RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11333
(482 letters)
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 105 bits (263), Expect = 7e-28
Identities = 36/114 (31%), Positives = 60/114 (52%)
Query: 19 KHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELAESRQAE 78
+H VL ++ LR L DVV+ V + AH+ VL ACS F ++FT +L +
Sbjct: 7 RHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVI 66
Query: 79 VTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLK 132
+I+ + L++F YTS + + E N+ ++ A LQ+ + D C +F+K
Sbjct: 67 NLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIK 120
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 100 bits (251), Expect = 3e-26
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
Query: 13 LTHTSDKHPRVVLSEVSALRRHRELCDVVLNVGARKIFAHRVVLSACSPYFRAMFTGELA 72
+ + HP +L + + +R LCDVV+ V +++ AHR VL+ S F +F
Sbjct: 4 IQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFH---- 59
Query: 73 ESRQAEVTIRDIDDVAMDNLIEFCYTSHITVEESNVQTLLPAACLLQLVEIQDICCEFLK 132
T+ + ++E+ YT+ + + ++ LL AA +L++ +++ C + L+
Sbjct: 60 -RNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLE 118
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1,
KEAP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 104 bits (260), Expect = 6e-26
Identities = 86/184 (46%), Positives = 112/184 (60%), Gaps = 1/184 (0%)
Query: 291 FAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLN 350
+AVGG +SVERY+P+ +W +VAPM RR GVGVAVLN LLYAVGG DG + LN
Sbjct: 105 YAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLN 164
Query: 351 SIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKW 410
S E Y P+ N+W A T GV VL +YA GG DG LN VERYD + W
Sbjct: 165 SAECYYPERNEWRMITAMNTIRSG-AGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW 223
Query: 411 SRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRKHL 470
+ VAPM RR + + V G +Y +GG DG + L++VE +DP + W+ + M++ R +
Sbjct: 224 TFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGV 283
Query: 471 GCAV 474
G AV
Sbjct: 284 GVAV 287
Score = 86.5 bits (212), Expect = 2e-19
Identities = 42/91 (46%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 290 LFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYL 349
++A GG+ D ++SVERYD ++ W VAPM RR +G+ V +Y +GG+DG ++L
Sbjct: 198 IYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFL 257
Query: 350 NSIERYDPQTNQWSCDVAPTTSCRTSVGVAV 380
+S+E YDP T+ WS +V TS R+ VGVAV
Sbjct: 258 DSVECYDPDTDTWS-EVTRMTSGRSGVGVAV 287
Score = 85.0 bits (208), Expect = 6e-19
Identities = 72/192 (37%), Positives = 104/192 (54%), Gaps = 4/192 (2%)
Query: 285 RRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHD 344
+ G +++ GG+ ++S +E Y+P + W +A + R G+ V+ LLYAVGG +
Sbjct: 2 KVGRLIYTAGGY-FRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRN 60
Query: 345 GQSYLNSIERYDPQTNQ---WSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVE 401
N+ N AP + R +GV V+DG +YAVGG G N VE
Sbjct: 61 NSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVE 120
Query: 402 RYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMA 461
RY+P+ ++W VAPM TRR+GV VAVL LYA+GG DG + LN+ E + P+ N W +
Sbjct: 121 RYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT 180
Query: 462 PMSTRRKHLGCA 473
M+T R G
Sbjct: 181 AMNTIRSGAGVC 192
Score = 58.0 bits (138), Expect = 6e-10
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 428 LGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAV 474
+G +Y GG QS L+ +E ++P W +A + R L V
Sbjct: 3 VGRLIYTAGGYFRQS-LSYLEAYNPSNGTWLRLADLQVPRSGLAGCV 48
Score = 54.1 bits (128), Expect = 1e-08
Identities = 86/195 (44%), Positives = 115/195 (58%), Gaps = 5/195 (2%)
Query: 287 GEVLFAVGGWCSGD----AISSVERYDPQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGG 342
G +L+AVGG + S+++ Y+P ++ W APMS R +GV V++ +YAVGG
Sbjct: 50 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG 109
Query: 343 HDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVER 402
G + NS+ERY+P+ ++W AP + R VGVAVL+ LYAVGG DG LN E
Sbjct: 110 SHGCIHHNSVERYEPERDEWHLV-APMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAEC 168
Query: 403 YDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAP 462
Y P+ N+W + M T R G V VL +YA GG DGQ LN+VER+D + WT +AP
Sbjct: 169 YYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 228
Query: 463 MSTRRKHLGCAVFVG 477
M RR LG V G
Sbjct: 229 MKHRRSALGITVHQG 243
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain
{Fungi (Fusarium sp.) [TaxId: 29916]}
Length = 387
Score = 89.9 bits (221), Expect = 4e-20
Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 28/185 (15%)
Query: 296 WCSGDAISSVERYDPQSSDWKIVAPMSKRRCG-----VGVAVLNDLL-----YAVGGHDG 345
+ +G + + Y S D K R G AV+ D + G D
Sbjct: 196 FQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY 255
Query: 346 QSYLNSIERYDPQTNQWSCDVAPTTS-------CRTSVGVAVLDGFLYAVGGQ------D 392
Q + + + + V + DG + GGQ +
Sbjct: 256 QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE 315
Query: 393 GVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVL--GGFLYAIGG---SDGQSPLNTV 447
+ E Y P+++ + + P + R+ ++++L G ++ GG D +
Sbjct: 316 DSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDA 375
Query: 448 ERFDP 452
+ F P
Sbjct: 376 QIFTP 380
Score = 82.6 bits (202), Expect = 9e-18
Identities = 34/224 (15%), Positives = 62/224 (27%), Gaps = 32/224 (14%)
Query: 287 GEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSK----RRCGVGVAVLNDLLYAVGG 342
G V G W G + E Y P S W + G+ ++ + G
Sbjct: 131 GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGW 190
Query: 343 HDGQSY-----LNSIERYDPQTNQWS--------CDVAPTTSCRTSVGVAVLDGFLYAV- 388
G + Y + VAP C +V + G +
Sbjct: 191 KKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFG 250
Query: 389 -------GGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLG-VAVAVLGGFLYAIGGS-- 438
+ + N + R +V + G + GG
Sbjct: 251 GSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRR 310
Query: 439 ----DGQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCAVFVGD 478
+ +P+ T E + P+ + + P S R + ++ + D
Sbjct: 311 GIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPD 354
Score = 80.2 bits (196), Expect = 6e-17
Identities = 25/174 (14%), Positives = 42/174 (24%), Gaps = 14/174 (8%)
Query: 310 PQSSDWKIVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLN------SIERYDPQTNQWS 363
P W + + + + + ++ +DP T S
Sbjct: 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65
Query: 364 -CDVAPTTSCRTSVGVAVL-DGFLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTT--R 419
V T G+++ +G + GG D YD + W M
Sbjct: 66 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVARG 121
Query: 420 RLGVAVAVLGGFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRRKHLGCA 473
A G G G E + P WT++
Sbjct: 122 YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK 175
Score = 71.8 bits (174), Expect = 4e-14
Identities = 23/202 (11%), Positives = 43/202 (21%), Gaps = 23/202 (11%)
Query: 290 LFAVGGWC------SGDAISSVERYDPQSSDWKIVAPMSKRR---CGVGVAVLNDLLYAV 340
+ + S I+ +DP + + C N +
Sbjct: 33 VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVT 92
Query: 341 GGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDG-FLYAVGGQDGVQCLNH 399
GG+D YD ++ W + + DG G G +
Sbjct: 93 GGNDA----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKN 148
Query: 400 VERYDPKENKWSRVAPM----TTRRLGVAVAVLGGFLYAIGGSDGQSP-----LNTVERF 450
E Y P W+ + + + G G +
Sbjct: 149 GEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYY 208
Query: 451 DPKLNRWTAMAPMSTRRKHLGC 472
+ + R
Sbjct: 209 TSGSGDVKSAGKRQSNRGVAPD 230
Score = 69.1 bits (167), Expect = 2e-13
Identities = 17/128 (13%), Positives = 32/128 (25%), Gaps = 14/128 (10%)
Query: 357 PQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQ------CLNHVERYDPKENKW 410
P +W + + G + + +DP
Sbjct: 6 PGLGRWG-PTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV 64
Query: 411 SRVAPMTTRR--LGVAVAVLG-GFLYAIGGSDGQSPLNTVERFDPKLNRWTAMAPMSTRR 467
S T+ +++ G G + GG+D +D + W M R
Sbjct: 65 SDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVAR 120
Query: 468 KHLGCAVF 475
+ A
Sbjct: 121 GYQSSATM 128
Score = 67.9 bits (164), Expect = 6e-13
Identities = 9/82 (10%), Positives = 19/82 (23%), Gaps = 6/82 (7%)
Query: 405 PKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSD------GQSPLNTVERFDPKLNRWT 458
P +W + A+ G + + +DP +
Sbjct: 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65
Query: 459 AMAPMSTRRKHLGCAVFVGDNG 480
T+ + + NG
Sbjct: 66 DRTVTVTKHDMFCPGISMDGNG 87
>d1ca1a1 a.124.1.1 (A:1-249) Alpha-toxin, N-terminal domain
{Clostridium perfringens, different strains [TaxId:
1502]}
Length = 249
Score = 29.6 bits (66), Expect = 0.80
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 402 RYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIG--GSDGQSP 443
+ + W L + G++Y S+G P
Sbjct: 206 SHASMSHSWDDWDYAAKVTLANSQKGTAGYIYRFLHDVSEGNDP 249
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 29.1 bits (63), Expect = 1.3
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 10/89 (11%)
Query: 384 FLYAVGGQDGVQCLNHVERYDPKENKWSRVAPMTTRRLGVAVAVLGGFLYAIGGSDGQSP 443
F Y + +++ D NK + P+ + +G ++ G +Y
Sbjct: 3 FAYIANSES-----DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHS---- 53
Query: 444 LNTVERFDPKLNRWTAMAPMSTRRKHLGC 472
N V D N A P + + +
Sbjct: 54 -NDVSIIDTATNNVIATVPAGSSPQGVAV 81
>d2coba1 a.4.1.15 (A:8-70) Ligand-dependent corepressor (LCoR)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 26.5 bits (58), Expect = 1.6
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 183 QLVDIISSDELNVRSEEQVFNAIMSWLKYNVSERRQHL 220
+ + ++ S +++V + ++ S L+Y V ER L
Sbjct: 14 EAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTL 51
>d1ddba_ f.1.4.1 (A:) Proapoptotic molecule Bid {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 195
Score = 27.9 bits (62), Expect = 1.9
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 172 ESEEFLILPVA-QLVDIISSDELNVRSEEQVFNAIMSWLKYNVS----ERRQHLAQVLQH 226
ES+E +I +A L I DE++ + + + + N S ++R LA+ L
Sbjct: 77 ESQEEIIHNIARHLAQI--GDEMDHNIQPTLVRQLAAQFM-NGSLSEEDKRNCLAKALDE 133
Query: 227 V 227
V
Sbjct: 134 V 134
>d1uv7a_ d.67.4.1 (A:) General secretion pathway protein M, EpsM
{Vibrio cholerae [TaxId: 666]}
Length = 80
Score = 25.8 bits (57), Expect = 3.3
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 190 SDELNVRSEEQVFNAIMSWL 209
+ + V + F+ ++SW+
Sbjct: 25 GEMMQVWIQPLPFSQLVSWI 44
>d1yu0a2 d.169.1.8 (A:171-380) Major tropism determinant (Mtd),
C-terminal domain {Bordetella phage bpp-1 [TaxId:
194699]}
Length = 210
Score = 27.1 bits (59), Expect = 3.6
Identities = 12/89 (13%), Positives = 22/89 (24%), Gaps = 8/89 (8%)
Query: 279 RPRKPSRRGEVLFAVGGWCSGDAISSVERYDPQSSDWKIVAPMSKRRCGVGV--AVLNDL 336
RP RG L A W + + K ++ D
Sbjct: 3 RPAALDPRGMTLVAGAFWADIYLLGVNH-LTDGT--SKYNVTIADGSASPKKSTKFGGDG 59
Query: 337 LYAVGG---HDGQSYLNSIERYDPQTNQW 362
A ++ + + P N++
Sbjct: 60 SAAYSDGAWYNFAEVMTHHGKRLPNYNEF 88
>d2bida_ f.1.4.1 (A:) Proapoptotic molecule Bid {Human (Homo
sapiens) [TaxId: 9606]}
Length = 197
Score = 26.8 bits (59), Expect = 4.6
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 172 ESEEFLILPVA-QLVDIISSDELNVRSEEQVFNAIMSW-LKYNVSE--RRQHLAQVLQHV 227
ES+E +I +A L + D ++ + N + + SE R + LA L+ +
Sbjct: 79 ESQEDIIRNIARHLAQV--GDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLATALEQL 136
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate
uridylyltransferase {Escherichia coli [TaxId: 562]}
Length = 176
Score = 26.6 bits (58), Expect = 5.2
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 449 RFDPKLNRWTAMAPMSTRRKHLG 471
R++P +W ++P +R G
Sbjct: 12 RYNPLTGQWILVSPHRAKRPWQG 34
>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 105
Score = 25.6 bits (56), Expect = 7.1
Identities = 12/90 (13%), Positives = 21/90 (23%), Gaps = 11/90 (12%)
Query: 351 SIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYD------ 404
+ RY+P+ + ++LD Y R
Sbjct: 9 EVVRYNPEVDTAPHSA--FYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCG 66
Query: 405 ---PKENKWSRVAPMTTRRLGVAVAVLGGF 431
K + + G+ V L F
Sbjct: 67 MMVNNVPKLACKTFLRDYTDGMKVEALANF 96
>d1ihma_ b.121.4.3 (A:) Calicivirus capsid protein {Norwalk virus
[TaxId: 11983]}
Length = 492
Score = 26.7 bits (59), Expect = 7.6
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 413 VAPMTTRRLGVAVAVLGGFLYAI--GGSDG--QSPLNTVERFDPKLNRWTAMAPMST 465
V P T R LG A GFL + G S G Q P+N V F ++R+ + P+ T
Sbjct: 434 VDPDTGRNLGEFKAYPDGFLTCVPNGASSGPQQLPINGVFVFVSWVSRFYQLKPVGT 490
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.414
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,798,384
Number of extensions: 83718
Number of successful extensions: 265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 26
Length of query: 482
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 393
Effective length of database: 1,185,626
Effective search space: 465951018
Effective search space used: 465951018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)