BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11337
(155 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HB0|A Chain A, Structure Of Edeya2 Complexed With Bef3
pdb|3HB0|B Chain B, Structure Of Edeya2 Complexed With Bef3
pdb|3HB0|C Chain C, Structure Of Edeya2 Complexed With Bef3
pdb|3HB0|D Chain D, Structure Of Edeya2 Complexed With Bef3
pdb|3HB1|A Chain A, Crystal Structure Of Ed-Eya2 Complexed With Alf3
pdb|3HB1|B Chain B, Crystal Structure Of Ed-Eya2 Complexed With Alf3
pdb|3HB1|C Chain C, Crystal Structure Of Ed-Eya2 Complexed With Alf3
pdb|3HB1|D Chain D, Crystal Structure Of Ed-Eya2 Complexed With Alf3
Length = 274
Score = 195 bits (495), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 89/146 (60%), Positives = 114/146 (78%)
Query: 10 TARLDACGLLGPAKREEWLQLRAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQLI 69
T + + GL+G KRE WLQLRAE+E++TD WL+ ++K L LIN RP+C NV+V TTQLI
Sbjct: 129 TYKNNVGGLIGTPKRETWLQLRAELEALTDLWLTHSLKALNLINSRPNCVNVLVTTTQLI 188
Query: 70 PALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAAKQ 129
PAL+K++L+GL +F +ENIYS+TK GK+SCFERI+ RFGRK YVVIGDG +EE AK+
Sbjct: 189 PALAKVLLYGLGSVFPIENIYSATKTGKESCFERIMQRFGRKAVYVVIGDGVEEEQGAKK 248
Query: 130 RNFPFWRISSRSDLAALYHALDNGFL 155
N PFWRIS +DL AL HAL+ +L
Sbjct: 249 HNMPFWRISCHADLEALRHALELEYL 274
>pdb|3GEB|A Chain A, Crystal Structure Of Edeya2
pdb|3GEB|B Chain B, Crystal Structure Of Edeya2
pdb|3GEB|C Chain C, Crystal Structure Of Edeya2
pdb|3GEB|D Chain D, Crystal Structure Of Edeya2
Length = 274
Score = 195 bits (495), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 89/146 (60%), Positives = 114/146 (78%)
Query: 10 TARLDACGLLGPAKREEWLQLRAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQLI 69
T + + GL+G KRE WLQLRAE+E++TD WL+ ++K L LIN RP+C NV+V TTQLI
Sbjct: 129 TYKNNVGGLIGTPKRETWLQLRAELEALTDLWLTHSLKALNLINSRPNCVNVLVTTTQLI 188
Query: 70 PALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAAKQ 129
PAL+K++L+GL +F +ENIYS+TK GK+SCFERI+ RFGRK YVVIGDG +EE AK+
Sbjct: 189 PALAKVLLYGLGSVFPIENIYSATKTGKESCFERIMQRFGRKAVYVVIGDGVEEEQGAKK 248
Query: 130 RNFPFWRISSRSDLAALYHALDNGFL 155
N PFWRIS +DL AL HAL+ +L
Sbjct: 249 HNMPFWRISCHADLEALRHALELEYL 274
>pdb|4EGC|B Chain B, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 294
Score = 194 bits (494), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 114/147 (77%)
Query: 9 TTARLDACGLLGPAKREEWLQLRAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQL 68
T + + GL+G KRE WLQLRAE+E++TD WL+ ++K L LIN RP+C NV+V TTQL
Sbjct: 148 NTYKNNVGGLIGTPKRETWLQLRAELEALTDLWLTHSLKALNLINSRPNCVNVLVTTTQL 207
Query: 69 IPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAAK 128
IPAL+K++L+GL +F +ENIYS+TK GK+SCFERI+ RFGRK YVVIGDG +EE AK
Sbjct: 208 IPALAKVLLYGLGSVFPIENIYSATKTGKESCFERIMQRFGRKAVYVVIGDGVEEEQGAK 267
Query: 129 QRNFPFWRISSRSDLAALYHALDNGFL 155
+ N PFWRIS +DL AL HAL+ +L
Sbjct: 268 KHNMPFWRISCHADLEALRHALELEYL 294
>pdb|3PD6|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase, A Newly Identified Kynurenine
Aminotransferase-Iv
pdb|3PD6|C Chain C, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase, A Newly Identified Kynurenine
Aminotransferase-Iv
pdb|3PDB|B Chain B, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase In Complex With Oxaloacetic Acid
pdb|3PDB|D Chain D, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase In Complex With Oxaloacetic Acid
Length = 401
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 2 SVPPPNETTARLDACGLLGPAKREEWLQLRAEIESVTDNWLSLAIKCLTLINQRPSCTNV 61
S PP N AR+ A L P R++WLQ E++ + D +S+ + ++ + + S N
Sbjct: 288 SNPPLN--GARIAATILTSPDLRKQWLQ---EVKGMADRIISMRTQLVSNLKKEGSSHNW 342
Query: 62 IVITTQL 68
IT Q+
Sbjct: 343 QHITDQI 349
>pdb|3HLM|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate
AminotransferaseKYNURENINE AMINOTRANSFERASE IV
pdb|3HLM|B Chain B, Crystal Structure Of Mouse Mitochondrial Aspartate
AminotransferaseKYNURENINE AMINOTRANSFERASE IV
pdb|3HLM|C Chain C, Crystal Structure Of Mouse Mitochondrial Aspartate
AminotransferaseKYNURENINE AMINOTRANSFERASE IV
pdb|3HLM|D Chain D, Crystal Structure Of Mouse Mitochondrial Aspartate
AminotransferaseKYNURENINE AMINOTRANSFERASE IV
pdb|3PD6|B Chain B, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase, A Newly Identified Kynurenine
Aminotransferase-Iv
pdb|3PD6|D Chain D, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase, A Newly Identified Kynurenine
Aminotransferase-Iv
pdb|3PDB|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase In Complex With Oxaloacetic Acid
pdb|3PDB|C Chain C, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase In Complex With Oxaloacetic Acid
Length = 401
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 2 SVPPPNETTARLDACGLLGPAKREEWLQLRAEIESVTDNWLSLAIKCLTLINQRPSCTNV 61
S PP N AR+ A L P R++WLQ E++ + D +S+ + ++ + + S N
Sbjct: 288 SNPPLN--GARIAATILTSPDLRKQWLQ---EVKGMADRIISMRTQLVSNLKKEGSSHNW 342
Query: 62 IVITTQL 68
IT Q+
Sbjct: 343 QHITDQI 349
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 16 CGLLGPAKREEWLQLRAEIESVTDNWLSL 44
CG+L P KR W + R E + WL +
Sbjct: 51 CGMLNPDKRSSWFKNRTEAPLGSFLWLDV 79
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph
5.8 (Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 16 CGLLGPAKREEWLQLRAEIESVTDNWLSL 44
CG+L P KR W + R E + WL +
Sbjct: 51 CGMLNPDKRSSWFKNRTEAPLGSFLWLDV 79
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 16 CGLLGPAKREEWLQLRAEIESVTDNWLSL 44
CG+L P KR W + R E + WL +
Sbjct: 51 CGMLNPDKRSSWFKNRTEAPLGSFLWLDV 79
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 16 CGLLGPAKREEWLQLRAEIESVTDNWLSL 44
CG+L P KR W + R E + WL +
Sbjct: 51 CGMLNPDKRSSWFKNRTEAPLGSFLWLDV 79
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 16 CGLLGPAKREEWLQLRAEIESVTDNWLSL 44
CG+L P KR W + R E + WL +
Sbjct: 51 CGMLNPDKRSSWFKNRTEAPLGSFLWLDV 79
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 16 CGLLGPAKREEWLQLRAEIESVTDNWLSL 44
CG+L P KR W + R E + WL +
Sbjct: 51 CGMLNPDKRSSWFKNRTEAPLGSFLWLDV 79
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 16 CGLLGPAKREEWLQLRAEIESVTDNWLSL 44
CG+L P KR W + R E + WL +
Sbjct: 53 CGMLNPDKRSSWFKNRTEAPLGSFLWLDV 81
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 16 CGLLGPAKREEWLQLRAEIESVTDNWLSL 44
CG+L P KR W + R E + WL +
Sbjct: 51 CGMLNPDKRSSWFKNRTEAPLGSFLWLDV 79
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 16 CGLLGPAKREEWLQLRAEIESVTDNWLSL 44
CG+L P KR W + R E + WL +
Sbjct: 49 CGMLNPDKRSSWFKNRTEAPLGSFLWLDV 77
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 28 LQLRAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIML 77
+QL AE++S T+ LS AI+ + +C +V+ L PAL+ + L
Sbjct: 1501 MQLSAELQSDTEEILSKAIRLIQ------ACVDVLSSNGWLSPALAAMEL 1544
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 28 LQLRAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIML 77
+QL AE++S T+ LS AI+ + +C +V+ L PAL+ + L
Sbjct: 1501 MQLSAELQSDTEEILSKAIRLIQ------ACVDVLSSNGWLSPALAAMEL 1544
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,311,235
Number of Sequences: 62578
Number of extensions: 149930
Number of successful extensions: 264
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 17
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)