHNFQEVMESEEFLILPVAQLVD---IISSDELNVRSEEQVFNAIMSWLKYNV 213
+ +++ H +VD I + + + + S + +
Sbjct: 438 KLENEYALHR----------------SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-- 479
Query: 214 SERRQHLAQVLQHVRLPLLSPKFLVGTVGSDL------LVRSDEACR------DLVDEAK 261
HL + R+ L FL D + A + + + K
Sbjct: 480 -----HLKNIEHPERMTLFRMVFL------DFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 262 NY 263
Y
Sbjct: 529 FY 530
Score = 44.5 bits (104), Expect = 7e-05
Identities = 53/323 (16%), Positives = 95/323 (29%), Gaps = 106/323 (32%)
Query: 18 DKHPRVVLSEVSALRRH-RELCD---VVLN--VGARKIFAHRVVLSACSPY-FRAMFTGE 70
K+ L LR+ EL V+++ +G+ K V L C Y + +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK---TWVALDVCLSYKVQCKMDFK 183
Query: 71 -----LAESRQAEVTIRDIDDVAMDNLIEFCYT-SHITVEESNVQTLLPAACLLQLVEIQ 124
L + + ++ L + Y S+ + + L++ IQ
Sbjct: 184 IFWLNLKN--------CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK----LRIHSIQ 231
Query: 125 DICCEFLKRQLDPSNCLGI----------RAFADTHSCRDLL--R---IADKFTQHNFQE 169
LK + NCL + AF SC+ LL R + D +
Sbjct: 232 AELRRLLKSKPYE-NCLLVLLNVQNAKAWNAF--NLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 170 VM-----------ESEEFLI---------LPVA------QLVDIIS---SDELNVRSEEQ 200
+ E + L+ LP + + II+ D L +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA-TWDN- 346
Query: 201 VFNAIMSWLKYNVSERRQHLAQVLQHVRLPLLSPK-----------FLVGT-VGSDLLVR 248
W N + L +++ L +L P F + + LL
Sbjct: 347 -------WKHVNCDK----LTTIIE-SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 249 -----SDEACRDLVDEAKNYLLL 266
+V++ Y L+
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLV 417
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane
protein folding, negative, BAMA, protein binding; 1.65A
{Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A
2yh3_A
Length = 376
Score = 39.0 bits (91), Expect = 0.003
Identities = 43/213 (20%), Positives = 74/213 (34%), Gaps = 40/213 (18%)
Query: 292 AVGGWCSGD----AISSVERYDPQSS---DWK--IVAPMSKRRCGVGVAVLNDLLYAVGG 342
A+G + + +S + + Q + W + + + + A+ ++++Y
Sbjct: 2 AMGSLFNSEEDVVKMSPLPTVENQFTPTTAWSTSVGSGIGNFYSNLHPALADNVVY-AAD 60
Query: 343 HDGQSYLNSIERYDPQTNQ--WSCDVAPTTSCRT------SVGVAVLDGFLYAVGGQDGV 394
G ++ + + WS +A + S GV V G +Y + V
Sbjct: 61 RAGL-----VKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQV 115
Query: 395 QCLNHVERYDPKENKWS-------RVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTV 447
LN D W P+ + L V + G L A+ +DG TV
Sbjct: 116 YALN---TSDGTV-AWQTKVAGEALSRPVVSDGL-VLIHTSNGQLQALNEADGA-VKWTV 169
Query: 448 ERFDPKLNRWTAMAPMSTRRKHLGCAVFVGDNG 480
P L+ AP + G AV GDNG
Sbjct: 170 NLDMPSLSLRGESAPTTAF----GAAVVGGDNG 198
Score = 34.0 bits (78), Expect = 0.088
Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 17/110 (15%)
Query: 331 AVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGG 390
V+N +++A+ L +++ Q W ++ + V +Y V
Sbjct: 236 VVVNGVVFALAY---NGNLTALDLRSGQIM-WKRELG------SVNDFIVDGNRIYLVDQ 285
Query: 391 QDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDG 440
D V L W++ RL + + G L +G S+G
Sbjct: 286 NDRVMALT---IDGGVT-LWTQSDL--LHRLLTSPVLYNGNLV-VGDSEG 328
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer,
oxidoreductase, calcium- binding, methanol utilization,
PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP:
b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Length = 599
Score = 34.2 bits (78), Expect = 0.10
Identities = 26/135 (19%), Positives = 44/135 (32%), Gaps = 26/135 (19%)
Query: 332 VLNDLLYAVGGHDGQSY-LNSIE------RYDPQTN-----QWSCDVA--------PTTS 371
V++ +Y ++ L + + P+ N CD+
Sbjct: 60 VVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGK 119
Query: 372 CRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRL---GVAVAVL 428
+ LDG + A+ + G VE D K +AP + G + A L
Sbjct: 120 TPALILKTQLDGNVAALNAETGETVWK-VENSDIKVGSTLTIAPYVVKDKVIIGSSGAEL 178
Query: 429 G--GFLYAIGGSDGQ 441
G G+L A G+
Sbjct: 179 GVRGYLTAYDVKTGE 193
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant;
triangular beta-sheet cluster, signaling protein; 3.10A
{Homo sapiens}
Length = 369
Score = 33.5 bits (76), Expect = 0.13
Identities = 20/119 (16%), Positives = 38/119 (31%), Gaps = 17/119 (14%)
Query: 330 VAVLNDLLYAVGGHDGQSYLNSIERYDPQT--NQWSCDVAPTTSCRTSVG-----VAVLD 382
V + LL+ V DG + +T +W+ P T V D
Sbjct: 5 VTLPETLLF-VSTLDGSLH-----AVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPND 58
Query: 383 GFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQ 441
G LY +G ++ + + + + +P + + + Y I G+
Sbjct: 59 GSLYTLGSKNNEG----LTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGE 113
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.41
Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 7/27 (25%)
Query: 350 NSIERYDPQTNQWSCDVAPTTSCRTSV 376
S++ Y D AP + + ++
Sbjct: 27 ASLKLYAD-------DSAPALAIKATM 46
Score = 29.1 bits (64), Expect = 2.0
Identities = 5/18 (27%), Positives = 8/18 (44%), Gaps = 6/18 (33%)
Query: 303 SSVERYDPQSSDWKIVAP 320
+S++ Y S AP
Sbjct: 27 ASLKLYADDS------AP 38
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit;
oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus
denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Length = 337
Score = 31.3 bits (70), Expect = 0.60
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 9/114 (7%)
Query: 327 GVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQ-WSCDVAPTTSCRTSVGVAVLDGFL 385
GV + D +Y + D +T + +V S V
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255
Query: 386 YAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSD 439
+ N +E +D ++N + P+ V V+ G ++ G
Sbjct: 256 FGA--------YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG 301
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer,
oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas
putida} SCOP: a.3.1.6 b.70.1.1
Length = 668
Score = 30.7 bits (69), Expect = 1.3
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 19/103 (18%)
Query: 354 RYDPQTNQWSCDVAPTTSCR-TSVGVAV---------LDGFLYAVGGQDGVQCLNHVERY 403
RYDP+ + A T+ C + GVA+ LDG L A+ + G +
Sbjct: 91 RYDPEVAK---VKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAI-WSQQTT 146
Query: 404 DPKENKWSRVAPMTTRRL---GVAVAVLG--GFLYAIGGSDGQ 441
DP + AP + G A G GF+ A G+
Sbjct: 147 DPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGK 189
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade
beta-propeller., struct genomics, PSI-2, protein
structure initiative; 2.00A {Methanococcus maripaludis}
Length = 330
Score = 30.4 bits (69), Expect = 1.4
Identities = 18/113 (15%), Positives = 29/113 (25%), Gaps = 19/113 (16%)
Query: 329 GVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQ-WSCDVAPTTSCRTSVGVAVLDGFLYA 387
++ D G + +P + W+ + DG +Y
Sbjct: 181 AASIGKDGTIYFGSDKVYAI-------NPDGTEKWN---FYAGYWTVTRPAISEDGTIYV 230
Query: 388 VGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDG 440
+ +N D E KW R V +Y G DG
Sbjct: 231 TSLDGHLYAINP----DGTE-KWRF--KTGKRIESSPVIGNTDTIY-FGSYDG 275
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 29.0 bits (65), Expect = 1.7
Identities = 10/54 (18%), Positives = 21/54 (38%)
Query: 40 VVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAEVTIRDIDDVAMDNLI 93
+ LNV +I SP + F ++ R+ E+ + + D+ +
Sbjct: 42 IALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFV 95
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A
{Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Length = 349
Score = 29.7 bits (66), Expect = 2.1
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 365 DVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVA 424
+ A T + + D LN + +YD K+ K + A + VA
Sbjct: 249 EFADLTELYFTGLRSPKDPNQIYGV-------LNRLAKYDLKQRKLIKAANLDHTYYCVA 301
Query: 425 VAVLGGFLYAIGGSD 439
G LY G +
Sbjct: 302 FDKKGDKLYLGGTFN 316
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold,
cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A
{Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Length = 677
Score = 30.0 bits (67), Expect = 2.1
Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 12/100 (12%)
Query: 354 RYDPQTN-----QWSCDVA--PTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPK 406
YDPQ + + CDV + V V DG L A+ G + + K
Sbjct: 102 TYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQK 161
Query: 407 ENKWSRVAPMTTRRL---GVAVAVLG--GFLYAIGGSDGQ 441
+ AP + G A G G++ A G+
Sbjct: 162 GSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGE 201
>2a9g_A Arginine deiminase; arginine degradation pathway, catalyti
mechanism, hydrolase; HET: ARG; 2.30A {Pseudomonas
aeruginosa} SCOP: d.126.1.4 PDB: 1rxx_A 2abr_A* 2aci_A
2aaf_A*
Length = 418
Score = 29.0 bits (64), Expect = 4.1
Identities = 28/174 (16%), Positives = 55/174 (31%), Gaps = 25/174 (14%)
Query: 133 RQLDPSNCLGIRAFADTHSCRDLLRIADKFTQH-NFQEVMESEEFLILPVAQLVDIISSD 191
++L PSNC D D++ + H +F M + V ++ ++++
Sbjct: 30 QRLTPSNC-------DELLFDDVIWVNQAKRDHFDFVTKMRERG---IDVLEMHNLLTET 79
Query: 192 ELNVRSEEQVFNAIMSWLKYNVSERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVRSDE 251
N + + + + ++ + L L+ + L+ + G DL
Sbjct: 80 IQNPEALKWILDRKITADSVGL-GLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGA 138
Query: 252 ACRDLVDEA-KNYLLLPQERPLMQGPR------------TRPRKPSRRGEVLFA 292
+ E + L P Q R P+RR E L
Sbjct: 139 NILKMYREYLGHSSFLLPPLPNTQFTRDTTCWIYGGVTLNPMYWPARRQETLLT 192
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein,
bacillu structural genomics, PSI, protein structure
initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9
a.121.1.1
Length = 192
Score = 28.4 bits (64), Expect = 4.2
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 273 MQGPRTRPRKPSRRGEVLFAV 293
MQ R RPR + +L A
Sbjct: 1 MQSKRGRPRNIETQKAILSAS 21
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.414
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,528,961
Number of extensions: 461858
Number of successful extensions: 1302
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1088
Number of HSP's successfully gapped: 89
Length of query: 482
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 385
Effective length of database: 3,993,456
Effective search space: 1537480560
Effective search space used: 1537480560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)