RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11336
         (194 letters)



>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing,
           cytoplasm, developmental protein, magnesium, nucleus,
           polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
          Length = 274

 Score =  193 bits (490), Expect = 4e-62
 Identities = 85/137 (62%), Positives = 113/137 (82%), Gaps = 5/137 (3%)

Query: 54  LDRVFIWDLDETIIIFHSLLTGSYATKHGKCPQTVIQLGYKMEEMIFGVADNHFFFNEVE 113
           ++RVF+WDLDETIIIFHSLLTG++A+++GK   T +++G  MEEMIF +AD H FFN++E
Sbjct: 3   MERVFVWDLDETIIIFHSLLTGTFASRYGKDTTTSVRIGLMMEEMIFNLADTHLFFNDLE 62

Query: 114 DCDQVHIDDISTDDNGQDLNGYNFSADGFRASVLNVPSGPPGLCVASGVRGGVDWMRKLA 173
           DCDQ+H+DD+S+DDNGQDL+ YNFSADGF     +  +    LC+ SGV GGVDWMRKLA
Sbjct: 63  DCDQIHVDDVSSDDNGQDLSTYNFSADGF-----HSSAPGANLCLGSGVHGGVDWMRKLA 117

Query: 174 FRYRKIKDIYNNYRNSV 190
           FRYR++K++YN Y+N+V
Sbjct: 118 FRYRRVKEMYNTYKNNV 134


>2of5_H Leucine-rich repeat and death domain-containing protein; death
           domain complex, apoptosis; 3.20A {Homo sapiens}
          Length = 118

 Score = 31.4 bits (71), Expect = 0.070
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 165 GVDW---MRKLAFRYRKIKDIYNNYRNSVYLMC 194
           G+DW      L   YR+++ I + +R+ +    
Sbjct: 24  GLDWPAVALHLGVSYREVQRIRHEFRDDLDEQI 56


>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus}
           SCOP: a.77.1.2
          Length = 99

 Score = 29.7 bits (67), Expect = 0.22
 Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 3/33 (9%)

Query: 165 GVDW---MRKLAFRYRKIKDIYNNYRNSVYLMC 194
           G DW    R+L     K+  I   Y  S+    
Sbjct: 25  GRDWKRLARELKVSEAKMDGIEEKYPRSLSERV 57


>2of5_A Death domain-containing protein cradd; death domain complex,
           apoptosis; 3.20A {Homo sapiens}
          Length = 114

 Score = 29.2 bits (65), Expect = 0.33
 Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 3/33 (9%)

Query: 165 GVDW---MRKLAFRYRKIKDIYNNYRNSVYLMC 194
           G +W   +  L      I     N+ ++V    
Sbjct: 35  GPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQV 67


>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A
           {Homo sapiens}
          Length = 115

 Score = 29.2 bits (65), Expect = 0.35
 Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 3/33 (9%)

Query: 165 GVDW---MRKLAFRYRKIKDIYNNYRNSVYLMC 194
           G +W   +  L      I     N+ ++V    
Sbjct: 35  GPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQV 67


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.4 bits (68), Expect = 0.45
 Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 35/80 (43%)

Query: 129  GQDLNGYNFS---------AD-------GFRASVLN-VPSGPPGLCVASGVRGGVDWMRK 171
            G DL  Y  S         AD       GF  S+L+ V + P  L +  G   G      
Sbjct: 1632 GMDL--YKTSKAAQDVWNRADNHFKDTYGF--SILDIVINNPVNLTIHFGGEKG------ 1681

Query: 172  LAFRYRKIKDIYNNYRNSVY 191
                    K I  NY   ++
Sbjct: 1682 --------KRIRENYSAMIF 1693


>2b6b_D CD209 antigen; cryo EM dengue CRD DC-SIGN, icosahedral virus,
           virus-recepto; 25.00A {Homo sapiens} SCOP: d.169.1.1
          Length = 175

 Score = 28.6 bits (64), Expect = 0.89
 Identities = 6/26 (23%), Positives = 14/26 (53%)

Query: 18  RKSSASASNASSAGTPTPIIPNPCPS 43
           + +++ + +     +P P  PNP P+
Sbjct: 150 KSAASCSRDEEQFLSPAPATPNPPPA 175


>2xr6_A CD209 antigen; sugar binding protein, carbohydrate binding,
           mannose; HET: MAN 07B; 1.35A {Homo sapiens} PDB: 1sl4_A*
           2it6_A* 1k9i_A* 2xr5_A* 1sl5_A* 2it5_A* 1xph_A 1k9j_A*
          Length = 170

 Score = 28.3 bits (63), Expect = 1.2
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 18  RKSSASASNASSAGTPTPIIPNPCPS 43
           + +++S+ +     +P P  PNP P+
Sbjct: 145 KSAASSSRDEEQFLSPAPATPNPPPA 170


>4d8o_A Ankyrin-2; ZU5, UPA, death domain, supramodule, protein binding;
           2.20A {Homo sapiens}
          Length = 581

 Score = 26.9 bits (58), Expect = 5.7
 Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 3/33 (9%)

Query: 165 GVDW---MRKLAFRYRKIKDIYNNYRNSVYLMC 194
           G  W    R+L F   +I  I     NS+    
Sbjct: 509 GFSWTELARELDFTEEQIHQIRIENPNSLQDQS 541


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0431    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,089,063
Number of extensions: 180275
Number of successful extensions: 356
Number of sequences better than 10.0: 1
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 10
Length of query: 194
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 106
Effective length of database: 4,244,745
Effective search space: 449942970
Effective search space used: 449942970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.7 bits)