RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11336
         (194 letters)



>d1lmia_ b.1.19.1 (A:) Antigen MPT63/MPB63 (immunoprotective
          extracellular protein) {Mycobacterium tuberculosis
          [TaxId: 1773]}
          Length = 131

 Score = 26.8 bits (59), Expect = 0.93
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 16 RGRKSSASASNASSAGTPTPIIPN 39
           G+   A+A+  +  G+ TP +  
Sbjct: 44 AGQVWEATATVNAIRGSVTPAVSQ 67


>d1hq0a_ d.194.1.1 (A:) Type 1 cytotoxic necrotizing factor,
           catalytic domain {Escherichia coli [TaxId: 562]}
          Length = 295

 Score = 24.8 bits (54), Expect = 6.6
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 99  IFGVADNHFFFNEVEDCDQVHIDDISTDDNGQDLNGYNFSADGFRASVLNVPSG 152
           I+   +      +       +I     D++G D   Y+ +        LN  +G
Sbjct: 35  IYPYFEAANADEQ--QPLFFYIKKDRFDNHGYDQYFYDNTVGPNGIPTLNTYTG 86


>d2feaa1 c.108.1.20 (A:2-227)
           2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
           phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}
          Length = 226

 Score = 24.9 bits (53), Expect = 7.0
 Identities = 7/68 (10%), Positives = 17/68 (25%), Gaps = 2/68 (2%)

Query: 56  RVFIWDLDETIIIFHSLLTGSYATKHGKCPQTVIQLGYKMEEMIFGVADNHFFFNEVEDC 115
              I D D TI +  +++               ++ G   + +         F       
Sbjct: 5   PFIICDFDGTITMNDNIIN--IMKTFAPPEWMALKDGVLSKTLSIKEGVGRMFGLLPSSL 62

Query: 116 DQVHIDDI 123
            +     +
Sbjct: 63  KEEITSFV 70


>d1usra_ b.68.1.1 (A:) Paramyxovirus hemagglutinin-neuraminidase
          head domain {Newcastle disease virus [TaxId: 11176]}
          Length = 448

 Score = 24.8 bits (54), Expect = 8.9
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 23 SASNASSAGTPTPI-IPNPCPSPGSPAGDSRILDRVFIWDLDETIIIFHSLLTGSYATKH 81
          +AS+ +S          N  P+P + +G +RI    F  D+  T   +   +  S    H
Sbjct: 21 NASDVTSFYPSAFQEHLNFIPAPTTGSGCTRI--PSF--DMSATHYCYTHNVILSGCRDH 76

Query: 82 GKCPQTVIQLGY 93
              Q  + LG 
Sbjct: 77 SHSHQ-YLALGV 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0434    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 769,827
Number of extensions: 35189
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 6
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.8 bits)