Query psy11336
Match_columns 194
No_of_seqs 69 out of 71
Neff 3.0
Searched_HMMs 46136
Date Fri Aug 16 15:46:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11336.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11336hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3107|consensus 100.0 9.3E-69 2E-73 490.3 10.7 163 26-193 169-331 (468)
2 TIGR01658 EYA-cons_domain eyes 100.0 1.4E-59 3E-64 410.6 9.2 115 54-186 1-117 (274)
3 PLN02779 haloacid dehalogenase 75.9 0.87 1.9E-05 39.4 0.0 28 56-83 41-72 (286)
4 COG0546 Gph Predicted phosphat 72.4 2.1 4.6E-05 35.2 1.4 48 55-102 4-58 (220)
5 PRK13707 conjugal transfer pil 71.1 2.3 5E-05 32.9 1.3 27 53-79 17-43 (101)
6 TIGR02250 FCP1_euk FCP1-like p 70.9 2.2 4.7E-05 34.4 1.2 19 54-72 5-23 (156)
7 TIGR01681 HAD-SF-IIIC HAD-supe 67.7 2.5 5.4E-05 32.3 0.9 12 56-67 1-12 (128)
8 PF07178 TraL: TraL protein; 65.5 3 6.6E-05 31.3 0.9 26 53-78 11-36 (95)
9 TIGR02137 HSK-PSP phosphoserin 64.4 3.5 7.6E-05 34.3 1.2 27 55-84 1-27 (203)
10 PHA02597 30.2 hypothetical pro 63.8 7.4 0.00016 30.7 2.9 29 56-85 3-31 (197)
11 TIGR01491 HAD-SF-IB-PSPlk HAD- 62.5 3.8 8.2E-05 31.8 1.0 16 55-70 4-19 (201)
12 TIGR01686 FkbH FkbH-like domai 60.3 4.4 9.5E-05 35.5 1.1 14 54-67 2-15 (320)
13 PRK10725 fructose-1-P/6-phosph 56.1 5.3 0.00011 30.9 0.8 29 56-84 6-37 (188)
14 PF03031 NIF: NLI interacting 56.0 4.4 9.6E-05 31.2 0.4 14 57-70 2-15 (159)
15 PF05152 DUF705: Protein of un 55.4 5.8 0.00013 36.6 1.1 15 53-67 120-134 (297)
16 TIGR02253 CTE7 HAD superfamily 55.0 6 0.00013 31.4 1.0 20 56-75 3-22 (221)
17 TIGR01549 HAD-SF-IA-v1 haloaci 51.7 5.8 0.00012 29.8 0.4 31 57-87 1-34 (154)
18 TIGR02009 PGMB-YQAB-SF beta-ph 51.6 6.7 0.00015 30.1 0.8 30 56-85 2-34 (185)
19 PRK13288 pyrophosphatase PpaX; 51.0 7.2 0.00016 31.2 0.9 20 56-75 4-23 (214)
20 PRK14988 GMP/IMP nucleotidase; 50.1 7.3 0.00016 32.2 0.8 14 55-68 10-23 (224)
21 TIGR01993 Pyr-5-nucltdase pyri 49.7 15 0.00033 28.6 2.5 13 57-69 2-14 (184)
22 TIGR02762 TraL_TIGR type IV co 48.8 10 0.00023 28.7 1.4 26 53-78 11-36 (95)
23 TIGR01422 phosphonatase phosph 48.3 8.2 0.00018 31.9 0.8 15 56-70 3-17 (253)
24 PRK11590 hypothetical protein; 48.0 11 0.00025 30.7 1.6 29 55-84 6-37 (211)
25 PF15366 DUF4597: Domain of un 47.1 12 0.00027 27.4 1.5 32 29-65 19-50 (62)
26 PF08360 TetR_C_5: QacR-like p 46.9 23 0.0005 28.1 3.1 40 61-100 87-126 (131)
27 PLN02575 haloacid dehalogenase 46.2 14 0.0003 34.6 2.0 48 56-103 132-187 (381)
28 PRK10563 6-phosphogluconate ph 45.7 8.2 0.00018 30.9 0.4 29 56-84 5-36 (221)
29 PLN02954 phosphoserine phospha 42.0 29 0.00063 27.7 3.1 18 55-72 12-29 (224)
30 TIGR01493 HAD-SF-IA-v2 Haloaci 41.1 11 0.00023 28.9 0.5 21 57-77 1-21 (175)
31 TIGR01454 AHBA_synth_RP 3-amin 39.9 11 0.00024 29.9 0.3 15 58-72 1-15 (205)
32 TIGR02254 YjjG/YfnB HAD superf 39.8 12 0.00026 29.5 0.6 30 56-85 2-34 (224)
33 PRK11587 putative phosphatase; 39.7 22 0.00047 28.8 2.1 30 56-85 4-36 (218)
34 PF04068 RLI: Possible Fer4-li 39.6 17 0.00037 23.4 1.1 10 55-64 1-10 (35)
35 TIGR01990 bPGM beta-phosphoglu 38.7 12 0.00026 28.6 0.4 28 58-85 2-32 (185)
36 PF12710 HAD: haloacid dehalog 37.9 15 0.00034 28.0 0.9 14 58-71 1-14 (192)
37 TIGR02252 DREG-2 REG-2-like, H 37.5 14 0.0003 29.1 0.6 29 56-84 1-32 (203)
38 TIGR01428 HAD_type_II 2-haloal 35.8 17 0.00038 28.6 0.9 26 56-82 2-27 (198)
39 PRK13222 phosphoglycolate phos 35.7 26 0.00057 27.7 1.9 29 56-84 7-38 (226)
40 TIGR01548 HAD-SF-IA-hyp1 haloa 35.5 13 0.00029 29.4 0.2 11 57-67 2-12 (197)
41 PRK09449 dUMP phosphatase; Pro 35.4 19 0.00041 28.8 1.0 12 56-67 4-15 (224)
42 PRK06698 bifunctional 5'-methy 35.3 13 0.00028 34.1 0.1 22 45-67 232-253 (459)
43 TIGR01509 HAD-SF-IA-v3 haloaci 34.9 14 0.0003 28.0 0.2 16 57-72 1-16 (183)
44 PRK13226 phosphoglycolate phos 34.2 18 0.0004 29.7 0.8 45 56-100 13-64 (229)
45 TIGR02251 HIF-SF_euk Dullard-l 33.7 16 0.00034 29.3 0.3 13 57-69 3-15 (162)
46 TIGR01488 HAD-SF-IB Haloacid D 33.7 16 0.00036 27.7 0.4 15 57-71 1-15 (177)
47 PRK13478 phosphonoacetaldehyde 33.6 19 0.0004 30.3 0.7 16 56-71 5-20 (267)
48 PRK10826 2-deoxyglucose-6-phos 33.4 25 0.00055 28.3 1.5 30 56-85 8-40 (222)
49 PRK10748 flavin mononucleotide 33.2 17 0.00038 30.1 0.5 20 56-75 11-30 (238)
50 TIGR03351 PhnX-like phosphonat 32.3 20 0.00042 28.7 0.7 20 56-75 2-21 (220)
51 TIGR01449 PGP_bact 2-phosphogl 32.3 17 0.00037 28.5 0.3 11 58-68 1-11 (213)
52 TIGR00338 serB phosphoserine p 32.2 20 0.00044 28.5 0.7 28 55-84 14-41 (219)
53 TIGR01489 DKMTPPase-SF 2,3-dik 32.1 22 0.00047 27.1 0.9 17 56-72 2-18 (188)
54 PF06941 NT5C: 5' nucleotidase 31.6 30 0.00064 27.8 1.6 26 59-84 6-31 (191)
55 PRK13223 phosphoglycolate phos 30.0 24 0.00053 30.2 0.9 32 54-85 12-46 (272)
56 cd01427 HAD_like Haloacid deha 29.5 19 0.00042 24.8 0.2 18 57-74 1-18 (139)
57 TIGR01490 HAD-SF-IB-hyp1 HAD-s 28.7 19 0.00042 28.2 0.1 14 58-71 2-15 (202)
58 PLN02770 haloacid dehalogenase 28.5 24 0.00051 29.5 0.6 19 56-74 23-41 (248)
59 TIGR01672 AphA HAD superfamily 28.4 26 0.00057 30.4 0.8 16 56-71 64-79 (237)
60 PRK13225 phosphoglycolate phos 26.7 29 0.00062 30.2 0.8 30 55-84 62-94 (273)
61 cd02188 gamma_tubulin Gamma-tu 25.7 84 0.0018 29.6 3.7 63 50-119 55-131 (431)
62 PF03767 Acid_phosphat_B: HAD 25.4 34 0.00073 29.2 1.0 13 55-67 72-84 (229)
63 PLN02940 riboflavin kinase 24.2 56 0.0012 29.8 2.2 32 53-84 9-43 (382)
64 PF13041 PPR_2: PPR repeat fam 24.2 90 0.002 19.6 2.6 29 66-97 3-31 (50)
65 PF13645 YkuD_2: L,D-transpept 23.8 24 0.00053 30.1 -0.2 34 53-86 47-86 (176)
66 COG0637 Predicted phosphatase/ 23.0 37 0.0008 28.3 0.7 29 56-84 3-34 (221)
67 PF15152 Kisspeptin: Kisspepti 22.7 40 0.00086 25.8 0.8 13 130-142 63-75 (78)
68 PRK13582 thrH phosphoserine ph 22.6 44 0.00095 26.3 1.1 12 56-67 2-13 (205)
69 KOG0729|consensus 22.1 94 0.002 29.7 3.2 40 89-128 252-295 (435)
70 PLN03243 haloacid dehalogenase 22.0 41 0.00088 29.0 0.8 47 56-102 25-79 (260)
71 TIGR02247 HAD-1A3-hyp Epoxide 21.8 41 0.00089 26.7 0.8 14 56-69 3-16 (211)
72 KOG4217|consensus 20.4 1.4E+02 0.0031 30.0 4.2 20 57-76 399-420 (605)
73 PF13419 HAD_2: Haloacid dehal 20.1 48 0.001 24.2 0.8 14 58-71 1-14 (176)
74 cd02189 delta_tubulin The tubu 20.0 86 0.0019 29.5 2.6 62 50-118 50-126 (446)
No 1
>KOG3107|consensus
Probab=100.00 E-value=9.3e-69 Score=490.31 Aligned_cols=163 Identities=60% Similarity=1.007 Sum_probs=155.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccccceeEEeecchhhhHHhhhccchhhhhcCCChHHHhHHHHHHHHHHHHhhhh
Q psy11336 26 NASSAGTPTPIIPNPCPSPGSPAGDSRILDRVFIWDLDETIIIFHSLLTGSYATKHGKCPQTVIQLGYKMEEMIFGVADN 105 (194)
Q Consensus 26 ~~~~~~~~~~~~~~~~~s~~s~p~d~~~~eRVFIWDLDETiIIfhSLLtGsyA~~~~KD~~~~v~lG~rmEemIf~laD~ 105 (194)
...|--++++|..++|++++|||+|+ +||||||||||||||||||||+|+||++|+||+..+|++|++|||||||+||+
T Consensus 169 t~~s~k~~~~K~rgkk~~~psp~~ds-~~eRVFiWDlDEtiIifhslL~gsya~~y~kd~~~~v~ig~~mE~mifn~aDt 247 (468)
T KOG3107|consen 169 TDRSLKESKGKGRGKKKTGPSPPGDS-TLERVFIWDLDETIIIFHSLLTGSYATRYGKDPRAAVSIGLMMEEMIFNLADT 247 (468)
T ss_pred cccccccCCCcccccccCCCCCCCCC-cceeEEEeeccchHHHHHHHhhhhhhhhccCCchhhhHHHHHHHHHHHHhhhH
Confidence 35666778899999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCcccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccccccCchhhHHHHHHHHHHHHHHHHh
Q psy11336 106 HFFFNEVEDCDQVHIDDISTDDNGQDLNGYNFSADGFRASVLNVPSGPPGLCVASGVRGGVDWMRKLAFRYRKIKDIYNN 185 (194)
Q Consensus 106 hfFfndlEecDqvhIdDvs~dDnGqDLS~y~F~~Dgf~~p~~~~~~~~~~lc~~~~vrgGVDWMRKLAfRYR~Ike~Yn~ 185 (194)
||||||||||||||||||++||||||||.|+|.+|||+++... + +++|+.++||||||||||||||||++||+||+
T Consensus 248 h~F~ndleecdq~~vDdvs~dDngqdLs~y~f~~d~fsa~~~~--~--~~l~~~~~v~g~vd~mr~laFr~re~~e~~~~ 323 (468)
T KOG3107|consen 248 HLFFNDLEECDQVHVDDVSSDDNGQDLSTYNFVTDGFSAFTAF--S--ANLCLKTGVRGGVDWMRKLAFRYREVKEIYNT 323 (468)
T ss_pred HHHHHHHhhhcccccccccccCCcccccceeeccCCCcCcCcc--c--cccccccccchhhhhhhccchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999997754 2 69999999999999999999999999999999
Q ss_pred cccccccC
Q psy11336 186 YRNSVYLM 193 (194)
Q Consensus 186 yknnv~~~ 193 (194)
||||||+.
T Consensus 324 y~nnv~~l 331 (468)
T KOG3107|consen 324 YKNNVGGL 331 (468)
T ss_pred HHhhhhcc
Confidence 99999974
No 2
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=100.00 E-value=1.4e-59 Score=410.64 Aligned_cols=115 Identities=42% Similarity=0.853 Sum_probs=111.4
Q ss_pred cceeEEeecchhhhHHhhhccchhhhhcC--CChHHHhHHHHHHHHHHHHhhhhccccccccccCcccccccccCCCCCC
Q psy11336 54 LDRVFIWDLDETIIIFHSLLTGSYATKHG--KCPQTVIQLGYKMEEMIFGVADNHFFFNEVEDCDQVHIDDISTDDNGQD 131 (194)
Q Consensus 54 ~eRVFIWDLDETiIIfhSLLtGsyA~~~~--KD~~~~v~lG~rmEemIf~laD~hfFfndlEecDqvhIdDvs~dDnGqD 131 (194)
++||||||||||||||||||||+||++|+ ||++++|+||+|||||||+|||+||||||||||||||||||++||||||
T Consensus 1 ~e~VfvWDlDETlIif~SLL~GsyA~~f~g~KD~~~~v~lG~r~E~lIl~l~D~~fFf~~lEe~dq~~lddv~~~DdG~D 80 (274)
T TIGR01658 1 PENVYVWDMDETLILLHSLLNGSYAESFNGSKDHKRGVEIGRRWEEMILEICDTHFFYEEIEECNEPFLDDVRSYDDGKD 80 (274)
T ss_pred CceeEEEeccchHHHHHHhhcchHHHHcCCCcCcHHHHHHHHHHHHHHHHHHHhhhhhhhHHhcCccchhhhhhcccccC
Confidence 58999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCccccccccCchhhHHHHHHHHHHHHHHHHhc
Q psy11336 132 LNGYNFSADGFRASVLNVPSGPPGLCVASGVRGGVDWMRKLAFRYRKIKDIYNNY 186 (194)
Q Consensus 132 LS~y~F~~Dgf~~p~~~~~~~~~~lc~~~~vrgGVDWMRKLAfRYR~Ike~Yn~y 186 (194)
||+|+|.+|||++|.++ +| +||||||||+|||+|++|
T Consensus 81 Ls~Y~F~~D~f~~p~~~-------~~-----------~rKLAyR~R~I~e~Y~~~ 117 (274)
T TIGR01658 81 LSRYEFKTDGFSTPTDD-------LN-----------KRKLAYRHRAVAEIYEKG 117 (274)
T ss_pred ccccccccccCCCCccc-------hh-----------hhHHHHHHHHHHHHHHhh
Confidence 99999999999999866 44 599999999999999999
No 3
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=75.90 E-value=0.87 Score=39.43 Aligned_cols=28 Identities=11% Similarity=0.212 Sum_probs=19.3
Q ss_pred eeEEeecchhhhHHh-hhccchh---hhhcCC
Q psy11336 56 RVFIWDLDETIIIFH-SLLTGSY---ATKHGK 83 (194)
Q Consensus 56 RVFIWDLDETiIIfh-SLLtGsy---A~~~~K 83 (194)
+..|||||-||+=.. .+..-.+ ...||.
T Consensus 41 k~VIFDlDGTLvDS~~~~~~~a~~~~l~~~G~ 72 (286)
T PLN02779 41 EALLFDCDGVLVETERDGHRVAFNDAFKEFGL 72 (286)
T ss_pred cEEEEeCceeEEccccHHHHHHHHHHHHHcCC
Confidence 688999999998766 5554433 345554
No 4
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=72.39 E-value=2.1 Score=35.16 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=31.6
Q ss_pred ceeEEeecchhhhHHhhhccc---hhhhhcCCChHHHhH----HHHHHHHHHHHh
Q psy11336 55 DRVFIWDLDETIIIFHSLLTG---SYATKHGKCPQTVIQ----LGYKMEEMIFGV 102 (194)
Q Consensus 55 eRVFIWDLDETiIIfhSLLtG---syA~~~~KD~~~~v~----lG~rmEemIf~l 102 (194)
.++.|||||-||+=..-.+.. ..++++|.++..... +|.-+.++|..+
T Consensus 4 ~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~ 58 (220)
T COG0546 4 IKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLDELIERL 58 (220)
T ss_pred CCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHHHhcCCHHHHHHHH
Confidence 368999999999987776666 445777766432222 445555565543
No 5
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=71.13 E-value=2.3 Score=32.95 Aligned_cols=27 Identities=26% Similarity=0.081 Sum_probs=21.2
Q ss_pred ccceeEEeecchhhhHHhhhccchhhh
Q psy11336 53 ILDRVFIWDLDETIIIFHSLLTGSYAT 79 (194)
Q Consensus 53 ~~eRVFIWDLDETiIIfhSLLtGsyA~ 79 (194)
+.+|+|.|++||.++++=.+.=|-.++
T Consensus 17 ~~~ri~~~~~DE~~~~~~~~~~Gi~~~ 43 (101)
T PRK13707 17 NQSRWFGLPLDELIPAAICIGWGITTS 43 (101)
T ss_pred CCCeEEeeeHHHHHHHHHHHHHHHHHc
Confidence 578999999999998876666664443
No 6
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=70.92 E-value=2.2 Score=34.43 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=14.4
Q ss_pred cceeEEeecchhhhHHhhh
Q psy11336 54 LDRVFIWDLDETIIIFHSL 72 (194)
Q Consensus 54 ~eRVFIWDLDETiIIfhSL 72 (194)
-+.+-|+|||||+|=....
T Consensus 5 ~kl~LVLDLDeTLihs~~~ 23 (156)
T TIGR02250 5 KKLHLVLDLDQTLIHTTKD 23 (156)
T ss_pred CceEEEEeCCCCccccccc
Confidence 3567899999999965443
No 7
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=67.71 E-value=2.5 Score=32.29 Aligned_cols=12 Identities=42% Similarity=0.877 Sum_probs=10.9
Q ss_pred eeEEeecchhhh
Q psy11336 56 RVFIWDLDETII 67 (194)
Q Consensus 56 RVFIWDLDETiI 67 (194)
+++|||||.|+.
T Consensus 1 kli~~DlD~Tl~ 12 (128)
T TIGR01681 1 KVIVFDLDNTLW 12 (128)
T ss_pred CEEEEeCCCCCC
Confidence 589999999987
No 8
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=65.49 E-value=3 Score=31.28 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=21.5
Q ss_pred ccceeEEeecchhhhHHhhhccchhh
Q psy11336 53 ILDRVFIWDLDETIIIFHSLLTGSYA 78 (194)
Q Consensus 53 ~~eRVFIWDLDETiIIfhSLLtGsyA 78 (194)
+..|++.||+||.++.+-.+.-|-..
T Consensus 11 ~p~~il~~~~De~~~~~~~~~~gi~~ 36 (95)
T PF07178_consen 11 DPPRILFWPMDEFIPALILFVIGILS 36 (95)
T ss_pred CcceeeeecHHHHHHHHHHHHHHHHH
Confidence 57899999999999988877777444
No 9
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=64.37 E-value=3.5 Score=34.28 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=18.2
Q ss_pred ceeEEeecchhhhHHhhhccchhhhhcCCC
Q psy11336 55 DRVFIWDLDETIIIFHSLLTGSYATKHGKC 84 (194)
Q Consensus 55 eRVFIWDLDETiIIfhSLLtGsyA~~~~KD 84 (194)
.|+.++|||+|||=- + -.-++.+.|.+
T Consensus 1 ~~la~FDlD~TLi~~--~-w~~~~~~~g~~ 27 (203)
T TIGR02137 1 MEIACLDLEGVLVPE--I-WIAFAEKTGID 27 (203)
T ss_pred CeEEEEeCCcccHHH--H-HHHHHHHcCCc
Confidence 378999999999942 2 23555555543
No 10
>PHA02597 30.2 hypothetical protein; Provisional
Probab=63.82 E-value=7.4 Score=30.73 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=20.4
Q ss_pred eeEEeecchhhhHHhhhccchhhhhcCCCh
Q psy11336 56 RVFIWDLDETIIIFHSLLTGSYATKHGKCP 85 (194)
Q Consensus 56 RVFIWDLDETiIIfhSLLtGsyA~~~~KD~ 85 (194)
+.+|||||.|||=++.-+. ...++||.+.
T Consensus 3 k~viFDlDGTLiD~~~~~~-~~~~~~g~~~ 31 (197)
T PHA02597 3 PTILTDVDGVLLSWQSGLP-YFAQKYNIPT 31 (197)
T ss_pred cEEEEecCCceEchhhccH-HHHHhcCCCH
Confidence 5799999999998776444 2334677654
No 11
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=62.48 E-value=3.8 Score=31.77 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=12.8
Q ss_pred ceeEEeecchhhhHHh
Q psy11336 55 DRVFIWDLDETIIIFH 70 (194)
Q Consensus 55 eRVFIWDLDETiIIfh 70 (194)
.+..|||||.|||=..
T Consensus 4 ~k~viFD~DGTLid~~ 19 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVM 19 (201)
T ss_pred ceEEEEeCCCCCcCCc
Confidence 3579999999999643
No 12
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=60.26 E-value=4.4 Score=35.50 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=12.0
Q ss_pred cceeEEeecchhhh
Q psy11336 54 LDRVFIWDLDETII 67 (194)
Q Consensus 54 ~eRVFIWDLDETiI 67 (194)
..+++|||||+|+.
T Consensus 2 ~~k~~v~DlDnTlw 15 (320)
T TIGR01686 2 ALKVLVLDLDNTLW 15 (320)
T ss_pred CeEEEEEcCCCCCC
Confidence 45899999999984
No 13
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=56.11 E-value=5.3 Score=30.92 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=17.7
Q ss_pred eeEEeecchhhhHHhhhccc---hhhhhcCCC
Q psy11336 56 RVFIWDLDETIIIFHSLLTG---SYATKHGKC 84 (194)
Q Consensus 56 RVFIWDLDETiIIfhSLLtG---syA~~~~KD 84 (194)
.+.|||||-|||=+.....- ..++.||.+
T Consensus 6 ~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~ 37 (188)
T PRK10725 6 AGLIFDMDGTILDTEPTHRKAWREVLGRYGLQ 37 (188)
T ss_pred eEEEEcCCCcCccCHHHHHHHHHHHHHHcCCC
Confidence 46799999999964333222 223346654
No 14
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=55.97 E-value=4.4 Score=31.17 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=9.9
Q ss_pred eEEeecchhhhHHh
Q psy11336 57 VFIWDLDETIIIFH 70 (194)
Q Consensus 57 VFIWDLDETiIIfh 70 (194)
.-|+|||||||-..
T Consensus 2 ~LVlDLD~TLv~~~ 15 (159)
T PF03031_consen 2 TLVLDLDGTLVHSS 15 (159)
T ss_dssp EEEEE-CTTTEEEE
T ss_pred EEEEeCCCcEEEEe
Confidence 45899999988644
No 15
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=55.38 E-value=5.8 Score=36.56 Aligned_cols=15 Identities=40% Similarity=0.643 Sum_probs=13.2
Q ss_pred ccceeEEeecchhhh
Q psy11336 53 ILDRVFIWDLDETII 67 (194)
Q Consensus 53 ~~eRVFIWDLDETiI 67 (194)
....|-|||||+|+|
T Consensus 120 ~~phVIVfDlD~TLI 134 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLI 134 (297)
T ss_pred CCCcEEEEECCCccc
Confidence 456799999999999
No 16
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=55.01 E-value=6 Score=31.43 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=15.8
Q ss_pred eeEEeecchhhhHHhhhccc
Q psy11336 56 RVFIWDLDETIIIFHSLLTG 75 (194)
Q Consensus 56 RVFIWDLDETiIIfhSLLtG 75 (194)
++.|||||.||+=.+....-
T Consensus 3 ~~viFDlDGTL~ds~~~~~~ 22 (221)
T TIGR02253 3 KAIFFDLDDTLIDTSGLAEK 22 (221)
T ss_pred eEEEEeCCCCCcCCCCccCH
Confidence 57899999999987765443
No 17
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=51.65 E-value=5.8 Score=29.81 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=19.6
Q ss_pred eEEeecchhhhHHh-hhccc--hhhhhcCCChHH
Q psy11336 57 VFIWDLDETIIIFH-SLLTG--SYATKHGKCPQT 87 (194)
Q Consensus 57 VFIWDLDETiIIfh-SLLtG--syA~~~~KD~~~ 87 (194)
++|||+|-||+=.. ..+.. ..+.+|+.|++.
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~ 34 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGEDFQA 34 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcccHHH
Confidence 47999999998764 33333 334456666554
No 18
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=51.58 E-value=6.7 Score=30.07 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=20.3
Q ss_pred eeEEeecchhhhHHhhhccc---hhhhhcCCCh
Q psy11336 56 RVFIWDLDETIIIFHSLLTG---SYATKHGKCP 85 (194)
Q Consensus 56 RVFIWDLDETiIIfhSLLtG---syA~~~~KD~ 85 (194)
++.|||||-||+=...+..- ..++.||.+.
T Consensus 2 ~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~ 34 (185)
T TIGR02009 2 KAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEF 34 (185)
T ss_pred CeEEEcCCCcccCChHHHHHHHHHHHHHcCCCC
Confidence 57899999999976655433 2345667653
No 19
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=51.00 E-value=7.2 Score=31.17 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=15.2
Q ss_pred eeEEeecchhhhHHhhhccc
Q psy11336 56 RVFIWDLDETIIIFHSLLTG 75 (194)
Q Consensus 56 RVFIWDLDETiIIfhSLLtG 75 (194)
+..|||||-|||=......-
T Consensus 4 ~~viFD~DGTL~ds~~~~~~ 23 (214)
T PRK13288 4 NTVLFDLDGTLINTNELIIS 23 (214)
T ss_pred cEEEEeCCCcCccCHHHHHH
Confidence 57899999999976554444
No 20
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=50.12 E-value=7.3 Score=32.25 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=12.4
Q ss_pred ceeEEeecchhhhH
Q psy11336 55 DRVFIWDLDETIII 68 (194)
Q Consensus 55 eRVFIWDLDETiII 68 (194)
-+++|||||.||+=
T Consensus 10 ~k~vIFDlDGTL~d 23 (224)
T PRK14988 10 VDTVLLDMDGTLLD 23 (224)
T ss_pred CCEEEEcCCCCccc
Confidence 46899999999987
No 21
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=49.72 E-value=15 Score=28.61 Aligned_cols=13 Identities=38% Similarity=0.713 Sum_probs=11.2
Q ss_pred eEEeecchhhhHH
Q psy11336 57 VFIWDLDETIIIF 69 (194)
Q Consensus 57 VFIWDLDETiIIf 69 (194)
++|||||-||+=.
T Consensus 2 ~viFDlDGTL~ds 14 (184)
T TIGR01993 2 VWFFDLDNTLYPH 14 (184)
T ss_pred eEEEeCCCCCCCC
Confidence 6899999999954
No 22
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=48.82 E-value=10 Score=28.70 Aligned_cols=26 Identities=19% Similarity=0.040 Sum_probs=20.6
Q ss_pred ccceeEEeecchhhhHHhhhccchhh
Q psy11336 53 ILDRVFIWDLDETIIIFHSLLTGSYA 78 (194)
Q Consensus 53 ~~eRVFIWDLDETiIIfhSLLtGsyA 78 (194)
+-.|||.|++||-++++=.+.-|-.+
T Consensus 11 ~~~~i~g~t~DE~i~~~~~~~~Gi~~ 36 (95)
T TIGR02762 11 EQPRILGLPLDEFLPGATLFGIGILS 36 (95)
T ss_pred CCCeEEEeeHHHHHHHHHHHHHHHHH
Confidence 46799999999998887777666444
No 23
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=48.27 E-value=8.2 Score=31.87 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.6
Q ss_pred eeEEeecchhhhHHh
Q psy11336 56 RVFIWDLDETIIIFH 70 (194)
Q Consensus 56 RVFIWDLDETiIIfh 70 (194)
+.+|||||-|||=+.
T Consensus 3 k~viFD~DGTLiDs~ 17 (253)
T TIGR01422 3 EAVIFDWAGTTVDFG 17 (253)
T ss_pred eEEEEeCCCCeecCC
Confidence 468999999999753
No 24
>PRK11590 hypothetical protein; Provisional
Probab=48.00 E-value=11 Score=30.66 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=18.4
Q ss_pred ceeEEeecchhhhHHhhhccc--hhh-hhcCCC
Q psy11336 55 DRVFIWDLDETIIIFHSLLTG--SYA-TKHGKC 84 (194)
Q Consensus 55 eRVFIWDLDETiIIfhSLLtG--syA-~~~~KD 84 (194)
.++.|+|||.||+ ....++. .++ ++++..
T Consensus 6 ~k~~iFD~DGTL~-~~d~~~~~~~~~~~~~g~~ 37 (211)
T PRK11590 6 RRVVFFDLDGTLH-QQDMFGSFLRYLLRRQPLN 37 (211)
T ss_pred ceEEEEecCCCCc-ccchHHHHHHHHHHhcchh
Confidence 5789999999999 2222222 344 566633
No 25
>PF15366 DUF4597: Domain of unknown function (DUF4597)
Probab=47.12 E-value=12 Score=27.39 Aligned_cols=32 Identities=41% Similarity=0.601 Sum_probs=25.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccceeEEeecchh
Q psy11336 29 SAGTPTPIIPNPCPSPGSPAGDSRILDRVFIWDLDET 65 (194)
Q Consensus 29 ~~~~~~~~~~~~~~s~~s~p~d~~~~eRVFIWDLDET 65 (194)
-.+-|.-+|+.|+++++--|-|+ |--+| ||||
T Consensus 19 hLdVPnIIiTPPTPTg~~lpRDs----~~~vw-lDe~ 50 (62)
T PF15366_consen 19 HLDVPNIIITPPTPTGMMLPRDS----RRTVW-LDET 50 (62)
T ss_pred ccCCCceEecCCCCCceeccccc----Cccee-cccc
Confidence 45667778889999999988888 55677 7886
No 26
>PF08360 TetR_C_5: QacR-like protein, C-terminal region; InterPro: IPR013571 This entry represents the C-terminal domain found in the multidrug-binding transcription regulator QacR (P23217 from SWISSPROT) from Staphylococcus aureus, which is a member of the TetR (tetracycline-resistance) transcriptional regulator family of proteins. QacR is able to bind various environmental agents, which include a number of cationic lipophilic compounds, and thus regulate the transcription of QacA (P23215 from SWISSPROT), a multidrug efflux pump []. The C-terminal region of QacR contains a multifaceted, expansive drug-binding pocket, which is composed of several separate, but linked, binding sites []. The C-terminal domains of QacR and TetR share a multi-helical, interlocking structure.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G0E_E 1JUM_A 1RPW_D 1QVT_B 2HQ5_D 1JT0_B 2DTZ_E 1JUP_D 1JT6_D 1JUS_E ....
Probab=46.85 E-value=23 Score=28.07 Aligned_cols=40 Identities=25% Similarity=0.208 Sum_probs=28.3
Q ss_pred ecchhhhHHhhhccchhhhhcCCChHHHhHHHHHHHHHHH
Q psy11336 61 DLDETIIIFHSLLTGSYATKHGKCPQTVIQLGYKMEEMIF 100 (194)
Q Consensus 61 DLDETiIIfhSLLtGsyA~~~~KD~~~~v~lG~rmEemIf 100 (194)
|.+++.+||+++|.|-.--.|.+|......+.+..-.+++
T Consensus 87 dv~~~a~il~s~l~GL~~~~~~~~~~e~~~l~~~ai~ifL 126 (131)
T PF08360_consen 87 DVEELAYILMSLLDGLSQWYYEKDKEELEALYRKAIDIFL 126 (131)
T ss_dssp THHHHHHHHHHHHHHHHHTTTSS-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 5678899999999996655556777776666665555544
No 27
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=46.18 E-value=14 Score=34.60 Aligned_cols=48 Identities=25% Similarity=0.228 Sum_probs=28.3
Q ss_pred eeEEeecchhhhH----HhhhccchhhhhcCCChHHH----hHHHHHHHHHHHHhh
Q psy11336 56 RVFIWDLDETIII----FHSLLTGSYATKHGKCPQTV----IQLGYKMEEMIFGVA 103 (194)
Q Consensus 56 RVFIWDLDETiII----fhSLLtGsyA~~~~KD~~~~----v~lG~rmEemIf~la 103 (194)
+.+|||||-|||= .+.-..-..++++|.++... .-+|..+++++-.+.
T Consensus 132 ~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~~~~G~~~~~~l~~ll 187 (381)
T PLN02575 132 LGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRRVEGMKNEQAISEVL 187 (381)
T ss_pred CEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHh
Confidence 3589999999993 23222224667888664332 224666666655543
No 28
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=45.69 E-value=8.2 Score=30.92 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=20.3
Q ss_pred eeEEeecchhhhHHhhhccc---hhhhhcCCC
Q psy11336 56 RVFIWDLDETIIIFHSLLTG---SYATKHGKC 84 (194)
Q Consensus 56 RVFIWDLDETiIIfhSLLtG---syA~~~~KD 84 (194)
+..|||+|.|||=...+..- ..+.+||..
T Consensus 5 ~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~ 36 (221)
T PRK10563 5 EAVFFDCDGTLVDSEVICSRAYVTMFAEFGIT 36 (221)
T ss_pred CEEEECCCCCCCCChHHHHHHHHHHHHHcCCC
Confidence 57899999999987665433 344567754
No 29
>PLN02954 phosphoserine phosphatase
Probab=42.05 E-value=29 Score=27.74 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=14.8
Q ss_pred ceeEEeecchhhhHHhhh
Q psy11336 55 DRVFIWDLDETIIIFHSL 72 (194)
Q Consensus 55 eRVFIWDLDETiIIfhSL 72 (194)
-+++|+|||-||+-..++
T Consensus 12 ~k~viFDfDGTL~~~~~~ 29 (224)
T PLN02954 12 ADAVCFDVDSTVCVDEGI 29 (224)
T ss_pred CCEEEEeCCCcccchHHH
Confidence 368899999999976665
No 30
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=41.06 E-value=11 Score=28.94 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=15.9
Q ss_pred eEEeecchhhhHHhhhccchh
Q psy11336 57 VFIWDLDETIIIFHSLLTGSY 77 (194)
Q Consensus 57 VFIWDLDETiIIfhSLLtGsy 77 (194)
+.|||||.|||=+...+.-.+
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~ 21 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACL 21 (175)
T ss_pred CeEEecCCcCcccHHHHHHHH
Confidence 469999999998776555543
No 31
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=39.91 E-value=11 Score=29.95 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=11.2
Q ss_pred EEeecchhhhHHhhh
Q psy11336 58 FIWDLDETIIIFHSL 72 (194)
Q Consensus 58 FIWDLDETiIIfhSL 72 (194)
.|||||.||+=....
T Consensus 1 iiFDlDGTL~Ds~~~ 15 (205)
T TIGR01454 1 VVFDLDGVLVDSFAV 15 (205)
T ss_pred CeecCcCccccCHHH
Confidence 489999999864333
No 32
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=39.83 E-value=12 Score=29.47 Aligned_cols=30 Identities=23% Similarity=0.394 Sum_probs=20.0
Q ss_pred eeEEeecchhhhHHhhhccchhh---hhcCCCh
Q psy11336 56 RVFIWDLDETIIIFHSLLTGSYA---TKHGKCP 85 (194)
Q Consensus 56 RVFIWDLDETiIIfhSLLtGsyA---~~~~KD~ 85 (194)
++.|||||.|||=.++...-.+. .++|..+
T Consensus 2 k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~ 34 (224)
T TIGR02254 2 KTLLFDLDDTILDFQAAEALALRLLFEDQGIPL 34 (224)
T ss_pred CEEEEcCcCcccccchHHHHHHHHHHHHhCCCc
Confidence 46899999999987665543333 3456543
No 33
>PRK11587 putative phosphatase; Provisional
Probab=39.72 E-value=22 Score=28.76 Aligned_cols=30 Identities=30% Similarity=0.599 Sum_probs=19.3
Q ss_pred eeEEeecchhhhHHhhhccc---hhhhhcCCCh
Q psy11336 56 RVFIWDLDETIIIFHSLLTG---SYATKHGKCP 85 (194)
Q Consensus 56 RVFIWDLDETiIIfhSLLtG---syA~~~~KD~ 85 (194)
+..|||||-|||=......- ..+++||..+
T Consensus 4 k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~ 36 (218)
T PRK11587 4 KGFLFDLDGTLVDSLPAVERAWSNWADRHGIAP 36 (218)
T ss_pred CEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCH
Confidence 35799999999875544433 3345667544
No 34
>PF04068 RLI: Possible Fer4-like domain in RNase L inhibitor, RLI; InterPro: IPR007209 This is a possible metal-binding domain in endoribonuclease RNase L inhibitor. It is found at the N-terminal end of RNase L inhibitor proteins, adjacent to the 4Fe-4S binding domain, fer4, IPR001450 from INTERPRO. Also often found adjacent to IPR007177 from INTERPRO in uncharacterised proteins. The RNase L system plays a major role in the anti-viral and anti-proliferative activities of interferons [], and could possibly play a more general role in the regulation of RNA stability in mammalian cells. Inhibitory activity requires concentration-dependent association of RLI with RNase L [].; PDB: 3J16_B 3BK7_A.
Probab=39.59 E-value=17 Score=23.44 Aligned_cols=10 Identities=40% Similarity=1.052 Sum_probs=7.1
Q ss_pred ceeEEeecch
Q psy11336 55 DRVFIWDLDE 64 (194)
Q Consensus 55 eRVFIWDLDE 64 (194)
.||+|||.|+
T Consensus 1 mrlav~d~~~ 10 (35)
T PF04068_consen 1 MRLAVWDFDQ 10 (35)
T ss_dssp EEEEEE-CCC
T ss_pred CEEEEEEcCC
Confidence 3789999886
No 35
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=38.73 E-value=12 Score=28.64 Aligned_cols=28 Identities=25% Similarity=0.113 Sum_probs=17.9
Q ss_pred EEeecchhhhHHhhhccch---hhhhcCCCh
Q psy11336 58 FIWDLDETIIIFHSLLTGS---YATKHGKCP 85 (194)
Q Consensus 58 FIWDLDETiIIfhSLLtGs---yA~~~~KD~ 85 (194)
.|||+|.||+=......-. .++.||.++
T Consensus 2 iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~ 32 (185)
T TIGR01990 2 VIFDLDGVITDTAEYHYLAWKALADELGIPF 32 (185)
T ss_pred eEEcCCCccccChHHHHHHHHHHHHHcCCCC
Confidence 6999999998655444332 235566553
No 36
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=37.87 E-value=15 Score=28.05 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=11.6
Q ss_pred EEeecchhhhHHhh
Q psy11336 58 FIWDLDETIIIFHS 71 (194)
Q Consensus 58 FIWDLDETiIIfhS 71 (194)
.|||+|.||+-..+
T Consensus 1 v~fD~DGTL~~~~~ 14 (192)
T PF12710_consen 1 VIFDFDGTLTDSDS 14 (192)
T ss_dssp EEEESBTTTBSSHH
T ss_pred eEEecCcCeecCCC
Confidence 58999999988663
No 37
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=37.53 E-value=14 Score=29.10 Aligned_cols=29 Identities=17% Similarity=0.238 Sum_probs=17.5
Q ss_pred eeEEeecchhhhHHhhhccc---hhhhhcCCC
Q psy11336 56 RVFIWDLDETIIIFHSLLTG---SYATKHGKC 84 (194)
Q Consensus 56 RVFIWDLDETiIIfhSLLtG---syA~~~~KD 84 (194)
++.|||||.|||=+.....- ..+++||.+
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~g~~ 32 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEIARKYGVE 32 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHHHHHhCCC
Confidence 46899999999854332222 223456654
No 38
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=35.81 E-value=17 Score=28.56 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=18.1
Q ss_pred eeEEeecchhhhHHhhhccchhhhhcC
Q psy11336 56 RVFIWDLDETIIIFHSLLTGSYATKHG 82 (194)
Q Consensus 56 RVFIWDLDETiIIfhSLLtGsyA~~~~ 82 (194)
++.|+|||.|||=+..+ .-.+.+.++
T Consensus 2 k~viFD~dgTLiD~~~~-~~~~~~~~~ 27 (198)
T TIGR01428 2 KALVFDVYGTLFDVHSV-VERFAELYG 27 (198)
T ss_pred cEEEEeCCCcCccHHHH-HHHHHHHhC
Confidence 46799999999988875 223444443
No 39
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=35.69 E-value=26 Score=27.70 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=17.5
Q ss_pred eeEEeecchhhhHHhhhcc---chhhhhcCCC
Q psy11336 56 RVFIWDLDETIIIFHSLLT---GSYATKHGKC 84 (194)
Q Consensus 56 RVFIWDLDETiIIfhSLLt---GsyA~~~~KD 84 (194)
++.|||+|-||+=...... ..+++.||..
T Consensus 7 ~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~ 38 (226)
T PRK13222 7 RAVAFDLDGTLVDSAPDLAAAVNAALAALGLP 38 (226)
T ss_pred cEEEEcCCcccccCHHHHHHHHHHHHHHCCCC
Confidence 3679999999993221111 2455666654
No 40
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=35.48 E-value=13 Score=29.43 Aligned_cols=11 Identities=18% Similarity=0.534 Sum_probs=9.7
Q ss_pred eEEeecchhhh
Q psy11336 57 VFIWDLDETII 67 (194)
Q Consensus 57 VFIWDLDETiI 67 (194)
..|||||-|||
T Consensus 2 ~viFD~DGTLi 12 (197)
T TIGR01548 2 ALVLDMDGVMA 12 (197)
T ss_pred ceEEecCceEE
Confidence 35999999999
No 41
>PRK09449 dUMP phosphatase; Provisional
Probab=35.42 E-value=19 Score=28.82 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=10.8
Q ss_pred eeEEeecchhhh
Q psy11336 56 RVFIWDLDETII 67 (194)
Q Consensus 56 RVFIWDLDETiI 67 (194)
+..|||||-|||
T Consensus 4 k~iiFDlDGTLi 15 (224)
T PRK09449 4 DWILFDADETLF 15 (224)
T ss_pred cEEEEcCCCchh
Confidence 468999999999
No 42
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=35.29 E-value=13 Score=34.15 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=15.5
Q ss_pred CCCCCCccccceeEEeecchhhh
Q psy11336 45 GSPAGDSRILDRVFIWDLDETII 67 (194)
Q Consensus 45 ~s~p~d~~~~eRVFIWDLDETiI 67 (194)
.++.|.++-+ +..|||||-|||
T Consensus 232 ~~~~~~~~m~-k~vIFDlDGTLi 253 (459)
T PRK06698 232 YSSKGENEML-QALIFDMDGTLF 253 (459)
T ss_pred ccccchHHhh-hheeEccCCcee
Confidence 3445555233 678999999998
No 43
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=34.89 E-value=14 Score=27.97 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=13.0
Q ss_pred eEEeecchhhhHHhhh
Q psy11336 57 VFIWDLDETIIIFHSL 72 (194)
Q Consensus 57 VFIWDLDETiIIfhSL 72 (194)
..|||||-|||=..+.
T Consensus 1 ~vlFDlDgtLv~~~~~ 16 (183)
T TIGR01509 1 AILFDLDGVLVDTSSA 16 (183)
T ss_pred CeeeccCCceechHHH
Confidence 3699999999987654
No 44
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=34.23 E-value=18 Score=29.66 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=25.2
Q ss_pred eeEEeecchhhhHHhhhccc---hhhhhcCCC---hHHHh-HHHHHHHHHHH
Q psy11336 56 RVFIWDLDETIIIFHSLLTG---SYATKHGKC---PQTVI-QLGYKMEEMIF 100 (194)
Q Consensus 56 RVFIWDLDETiIIfhSLLtG---syA~~~~KD---~~~~v-~lG~rmEemIf 100 (194)
+.+|||||-|||=..-+..- ....+||.. ..... .+|..+++++.
T Consensus 13 k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 64 (229)
T PRK13226 13 RAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGARAMLA 64 (229)
T ss_pred CEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhhhHHHHHHH
Confidence 56899999999865444333 334556632 11111 24666666554
No 45
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=33.73 E-value=16 Score=29.25 Aligned_cols=13 Identities=38% Similarity=0.636 Sum_probs=10.3
Q ss_pred eEEeecchhhhHH
Q psy11336 57 VFIWDLDETIIIF 69 (194)
Q Consensus 57 VFIWDLDETiIIf 69 (194)
.-|-|||||+|=.
T Consensus 3 ~lvlDLDeTLi~~ 15 (162)
T TIGR02251 3 TLVLDLDETLVHS 15 (162)
T ss_pred EEEEcCCCCcCCC
Confidence 4578999999953
No 46
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=33.72 E-value=16 Score=27.70 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=12.0
Q ss_pred eEEeecchhhhHHhh
Q psy11336 57 VFIWDLDETIIIFHS 71 (194)
Q Consensus 57 VFIWDLDETiIIfhS 71 (194)
++|+|||.||+--.+
T Consensus 1 l~~fD~DgTl~~~~s 15 (177)
T TIGR01488 1 LAIFDFDGTLTRQDS 15 (177)
T ss_pred CEEecCccccccchh
Confidence 379999999996554
No 47
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=33.60 E-value=19 Score=30.27 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=13.4
Q ss_pred eeEEeecchhhhHHhh
Q psy11336 56 RVFIWDLDETIIIFHS 71 (194)
Q Consensus 56 RVFIWDLDETiIIfhS 71 (194)
+.+|||||-|||=++.
T Consensus 5 k~vIFDlDGTLiDs~~ 20 (267)
T PRK13478 5 QAVIFDWAGTTVDFGS 20 (267)
T ss_pred EEEEEcCCCCeecCCC
Confidence 5789999999998754
No 48
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=33.36 E-value=25 Score=28.31 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=20.2
Q ss_pred eeEEeecchhhhHHhhhccch---hhhhcCCCh
Q psy11336 56 RVFIWDLDETIIIFHSLLTGS---YATKHGKCP 85 (194)
Q Consensus 56 RVFIWDLDETiIIfhSLLtGs---yA~~~~KD~ 85 (194)
+..|||+|-||+=++....-. .+..||.+.
T Consensus 8 k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~ 40 (222)
T PRK10826 8 LAAIFDMDGLLIDSEPLWDRAELDVMASLGVDI 40 (222)
T ss_pred cEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCC
Confidence 567999999998766555543 334567543
No 49
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=33.23 E-value=17 Score=30.08 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=15.9
Q ss_pred eeEEeecchhhhHHhhhccc
Q psy11336 56 RVFIWDLDETIIIFHSLLTG 75 (194)
Q Consensus 56 RVFIWDLDETiIIfhSLLtG 75 (194)
++.|+|||.||+=.+..+..
T Consensus 11 k~iiFDlDGTL~D~~~~~~~ 30 (238)
T PRK10748 11 SALTFDLDDTLYDNRPVILR 30 (238)
T ss_pred eeEEEcCcccccCChHHHHH
Confidence 57899999999887665554
No 50
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=32.30 E-value=20 Score=28.66 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=14.3
Q ss_pred eeEEeecchhhhHHhhhccc
Q psy11336 56 RVFIWDLDETIIIFHSLLTG 75 (194)
Q Consensus 56 RVFIWDLDETiIIfhSLLtG 75 (194)
++.|||||-|||-......-
T Consensus 2 k~iiFD~DGTL~ds~~~~~~ 21 (220)
T TIGR03351 2 SLVVLDMAGTTVDEDGLVYR 21 (220)
T ss_pred cEEEEecCCCeeccCchHHH
Confidence 36799999999975444433
No 51
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=32.26 E-value=17 Score=28.54 Aligned_cols=11 Identities=36% Similarity=0.718 Sum_probs=9.5
Q ss_pred EEeecchhhhH
Q psy11336 58 FIWDLDETIII 68 (194)
Q Consensus 58 FIWDLDETiII 68 (194)
.|||||-|||=
T Consensus 1 viFD~DGTL~D 11 (213)
T TIGR01449 1 VLFDLDGTLVD 11 (213)
T ss_pred CeecCCCcccc
Confidence 38999999984
No 52
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=32.24 E-value=20 Score=28.55 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=19.4
Q ss_pred ceeEEeecchhhhHHhhhccchhhhhcCCC
Q psy11336 55 DRVFIWDLDETIIIFHSLLTGSYATKHGKC 84 (194)
Q Consensus 55 eRVFIWDLDETiIIfhSLLtGsyA~~~~KD 84 (194)
.+++|+|||.||+-..++- ..++++|+.
T Consensus 14 ~k~iiFD~DGTL~~~~~~~--~l~~~~g~~ 41 (219)
T TIGR00338 14 KKLVVFDMDSTLINAETID--EIAKIAGVE 41 (219)
T ss_pred CCEEEEeCcccCCCchHHH--HHHHHhCCH
Confidence 3589999999999866531 334556653
No 53
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=32.07 E-value=22 Score=27.13 Aligned_cols=17 Identities=35% Similarity=0.317 Sum_probs=13.6
Q ss_pred eeEEeecchhhhHHhhh
Q psy11336 56 RVFIWDLDETIIIFHSL 72 (194)
Q Consensus 56 RVFIWDLDETiIIfhSL 72 (194)
-++|+|+|-|||=+.+.
T Consensus 2 ~~iiFD~dgTL~~~~~~ 18 (188)
T TIGR01489 2 VVVVSDFDGTITLNDSD 18 (188)
T ss_pred eEEEEeCCCcccCCCch
Confidence 37899999999866653
No 54
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=31.56 E-value=30 Score=27.81 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=20.2
Q ss_pred EeecchhhhHHhhhccchhhhhcCCC
Q psy11336 59 IWDLDETIIIFHSLLTGSYATKHGKC 84 (194)
Q Consensus 59 IWDLDETiIIfhSLLtGsyA~~~~KD 84 (194)
.=|||+||.=|.+.+.--|.+.|+++
T Consensus 6 ~iDiDgVLad~~~~~~~~~n~~~~~~ 31 (191)
T PF06941_consen 6 AIDIDGVLADFNSAFIEWFNEEFGKN 31 (191)
T ss_dssp EEESBTTTB-HHHHHHHHHHHHTTTS
T ss_pred EEECCCCCcccHHHHHHHHHHHcCCC
Confidence 34999999988877777777788877
No 55
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=30.02 E-value=24 Score=30.17 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=20.9
Q ss_pred cceeEEeecchhhhHHhhhccch---hhhhcCCCh
Q psy11336 54 LDRVFIWDLDETIIIFHSLLTGS---YATKHGKCP 85 (194)
Q Consensus 54 ~eRVFIWDLDETiIIfhSLLtGs---yA~~~~KD~ 85 (194)
+-.+.|||||.||+=......-. .+.+||.++
T Consensus 12 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~ 46 (272)
T PRK13223 12 LPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPP 46 (272)
T ss_pred cCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCC
Confidence 45589999999998654444442 235667553
No 56
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=29.47 E-value=19 Score=24.77 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=13.9
Q ss_pred eEEeecchhhhHHhhhcc
Q psy11336 57 VFIWDLDETIIIFHSLLT 74 (194)
Q Consensus 57 VFIWDLDETiIIfhSLLt 74 (194)
++|.|+|.|++--++.+.
T Consensus 1 ~~vfD~D~tl~~~~~~~~ 18 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIA 18 (139)
T ss_pred CeEEccCCceEccCcccc
Confidence 579999999987775443
No 57
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=28.67 E-value=19 Score=28.20 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=11.2
Q ss_pred EEeecchhhhHHhh
Q psy11336 58 FIWDLDETIIIFHS 71 (194)
Q Consensus 58 FIWDLDETiIIfhS 71 (194)
.++|+|+||+=..|
T Consensus 2 a~FD~DgTL~~~~s 15 (202)
T TIGR01490 2 AFFDFDGTLTAKDT 15 (202)
T ss_pred eEEccCCCCCCCch
Confidence 58999999986444
No 58
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=28.51 E-value=24 Score=29.54 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=14.8
Q ss_pred eeEEeecchhhhHHhhhcc
Q psy11336 56 RVFIWDLDETIIIFHSLLT 74 (194)
Q Consensus 56 RVFIWDLDETiIIfhSLLt 74 (194)
+.+|||||-|||=+..+..
T Consensus 23 k~viFDlDGTLiDs~~~~~ 41 (248)
T PLN02770 23 EAVLFDVDGTLCDSDPLHY 41 (248)
T ss_pred CEEEEcCCCccCcCHHHHH
Confidence 5789999999997655443
No 59
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=28.41 E-value=26 Score=30.37 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=12.2
Q ss_pred eeEEeecchhhhHHhh
Q psy11336 56 RVFIWDLDETIIIFHS 71 (194)
Q Consensus 56 RVFIWDLDETiIIfhS 71 (194)
-..|.|||||++=..-
T Consensus 64 ~aViFDlDgTLlDSs~ 79 (237)
T TIGR01672 64 IAVSFDIDDTVLFSSP 79 (237)
T ss_pred eEEEEeCCCccccCcH
Confidence 3789999999765444
No 60
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=26.66 E-value=29 Score=30.20 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=19.2
Q ss_pred ceeEEeecchhhhHHhhh---ccchhhhhcCCC
Q psy11336 55 DRVFIWDLDETIIIFHSL---LTGSYATKHGKC 84 (194)
Q Consensus 55 eRVFIWDLDETiIIfhSL---LtGsyA~~~~KD 84 (194)
-+.+|||||=|||=..-. ..-..+++||.+
T Consensus 62 ~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~ 94 (273)
T PRK13225 62 LQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYD 94 (273)
T ss_pred cCEEEECCcCccccCHHHHHHHHHHHHHHCCCC
Confidence 557899999998753222 222455677764
No 61
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=25.73 E-value=84 Score=29.59 Aligned_cols=63 Identities=21% Similarity=0.342 Sum_probs=38.1
Q ss_pred CccccceeEEeecchhhhHHhhhccchhhhhcCCC--------------hHHHhHHHHHHHHHHHHhhhhcccccccccc
Q psy11336 50 DSRILDRVFIWDLDETIIIFHSLLTGSYATKHGKC--------------PQTVIQLGYKMEEMIFGVADNHFFFNEVEDC 115 (194)
Q Consensus 50 d~~~~eRVFIWDLDETiIIfhSLLtGsyA~~~~KD--------------~~~~v~lG~rmEemIf~laD~hfFfndlEec 115 (194)
+.+.+.|.-+.|||+.+| +.+++|.+.+.|.++ -..+-..|....+-|.+..++ ++|+|
T Consensus 55 ~~~~~pRav~iD~Ep~vi--~~i~~~~~~~lf~~~~~~~~~~~~gagnnwa~Gy~~g~~~~d~i~d~ir~-----~~E~c 127 (431)
T cd02188 55 DEHYVPRAILIDLEPRVI--NSIQNSEYRNLYNPENIFLSKHGGGAGNNWASGYSQGEEVQEEILDIIDR-----EADGS 127 (431)
T ss_pred CCccCCcceeccCCcchh--hhhhcCccccccCccceEeeccCCCccccHHHHHHHHHHHHHHHHHHHHH-----HHhcC
Confidence 445678889999999886 455666554444322 222333455666666665553 56888
Q ss_pred Cccc
Q psy11336 116 DQVH 119 (194)
Q Consensus 116 Dqvh 119 (194)
|.+.
T Consensus 128 d~l~ 131 (431)
T cd02188 128 DSLE 131 (431)
T ss_pred CCcc
Confidence 8643
No 62
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=25.44 E-value=34 Score=29.20 Aligned_cols=13 Identities=31% Similarity=0.756 Sum_probs=11.1
Q ss_pred ceeEEeecchhhh
Q psy11336 55 DRVFIWDLDETII 67 (194)
Q Consensus 55 eRVFIWDLDETiI 67 (194)
..+-|.|+|||++
T Consensus 72 ~~avv~DIDeTvL 84 (229)
T PF03767_consen 72 PPAVVFDIDETVL 84 (229)
T ss_dssp EEEEEEESBTTTE
T ss_pred CcEEEEECCcccc
Confidence 4578999999987
No 63
>PLN02940 riboflavin kinase
Probab=24.17 E-value=56 Score=29.80 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=21.3
Q ss_pred ccceeEEeecchhhhHHhhhccc---hhhhhcCCC
Q psy11336 53 ILDRVFIWDLDETIIIFHSLLTG---SYATKHGKC 84 (194)
Q Consensus 53 ~~eRVFIWDLDETiIIfhSLLtG---syA~~~~KD 84 (194)
.+-+..|||||-|||=...+..- ..+++||+.
T Consensus 9 ~~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~ 43 (382)
T PLN02940 9 KLVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQ 43 (382)
T ss_pred ccCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCC
Confidence 45677899999999965444433 234667754
No 64
>PF13041 PPR_2: PPR repeat family
Probab=24.16 E-value=90 Score=19.63 Aligned_cols=29 Identities=17% Similarity=0.452 Sum_probs=19.7
Q ss_pred hhHHhhhccchhhhhcCCChHHHhHHHHHHHH
Q psy11336 66 IIIFHSLLTGSYATKHGKCPQTVIQLGYKMEE 97 (194)
Q Consensus 66 iIIfhSLLtGsyA~~~~KD~~~~v~lG~rmEe 97 (194)
++.|+.|+.| |+++ .+..++.++-..|.+
T Consensus 3 ~~~yn~li~~-~~~~--~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 3 VVTYNTLISG-YCKA--GKFEEALKLFKEMKK 31 (50)
T ss_pred hHHHHHHHHH-HHHC--cCHHHHHHHHHHHHH
Confidence 5678888887 4433 567888777666654
No 65
>PF13645 YkuD_2: L,D-transpeptidase catalytic domain
Probab=23.79 E-value=24 Score=30.06 Aligned_cols=34 Identities=29% Similarity=0.551 Sum_probs=25.4
Q ss_pred ccceeEEeecchhhhHHhhhcc-----c-hhhhhcCCChH
Q psy11336 53 ILDRVFIWDLDETIIIFHSLLT-----G-SYATKHGKCPQ 86 (194)
Q Consensus 53 ~~eRVFIWDLDETiIIfhSLLt-----G-syA~~~~KD~~ 86 (194)
.-+|.|||||..-=|++++|.+ | .||++|...+.
T Consensus 47 ~~~R~~v~Dl~~~~~l~~~~VaHG~gsg~~~a~~FSN~~~ 86 (176)
T PF13645_consen 47 GEKRFFVIDLKKGKLLYNTLVAHGRGSGNLYATSFSNRPG 86 (176)
T ss_pred CCCeEEEEECCCCEEEEeeeeecccCCCCCccccCcCCCC
Confidence 4579999999999999887764 3 56777764443
No 66
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=22.97 E-value=37 Score=28.25 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=20.1
Q ss_pred eeEEeecchhhhHH---hhhccchhhhhcCCC
Q psy11336 56 RVFIWDLDETIIIF---HSLLTGSYATKHGKC 84 (194)
Q Consensus 56 RVFIWDLDETiIIf---hSLLtGsyA~~~~KD 84 (194)
+.+|||||=|||=+ |.-..-..+.+||..
T Consensus 3 ~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~ 34 (221)
T COG0637 3 KAVIFDMDGTLVDSEPLHARAWLEALKEYGIE 34 (221)
T ss_pred cEEEEcCCCCcCcchHHHHHHHHHHHHHcCCC
Confidence 47899999999864 333334556678854
No 67
>PF15152 Kisspeptin: Kisspeptin
Probab=22.70 E-value=40 Score=25.84 Aligned_cols=13 Identities=38% Similarity=0.843 Sum_probs=8.4
Q ss_pred CCCCCCCCCCCCC
Q psy11336 130 QDLNGYNFSADGF 142 (194)
Q Consensus 130 qDLS~y~F~~Dgf 142 (194)
||||.||++.=|+
T Consensus 63 kdls~YNwNSFGL 75 (78)
T PF15152_consen 63 KDLSAYNWNSFGL 75 (78)
T ss_pred ccccccccccccc
Confidence 5677777766544
No 68
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=22.63 E-value=44 Score=26.25 Aligned_cols=12 Identities=17% Similarity=0.509 Sum_probs=11.3
Q ss_pred eeEEeecchhhh
Q psy11336 56 RVFIWDLDETII 67 (194)
Q Consensus 56 RVFIWDLDETiI 67 (194)
+++|+|||=||+
T Consensus 2 ~~v~FD~DGTL~ 13 (205)
T PRK13582 2 EIVCLDLEGVLV 13 (205)
T ss_pred eEEEEeCCCCCh
Confidence 689999999999
No 69
>KOG0729|consensus
Probab=22.15 E-value=94 Score=29.73 Aligned_cols=40 Identities=28% Similarity=0.482 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHhhhh----ccccccccccCcccccccccCCC
Q psy11336 89 IQLGYKMEEMIFGVADN----HFFFNEVEDCDQVHIDDISTDDN 128 (194)
Q Consensus 89 v~lG~rmEemIf~laD~----hfFfndlEecDqvhIdDvs~dDn 128 (194)
|.-|.||-+-+|++|-+ .+||.++.-.--...||-+-.||
T Consensus 252 vgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdn 295 (435)
T KOG0729|consen 252 VGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDN 295 (435)
T ss_pred hhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcH
Confidence 55689999999999998 48999998888888888777666
No 70
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=21.96 E-value=41 Score=28.99 Aligned_cols=47 Identities=23% Similarity=0.241 Sum_probs=27.4
Q ss_pred eeEEeecchhhhHHh-hhcc---chhhhhcCCChHH--H--hHHHHHHHHHHHHh
Q psy11336 56 RVFIWDLDETIIIFH-SLLT---GSYATKHGKCPQT--V--IQLGYKMEEMIFGV 102 (194)
Q Consensus 56 RVFIWDLDETiIIfh-SLLt---GsyA~~~~KD~~~--~--v~lG~rmEemIf~l 102 (194)
+.+|||||-|||=.. .+.. -..+.+||..+.. . ...|..+.+++..+
T Consensus 25 k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~~~G~~~~~~~~~l 79 (260)
T PLN03243 25 LGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKRAEGMKNEQAISEV 79 (260)
T ss_pred eEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHH
Confidence 468999999999653 2222 2455667754321 2 23466666665554
No 71
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=21.82 E-value=41 Score=26.71 Aligned_cols=14 Identities=14% Similarity=0.399 Sum_probs=11.7
Q ss_pred eeEEeecchhhhHH
Q psy11336 56 RVFIWDLDETIIIF 69 (194)
Q Consensus 56 RVFIWDLDETiIIf 69 (194)
++.|+|||.|++=+
T Consensus 3 k~viFDldGtL~d~ 16 (211)
T TIGR02247 3 KAVIFDFGGVLLPS 16 (211)
T ss_pred eEEEEecCCceecC
Confidence 47899999999943
No 72
>KOG4217|consensus
Probab=20.38 E-value=1.4e+02 Score=30.04 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=14.9
Q ss_pred eEEeecchhhhH--Hhhhccch
Q psy11336 57 VFIWDLDETIII--FHSLLTGS 76 (194)
Q Consensus 57 VFIWDLDETiII--fhSLLtGs 76 (194)
|.-.+++|+.=| |-.||||+
T Consensus 399 ~~~~~~tdA~~vqqfy~lLtgs 420 (605)
T KOG4217|consen 399 VPHFSGTDALHVQQFYDLLTGS 420 (605)
T ss_pred cccccccHHHHHHHHHHHhhhh
Confidence 444677777777 88999993
No 73
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=20.15 E-value=48 Score=24.16 Aligned_cols=14 Identities=36% Similarity=0.582 Sum_probs=11.0
Q ss_pred EEeecchhhhHHhh
Q psy11336 58 FIWDLDETIIIFHS 71 (194)
Q Consensus 58 FIWDLDETiIIfhS 71 (194)
.|||||.||+=...
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 48999999986554
No 74
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=20.01 E-value=86 Score=29.50 Aligned_cols=62 Identities=27% Similarity=0.347 Sum_probs=35.8
Q ss_pred CccccceeEEeecchhhhHHhhhccchhhh--hcCCC------------hHHHh-HHHHHHHHHHHHhhhhccccccccc
Q psy11336 50 DSRILDRVFIWDLDETIIIFHSLLTGSYAT--KHGKC------------PQTVI-QLGYKMEEMIFGVADNHFFFNEVED 114 (194)
Q Consensus 50 d~~~~eRVFIWDLDETiIIfhSLLtGsyA~--~~~KD------------~~~~v-~lG~rmEemIf~laD~hfFfndlEe 114 (194)
+.+.+.|.-+.|||...| +.++++.+.. .|.++ -..+- ..|.++.+-|++... .++|+
T Consensus 50 ~~~~~pRav~iD~ep~vi--~~i~~~~~~~~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir-----~~~E~ 122 (446)
T cd02189 50 DGQPIARSVLVDMEPKVI--ESTLSKSSGGTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIR-----KEVEK 122 (446)
T ss_pred CCCcCCceeecCCCchHH--HHhhcCCCCcccccCchheeecCCCCccchhccccccchhhHHHHHHHHH-----HHHHh
Confidence 335788999999999876 6667664321 22111 11110 135666666666555 36788
Q ss_pred cCcc
Q psy11336 115 CDQV 118 (194)
Q Consensus 115 cDqv 118 (194)
||..
T Consensus 123 cd~~ 126 (446)
T cd02189 123 CDSF 126 (446)
T ss_pred CCCc
Confidence 8764
Done!