Query psy11337
Match_columns 155
No_of_seqs 73 out of 75
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 15:47:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01658 EYA-cons_domain eyes 100.0 2E-75 4.4E-80 495.2 13.5 147 6-155 112-274 (274)
2 KOG3107|consensus 100.0 4.3E-74 9.2E-79 510.1 13.5 151 5-155 318-468 (468)
3 PF13419 HAD_2: Haloacid dehal 97.9 0.00017 3.6E-09 51.9 9.1 89 46-137 83-176 (176)
4 TIGR01509 HAD-SF-IA-v3 haloaci 97.7 0.00083 1.8E-08 49.8 11.4 87 45-136 90-182 (183)
5 PRK09456 ?-D-glucose-1-phospha 97.7 0.00059 1.3E-08 53.0 10.5 101 45-149 89-196 (199)
6 TIGR02253 CTE7 HAD superfamily 97.7 0.00035 7.6E-09 54.1 8.8 93 45-140 99-197 (221)
7 TIGR01454 AHBA_synth_RP 3-amin 97.7 0.00041 8.8E-09 53.7 9.0 91 45-138 80-175 (205)
8 TIGR02254 YjjG/YfnB HAD superf 97.5 0.001 2.2E-08 51.2 9.4 91 45-139 102-199 (224)
9 TIGR03351 PhnX-like phosphonat 97.5 0.0018 3.9E-08 50.4 10.4 97 47-146 94-200 (220)
10 PRK13288 pyrophosphatase PpaX; 97.4 0.0014 3.1E-08 51.0 9.4 93 45-140 87-184 (214)
11 TIGR01990 bPGM beta-phosphoglu 97.4 0.00097 2.1E-08 50.0 7.5 89 44-137 91-184 (185)
12 PRK14988 GMP/IMP nucleotidase; 97.4 0.0012 2.7E-08 53.0 8.6 91 46-139 99-195 (224)
13 TIGR02247 HAD-1A3-hyp Epoxide 97.3 0.0015 3.2E-08 50.7 8.5 103 45-150 99-208 (211)
14 TIGR01993 Pyr-5-nucltdase pyri 97.3 0.0012 2.7E-08 50.2 7.9 76 59-136 99-183 (184)
15 PHA02597 30.2 hypothetical pro 97.3 0.0019 4.2E-08 49.7 8.6 94 45-141 79-177 (197)
16 PRK13222 phosphoglycolate phos 97.2 0.004 8.6E-08 48.1 9.8 94 42-138 95-193 (226)
17 TIGR01428 HAD_type_II 2-haloal 97.2 0.0029 6.2E-08 48.6 8.9 91 46-139 98-193 (198)
18 PLN02770 haloacid dehalogenase 97.2 0.005 1.1E-07 50.0 10.4 92 45-139 113-209 (248)
19 PRK09449 dUMP phosphatase; Pro 97.1 0.0057 1.2E-07 47.7 9.6 91 45-139 100-197 (224)
20 COG1011 Predicted hydrolase (H 97.1 0.0049 1.1E-07 47.6 8.9 88 46-137 105-198 (229)
21 PLN03243 haloacid dehalogenase 97.0 0.0049 1.1E-07 51.4 9.1 92 45-139 114-210 (260)
22 PRK13478 phosphonoacetaldehyde 97.0 0.0098 2.1E-07 48.5 10.5 94 44-139 105-204 (267)
23 TIGR02009 PGMB-YQAB-SF beta-ph 97.0 0.0039 8.5E-08 46.7 7.2 86 45-135 93-183 (185)
24 TIGR01422 phosphonatase phosph 96.8 0.014 2.9E-07 46.9 9.7 93 45-139 104-202 (253)
25 TIGR01449 PGP_bact 2-phosphogl 96.8 0.013 2.7E-07 45.1 9.1 91 45-139 90-186 (213)
26 PRK10563 6-phosphogluconate ph 96.8 0.004 8.6E-08 48.6 6.2 80 58-138 102-186 (221)
27 TIGR02252 DREG-2 REG-2-like, H 96.8 0.0083 1.8E-07 46.1 7.8 88 43-134 108-201 (203)
28 cd01427 HAD_like Haloacid deha 96.8 0.023 5E-07 38.6 9.2 42 95-136 96-138 (139)
29 PRK13225 phosphoglycolate phos 96.7 0.027 5.8E-07 47.4 10.8 93 44-139 146-240 (273)
30 PLN02575 haloacid dehalogenase 96.6 0.02 4.4E-07 51.4 9.9 100 42-144 218-322 (381)
31 PLN02779 haloacid dehalogenase 96.3 0.055 1.2E-06 45.4 10.6 97 41-139 145-247 (286)
32 PRK06698 bifunctional 5'-methy 96.3 0.034 7.3E-07 49.4 9.5 90 46-139 336-428 (459)
33 PLN02940 riboflavin kinase 96.3 0.022 4.8E-07 50.0 8.1 92 45-139 98-195 (382)
34 PLN02811 hydrolase 96.3 0.032 6.9E-07 44.1 8.3 94 43-139 81-185 (220)
35 PRK13226 phosphoglycolate phos 96.2 0.063 1.4E-06 42.9 9.7 90 46-138 101-195 (229)
36 PRK10826 2-deoxyglucose-6-phos 96.2 0.039 8.4E-07 43.3 8.3 91 46-139 98-193 (222)
37 TIGR01549 HAD-SF-IA-v1 haloaci 96.0 0.073 1.6E-06 39.1 8.6 81 45-131 69-154 (154)
38 TIGR01685 MDP-1 magnesium-depe 96.0 0.077 1.7E-06 42.6 9.2 100 47-151 52-170 (174)
39 TIGR01489 DKMTPPase-SF 2,3-dik 95.9 0.064 1.4E-06 40.0 8.0 40 95-136 148-187 (188)
40 PRK10725 fructose-1-P/6-phosph 95.8 0.052 1.1E-06 41.0 7.3 78 59-138 104-186 (188)
41 PRK11587 putative phosphatase; 95.8 0.083 1.8E-06 41.6 8.7 93 45-141 88-185 (218)
42 PRK10748 flavin mononucleotide 95.7 0.057 1.2E-06 43.5 7.7 86 45-139 118-209 (238)
43 PRK13223 phosphoglycolate phos 95.7 0.093 2E-06 43.6 9.1 91 45-139 106-202 (272)
44 TIGR00338 serB phosphoserine p 95.5 0.1 2.3E-06 40.5 8.2 88 46-135 91-192 (219)
45 TIGR01662 HAD-SF-IIIA HAD-supe 95.2 0.23 5.1E-06 35.9 8.8 89 45-138 30-131 (132)
46 TIGR01691 enolase-ppase 2,3-di 95.1 0.19 4.2E-06 41.4 8.8 89 45-138 100-196 (220)
47 PRK06769 hypothetical protein; 94.9 0.35 7.7E-06 37.5 9.4 96 45-141 33-140 (173)
48 TIGR01491 HAD-SF-IB-PSPlk HAD- 94.6 0.25 5.3E-06 37.4 7.7 42 96-137 147-189 (201)
49 TIGR01548 HAD-SF-IA-hyp1 haloa 94.5 0.29 6.4E-06 37.8 8.1 81 46-129 112-196 (197)
50 PRK08942 D,D-heptose 1,7-bisph 94.2 0.64 1.4E-05 35.7 9.4 45 97-141 105-150 (181)
51 TIGR01261 hisB_Nterm histidino 94.0 0.48 1.1E-05 37.0 8.4 44 96-139 104-148 (161)
52 TIGR01672 AphA HAD superfamily 93.6 0.79 1.7E-05 38.5 9.6 113 15-138 93-211 (237)
53 TIGR01668 YqeG_hyp_ppase HAD s 93.6 0.91 2E-05 35.2 9.2 87 46-139 49-137 (170)
54 TIGR01460 HAD-SF-IIA Haloacid 93.4 0.1 2.2E-06 42.4 3.9 80 59-138 146-234 (236)
55 PLN02954 phosphoserine phospha 93.2 1.2 2.5E-05 34.8 9.3 40 95-135 154-193 (224)
56 TIGR00213 GmhB_yaeD D,D-heptos 93.0 0.98 2.1E-05 34.7 8.6 43 97-139 108-152 (176)
57 TIGR01681 HAD-SF-IIIC HAD-supe 92.9 0.95 2.1E-05 33.6 8.1 81 44-128 33-126 (128)
58 TIGR01664 DNA-3'-Pase DNA 3'-p 92.9 0.72 1.6E-05 36.0 7.7 86 46-134 48-158 (166)
59 PLN02919 haloacid dehalogenase 92.6 1.9 4.2E-05 43.1 12.1 99 41-142 162-266 (1057)
60 PRK09484 3-deoxy-D-manno-octul 92.3 0.96 2.1E-05 35.4 7.8 75 57-139 64-139 (183)
61 TIGR01656 Histidinol-ppas hist 92.1 2.1 4.6E-05 32.0 9.2 44 95-138 101-145 (147)
62 PF13242 Hydrolase_like: HAD-h 92.1 0.29 6.2E-06 33.0 4.1 42 98-139 7-50 (75)
63 TIGR01457 HAD-SF-IIA-hyp2 HAD- 91.3 0.3 6.5E-06 40.1 4.1 45 95-139 176-224 (249)
64 TIGR01458 HAD-SF-IIA-hyp3 HAD- 90.9 0.27 5.9E-06 40.6 3.6 80 60-139 139-225 (257)
65 TIGR01452 PGP_euk phosphoglyco 90.8 0.36 7.8E-06 40.0 4.1 97 41-139 144-248 (279)
66 TIGR02726 phenyl_P_delta pheny 90.4 1.3 2.9E-05 35.1 6.9 79 61-146 54-133 (169)
67 TIGR01490 HAD-SF-IB-hyp1 HAD-s 89.4 4.3 9.2E-05 31.0 8.8 92 44-137 91-197 (202)
68 TIGR01493 HAD-SF-IA-v2 Haloaci 88.8 0.53 1.1E-05 35.2 3.4 67 61-129 103-174 (175)
69 TIGR01670 YrbI-phosphatas 3-de 88.3 3 6.5E-05 31.8 7.3 86 48-141 36-122 (154)
70 COG0546 Gph Predicted phosphat 87.9 6.9 0.00015 31.2 9.4 96 41-139 90-190 (220)
71 PRK11009 aphA acid phosphatase 87.3 9.8 0.00021 32.0 10.4 88 45-139 119-212 (237)
72 PHA02530 pseT polynucleotide k 87.2 8.1 0.00017 31.7 9.7 93 42-138 189-296 (300)
73 PRK05446 imidazole glycerol-ph 86.5 4.4 9.6E-05 36.1 8.3 44 96-139 105-149 (354)
74 TIGR01487 SPP-like sucrose-pho 86.1 1.8 3.9E-05 33.9 5.1 85 61-146 110-198 (215)
75 PRK13582 thrH phosphoserine ph 85.1 8.7 0.00019 29.4 8.4 84 46-135 74-168 (205)
76 TIGR01459 HAD-SF-IIA-hyp4 HAD- 84.4 2 4.3E-05 34.7 4.7 93 44-138 142-241 (242)
77 PF13344 Hydrolase_6: Haloacid 83.9 4 8.7E-05 29.5 5.7 73 43-121 17-91 (101)
78 PRK11133 serB phosphoserine ph 83.2 12 0.00026 32.6 9.4 50 95-145 247-297 (322)
79 PLN02645 phosphoglycolate phos 82.9 1.9 4.2E-05 36.6 4.2 80 58-139 187-276 (311)
80 TIGR01484 HAD-SF-IIB HAD-super 82.8 2.5 5.4E-05 32.5 4.5 42 93-134 160-202 (204)
81 PRK01158 phosphoglycolate phos 81.6 3.2 6.9E-05 32.4 4.8 52 94-145 155-207 (230)
82 COG5439 Uncharacterized conser 81.0 0.97 2.1E-05 35.0 1.6 40 104-154 72-111 (112)
83 cd01973 Nitrogenase_VFe_beta_l 80.7 11 0.00024 34.2 8.6 76 61-139 309-407 (454)
84 PF00702 Hydrolase: haloacid d 80.5 11 0.00024 28.3 7.2 80 46-131 133-215 (215)
85 PRK05749 3-deoxy-D-manno-octul 79.1 4.8 0.0001 34.5 5.4 53 99-152 251-322 (425)
86 PF12689 Acid_PPase: Acid Phos 78.7 26 0.00056 28.2 9.2 101 46-151 51-164 (169)
87 TIGR03492 conserved hypothetic 78.3 15 0.00032 32.5 8.3 113 15-136 57-184 (396)
88 cd04951 GT1_WbdM_like This fam 78.0 7.5 0.00016 30.8 5.9 54 98-152 207-265 (360)
89 TIGR01482 SPP-subfamily Sucros 77.0 5.5 0.00012 30.8 4.7 53 94-146 147-200 (225)
90 cd03812 GT1_CapH_like This fam 76.0 10 0.00022 30.3 6.1 54 98-152 211-269 (358)
91 PF12710 HAD: haloacid dehalog 74.1 23 0.00049 26.4 7.3 33 96-128 157-192 (192)
92 PLN02846 digalactosyldiacylgly 73.9 9.1 0.0002 35.3 6.0 52 99-151 248-302 (462)
93 TIGR03087 stp1 sugar transfera 73.8 11 0.00023 32.0 6.0 50 99-151 248-299 (397)
94 TIGR03088 stp2 sugar transfera 73.3 12 0.00027 30.7 6.2 54 99-152 214-275 (374)
95 PF06506 PrpR_N: Propionate ca 73.2 3.8 8.3E-05 32.0 3.0 50 97-150 111-160 (176)
96 PF02350 Epimerase_2: UDP-N-ac 73.1 25 0.00054 30.6 8.2 81 58-140 10-100 (346)
97 TIGR02137 HSK-PSP phosphoserin 72.3 43 0.00093 27.0 9.0 86 46-137 74-170 (203)
98 PF00448 SRP54: SRP54-type pro 70.7 20 0.00044 28.8 6.7 62 90-151 7-77 (196)
99 TIGR01488 HAD-SF-IB Haloacid D 70.4 35 0.00075 25.2 7.5 36 94-129 140-176 (177)
100 PF14824 Sirohm_synth_M: Siroh 69.6 6.4 0.00014 24.2 2.8 23 55-77 1-23 (30)
101 PF09949 DUF2183: Uncharacteri 69.3 5 0.00011 29.9 2.7 55 67-122 11-75 (100)
102 PF13692 Glyco_trans_1_4: Glyc 69.3 3.6 7.9E-05 28.9 1.9 50 100-152 24-73 (135)
103 PLN02275 transferase, transfer 69.0 11 0.00023 32.1 5.1 44 109-152 259-309 (371)
104 smart00577 CPDc catalytic doma 68.5 9.8 0.00021 28.7 4.2 72 61-134 64-138 (148)
105 PRK09552 mtnX 2-hydroxy-3-keto 68.0 34 0.00074 27.0 7.4 37 100-136 148-185 (219)
106 PRK10307 putative glycosyl tra 67.5 5.8 0.00013 33.6 3.1 43 110-152 258-306 (412)
107 cd03811 GT1_WabH_like This fam 67.4 20 0.00044 27.2 5.8 51 100-151 210-265 (353)
108 cd03819 GT1_WavL_like This fam 67.1 17 0.00036 29.0 5.5 54 98-152 204-266 (355)
109 cd03817 GT1_UGDG_like This fam 67.0 15 0.00032 28.6 5.0 53 98-151 221-280 (374)
110 TIGR01686 FkbH FkbH-like domai 66.5 49 0.0011 28.1 8.6 80 45-130 36-122 (320)
111 cd03807 GT1_WbnK_like This fam 66.1 18 0.0004 27.8 5.4 52 99-151 213-270 (365)
112 PRK10444 UMP phosphatase; Prov 64.8 16 0.00036 30.3 5.2 45 95-139 172-220 (248)
113 PRK07774 short chain dehydroge 64.3 40 0.00087 26.0 7.0 34 87-120 152-186 (250)
114 TIGR01456 CECR5 HAD-superfamil 64.3 37 0.00079 29.1 7.4 82 41-131 17-104 (321)
115 TIGR00099 Cof-subfamily Cof su 63.9 16 0.00035 29.2 4.9 53 93-145 185-238 (256)
116 PTZ00225 60S ribosomal protein 63.9 9.3 0.0002 31.9 3.6 34 109-146 57-90 (214)
117 TIGR02471 sucr_syn_bact_C sucr 63.0 13 0.00028 29.5 4.2 53 94-146 157-210 (236)
118 TIGR01283 nifE nitrogenase mol 62.7 1.2E+02 0.0026 27.4 12.2 115 18-139 276-421 (456)
119 TIGR01485 SPP_plant-cyano sucr 62.7 19 0.00042 29.0 5.2 54 93-146 164-219 (249)
120 TIGR00655 PurU formyltetrahydr 62.6 19 0.00041 31.0 5.4 44 96-139 93-140 (280)
121 cd01966 Nitrogenase_NifN_1 Nit 62.6 39 0.00085 30.2 7.5 70 61-139 304-386 (417)
122 PRK05800 cobU adenosylcobinami 62.5 11 0.00025 29.6 3.7 40 89-128 6-45 (170)
123 PF00072 Response_reg: Respons 62.1 30 0.00064 23.1 5.3 55 95-150 56-111 (112)
124 cd03794 GT1_wbuB_like This fam 62.1 24 0.00053 27.3 5.4 52 99-152 240-297 (394)
125 cd01980 Chlide_reductase_Y Chl 61.7 46 0.001 29.6 7.8 75 62-139 285-376 (416)
126 PF08282 Hydrolase_3: haloacid 61.5 19 0.00041 27.2 4.6 54 92-145 182-236 (254)
127 PRK08238 hypothetical protein; 61.1 1E+02 0.0022 28.6 10.1 103 31-143 63-170 (479)
128 cd03813 GT1_like_3 This family 60.8 34 0.00073 30.4 6.8 53 99-152 313-373 (475)
129 cd00027 BRCT Breast Cancer Sup 59.9 19 0.00041 21.6 3.7 39 99-137 16-64 (72)
130 TIGR01286 nifK nitrogenase mol 59.7 79 0.0017 29.6 9.2 73 61-139 367-463 (515)
131 cd03822 GT1_ecORF704_like This 59.6 14 0.0003 29.1 3.7 53 98-151 204-269 (366)
132 cd03820 GT1_amsD_like This fam 59.3 33 0.00071 26.2 5.6 52 100-152 199-255 (348)
133 cd05844 GT1_like_7 Glycosyltra 58.6 18 0.00038 29.2 4.3 50 102-152 211-267 (367)
134 cd03814 GT1_like_2 This family 58.0 16 0.00034 28.6 3.8 52 99-152 217-269 (364)
135 PF10881 DUF2726: Protein of u 57.9 40 0.00086 24.7 5.7 48 104-151 49-123 (126)
136 cd01971 Nitrogenase_VnfN_like 57.7 1.1E+02 0.0024 27.2 9.5 78 61-139 297-397 (427)
137 PRK10530 pyridoxal phosphate ( 57.2 24 0.00052 28.1 4.8 50 94-143 197-247 (272)
138 PRK13010 purU formyltetrahydro 57.2 23 0.0005 30.7 5.0 44 96-139 102-149 (289)
139 cd06578 HemD Uroporphyrinogen- 56.0 29 0.00063 26.5 4.9 39 109-149 200-238 (239)
140 PRK08642 fabG 3-ketoacyl-(acyl 55.9 93 0.002 24.0 9.4 61 87-147 156-228 (253)
141 PLN02501 digalactosyldiacylgly 55.2 30 0.00065 34.7 5.9 52 100-152 567-621 (794)
142 PRK13011 formyltetrahydrofolat 55.1 26 0.00056 30.3 4.9 44 96-139 98-145 (286)
143 PRK08811 uroporphyrinogen-III 54.4 29 0.00063 29.2 5.1 40 110-151 218-257 (266)
144 PF00533 BRCT: BRCA1 C Terminu 54.4 15 0.00034 23.4 2.7 30 109-138 40-72 (78)
145 PF05762 VWA_CoxE: VWA domain 54.4 49 0.0011 26.9 6.2 31 89-121 126-160 (222)
146 CHL00076 chlB photochlorophyll 54.2 1.2E+02 0.0025 28.3 9.3 76 61-138 309-399 (513)
147 PRK05717 oxidoreductase; Valid 54.1 68 0.0015 25.2 6.8 36 85-120 152-187 (255)
148 PRK15427 colanic acid biosynth 53.8 25 0.00055 30.6 4.8 52 100-152 243-301 (406)
149 cd06578 HemD Uroporphyrinogen- 53.5 33 0.00072 26.2 4.9 65 85-151 49-116 (239)
150 TIGR01862 N2-ase-Ialpha nitrog 53.4 1.7E+02 0.0038 26.4 10.7 117 19-139 271-413 (443)
151 PRK09134 short chain dehydroge 53.3 54 0.0012 25.8 6.2 36 85-120 154-189 (258)
152 cd02970 PRX_like2 Peroxiredoxi 53.1 43 0.00093 23.9 5.1 49 101-151 46-97 (149)
153 PLN02871 UDP-sulfoquinovose:DA 53.1 26 0.00056 30.8 4.7 57 96-152 273-334 (465)
154 PRK02910 light-independent pro 53.1 1.1E+02 0.0025 28.2 9.0 75 61-139 297-388 (519)
155 TIGR02932 vnfK_nitrog V-contai 52.8 1.8E+02 0.0039 26.6 10.2 23 116-139 388-410 (457)
156 PRK05752 uroporphyrinogen-III 52.8 37 0.00079 27.7 5.3 40 110-151 209-248 (255)
157 smart00292 BRCT breast cancer 52.6 6.7 0.00014 24.3 0.8 28 111-138 41-71 (80)
158 PRK05424 rplA 50S ribosomal pr 52.5 18 0.00039 30.4 3.5 27 108-135 68-94 (230)
159 cd03821 GT1_Bme6_like This fam 51.6 23 0.0005 27.4 3.7 23 99-122 223-245 (375)
160 KOG1099|consensus 51.2 17 0.00037 32.3 3.2 44 78-121 80-124 (294)
161 cd01981 Pchlide_reductase_B Pc 50.1 1.8E+02 0.004 25.7 9.8 74 61-139 305-396 (430)
162 cd05015 SIS_PGI_1 Phosphogluco 49.9 24 0.00051 27.2 3.6 41 99-139 91-138 (158)
163 cd03798 GT1_wlbH_like This fam 49.8 34 0.00073 26.2 4.3 52 99-151 222-280 (377)
164 PLN02828 formyltetrahydrofolat 49.7 33 0.00072 29.7 4.8 44 96-139 79-131 (268)
165 PRK15490 Vi polysaccharide bio 49.7 46 0.00099 32.1 6.1 53 99-152 418-475 (578)
166 PRK10513 sugar phosphate phosp 49.1 41 0.00088 27.0 4.9 52 94-145 194-246 (270)
167 TIGR00639 PurN phosphoribosylg 49.1 42 0.00091 27.2 5.0 44 96-139 9-58 (190)
168 cd01968 Nitrogenase_NifE_I Nit 49.0 1.7E+02 0.0036 25.8 9.1 116 18-139 237-382 (410)
169 TIGR03333 salvage_mtnX 2-hydro 49.0 26 0.00055 27.7 3.7 37 100-136 144-181 (214)
170 cd03805 GT1_ALG2_like This fam 48.9 38 0.00081 27.9 4.8 25 98-122 230-256 (392)
171 PRK14477 bifunctional nitrogen 48.7 2.6E+02 0.0056 28.1 11.2 89 45-139 307-415 (917)
172 PF07261 DnaB_2: Replication i 48.3 25 0.00053 23.3 3.0 40 7-47 1-40 (77)
173 PF02602 HEM4: Uroporphyrinoge 48.1 49 0.0011 25.8 5.1 46 99-146 178-229 (231)
174 COG4850 Uncharacterized conser 47.8 33 0.00071 31.6 4.6 75 58-133 215-302 (373)
175 TIGR01169 rplA_bact ribosomal 47.7 24 0.00051 29.7 3.5 27 108-135 67-93 (227)
176 PRK06483 dihydromonapterin red 46.9 1.3E+02 0.0029 23.2 9.6 36 85-120 143-178 (236)
177 cd03801 GT1_YqgM_like This fam 46.9 65 0.0014 24.4 5.5 52 99-151 219-277 (374)
178 TIGR02329 propionate_PrpR prop 46.8 29 0.00063 32.5 4.2 25 115-140 148-172 (526)
179 cd03792 GT1_Trehalose_phosphor 46.8 50 0.0011 27.5 5.3 54 98-152 209-276 (372)
180 PRK15484 lipopolysaccharide 1, 46.7 73 0.0016 27.2 6.4 53 99-152 213-279 (380)
181 TIGR00236 wecB UDP-N-acetylglu 46.6 1.7E+02 0.0038 24.4 9.2 77 58-137 30-116 (365)
182 PF07728 AAA_5: AAA domain (dy 46.1 32 0.00069 24.8 3.6 39 89-127 4-42 (139)
183 cd03808 GT1_cap1E_like This fa 46.0 58 0.0013 24.9 5.1 43 109-151 217-265 (359)
184 PRK10976 putative hydrolase; P 45.8 44 0.00094 26.8 4.6 54 93-146 187-241 (266)
185 TIGR01285 nifN nitrogenase mol 45.8 2.3E+02 0.005 25.6 11.5 74 61-139 315-399 (432)
186 PRK05749 3-deoxy-D-manno-octul 45.5 2E+02 0.0043 24.7 10.1 82 48-140 69-156 (425)
187 cd03799 GT1_amsK_like This is 45.2 36 0.00078 26.9 4.0 52 99-151 199-257 (355)
188 PRK05993 short chain dehydroge 44.7 1.3E+02 0.0029 24.1 7.3 82 27-120 97-179 (277)
189 PRK08674 bifunctional phosphog 44.5 2E+02 0.0044 24.6 8.9 115 26-141 164-293 (337)
190 PF02283 CobU: Cobinamide kina 44.3 24 0.00052 28.0 2.9 41 89-129 3-43 (167)
191 cd04962 GT1_like_5 This family 44.0 75 0.0016 25.7 5.7 42 110-151 226-272 (371)
192 smart00775 LNS2 LNS2 domain. T 43.8 37 0.00081 26.3 3.8 42 96-137 102-145 (157)
193 PF01715 IPPT: IPP transferase 43.8 47 0.001 27.9 4.7 87 39-152 39-131 (253)
194 PF04118 Dopey_N: Dopey, N-ter 43.7 17 0.00038 31.9 2.2 84 7-110 4-88 (307)
195 TIGR01533 lipo_e_P4 5'-nucleot 43.5 1E+02 0.0022 26.5 6.7 79 41-124 119-201 (266)
196 cd02008 TPP_IOR_alpha Thiamine 43.2 72 0.0016 24.7 5.4 31 120-150 130-160 (178)
197 TIGR01170 rplA_mito ribosomal 42.9 37 0.0008 26.7 3.7 27 108-134 49-75 (141)
198 PRK06398 aldose dehydrogenase; 42.9 1.7E+02 0.0037 23.2 7.7 37 85-121 139-175 (258)
199 cd02967 mauD Methylamine utili 42.8 61 0.0013 22.3 4.5 33 101-133 43-77 (114)
200 PRK03957 V-type ATP synthase s 42.0 1.1E+02 0.0024 22.4 5.9 68 43-111 30-97 (100)
201 cd03816 GT1_ALG1_like This fam 41.1 38 0.00082 29.4 3.8 55 98-152 251-317 (415)
202 PRK14098 glycogen synthase; Pr 41.0 53 0.0011 29.9 4.9 43 110-152 335-384 (489)
203 COG0637 Predicted phosphatase/ 40.9 1.9E+02 0.0041 23.3 8.6 92 45-139 91-187 (221)
204 PRK14476 nitrogenase molybdenu 40.6 2.9E+02 0.0062 25.2 10.6 70 61-139 315-397 (455)
205 TIGR02463 MPGP_rel mannosyl-3- 40.4 79 0.0017 24.6 5.2 41 94-134 177-218 (221)
206 cd01977 Nitrogenase_VFe_alpha 40.3 2.7E+02 0.0058 24.7 10.3 115 19-139 242-384 (415)
207 PF13911 AhpC-TSA_2: AhpC/TSA 40.1 50 0.0011 23.5 3.8 47 105-153 6-55 (115)
208 TIGR00250 RNAse_H_YqgF RNAse H 39.8 24 0.00053 26.9 2.2 55 84-140 23-92 (130)
209 KOG0767|consensus 39.2 14 0.00031 33.3 1.0 34 97-135 207-241 (333)
210 cd04121 Rab40 Rab40 subfamily. 38.9 43 0.00094 26.3 3.6 56 83-141 85-151 (189)
211 TIGR01486 HAD-SF-IIB-MPGP mann 38.9 65 0.0014 26.0 4.7 49 93-141 173-224 (256)
212 PRK04203 rpl1P 50S ribosomal p 38.4 42 0.00092 27.7 3.6 38 108-148 55-92 (215)
213 PF09744 Jnk-SapK_ap_N: JNK_SA 38.4 12 0.00025 30.2 0.3 18 93-112 6-23 (158)
214 TIGR01459 HAD-SF-IIA-hyp4 HAD- 38.3 1.4E+02 0.0031 23.9 6.6 75 44-121 28-105 (242)
215 PRK10538 malonic semialdehyde 38.3 1.9E+02 0.0042 22.6 7.8 84 26-121 95-179 (248)
216 cd03806 GT1_ALG11_like This fa 38.0 88 0.0019 27.4 5.7 54 98-151 256-326 (419)
217 PRK07231 fabG 3-ketoacyl-(acyl 37.9 1.8E+02 0.004 22.2 8.3 61 85-145 149-224 (251)
218 TIGR01278 DPOR_BchB light-inde 37.8 67 0.0014 29.6 5.1 78 61-139 299-390 (511)
219 TIGR03568 NeuC_NnaA UDP-N-acet 37.6 2.4E+02 0.0052 24.5 8.3 81 58-139 30-125 (365)
220 PRK05765 precorrin-3B C17-meth 37.6 73 0.0016 26.3 4.9 47 102-149 63-117 (246)
221 PTZ00175 diphthine synthase; P 37.6 1.2E+02 0.0026 26.0 6.3 43 96-138 62-111 (270)
222 CHL00129 rpl1 ribosomal protei 37.4 42 0.00092 28.3 3.5 27 108-135 68-94 (229)
223 cd04949 GT1_gtfA_like This fam 37.3 1.2E+02 0.0027 24.8 6.1 52 100-152 225-281 (372)
224 PLN02331 phosphoribosylglycina 37.2 49 0.0011 27.3 3.8 45 96-140 8-58 (207)
225 PRK14454 ribosomal RNA large s 37.0 86 0.0019 27.7 5.5 33 44-76 166-202 (342)
226 TIGR02918 accessory Sec system 37.0 1.1E+02 0.0025 28.0 6.4 52 99-151 339-394 (500)
227 PRK05928 hemD uroporphyrinogen 37.0 71 0.0015 24.8 4.5 39 111-151 207-245 (249)
228 cd03823 GT1_ExpE7_like This fa 36.9 66 0.0014 25.0 4.3 43 110-152 219-265 (359)
229 PRK06181 short chain dehydroge 36.9 1.6E+02 0.0035 23.0 6.5 82 27-121 100-182 (263)
230 PF00534 Glycos_transf_1: Glyc 36.6 1.1E+02 0.0025 22.0 5.3 53 99-151 35-94 (172)
231 PRK00750 lysK lysyl-tRNA synth 36.5 1.1E+02 0.0023 28.6 6.2 64 61-138 25-99 (510)
232 PF05991 NYN_YacP: YacP-like N 35.8 98 0.0021 24.4 5.1 95 39-139 21-120 (166)
233 PRK00192 mannosyl-3-phosphogly 35.6 89 0.0019 25.6 5.0 49 96-144 190-240 (273)
234 PRK06077 fabG 3-ketoacyl-(acyl 35.4 1.8E+02 0.004 22.3 6.5 37 84-120 148-184 (252)
235 COG0626 MetC Cystathionine bet 35.4 1.9E+02 0.0041 26.5 7.5 52 83-138 105-156 (396)
236 PRK01372 ddl D-alanine--D-alan 35.3 1.4E+02 0.003 24.5 6.1 39 96-135 98-137 (304)
237 KOG1111|consensus 35.2 58 0.0013 30.5 4.2 31 109-139 224-259 (426)
238 TIGR02400 trehalose_OtsA alpha 34.8 1.1E+02 0.0025 27.7 6.0 56 97-152 277-358 (456)
239 cd01338 MDH_choloroplast_like 34.8 56 0.0012 28.5 3.9 74 46-122 108-187 (322)
240 PF06348 DUF1059: Protein of u 34.8 30 0.00066 23.2 1.8 32 108-139 9-41 (57)
241 CHL00073 chlN photochlorophyll 34.7 86 0.0019 29.2 5.3 41 99-139 87-136 (457)
242 cd00496 PheRS_alpha_core Pheny 34.6 33 0.00072 27.7 2.4 48 66-119 64-113 (218)
243 cd03804 GT1_wbaZ_like This fam 34.3 99 0.0021 25.2 5.1 57 95-151 204-263 (351)
244 PRK15179 Vi polysaccharide bio 34.3 89 0.0019 30.4 5.5 52 100-152 538-594 (694)
245 COG4229 Predicted enolase-phos 34.2 74 0.0016 27.5 4.4 77 58-136 119-202 (229)
246 PTZ00029 60S ribosomal protein 34.1 55 0.0012 27.2 3.6 34 109-146 59-92 (216)
247 COG0695 GrxC Glutaredoxin and 34.1 1.6E+02 0.0034 20.4 5.9 51 102-152 18-79 (80)
248 PRK09189 uroporphyrinogen-III 34.0 83 0.0018 25.2 4.5 40 110-151 199-238 (240)
249 cd00568 TPP_enzymes Thiamine p 34.0 72 0.0016 23.5 3.9 84 58-142 13-101 (168)
250 TIGR01182 eda Entner-Doudoroff 33.9 1.2E+02 0.0026 25.2 5.5 54 95-153 44-101 (204)
251 PRK14462 ribosomal RNA large s 33.9 1.3E+02 0.0028 27.0 6.1 84 44-129 178-283 (356)
252 PF01248 Ribosomal_L7Ae: Ribos 33.8 44 0.00096 23.2 2.6 46 95-143 18-70 (95)
253 COG0561 Cof Predicted hydrolas 33.7 71 0.0015 25.6 4.1 52 95-146 188-240 (264)
254 cd00544 CobU Adenosylcobinamid 33.7 79 0.0017 24.9 4.3 40 89-128 4-43 (169)
255 TIGR03325 BphB_TodD cis-2,3-di 33.6 1.4E+02 0.003 23.6 5.7 34 87-120 152-185 (262)
256 PRK07478 short chain dehydroge 33.6 2.3E+02 0.005 22.1 7.9 82 29-121 107-189 (254)
257 PRK03868 glucose-6-phosphate i 33.5 69 0.0015 29.1 4.4 47 92-138 118-173 (410)
258 PF10766 DUF2592: Protein of u 33.4 14 0.0003 24.3 -0.0 20 71-93 17-36 (41)
259 PRK06027 purU formyltetrahydro 33.3 86 0.0019 27.0 4.8 45 96-140 98-146 (286)
260 PRK14729 miaA tRNA delta(2)-is 33.2 1.8E+02 0.004 25.5 6.8 63 39-105 75-143 (300)
261 PRK00061 ribH 6,7-dimethyl-8-r 32.7 2.6E+02 0.0055 22.3 8.5 112 36-152 25-146 (154)
262 PRK09496 trkA potassium transp 32.7 1.6E+02 0.0035 25.5 6.4 48 96-143 212-266 (453)
263 cd01974 Nitrogenase_MoFe_beta 32.7 3.7E+02 0.0079 24.1 11.1 76 61-139 307-403 (435)
264 PRK09288 purT phosphoribosylgl 32.5 1.5E+02 0.0033 25.2 6.2 71 60-135 78-153 (395)
265 PTZ00445 p36-lilke protein; Pr 32.2 56 0.0012 28.1 3.4 71 72-142 119-209 (219)
266 KOG3086|consensus 32.2 78 0.0017 28.4 4.3 51 67-119 133-187 (296)
267 PRK08265 short chain dehydroge 31.7 2.6E+02 0.0057 22.1 7.4 34 87-120 147-181 (261)
268 cd02007 TPP_DXS Thiamine pyrop 31.6 70 0.0015 25.6 3.8 12 110-121 97-108 (195)
269 PRK06063 DNA polymerase III su 31.5 39 0.00085 29.3 2.4 37 110-149 268-307 (313)
270 COG0714 MoxR-like ATPases [Gen 31.5 29 0.00062 29.5 1.6 23 123-145 60-82 (329)
271 TIGR00685 T6PP trehalose-phosp 31.4 98 0.0021 25.1 4.6 44 94-137 165-216 (244)
272 PRK10463 hydrogenase nickel in 31.4 1.9E+02 0.0041 25.4 6.6 65 87-151 107-178 (290)
273 PRK08063 enoyl-(acyl carrier p 31.3 2.3E+02 0.005 21.8 6.5 76 33-120 109-185 (250)
274 PF13905 Thioredoxin_8: Thiore 31.3 1.3E+02 0.0029 19.9 4.6 45 98-142 20-69 (95)
275 cd03825 GT1_wcfI_like This fam 31.3 48 0.001 26.3 2.7 27 100-126 214-240 (365)
276 PRK00025 lpxB lipid-A-disaccha 31.3 1.8E+02 0.004 24.2 6.3 48 102-152 212-264 (380)
277 TIGR01512 ATPase-IB2_Cd heavy 31.2 2.5E+02 0.0055 25.8 7.7 64 61-133 383-447 (536)
278 COG5275 BRCT domain type II [G 31.0 72 0.0016 28.2 3.9 34 102-135 177-220 (276)
279 cd01861 Rab6 Rab6 subfamily. 31.0 1.9E+02 0.0041 20.5 5.6 52 99-150 93-157 (161)
280 PRK14464 ribosomal RNA large s 30.9 1.8E+02 0.004 26.1 6.5 80 43-124 158-260 (344)
281 cd01965 Nitrogenase_MoFe_beta_ 30.9 3.8E+02 0.0083 23.8 11.2 75 61-139 303-397 (428)
282 PF08734 GYD: GYD domain; Int 30.9 53 0.0011 23.6 2.7 34 97-130 21-64 (91)
283 cd01339 LDH-like_MDH L-lactate 30.7 2.1E+02 0.0046 24.0 6.6 53 97-150 95-152 (300)
284 PF00145 DNA_methylase: C-5 cy 30.5 87 0.0019 25.2 4.1 43 66-108 88-130 (335)
285 PRK07577 short chain dehydroge 30.4 2.2E+02 0.0047 21.7 6.2 34 87-120 136-170 (234)
286 cd03073 PDI_b'_ERp72_ERp57 PDI 30.4 1.2E+02 0.0026 22.3 4.6 43 99-142 38-88 (111)
287 PRK15126 thiamin pyrimidine py 30.4 1.2E+02 0.0025 24.6 4.8 53 93-145 185-238 (272)
288 TIGR01460 HAD-SF-IIA Haloacid 29.9 1.4E+02 0.0029 24.3 5.2 85 42-133 16-102 (236)
289 PRK07889 enoyl-(acyl carrier p 29.8 2.2E+02 0.0047 22.7 6.3 81 26-121 109-190 (256)
290 TIGR01650 PD_CobS cobaltochela 29.7 33 0.00072 30.6 1.7 21 125-145 83-103 (327)
291 cd00009 AAA The AAA+ (ATPases 29.5 1.2E+02 0.0026 20.3 4.1 33 88-120 23-58 (151)
292 TIGR01525 ATPase-IB_hvy heavy 29.4 3.3E+02 0.0071 25.1 8.1 37 95-134 434-470 (556)
293 PF04839 PSRP-3_Ycf65: Plastid 29.4 36 0.00078 23.1 1.5 24 22-47 8-31 (49)
294 PRK14455 ribosomal RNA large s 29.3 1.4E+02 0.0029 26.6 5.4 34 43-76 176-213 (356)
295 PRK06997 enoyl-(acyl carrier p 29.3 3E+02 0.0065 22.0 8.5 37 85-121 154-191 (260)
296 cd03795 GT1_like_4 This family 28.8 71 0.0015 25.3 3.3 41 111-151 218-265 (357)
297 PRK03669 mannosyl-3-phosphogly 28.8 1.3E+02 0.0027 24.6 4.9 45 93-137 184-232 (271)
298 PRK09437 bcp thioredoxin-depen 28.7 1.1E+02 0.0023 22.6 4.1 37 101-137 53-92 (154)
299 PF10551 MULE: MULE transposas 28.7 88 0.0019 21.0 3.4 38 99-137 44-81 (93)
300 KOG3798|consensus 28.4 37 0.00079 30.7 1.7 32 89-121 233-265 (343)
301 PF14285 DUF4367: Domain of un 28.4 93 0.002 23.1 3.7 48 95-142 25-72 (168)
302 PRK14099 glycogen synthase; Pr 28.4 1.5E+02 0.0033 26.9 5.7 49 100-151 316-371 (485)
303 TIGR01068 thioredoxin thioredo 28.3 80 0.0017 20.6 3.0 33 99-132 34-66 (101)
304 PRK05866 short chain dehydroge 28.3 3.4E+02 0.0074 22.3 7.7 83 26-119 139-222 (293)
305 PF09419 PGP_phosphatase: Mito 28.1 62 0.0013 26.2 2.9 39 97-135 116-162 (168)
306 cd01133 F1-ATPase_beta F1 ATP 28.0 71 0.0015 27.8 3.4 44 80-123 60-112 (274)
307 KOG1089|consensus 28.0 1.1E+02 0.0023 29.8 4.8 40 38-77 319-369 (573)
308 cd03017 PRX_BCP Peroxiredoxin 28.0 2.2E+02 0.0048 20.1 5.5 16 103-118 48-64 (140)
309 cd00674 LysRS_core_class_I cat 27.9 1.2E+02 0.0026 27.2 4.9 64 60-137 20-92 (353)
310 cd04950 GT1_like_1 Glycosyltra 27.6 60 0.0013 27.5 2.9 52 100-152 222-276 (373)
311 cd04175 Rap1 Rap1 subgroup. T 27.5 2.2E+02 0.0047 20.5 5.5 91 58-150 50-158 (164)
312 PRK13394 3-hydroxybutyrate deh 27.4 2.9E+02 0.0063 21.3 7.3 79 31-120 109-188 (262)
313 PRK04148 hypothetical protein; 27.2 2.2E+02 0.0047 22.3 5.7 45 99-143 3-51 (134)
314 PRK08251 short chain dehydroge 27.2 2.9E+02 0.0064 21.3 7.6 35 87-121 151-186 (248)
315 PRK09533 bifunctional transald 27.1 90 0.002 31.8 4.4 36 98-133 524-566 (948)
316 KOG3996|consensus 27.1 50 0.0011 29.0 2.3 46 101-151 196-242 (256)
317 PRK08339 short chain dehydroge 27.0 3.3E+02 0.0071 21.8 7.2 82 24-120 106-188 (263)
318 COG0788 PurU Formyltetrahydrof 27.0 73 0.0016 28.5 3.3 44 99-142 102-149 (287)
319 PRK05576 cobalt-precorrin-2 C( 26.8 2.7E+02 0.0059 22.4 6.4 39 99-137 78-124 (229)
320 PF00381 PTS-HPr: PTS HPr comp 26.8 32 0.0007 23.8 0.9 21 108-130 57-77 (84)
321 TIGR01861 ANFD nitrogenase iro 26.7 5.4E+02 0.012 24.2 9.5 115 19-138 282-423 (513)
322 cd01467 vWA_BatA_type VWA BatA 26.6 2.6E+02 0.0057 20.7 5.9 43 99-141 91-142 (180)
323 PRK05786 fabG 3-ketoacyl-(acyl 26.3 3E+02 0.0064 21.0 7.0 36 85-120 145-181 (238)
324 PF08080 zf-RNPHF: RNPHF zinc 26.2 22 0.00048 22.8 0.0 13 106-118 4-16 (36)
325 PF01890 CbiG_C: Cobalamin syn 25.9 1.2E+02 0.0027 22.8 4.0 42 98-139 18-66 (121)
326 PF00456 Transketolase_N: Tran 25.8 29 0.00063 30.7 0.7 31 2-34 282-312 (332)
327 cd04405 RhoGAP_BRCC3-like RhoG 25.5 43 0.00094 29.0 1.6 16 37-52 67-82 (235)
328 COG2390 DeoR Transcriptional r 25.3 57 0.0012 28.9 2.4 27 102-128 72-98 (321)
329 cd04108 Rab36_Rab34 Rab34/Rab3 25.3 1.9E+02 0.0041 21.7 5.0 51 99-149 90-159 (170)
330 PRK14465 ribosomal RNA large s 25.2 3.7E+02 0.008 24.0 7.4 79 44-122 170-268 (342)
331 COG1778 Low specificity phosph 25.0 58 0.0013 27.1 2.2 49 96-144 83-132 (170)
332 PLN00164 glucosyltransferase; 25.0 1.5E+02 0.0033 27.1 5.1 44 97-140 259-311 (480)
333 TIGR01251 ribP_PPkin ribose-ph 24.9 1.4E+02 0.003 25.7 4.7 51 85-140 139-191 (308)
334 TIGR03849 arch_ComA phosphosul 24.9 1.7E+02 0.0037 25.2 5.1 73 36-114 131-211 (237)
335 PF07023 DUF1315: Protein of u 24.9 46 0.00099 25.1 1.5 31 2-32 7-44 (93)
336 PRK08351 DNA-directed RNA poly 24.8 67 0.0015 22.4 2.2 18 114-132 33-50 (61)
337 PF00148 Oxidored_nitro: Nitro 24.7 4.5E+02 0.0098 22.6 9.0 24 115-139 344-367 (398)
338 PF09364 XFP_N: XFP N-terminal 24.7 38 0.00083 31.2 1.2 25 112-136 160-186 (379)
339 COG0376 KatG Catalase (peroxid 24.5 94 0.002 30.7 3.8 40 98-137 513-559 (730)
340 TIGR01284 alt_nitrog_alph nitr 24.4 5.5E+02 0.012 23.4 9.8 113 19-139 279-421 (457)
341 PF10087 DUF2325: Uncharacteri 24.3 99 0.0022 21.8 3.1 29 122-151 66-94 (97)
342 TIGR03649 ergot_EASG ergot alk 24.2 2.8E+02 0.006 22.2 6.0 68 71-139 173-243 (285)
343 TIGR01338 phycocy_alpha phycoc 24.0 23 0.00049 28.8 -0.3 52 68-120 50-103 (161)
344 cd02966 TlpA_like_family TlpA- 24.0 1.8E+02 0.004 18.7 4.2 23 99-121 39-62 (116)
345 TIGR01465 cobM_cbiF precorrin- 24.0 3.1E+02 0.0068 21.7 6.2 39 96-134 56-102 (229)
346 TIGR02014 BchZ chlorophyllide 23.9 2.1E+02 0.0046 26.5 5.9 78 58-140 280-361 (468)
347 PRK06463 fabG 3-ketoacyl-(acyl 23.9 3.6E+02 0.0077 21.1 9.5 36 85-120 147-183 (255)
348 PRK00973 glucose-6-phosphate i 23.9 1.3E+02 0.0029 27.8 4.6 41 98-138 149-196 (446)
349 cd03788 GT1_TPS Trehalose-6-Ph 23.9 1.7E+02 0.0037 26.2 5.2 56 97-152 282-363 (460)
350 PF07733 DNA_pol3_alpha: Bacte 23.8 87 0.0019 28.7 3.3 110 23-135 20-156 (426)
351 PRK13780 phosphocarrier protei 23.8 67 0.0015 23.1 2.1 32 99-130 46-77 (88)
352 PF04123 DUF373: Domain of unk 23.6 81 0.0018 28.4 3.0 87 42-148 50-143 (344)
353 PRK12823 benD 1,6-dihydroxycyc 23.5 3.6E+02 0.0078 21.0 7.1 32 87-118 152-184 (260)
354 cd02011 TPP_PK Thiamine pyroph 23.3 56 0.0012 27.8 1.9 15 111-125 81-95 (227)
355 PF13479 AAA_24: AAA domain 23.2 1.2E+02 0.0026 24.3 3.7 55 89-150 8-62 (213)
356 cd01450 vWFA_subfamily_ECM Von 23.2 1.4E+02 0.003 21.1 3.7 51 98-148 87-150 (161)
357 cd01454 vWA_norD_type norD typ 23.2 1.4E+02 0.0031 22.4 3.9 45 99-143 88-154 (174)
358 COG4221 Short-chain alcohol de 23.1 5.1E+02 0.011 22.6 8.4 86 22-122 100-186 (246)
359 PF06858 NOG1: Nucleolar GTP-b 23.1 1.2E+02 0.0027 20.9 3.2 22 97-118 34-55 (58)
360 PF07683 CobW_C: Cobalamin syn 23.1 66 0.0014 21.9 1.9 22 109-130 69-90 (94)
361 PF00071 Ras: Ras family; Int 23.0 1.3E+02 0.0028 21.5 3.5 80 59-141 50-145 (162)
362 cd03001 PDI_a_P5 PDIa family, 22.7 1.5E+02 0.0032 19.8 3.6 30 101-131 40-69 (103)
363 PF09828 Chrome_Resist: Chroma 22.6 56 0.0012 26.1 1.6 44 94-138 8-56 (135)
364 cd03800 GT1_Sucrose_synthase T 22.5 73 0.0016 25.8 2.4 52 100-152 241-305 (398)
365 cd00401 AdoHcyase S-adenosyl-L 22.5 3.2E+02 0.0068 25.1 6.6 62 87-154 179-246 (413)
366 PRK13759 arylsulfatase; Provis 22.4 2.9E+02 0.0063 25.0 6.3 49 20-69 259-307 (485)
367 COG1172 AraH Ribose/xylose/ara 22.4 69 0.0015 28.2 2.3 30 105-139 181-210 (316)
368 TIGR00048 radical SAM enzyme, 22.3 4.6E+02 0.0099 23.3 7.4 38 44-81 173-214 (355)
369 cd03012 TlpA_like_DipZ_like Tl 22.3 1.7E+02 0.0036 20.9 4.0 36 100-135 44-88 (126)
370 PRK14501 putative bifunctional 22.2 2E+02 0.0044 27.5 5.5 56 97-152 283-364 (726)
371 PRK09186 flagellin modificatio 22.1 3.7E+02 0.0081 20.7 8.3 32 89-120 167-199 (256)
372 cd02004 TPP_BZL_OCoD_HPCL Thia 22.0 1.5E+02 0.0033 22.5 3.9 28 110-137 66-98 (172)
373 PLN02412 probable glutathione 21.9 1.7E+02 0.0037 22.5 4.2 20 99-118 49-69 (167)
374 cd03818 GT1_ExpC_like This fam 21.9 2E+02 0.0043 24.3 4.9 21 99-120 232-252 (396)
375 KOG2924|consensus 21.9 1.1E+02 0.0023 28.0 3.4 40 37-77 103-144 (366)
376 cd08172 GlyDH-like1 Glycerol d 21.8 3.9E+02 0.0085 23.0 6.8 76 61-140 27-109 (347)
377 PF15162 DUF4580: Domain of un 21.8 1.3E+02 0.0028 24.9 3.6 70 58-133 49-129 (162)
378 cd02012 TPP_TK Thiamine pyroph 21.8 1.4E+02 0.003 24.6 3.9 73 59-133 50-157 (255)
379 PF00590 TP_methylase: Tetrapy 21.8 3.7E+02 0.0081 20.5 6.8 68 83-150 46-125 (210)
380 PRK00654 glgA glycogen synthas 21.5 2.6E+02 0.0056 24.8 5.7 21 99-122 302-322 (466)
381 PF00501 AMP-binding: AMP-bind 21.4 87 0.0019 25.9 2.6 42 58-100 279-320 (417)
382 PF03746 LamB_YcsF: LamB/YcsF 21.3 2E+02 0.0043 24.9 4.8 65 71-136 81-161 (242)
383 COG0241 HisB Histidinol phosph 21.3 3.3E+02 0.0073 22.4 6.0 82 55-138 45-149 (181)
384 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 21.3 2.8E+02 0.0061 20.0 5.1 42 109-150 105-159 (166)
385 cd03791 GT1_Glycogen_synthase_ 21.2 2E+02 0.0043 24.9 4.9 12 111-122 325-336 (476)
386 cd01865 Rab3 Rab3 subfamily. 21.2 3.3E+02 0.0072 19.8 6.2 48 102-149 97-157 (165)
387 PRK06196 oxidoreductase; Provi 21.2 2.7E+02 0.0058 22.9 5.5 36 85-120 176-212 (315)
388 PRK07856 short chain dehydroge 21.2 4E+02 0.0088 20.7 7.4 36 85-120 143-178 (252)
389 KOG3236|consensus 21.2 83 0.0018 27.2 2.5 35 101-135 84-120 (225)
390 PRK06523 short chain dehydroge 21.1 4.1E+02 0.0088 20.7 7.4 35 86-120 148-183 (260)
391 PRK14536 cysS cysteinyl-tRNA s 21.0 2.1E+02 0.0045 27.0 5.2 49 89-137 33-99 (490)
392 PRK10897 phosphohistidinoprote 21.0 68 0.0015 23.2 1.7 32 99-130 48-79 (90)
393 PRK05693 short chain dehydroge 21.0 4E+02 0.0088 21.1 6.3 36 84-119 137-173 (274)
394 PLN02448 UDP-glycosyltransfera 20.9 5.8E+02 0.012 23.0 7.9 84 56-139 207-312 (459)
395 COG1925 FruB Phosphotransferas 20.9 68 0.0015 23.5 1.7 31 98-130 45-77 (88)
396 PRK02794 DNA polymerase IV; Pr 20.7 1.2E+02 0.0026 26.9 3.5 69 39-114 343-411 (419)
397 PRK07024 short chain dehydroge 20.7 4.2E+02 0.0092 20.8 7.4 80 29-120 102-182 (257)
398 TIGR01016 sucCoAbeta succinyl- 20.6 1.5E+02 0.0032 26.0 4.0 39 102-140 9-50 (386)
399 PRK14722 flhF flagellar biosyn 20.5 4.5E+02 0.0097 23.9 7.1 59 89-148 142-211 (374)
400 PF02562 PhoH: PhoH-like prote 20.5 56 0.0012 27.1 1.3 21 100-120 135-155 (205)
401 TIGR01003 PTS_HPr_family Phosp 20.4 73 0.0016 22.2 1.7 18 113-130 60-77 (82)
402 PRK05884 short chain dehydroge 20.4 4.2E+02 0.0091 20.6 6.7 37 85-121 135-172 (223)
403 COG1358 RPL8A Ribosomal protei 20.4 1.9E+02 0.0041 22.2 4.1 48 93-143 28-82 (116)
404 PF05621 TniB: Bacterial TniB 20.4 2.1E+02 0.0045 25.6 4.8 49 89-150 66-116 (302)
405 PF01076 Mob_Pre: Plasmid reco 20.1 1E+02 0.0022 24.8 2.7 21 97-117 104-125 (196)
406 cd03418 GRX_GRXb_1_3_like Glut 20.0 2.5E+02 0.0054 17.9 6.4 11 138-148 63-73 (75)
No 1
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=100.00 E-value=2e-75 Score=495.18 Aligned_cols=147 Identities=41% Similarity=0.630 Sum_probs=142.6
Q ss_pred cchhhhhhcccccCChhhHHHHHHHHHHhHHhhhHHHHHHHHH---------------HhhhhcCCCceEEEEeCCCchH
Q psy11337 6 PNETTARLDACGLLGPAKREEWLQLRAEIESVTDNWLSLAIKC---------------LTLINQRPSCTNVIVITTQLIP 70 (155)
Q Consensus 6 ~~y~~Y~~nv~~Ll~~~~r~~w~~lr~e~e~~Td~WLs~A~k~---------------L~~i~~r~~~vNVLVTt~qLVp 70 (155)
|+|++| |++|||+++|+.|++||+|||.+||+|||+|+|| +++|++|+||||||||||||||
T Consensus 112 e~Y~~~---v~~lL~~~~~~~w~~L~~e~d~~TD~WLs~A~k~l~~~~~~~~~~~~~~~~~i~sr~~~vNvLVTs~qLVP 188 (274)
T TIGR01658 112 EIYEKG---LGPLLDPESMEALDELYSETDVYTDRWLSSALKFLEQCSCVEESSDGTSLIEISSRDNCINVLVTSGQLIP 188 (274)
T ss_pred HHHHhh---hhhccCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccccccccccchhccccCCceeEEEEEcCccHH
Confidence 455555 9999999999999999999999999999999999 8889999999999999999999
Q ss_pred HHHHHHHhhcccccccCccccccccChhhHHHHHHHHhCC-CceEEEecCCHHHHHHHHHcCCceeEecccccHHHHHHH
Q psy11337 71 ALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFGR-KCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAALYHA 149 (155)
Q Consensus 71 aLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RFG~-k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L~~a 149 (155)
|||||||||||++|||||||||+|+|||||||||++|||+ ||+|||||||+|||+|||+||||||||++|||+.+||+|
T Consensus 189 aLaKcLLy~L~~~f~ieNIYSa~kvGK~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~aAk~l~wPFw~I~~h~Dl~~l~~a 268 (274)
T TIGR01658 189 SLAKCLLFRLDTIFRIENVYSSIKVGKLQCFKWIKERFGHPKVRFCAIGDGWEECTAAQAMNWPFVKIDLHPDSSHRFPG 268 (274)
T ss_pred HHHHHHHhccCCccccccccchhhcchHHHHHHHHHHhCCCCceEEEeCCChhHHHHHHhcCCCeEEeecCCCHHHhCcc
Confidence 9999999999999999999999999999999999999987 999999999999999999999999999999999999999
Q ss_pred hhcCCC
Q psy11337 150 LDNGFL 155 (155)
Q Consensus 150 l~~~~l 155 (155)
|++++|
T Consensus 269 L~l~~l 274 (274)
T TIGR01658 269 LTLKTL 274 (274)
T ss_pred CCcCCC
Confidence 999986
No 2
>KOG3107|consensus
Probab=100.00 E-value=4.3e-74 Score=510.09 Aligned_cols=151 Identities=62% Similarity=1.016 Sum_probs=150.0
Q ss_pred CcchhhhhhcccccCChhhHHHHHHHHHHhHHhhhHHHHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhccccc
Q psy11337 5 PPNETTARLDACGLLGPAKREEWLQLRAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIF 84 (155)
Q Consensus 5 ~~~y~~Y~~nv~~Ll~~~~r~~w~~lr~e~e~~Td~WLs~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~f 84 (155)
+|+||+|+||+++++||.+|+.|.+||+|+|..||+||++|+|++++|++|+||||||||||||||+||||||||||++|
T Consensus 318 ~e~~~~y~nnv~~l~~p~~~eaw~~lr~~~ev~tdsw~tsaLka~s~i~sr~ncvnVlvTttqLipalaKvLL~gLg~~f 397 (468)
T KOG3107|consen 318 KEIYNTYKNNVGGLTGPNKREAWLQLRAEIEVLTDSWLTSALKALSLISSRKNCVNVLVTTTQLIPALAKVLLYGLGSSF 397 (468)
T ss_pred HHHHHHHHhhhhcccCchhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhcccceeEEEEeccchhHHHHHHHHHhcCCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccccChhhHHHHHHHHhCCCceEEEecCCHHHHHHHHHcCCceeEecccccHHHHHHHhhcCCC
Q psy11337 85 DVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAALYHALDNGFL 155 (155)
Q Consensus 85 pieNIYSa~k~GKescFerI~~RFG~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L~~al~~~~l 155 (155)
|||||||++|+|||||||||++||||||+|||||||+|||+|||+||||||||++|+|+.+||+|||++||
T Consensus 398 piENIYSa~kiGKescFerI~~RFg~K~~yvvIgdG~eee~aAK~ln~PfwrI~~h~Dl~~l~~aL~~~~l 468 (468)
T KOG3107|consen 398 PIENIYSATKIGKESCFERIQSRFGRKVVYVVIGDGVEEEQAAKALNMPFWRISSHSDLDALYSALELEYL 468 (468)
T ss_pred cchhhhhhhhccHHHHHHHHHHHhCCceEEEEecCcHHHHHHHHhhCCceEeeccCccHHHHhhhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997
No 3
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.87 E-value=0.00017 Score=51.88 Aligned_cols=89 Identities=21% Similarity=0.302 Sum_probs=64.2
Q ss_pred HHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccC----hhhHHHHHHHHhC-CCceEEEecCC
Q psy11337 46 IKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG----KDSCFERIVTRFG-RKCTYVVIGDG 120 (155)
Q Consensus 46 ~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G----KescFerI~~RFG-~k~~yvvIGDG 120 (155)
..+|+.+.+ .+.--++||++.---.-.++=-+|+..+|+ .|+++...| +...|+++.+++| +....++|||.
T Consensus 83 ~~~L~~l~~-~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~--~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~vgD~ 159 (176)
T PF13419_consen 83 RELLERLKA-KGIPLVIVSNGSRERIERVLERLGLDDYFD--EIISSDDVGSRKPDPDAYRRALEKLGIPPEEILFVGDS 159 (176)
T ss_dssp HHHHHHHHH-TTSEEEEEESSEHHHHHHHHHHTTHGGGCS--EEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEEEESS
T ss_pred hhhhhhccc-ccceeEEeecCCcccccccccccccccccc--cccccchhhhhhhHHHHHHHHHHHcCCCcceEEEEeCC
Confidence 344444533 366677888886332223333456666665 788777666 3699999999997 66889999999
Q ss_pred HHHHHHHHHcCCceeEe
Q psy11337 121 QDEEAAAKQRNFPFWRI 137 (155)
Q Consensus 121 ~eEe~aAk~~~~PFwrI 137 (155)
...-++|++.||+..-|
T Consensus 160 ~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 160 PSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp HHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHcCCeEEeC
Confidence 99999999999997654
No 4
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.74 E-value=0.00083 Score=49.82 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=63.4
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCchHHHHHHHH-hhcccccccCcccccccc--Ch--hhHHHHHHHHhCC-CceEEEec
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLIPALSKIML-FGLSGIFDVENIYSSTKI--GK--DSCFERIVTRFGR-KCTYVVIG 118 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LL-ygL~~~fpieNIYSa~k~--GK--escFerI~~RFG~-k~~yvvIG 118 (155)
+..+|+.+.++ ++.-++||++.-.. .+.+. +||..+| +.|+++..+ +| ..+|+++.+++|- .-..++||
T Consensus 90 ~~~~l~~l~~~-g~~~~i~Tn~~~~~--~~~~~~~~l~~~f--~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~vg 164 (183)
T TIGR01509 90 VEPLLEALRAR-GKKLALLTNSPRDH--AVLVQELGLRDLF--DVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLFVD 164 (183)
T ss_pred HHHHHHHHHHC-CCeEEEEeCCchHH--HHHHHhcCCHHHC--CEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEEEc
Confidence 46666666554 45557777776544 55555 7888776 456665444 35 6899999999984 46778899
Q ss_pred CCHHHHHHHHHcCCceeE
Q psy11337 119 DGQDEEAAAKQRNFPFWR 136 (155)
Q Consensus 119 DG~eEe~aAk~~~~PFwr 136 (155)
|....-+||++.||+++-
T Consensus 165 D~~~di~aA~~~G~~~i~ 182 (183)
T TIGR01509 165 DSPAGIEAAKAAGMHTVL 182 (183)
T ss_pred CCHHHHHHHHHcCCEEEe
Confidence 999999999999998764
No 5
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=97.70 E-value=0.00059 Score=53.02 Aligned_cols=101 Identities=13% Similarity=0.209 Sum_probs=72.6
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCchHHHHHHH-H-hhcccccccCccccccccC----hhhHHHHHHHHhC-CCceEEEe
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLIPALSKIM-L-FGLSGIFDVENIYSSTKIG----KDSCFERIVTRFG-RKCTYVVI 117 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~L-L-ygL~~~fpieNIYSa~k~G----KescFerI~~RFG-~k~~yvvI 117 (155)
+..+|+.+.++ +..-+++|++.-. ...+++ . .++..+| +.||++..+| +...|+.+.+++| +.-.-++|
T Consensus 89 ~~e~L~~l~~~-g~~~~i~Sn~~~~-~~~~~~~~~~~l~~~f--d~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~v 164 (199)
T PRK09456 89 VIAIMHKLREQ-GHRVVVLSNTNRL-HTTFWPEEYPEVRAAA--DHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAVFF 164 (199)
T ss_pred HHHHHHHHHhC-CCcEEEEcCCchh-hHHHHHhhchhHHHhc--CEEEEecccCCCCCCHHHHHHHHHHcCCChhHeEEe
Confidence 44555555443 4566788887632 222222 1 2566665 6899988776 4789999999998 44666889
Q ss_pred cCCHHHHHHHHHcCCceeEecccccHHHHHHH
Q psy11337 118 GDGQDEEAAAKQRNFPFWRISSRSDLAALYHA 149 (155)
Q Consensus 118 GDG~eEe~aAk~~~~PFwrI~~~~Dl~~L~~a 149 (155)
||...--+||++.||.++.+....++.+.-.+
T Consensus 165 gD~~~di~aA~~aG~~~i~~~~~~~~~~~l~~ 196 (199)
T PRK09456 165 DDNADNIEAANALGITSILVTDKQTIPDYFAK 196 (199)
T ss_pred CCCHHHHHHHHHcCCEEEEecCCccHHHHHHh
Confidence 99998899999999999999988887765443
No 6
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.67 E-value=0.00035 Score=54.09 Aligned_cols=93 Identities=18% Similarity=0.253 Sum_probs=71.0
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccC--h--hhHHHHHHHHhC-CCceEEEecC
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG--K--DSCFERIVTRFG-RKCTYVVIGD 119 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G--K--escFerI~~RFG-~k~~yvvIGD 119 (155)
+..+|+.+..+ +..-.+||++.--..-.++--+||..+| +.|+++..+| | ..+|+.+.+++| ....-++|||
T Consensus 99 ~~~~L~~L~~~-g~~~~i~Tn~~~~~~~~~l~~~~l~~~f--~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~igD 175 (221)
T TIGR02253 99 VRDTLMELRES-GYRLGIITDGLPVKQWEKLERLGVRDFF--DAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVMVGD 175 (221)
T ss_pred HHHHHHHHHHC-CCEEEEEeCCchHHHHHHHHhCChHHhc--cEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEEEECC
Confidence 34555555443 5667889998755555566567888888 5788887776 3 479999999998 4467999999
Q ss_pred CH-HHHHHHHHcCCceeEeccc
Q psy11337 120 GQ-DEEAAAKQRNFPFWRISSR 140 (155)
Q Consensus 120 G~-eEe~aAk~~~~PFwrI~~~ 140 (155)
.. -.-++|++.||.++-+...
T Consensus 176 s~~~di~~A~~aG~~~i~~~~~ 197 (221)
T TIGR02253 176 RLDKDIKGAKNLGMKTVWINQG 197 (221)
T ss_pred ChHHHHHHHHHCCCEEEEECCC
Confidence 98 5889999999999888754
No 7
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.67 E-value=0.00041 Score=53.74 Aligned_cols=91 Identities=15% Similarity=0.141 Sum_probs=68.1
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccC----hhhHHHHHHHHhC-CCceEEEecC
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG----KDSCFERIVTRFG-RKCTYVVIGD 119 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G----KescFerI~~RFG-~k~~yvvIGD 119 (155)
+...|+.+.++ +..-+++|++.-.-.-.++=-+|+..+|+ .+|++...+ +..+|+++.+++| +.-.-++|||
T Consensus 80 ~~~~L~~L~~~-g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~--~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~igD 156 (205)
T TIGR01454 80 VPELLAELRAD-GVGTAIATGKSGPRARSLLEALGLLPLFD--HVIGSDEVPRPKPAPDIVREALRLLDVPPEDAVMVGD 156 (205)
T ss_pred HHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHcCChhhee--eEEecCcCCCCCCChHHHHHHHHHcCCChhheEEEcC
Confidence 34445545444 56778888877555555555678888775 577775543 6799999999998 4566799999
Q ss_pred CHHHHHHHHHcCCceeEec
Q psy11337 120 GQDEEAAAKQRNFPFWRIS 138 (155)
Q Consensus 120 G~eEe~aAk~~~~PFwrI~ 138 (155)
+...-+||++.||+++-+.
T Consensus 157 ~~~Di~aA~~~Gi~~i~~~ 175 (205)
T TIGR01454 157 AVTDLASARAAGTATVAAL 175 (205)
T ss_pred CHHHHHHHHHcCCeEEEEE
Confidence 9888899999999998764
No 8
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.53 E-value=0.001 Score=51.21 Aligned_cols=91 Identities=18% Similarity=0.266 Sum_probs=65.1
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccC----hhhHHHHHHHHh-C-CCceEEEec
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG----KDSCFERIVTRF-G-RKCTYVVIG 118 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G----KescFerI~~RF-G-~k~~yvvIG 118 (155)
+...|+.+.++ ..-+++|++.---.-.++=-++++++| +.||++..+| +..+|+...+++ | +.-.=|+||
T Consensus 102 ~~~~L~~l~~~--~~~~i~Sn~~~~~~~~~l~~~~l~~~f--d~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~ig 177 (224)
T TIGR02254 102 AFELMENLQQK--FRLYIVTNGVRETQYKRLRKSGLFPFF--DDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVLMIG 177 (224)
T ss_pred HHHHHHHHHhc--CcEEEEeCCchHHHHHHHHHCCcHhhc--CEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheEEEC
Confidence 34455555554 556777776532222333346788887 6899988765 456999999999 8 445689999
Q ss_pred CCH-HHHHHHHHcCCceeEecc
Q psy11337 119 DGQ-DEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 119 DG~-eEe~aAk~~~~PFwrI~~ 139 (155)
|.. ---+||++.||++.-++.
T Consensus 178 D~~~~di~~A~~~G~~~i~~~~ 199 (224)
T TIGR02254 178 DSLTADIKGGQNAGLDTCWMNP 199 (224)
T ss_pred CCcHHHHHHHHHCCCcEEEECC
Confidence 997 488999999999988764
No 9
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.48 E-value=0.0018 Score=50.38 Aligned_cols=97 Identities=12% Similarity=0.115 Sum_probs=69.1
Q ss_pred HHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcc--cccccCcccccccc--C--hhhHHHHHHHHhCCC--ceEEEec
Q psy11337 47 KCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLS--GIFDVENIYSSTKI--G--KDSCFERIVTRFGRK--CTYVVIG 118 (155)
Q Consensus 47 k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~--~~fpieNIYSa~k~--G--KescFerI~~RFG~k--~~yvvIG 118 (155)
..|..+.++ +..-.+||++.---.-.++=-+++. .+|+ -+|++..+ + +...|++..+|+|-+ -.-++||
T Consensus 94 ~~L~~L~~~-g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~--~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~ig 170 (220)
T TIGR03351 94 EAFRSLRSS-GIKVALTTGFDRDTAERLLEKLGWTVGDDVD--AVVCPSDVAAGRPAPDLILRAMELTGVQDVQSVAVAG 170 (220)
T ss_pred HHHHHHHHC-CCEEEEEeCCchHHHHHHHHHhhhhhhccCC--EEEcCCcCCCCCCCHHHHHHHHHHcCCCChhHeEEeC
Confidence 344444444 5667888888754444444446777 7786 48887664 3 459999999999853 6899999
Q ss_pred CCHHHHHHHHHcCCce-eEecc-cccHHHH
Q psy11337 119 DGQDEEAAAKQRNFPF-WRISS-RSDLAAL 146 (155)
Q Consensus 119 DG~eEe~aAk~~~~PF-wrI~~-~~Dl~~L 146 (155)
|+.-.-+||++.||++ +-+.. +.+...+
T Consensus 171 D~~~Di~aa~~aG~~~~i~~~~g~~~~~~~ 200 (220)
T TIGR03351 171 DTPNDLEAGINAGAGAVVGVLTGAHDAEEL 200 (220)
T ss_pred CCHHHHHHHHHCCCCeEEEEecCCCcHHHH
Confidence 9999999999999999 76654 3343333
No 10
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.44 E-value=0.0014 Score=51.03 Aligned_cols=93 Identities=15% Similarity=0.168 Sum_probs=67.7
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccC----hhhHHHHHHHHhC-CCceEEEecC
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG----KDSCFERIVTRFG-RKCTYVVIGD 119 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G----KescFerI~~RFG-~k~~yvvIGD 119 (155)
+..+|+.+.++ +..-+++|+..---.-.++=-+|+..+|+ .|+++-.++ |...|+++.+++| ..-..++|||
T Consensus 87 ~~~~l~~L~~~-g~~~~i~S~~~~~~~~~~l~~~gl~~~f~--~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~iGD 163 (214)
T PRK13288 87 VYETLKTLKKQ-GYKLGIVTTKMRDTVEMGLKLTGLDEFFD--VVITLDDVEHAKPDPEPVLKALELLGAKPEEALMVGD 163 (214)
T ss_pred HHHHHHHHHHC-CCeEEEEeCCCHHHHHHHHHHcCChhcee--EEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEEECC
Confidence 45555556554 45567788876433334444578888874 577765542 5789999999998 4467889999
Q ss_pred CHHHHHHHHHcCCceeEeccc
Q psy11337 120 GQDEEAAAKQRNFPFWRISSR 140 (155)
Q Consensus 120 G~eEe~aAk~~~~PFwrI~~~ 140 (155)
...--+||++.|++++-+...
T Consensus 164 s~~Di~aa~~aG~~~i~v~~g 184 (214)
T PRK13288 164 NHHDILAGKNAGTKTAGVAWT 184 (214)
T ss_pred CHHHHHHHHHCCCeEEEEcCC
Confidence 999999999999999888653
No 11
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.38 E-value=0.00097 Score=49.99 Aligned_cols=89 Identities=16% Similarity=0.157 Sum_probs=63.0
Q ss_pred HHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccC----hhhHHHHHHHHhCC-CceEEEec
Q psy11337 44 LAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG----KDSCFERIVTRFGR-KCTYVVIG 118 (155)
Q Consensus 44 ~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G----KescFerI~~RFG~-k~~yvvIG 118 (155)
-+..+|+.+.++ +..-.++|++.-.+. ++--+|+..+| +.++++..+| +..+|+.+.+|+|- ...-|+||
T Consensus 91 g~~~~L~~L~~~-g~~~~i~s~~~~~~~--~l~~~~l~~~f--~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~vg 165 (185)
T TIGR01990 91 GIKNLLDDLKKN-NIKIALASASKNAPT--VLEKLGLIDYF--DAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIGIE 165 (185)
T ss_pred cHHHHHHHHHHC-CCeEEEEeCCccHHH--HHHhcCcHhhC--cEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEEEe
Confidence 345566666655 344566776644333 33445777776 5566665443 67899999999984 46788999
Q ss_pred CCHHHHHHHHHcCCceeEe
Q psy11337 119 DGQDEEAAAKQRNFPFWRI 137 (155)
Q Consensus 119 DG~eEe~aAk~~~~PFwrI 137 (155)
|...--+||++.||++.-+
T Consensus 166 D~~~di~aA~~aG~~~i~v 184 (185)
T TIGR01990 166 DAQAGIEAIKAAGMFAVGV 184 (185)
T ss_pred cCHHHHHHHHHcCCEEEec
Confidence 9999999999999998754
No 12
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.37 E-value=0.0012 Score=52.98 Aligned_cols=91 Identities=15% Similarity=0.239 Sum_probs=68.5
Q ss_pred HHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccC--h--hhHHHHHHHHhC-CCceEEEecCC
Q psy11337 46 IKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG--K--DSCFERIVTRFG-RKCTYVVIGDG 120 (155)
Q Consensus 46 ~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G--K--escFerI~~RFG-~k~~yvvIGDG 120 (155)
..+|+.+.++ +..-.++|++.---...++=-+|+..+|. .|+++..+| | ..+|+++.+++| +...-++|||.
T Consensus 99 ~e~L~~Lk~~-g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd--~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~igDs 175 (224)
T PRK14988 99 VPFLEALKAS-GKRRILLTNAHPHNLAVKLEHTGLDAHLD--LLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTLFIDDS 175 (224)
T ss_pred HHHHHHHHhC-CCeEEEEeCcCHHHHHHHHHHCCcHHHCC--EEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEEEEcCC
Confidence 4444445544 56678899987666566655578888884 588776654 5 579999999998 45678899999
Q ss_pred HHHHHHHHHcCCce-eEecc
Q psy11337 121 QDEEAAAKQRNFPF-WRISS 139 (155)
Q Consensus 121 ~eEe~aAk~~~~PF-wrI~~ 139 (155)
...-+||+..||++ |-+..
T Consensus 176 ~~di~aA~~aG~~~~~~v~~ 195 (224)
T PRK14988 176 EPILDAAAQFGIRYCLGVTN 195 (224)
T ss_pred HHHHHHHHHcCCeEEEEEeC
Confidence 99999999999995 65554
No 13
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=97.35 E-value=0.0015 Score=50.67 Aligned_cols=103 Identities=11% Similarity=0.143 Sum_probs=71.1
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCchH--HHHHHHHhhcccccccCccccccccC--h--hhHHHHHHHHhCC-CceEEEe
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLIP--ALSKIMLFGLSGIFDVENIYSSTKIG--K--DSCFERIVTRFGR-KCTYVVI 117 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLVp--aLaK~LLygL~~~fpieNIYSa~k~G--K--escFerI~~RFG~-k~~yvvI 117 (155)
+..+|+.+.++ +..-+++|++.-.. ......-+++.++| +-||++..+| | ...|+.+.+++|- .-.-++|
T Consensus 99 ~~~~L~~L~~~-g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~f--d~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~~l~i 175 (211)
T TIGR02247 99 MMAAIKTLRAK-GFKTACITNNFPTDHSAEEALLPGDIMALF--DAVVESCLEGLRKPDPRIYQLMLERLGVAPEECVFL 175 (211)
T ss_pred HHHHHHHHHHC-CCeEEEEeCCCCccchhhhHhhhhhhHhhC--CEEEEeeecCCCCCCHHHHHHHHHHcCCCHHHeEEE
Confidence 45566666544 56667888875433 22223335677777 4577776553 5 5699999999983 3445566
Q ss_pred cCCHHHHHHHHHcCCceeEecccccHHHHHHHh
Q psy11337 118 GDGQDEEAAAKQRNFPFWRISSRSDLAALYHAL 150 (155)
Q Consensus 118 GDG~eEe~aAk~~~~PFwrI~~~~Dl~~L~~al 150 (155)
||....-+||++.||+.+.+....++.+...++
T Consensus 176 ~D~~~di~aA~~aG~~~i~v~~~~~~~~~l~~~ 208 (211)
T TIGR02247 176 DDLGSNLKPAAALGITTIKVSDEEQAIHDLEKA 208 (211)
T ss_pred cCCHHHHHHHHHcCCEEEEECCHHHHHHHHHHH
Confidence 999999999999999999998876665544443
No 14
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.34 E-value=0.0012 Score=50.21 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=59.9
Q ss_pred eEEEEeCCCchHHHHHHHHhhcccccccCccccccccC--------hhhHHHHHHHHhCCC-ceEEEecCCHHHHHHHHH
Q psy11337 59 TNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG--------KDSCFERIVTRFGRK-CTYVVIGDGQDEEAAAKQ 129 (155)
Q Consensus 59 vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G--------KescFerI~~RFG~k-~~yvvIGDG~eEe~aAk~ 129 (155)
..+++|++.....-.++=-+|+..+|+ .||++...| +...|+++.+++|.+ ..-++|||....-+||++
T Consensus 99 ~~~i~Tn~~~~~~~~~l~~~gl~~~fd--~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~vgD~~~di~aA~~ 176 (184)
T TIGR01993 99 RKIIFTNGDRAHARRALNRLGIEDCFD--GIFCFDTANPDYLLPKPSPQAYEKALREAGVDPERAIFFDDSARNIAAAKA 176 (184)
T ss_pred CEEEEeCCCHHHHHHHHHHcCcHhhhC--eEEEeecccCccCCCCCCHHHHHHHHHHhCCCccceEEEeCCHHHHHHHHH
Confidence 468899998766666666677877775 688876554 457999999999844 567899999999999999
Q ss_pred cCCceeE
Q psy11337 130 RNFPFWR 136 (155)
Q Consensus 130 ~~~PFwr 136 (155)
.||++.-
T Consensus 177 ~G~~~i~ 183 (184)
T TIGR01993 177 LGMKTVL 183 (184)
T ss_pred cCCEEee
Confidence 9998753
No 15
>PHA02597 30.2 hypothetical protein; Provisional
Probab=97.30 E-value=0.0019 Score=49.69 Aligned_cols=94 Identities=14% Similarity=0.170 Sum_probs=67.2
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccc--cCcccc-ccccChhhHHHHHHHHhCCCceEEEecCCH
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFD--VENIYS-STKIGKDSCFERIVTRFGRKCTYVVIGDGQ 121 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fp--ieNIYS-a~k~GKescFerI~~RFG~k~~yvvIGDG~ 121 (155)
+..+|+...++ .. -+++|++.--+.-.+.--++|..+|+ .+-|+| ....+|...|..+.+++| .-..|+|||..
T Consensus 79 ~~e~L~~L~~~-~~-~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~~~kp~~~~~a~~~~~-~~~~v~vgDs~ 155 (197)
T PHA02597 79 ALDVINKLKED-YD-FVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHDESKEKLFIKAKEKYG-DRVVCFVDDLA 155 (197)
T ss_pred HHHHHHHHHhc-CC-EEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccCcccHHHHHHHHHHhC-CCcEEEeCCCH
Confidence 56677777665 33 46778766555433344556666664 134433 233578999999999999 55588999999
Q ss_pred HHHHHHHHc--CCceeEecccc
Q psy11337 122 DEEAAAKQR--NFPFWRISSRS 141 (155)
Q Consensus 122 eEe~aAk~~--~~PFwrI~~~~ 141 (155)
.--+||++. ||++.-++.+.
T Consensus 156 ~di~aA~~a~~Gi~~i~~~~~~ 177 (197)
T PHA02597 156 HNLDAAHEALSQLPVIHMLRGE 177 (197)
T ss_pred HHHHHHHHHHcCCcEEEecchh
Confidence 999999998 99999997654
No 16
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.25 E-value=0.004 Score=48.11 Aligned_cols=94 Identities=11% Similarity=0.167 Sum_probs=63.6
Q ss_pred HHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccC----hhhHHHHHHHHhCC-CceEEE
Q psy11337 42 LSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG----KDSCFERIVTRFGR-KCTYVV 116 (155)
Q Consensus 42 Ls~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G----KescFerI~~RFG~-k~~yvv 116 (155)
..-+...|+.+.++ +..-+++|++.-.-.-.++=-+++..+|. -++++-.++ +-.+|+.+.+++|- .-.-++
T Consensus 95 ~~g~~~~l~~l~~~-g~~~~i~S~~~~~~~~~~l~~~~l~~~f~--~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~ 171 (226)
T PRK13222 95 YPGVKETLAALKAA-GYPLAVVTNKPTPFVAPLLEALGIADYFS--VVIGGDSLPNKKPDPAPLLLACEKLGLDPEEMLF 171 (226)
T ss_pred CCCHHHHHHHHHHC-CCeEEEEeCCCHHHHHHHHHHcCCccCcc--EEEcCCCCCCCCcChHHHHHHHHHcCCChhheEE
Confidence 34455566666544 44456777765332223333467777765 355554432 46799999999974 356788
Q ss_pred ecCCHHHHHHHHHcCCceeEec
Q psy11337 117 IGDGQDEEAAAKQRNFPFWRIS 138 (155)
Q Consensus 117 IGDG~eEe~aAk~~~~PFwrI~ 138 (155)
|||+...-++|++.||++.-+.
T Consensus 172 igD~~~Di~~a~~~g~~~i~v~ 193 (226)
T PRK13222 172 VGDSRNDIQAARAAGCPSVGVT 193 (226)
T ss_pred ECCCHHHHHHHHHCCCcEEEEC
Confidence 9999999999999999988875
No 17
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.24 E-value=0.0029 Score=48.62 Aligned_cols=91 Identities=13% Similarity=0.139 Sum_probs=64.6
Q ss_pred HHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccC----hhhHHHHHHHHhCC-CceEEEecCC
Q psy11337 46 IKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG----KDSCFERIVTRFGR-KCTYVVIGDG 120 (155)
Q Consensus 46 ~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G----KescFerI~~RFG~-k~~yvvIGDG 120 (155)
..+|+.+.++ +..-+++|++.---.-.++=-+||..+| +-|+++..+| +...|+.+.+++|- .-.-++|||+
T Consensus 98 ~~~L~~L~~~-g~~~~i~Sn~~~~~~~~~l~~~gl~~~f--d~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~vgD~ 174 (198)
T TIGR01428 98 PAGLRALKER-GYRLAILSNGSPAMLKSLVKHAGLDDPF--DAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLFVASN 174 (198)
T ss_pred HHHHHHHHHC-CCeEEEEeCCCHHHHHHHHHHCCChhhh--heeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEEEeCC
Confidence 4444444433 4556778877643333333345666676 5688887766 36799999999984 4557889999
Q ss_pred HHHHHHHHHcCCceeEecc
Q psy11337 121 QDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 121 ~eEe~aAk~~~~PFwrI~~ 139 (155)
...-+||++.||+..-|.-
T Consensus 175 ~~Di~~A~~~G~~~i~v~r 193 (198)
T TIGR01428 175 PWDLGGAKKFGFKTAWVNR 193 (198)
T ss_pred HHHHHHHHHCCCcEEEecC
Confidence 9889999999999987764
No 18
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.20 E-value=0.005 Score=50.00 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=70.3
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCcccccccc--C--hhhHHHHHHHHhC-CCceEEEecC
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKI--G--KDSCFERIVTRFG-RKCTYVVIGD 119 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~--G--KescFerI~~RFG-~k~~yvvIGD 119 (155)
+...|+.+.++ +.--.+||+++-.-.-.++=-+|+..+|+. |+++..+ + +..+|+++.+++| +.-.-++|||
T Consensus 113 v~e~L~~L~~~-g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~--iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l~vgD 189 (248)
T PLN02770 113 LYKLKKWIEDR-GLKRAAVTNAPRENAELMISLLGLSDFFQA--VIIGSECEHAKPHPDPYLKALEVLKVSKDHTFVFED 189 (248)
T ss_pred HHHHHHHHHHc-CCeEEEEeCCCHHHHHHHHHHcCChhhCcE--EEecCcCCCCCCChHHHHHHHHHhCCChhHEEEEcC
Confidence 45555555444 566788999886666666666888888854 6766654 3 4579999999998 4466788999
Q ss_pred CHHHHHHHHHcCCceeEecc
Q psy11337 120 GQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 120 G~eEe~aAk~~~~PFwrI~~ 139 (155)
..---+||++.|+++.-+..
T Consensus 190 s~~Di~aA~~aGi~~i~v~~ 209 (248)
T PLN02770 190 SVSGIKAGVAAGMPVVGLTT 209 (248)
T ss_pred CHHHHHHHHHCCCEEEEEeC
Confidence 99999999999999998854
No 19
>PRK09449 dUMP phosphatase; Provisional
Probab=97.12 E-value=0.0057 Score=47.71 Aligned_cols=91 Identities=13% Similarity=0.215 Sum_probs=67.5
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccC----hhhHHHHHHHHhC-CC-ceEEEec
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG----KDSCFERIVTRFG-RK-CTYVVIG 118 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G----KescFerI~~RFG-~k-~~yvvIG 118 (155)
+...|+.+.+ +..=.++|++.---.-.++=-+|+..+| +-|+++..+| +...|+.+.+++| .. -.-++||
T Consensus 100 ~~~~L~~L~~--~~~~~i~Tn~~~~~~~~~l~~~~l~~~f--d~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~~vg 175 (224)
T PRK09449 100 AVELLNALRG--KVKMGIITNGFTELQQVRLERTGLRDYF--DLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVLMVG 175 (224)
T ss_pred HHHHHHHHHh--CCeEEEEeCCcHHHHHHHHHhCChHHHc--CEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEEEEc
Confidence 4556666663 3566678888755445555567788887 5588877654 4569999999998 33 5789999
Q ss_pred CCHH-HHHHHHHcCCceeEecc
Q psy11337 119 DGQD-EEAAAKQRNFPFWRISS 139 (155)
Q Consensus 119 DG~e-Ee~aAk~~~~PFwrI~~ 139 (155)
|..+ .-+||+..||.+.-+..
T Consensus 176 D~~~~Di~~A~~aG~~~i~~~~ 197 (224)
T PRK09449 176 DNLHSDILGGINAGIDTCWLNA 197 (224)
T ss_pred CCcHHHHHHHHHCCCcEEEECC
Confidence 9975 78899999999888863
No 20
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.10 E-value=0.0049 Score=47.58 Aligned_cols=88 Identities=18% Similarity=0.307 Sum_probs=67.0
Q ss_pred HHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccC--h--hhHHHHHHHHhC-CCceEEEecCC
Q psy11337 46 IKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG--K--DSCFERIVTRFG-RKCTYVVIGDG 120 (155)
Q Consensus 46 ~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G--K--escFerI~~RFG-~k~~yvvIGDG 120 (155)
...|+....+ +--+++|++.-.-+..++--.||.++| +-|++|..+| | ...|+...+++| +.-.-+.|||.
T Consensus 105 ~~~L~~l~~~--~~l~ilTNg~~~~~~~~l~~~gl~~~F--d~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~VgD~ 180 (229)
T COG1011 105 LEALKELGKK--YKLGILTNGARPHQERKLRQLGLLDYF--DAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALFVGDS 180 (229)
T ss_pred HHHHHHHHhh--ccEEEEeCCChHHHHHHHHHcCChhhh--heEEEecccccCCCCcHHHHHHHHHcCCCcceEEEECCC
Confidence 4445555555 677899999555555566556666666 5799999999 4 579999999998 45678999999
Q ss_pred HHHH-HHHHHcCCceeEe
Q psy11337 121 QDEE-AAAKQRNFPFWRI 137 (155)
Q Consensus 121 ~eEe-~aAk~~~~PFwrI 137 (155)
.+.- .+|+++||--.-|
T Consensus 181 ~~~di~gA~~~G~~~vwi 198 (229)
T COG1011 181 LENDILGARALGMKTVWI 198 (229)
T ss_pred hhhhhHHHHhcCcEEEEE
Confidence 9999 9999999965333
No 21
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.05 E-value=0.0049 Score=51.36 Aligned_cols=92 Identities=16% Similarity=0.254 Sum_probs=69.1
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCcccccccc--Ch--hhHHHHHHHHhC-CCceEEEecC
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKI--GK--DSCFERIVTRFG-RKCTYVVIGD 119 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~--GK--escFerI~~RFG-~k~~yvvIGD 119 (155)
+..+|+.+.++ +..-.+||+..-.-.-.++=-+|+.++|.. |+++..+ +| ..+|..+.+|+| +.-.-++|||
T Consensus 114 ~~e~L~~L~~~-g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~--ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l~IgD 190 (260)
T PLN03243 114 SREFVQALKKH-EIPIAVASTRPRRYLERAIEAVGMEGFFSV--VLAAEDVYRGKPDPEMFMYAAERLGFIPERCIVFGN 190 (260)
T ss_pred HHHHHHHHHHC-CCEEEEEeCcCHHHHHHHHHHcCCHhhCcE--EEecccCCCCCCCHHHHHHHHHHhCCChHHeEEEcC
Confidence 45566666554 567778888876555555555788888764 6666554 34 579999999998 4566788999
Q ss_pred CHHHHHHHHHcCCceeEecc
Q psy11337 120 GQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 120 G~eEe~aAk~~~~PFwrI~~ 139 (155)
...--+||++.||+++-+..
T Consensus 191 s~~Di~aA~~aG~~~i~v~g 210 (260)
T PLN03243 191 SNSSVEAAHDGCMKCVAVAG 210 (260)
T ss_pred CHHHHHHHHHcCCEEEEEec
Confidence 99999999999999988864
No 22
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.03 E-value=0.0098 Score=48.46 Aligned_cols=94 Identities=6% Similarity=-0.043 Sum_probs=64.9
Q ss_pred HHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccC--h--hhHHHHHHHHhCC--CceEEEe
Q psy11337 44 LAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG--K--DSCFERIVTRFGR--KCTYVVI 117 (155)
Q Consensus 44 ~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G--K--escFerI~~RFG~--k~~yvvI 117 (155)
-+..+|+.+.++ +..-.++|++.-...-.++=.+++.++|. +-|+++-.++ | ..+|..+.+|+|- .-.-++|
T Consensus 105 g~~elL~~L~~~-g~~l~I~T~~~~~~~~~~l~~~~l~~~~~-d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~l~I 182 (267)
T PRK13478 105 GVLEVIAALRAR-GIKIGSTTGYTREMMDVVVPLAAAQGYRP-DHVVTTDDVPAGRPYPWMALKNAIELGVYDVAACVKV 182 (267)
T ss_pred CHHHHHHHHHHC-CCEEEEEcCCcHHHHHHHHHHHhhcCCCc-eEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcceEEE
Confidence 345555556544 33444556554433333333566767653 5677776543 4 5799999999984 3678999
Q ss_pred cCCHHHHHHHHHcCCceeEecc
Q psy11337 118 GDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 118 GDG~eEe~aAk~~~~PFwrI~~ 139 (155)
||..-.-+||++.|++++-|..
T Consensus 183 GDs~~Di~aA~~aG~~~i~v~~ 204 (267)
T PRK13478 183 DDTVPGIEEGLNAGMWTVGVIL 204 (267)
T ss_pred cCcHHHHHHHHHCCCEEEEEcc
Confidence 9999999999999999999875
No 23
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.97 E-value=0.0039 Score=46.70 Aligned_cols=86 Identities=14% Similarity=0.142 Sum_probs=58.9
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccC----hhhHHHHHHHHhCC-CceEEEecC
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG----KDSCFERIVTRFGR-KCTYVVIGD 119 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G----KescFerI~~RFG~-k~~yvvIGD 119 (155)
+..+|+.+.++ +..-+++|++..+- .++=.+|+..+| +.++++-..+ +...|+++.+++|- .-.-++|||
T Consensus 93 ~~~~l~~l~~~-g~~i~i~S~~~~~~--~~l~~~~l~~~f--~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~IgD 167 (185)
T TIGR02009 93 IENFLKRLKKK-GIAVGLGSSSKNAD--RILAKLGLTDYF--DAIVDADEVKEGKPHPETFLLAAELLGVSPNECVVFED 167 (185)
T ss_pred HHHHHHHHHHc-CCeEEEEeCchhHH--HHHHHcChHHHC--CEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeEEEeC
Confidence 44555555544 45556777762221 122246777776 4677765543 45799999999984 356788999
Q ss_pred CHHHHHHHHHcCCcee
Q psy11337 120 GQDEEAAAKQRNFPFW 135 (155)
Q Consensus 120 G~eEe~aAk~~~~PFw 135 (155)
...--+||++.||+++
T Consensus 168 ~~~di~aA~~~G~~~i 183 (185)
T TIGR02009 168 ALAGVQAARAAGMFAV 183 (185)
T ss_pred cHhhHHHHHHCCCeEe
Confidence 9999999999999976
No 24
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=96.84 E-value=0.014 Score=46.93 Aligned_cols=93 Identities=9% Similarity=-0.032 Sum_probs=64.1
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccC----hhhHHHHHHHHhCC--CceEEEec
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG----KDSCFERIVTRFGR--KCTYVVIG 118 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G----KescFerI~~RFG~--k~~yvvIG 118 (155)
+..+|+.+.++ +.--.+||+..--..-.++=-+|+..+| .+-|+++-.++ +..+|.++.+++|- .-.-++||
T Consensus 104 ~~e~L~~L~~~-g~~l~IvT~~~~~~~~~~l~~~gl~~~f-~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~l~IG 181 (253)
T TIGR01422 104 VIEVIAYLRAR-GIKIGSTTGYTREMMDVVAPEAALQGYR-PDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAACVKVG 181 (253)
T ss_pred HHHHHHHHHHC-CCeEEEECCCcHHHHHHHHHHHHhcCCC-CceEEccccCCCCCCCHHHHHHHHHHcCCCCchheEEEC
Confidence 34555555554 3344456665433222222246888876 25567766543 56899999999984 56789999
Q ss_pred CCHHHHHHHHHcCCceeEecc
Q psy11337 119 DGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 119 DG~eEe~aAk~~~~PFwrI~~ 139 (155)
|..-.-+||+..||+++-+..
T Consensus 182 Ds~~Di~aA~~aGi~~i~v~~ 202 (253)
T TIGR01422 182 DTVPDIEEGRNAGMWTVGLIL 202 (253)
T ss_pred CcHHHHHHHHHCCCeEEEEec
Confidence 999999999999999999965
No 25
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=96.82 E-value=0.013 Score=45.06 Aligned_cols=91 Identities=16% Similarity=0.232 Sum_probs=62.0
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCchHHHHHHH-HhhcccccccCcccccccc--C--hhhHHHHHHHHhCCC-ceEEEec
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLIPALSKIM-LFGLSGIFDVENIYSSTKI--G--KDSCFERIVTRFGRK-CTYVVIG 118 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~L-LygL~~~fpieNIYSa~k~--G--KescFerI~~RFG~k-~~yvvIG 118 (155)
+...|+.+.++ +.--+++|++.- ..+-+.| -+++..+|+ -++++-.+ + +..+|.++.+++|-+ -.-++||
T Consensus 90 ~~~~L~~l~~~-g~~~~i~S~~~~-~~~~~~l~~~~l~~~f~--~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~ig 165 (213)
T TIGR01449 90 VEATLGALRAK-GLRLGLVTNKPT-PLARPLLELLGLAKYFS--VLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMVYVG 165 (213)
T ss_pred HHHHHHHHHHC-CCeEEEEeCCCH-HHHHHHHHHcCcHhhCc--EEEecCCCCCCCCChHHHHHHHHHcCCChhHeEEeC
Confidence 34455545443 345567777643 3333322 357777775 46776543 2 457999999999844 4577899
Q ss_pred CCHHHHHHHHHcCCceeEecc
Q psy11337 119 DGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 119 DG~eEe~aAk~~~~PFwrI~~ 139 (155)
|...--+||++.|+++.-+..
T Consensus 166 Ds~~d~~aa~~aG~~~i~v~~ 186 (213)
T TIGR01449 166 DSRVDIQAARAAGCPSVLLTY 186 (213)
T ss_pred CCHHHHHHHHHCCCeEEEEcc
Confidence 999999999999999998854
No 26
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=96.80 E-value=0.004 Score=48.63 Aligned_cols=80 Identities=8% Similarity=0.105 Sum_probs=59.7
Q ss_pred ceEEEEeCCCchHHHHHHHHhhcccccccCccccccccC----hhhHHHHHHHHhCCC-ceEEEecCCHHHHHHHHHcCC
Q psy11337 58 CTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG----KDSCFERIVTRFGRK-CTYVVIGDGQDEEAAAKQRNF 132 (155)
Q Consensus 58 ~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G----KescFerI~~RFG~k-~~yvvIGDG~eEe~aAk~~~~ 132 (155)
.-=.+||+++-...-.++=.++|..+|+- -|+|+..+| +..+|+.+.+++|-+ -.-++|||...-=+||++.||
T Consensus 102 ~~~~ivTn~~~~~~~~~l~~~~l~~~F~~-~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~igDs~~di~aA~~aG~ 180 (221)
T PRK10563 102 VPMCVVSNGPVSKMQHSLGKTGMLHYFPD-KLFSGYDIQRWKPDPALMFHAAEAMNVNVENCILVDDSSAGAQSGIAAGM 180 (221)
T ss_pred CCEEEEeCCcHHHHHHHHHhcChHHhCcc-eEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeEEEeCcHhhHHHHHHCCC
Confidence 45566787765444444445799999972 266665443 479999999999844 567899999999999999999
Q ss_pred ceeEec
Q psy11337 133 PFWRIS 138 (155)
Q Consensus 133 PFwrI~ 138 (155)
+++-+.
T Consensus 181 ~~i~~~ 186 (221)
T PRK10563 181 EVFYFC 186 (221)
T ss_pred EEEEEC
Confidence 998664
No 27
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=96.79 E-value=0.0083 Score=46.13 Aligned_cols=88 Identities=20% Similarity=0.257 Sum_probs=60.8
Q ss_pred HHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccC--h--hhHHHHHHHHhC-CCceEEEe
Q psy11337 43 SLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG--K--DSCFERIVTRFG-RKCTYVVI 117 (155)
Q Consensus 43 s~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G--K--escFerI~~RFG-~k~~yvvI 117 (155)
.-+..+|..+.++ +..=+++|++.- ..-.++=-+|+..+| +.||++..+| | ..+|+.+.+++| ....-++|
T Consensus 108 ~g~~~~l~~L~~~-g~~~~i~Sn~~~-~~~~~l~~~~l~~~f--d~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~I 183 (203)
T TIGR02252 108 PDAIKLLKDLRER-GLILGVISNFDS-RLRGLLEALGLLEYF--DFVVTSYEVGAEKPDPKIFQEALERAGISPEEALHI 183 (203)
T ss_pred cCHHHHHHHHHHC-CCEEEEEeCCch-hHHHHHHHCCcHHhc--ceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEEE
Confidence 3345566666544 455677787652 222333335666666 5788887765 4 468999999998 44778999
Q ss_pred cCCH-HHHHHHHHcCCce
Q psy11337 118 GDGQ-DEEAAAKQRNFPF 134 (155)
Q Consensus 118 GDG~-eEe~aAk~~~~PF 134 (155)
||.. ..-+||++.||..
T Consensus 184 gD~~~~Di~~A~~aG~~~ 201 (203)
T TIGR02252 184 GDSLRNDYQGARAAGWRA 201 (203)
T ss_pred CCCchHHHHHHHHcCCee
Confidence 9997 5789999999874
No 28
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=96.78 E-value=0.023 Score=38.62 Aligned_cols=42 Identities=12% Similarity=0.018 Sum_probs=35.6
Q ss_pred cChhhHHHHHHHHhCCC-ceEEEecCCHHHHHHHHHcCCceeE
Q psy11337 95 IGKDSCFERIVTRFGRK-CTYVVIGDGQDEEAAAKQRNFPFWR 136 (155)
Q Consensus 95 ~GKescFerI~~RFG~k-~~yvvIGDG~eEe~aAk~~~~PFwr 136 (155)
.+|...++++.++++.+ -..+.|||+....++|+.++++.+-
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~ 138 (139)
T cd01427 96 KPNPDKLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVA 138 (139)
T ss_pred CCCHHHHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceee
Confidence 35789999999999754 6678999999999999999998653
No 29
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=96.69 E-value=0.027 Score=47.37 Aligned_cols=93 Identities=19% Similarity=0.231 Sum_probs=68.3
Q ss_pred HHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccc-cChhhHHHHHHHHhC-CCceEEEecCCH
Q psy11337 44 LAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTK-IGKDSCFERIVTRFG-RKCTYVVIGDGQ 121 (155)
Q Consensus 44 ~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k-~GKescFerI~~RFG-~k~~yvvIGDG~ 121 (155)
-+...|+.+.++ +..-.+||++.-...-.++=-+||..+|.. |.++.. ..|...|+++.+++| ..-.-++|||+.
T Consensus 146 g~~e~L~~L~~~-gi~laIvSn~~~~~~~~~L~~~gl~~~F~~--vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~IGDs~ 222 (273)
T PRK13225 146 GVADLLAQLRSR-SLCLGILSSNSRQNIEAFLQRQGLRSLFSV--VQAGTPILSKRRALSQLVAREGWQPAAVMYVGDET 222 (273)
T ss_pred CHHHHHHHHHHC-CCeEEEEeCCCHHHHHHHHHHcCChhheEE--EEecCCCCCCHHHHHHHHHHhCcChhHEEEECCCH
Confidence 456666666554 455667888775544444445778888863 555544 347899999999997 446789999999
Q ss_pred HHHHHHHHcCCceeEecc
Q psy11337 122 DEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 122 eEe~aAk~~~~PFwrI~~ 139 (155)
.--+||++.||.+.-|..
T Consensus 223 ~Di~aA~~AG~~~I~v~~ 240 (273)
T PRK13225 223 RDVEAARQVGLIAVAVTW 240 (273)
T ss_pred HHHHHHHHCCCeEEEEec
Confidence 999999999999977654
No 30
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=96.59 E-value=0.02 Score=51.41 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=72.0
Q ss_pred HHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccC----hhhHHHHHHHHhC-CCceEEE
Q psy11337 42 LSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG----KDSCFERIVTRFG-RKCTYVV 116 (155)
Q Consensus 42 Ls~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G----KescFerI~~RFG-~k~~yvv 116 (155)
..-+...|+.+..+ +.--.|+|+..-.-.-.++=-+||..+|. -|+++..++ +...|....+++| +.-.-++
T Consensus 218 ~pGa~ElL~~Lk~~-GiklaIaSn~~~~~~~~~L~~lgL~~yFd--~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl~ 294 (381)
T PLN02575 218 RTGSQEFVNVLMNY-KIPMALVSTRPRKTLENAIGSIGIRGFFS--VIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCIV 294 (381)
T ss_pred CcCHHHHHHHHHHC-CCeEEEEeCCCHHHHHHHHHHcCCHHHce--EEEecCcCCCCCCCHHHHHHHHHHcCCCcccEEE
Confidence 33455666666554 56677888877333333333367778876 488877653 5579999999998 4567888
Q ss_pred ecCCHHHHHHHHHcCCceeEecccccHH
Q psy11337 117 IGDGQDEEAAAKQRNFPFWRISSRSDLA 144 (155)
Q Consensus 117 IGDG~eEe~aAk~~~~PFwrI~~~~Dl~ 144 (155)
|||...--+||+..||+++-|....+..
T Consensus 295 IGDS~~DIeAAk~AGm~~IgV~~~~~~~ 322 (381)
T PLN02575 295 FGNSNQTVEAAHDARMKCVAVASKHPIY 322 (381)
T ss_pred EcCCHHHHHHHHHcCCEEEEECCCCChh
Confidence 9999999999999999999997643443
No 31
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=96.34 E-value=0.055 Score=45.43 Aligned_cols=97 Identities=14% Similarity=0.086 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHH-hhcccccccCcccccccc--Ch--hhHHHHHHHHhC-CCceE
Q psy11337 41 WLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIML-FGLSGIFDVENIYSSTKI--GK--DSCFERIVTRFG-RKCTY 114 (155)
Q Consensus 41 WLs~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LL-ygL~~~fpieNIYSa~k~--GK--escFerI~~RFG-~k~~y 114 (155)
...-+..+|+.+.++ +.-=.+||++. .+.+.++|= ++...+|..-.++++..+ +| ..+|.++.+++| ..-..
T Consensus 145 l~pGv~elL~~L~~~-g~~l~IvTn~~-~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~~ 222 (286)
T PLN02779 145 LRPGVLRLMDEALAA-GIKVAVCSTSN-EKAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSRC 222 (286)
T ss_pred chhhHHHHHHHHHHC-CCeEEEEeCCC-HHHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHHE
Confidence 344566777777655 44455666653 344444432 111233433233344433 45 459999999998 34678
Q ss_pred EEecCCHHHHHHHHHcCCceeEecc
Q psy11337 115 VVIGDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 115 vvIGDG~eEe~aAk~~~~PFwrI~~ 139 (155)
++|||+..--+||++.||+++-+..
T Consensus 223 l~IGDs~~Di~aA~~aG~~~i~v~~ 247 (286)
T PLN02779 223 VVVEDSVIGLQAAKAAGMRCIVTKS 247 (286)
T ss_pred EEEeCCHHhHHHHHHcCCEEEEEcc
Confidence 8999999999999999999998855
No 32
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=96.29 E-value=0.034 Score=49.37 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=68.3
Q ss_pred HHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccc---cChhhHHHHHHHHhCCCceEEEecCCHH
Q psy11337 46 IKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTK---IGKDSCFERIVTRFGRKCTYVVIGDGQD 122 (155)
Q Consensus 46 ~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k---~GKescFerI~~RFG~k~~yvvIGDG~e 122 (155)
...|+.+.++ +.--.++|+++---.-.++=-+++..+|+. |.++-. .+|...|..+.++++++ .-++|||...
T Consensus 336 ~e~L~~Lk~~-g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~--i~~~d~v~~~~kP~~~~~al~~l~~~-~~v~VGDs~~ 411 (459)
T PRK06698 336 KEIFTYIKEN-NCSIYIASNGLTEYLRAIVSYYDLDQWVTE--TFSIEQINSLNKSDLVKSILNKYDIK-EAAVVGDRLS 411 (459)
T ss_pred HHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHCCcHhhcce--eEecCCCCCCCCcHHHHHHHHhcCcc-eEEEEeCCHH
Confidence 4445555443 567788999887666666666778777743 555543 26889999999999875 6799999999
Q ss_pred HHHHHHHcCCceeEecc
Q psy11337 123 EEAAAKQRNFPFWRISS 139 (155)
Q Consensus 123 Ee~aAk~~~~PFwrI~~ 139 (155)
.-+|||+.||+++-+..
T Consensus 412 Di~aAk~AG~~~I~v~~ 428 (459)
T PRK06698 412 DINAAKDNGLIAIGCNF 428 (459)
T ss_pred HHHHHHHCCCeEEEEeC
Confidence 99999999999988854
No 33
>PLN02940 riboflavin kinase
Probab=96.26 E-value=0.022 Score=50.00 Aligned_cols=92 Identities=17% Similarity=0.200 Sum_probs=68.2
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCchHHHHHHH-HhhcccccccCccccccccC--h--hhHHHHHHHHhC-CCceEEEec
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLIPALSKIM-LFGLSGIFDVENIYSSTKIG--K--DSCFERIVTRFG-RKCTYVVIG 118 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~L-LygL~~~fpieNIYSa~k~G--K--escFerI~~RFG-~k~~yvvIG 118 (155)
+..+|+.+.++ +..-.++|++.-.....++. .+++..+|+. |+++..++ | ...|.++.+++| +...-++||
T Consensus 98 v~elL~~Lk~~-g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~--ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~l~VG 174 (382)
T PLN02940 98 ANRLIKHLKSH-GVPMALASNSPRANIEAKISCHQGWKESFSV--IVGGDEVEKGKPSPDIFLEAAKRLNVEPSNCLVIE 174 (382)
T ss_pred HHHHHHHHHHC-CCcEEEEeCCcHHHHHHHHHhccChHhhCCE--EEehhhcCCCCCCHHHHHHHHHHcCCChhHEEEEe
Confidence 34455555544 55667888876444444555 5788888864 67766543 4 589999999998 456788899
Q ss_pred CCHHHHHHHHHcCCceeEecc
Q psy11337 119 DGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 119 DG~eEe~aAk~~~~PFwrI~~ 139 (155)
|...--+||++.||+++-|..
T Consensus 175 Ds~~Di~aA~~aGi~~I~v~~ 195 (382)
T PLN02940 175 DSLPGVMAGKAAGMEVIAVPS 195 (382)
T ss_pred CCHHHHHHHHHcCCEEEEECC
Confidence 999999999999999999875
No 34
>PLN02811 hydrolase
Probab=96.26 E-value=0.032 Score=44.13 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=66.4
Q ss_pred HHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHH-HhhcccccccCcccccc--cc--Ch--hhHHHHHHHHhC---CC-
Q psy11337 43 SLAIKCLTLINQRPSCTNVIVITTQLIPALSKIM-LFGLSGIFDVENIYSST--KI--GK--DSCFERIVTRFG---RK- 111 (155)
Q Consensus 43 s~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~L-LygL~~~fpieNIYSa~--k~--GK--escFerI~~RFG---~k- 111 (155)
.-+..+|+.+.++ ++.-.+||+.+---...+.+ ..++..+|. -|+++. .+ +| ...|...++++| -+
T Consensus 81 ~gv~e~l~~L~~~-g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~--~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 157 (220)
T PLN02811 81 PGAERLVRHLHAK-GIPIAIATGSHKRHFDLKTQRHGELFSLMH--HVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVDP 157 (220)
T ss_pred ccHHHHHHHHHHC-CCcEEEEeCCchhhHHHHHcccHHHHhhCC--EEEECChhhccCCCCCcHHHHHHHHHhCCCCCCc
Confidence 3455666666554 67778888876432333333 235666664 467776 44 34 469999999997 33
Q ss_pred ceEEEecCCHHHHHHHHHcCCceeEecc
Q psy11337 112 CTYVVIGDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 112 ~~yvvIGDG~eEe~aAk~~~~PFwrI~~ 139 (155)
-..++|||...--+||++.||++.-+..
T Consensus 158 ~~~v~IgDs~~di~aA~~aG~~~i~v~~ 185 (220)
T PLN02811 158 GKVLVFEDAPSGVEAAKNAGMSVVMVPD 185 (220)
T ss_pred cceEEEeccHhhHHHHHHCCCeEEEEeC
Confidence 4589999999999999999999999965
No 35
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=96.19 E-value=0.063 Score=42.91 Aligned_cols=90 Identities=17% Similarity=0.137 Sum_probs=60.4
Q ss_pred HHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCcccccccc--C--hhhHHHHHHHHhC-CCceEEEecCC
Q psy11337 46 IKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKI--G--KDSCFERIVTRFG-RKCTYVVIGDG 120 (155)
Q Consensus 46 ~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~--G--KescFerI~~RFG-~k~~yvvIGDG 120 (155)
..+|+.+.++ +..-.++|+..--....++=-+++..+|.+ |+++..+ + +..+|.++.+++| ....-++|||+
T Consensus 101 ~~~L~~L~~~-g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~--i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l~IGDs 177 (229)
T PRK13226 101 EGMLQRLECA-GCVWGIVTNKPEYLARLILPQLGWEQRCAV--LIGGDTLAERKPHPLPLLVAAERIGVAPTDCVYVGDD 177 (229)
T ss_pred HHHHHHHHHC-CCeEEEECCCCHHHHHHHHHHcCchhcccE--EEecCcCCCCCCCHHHHHHHHHHhCCChhhEEEeCCC
Confidence 3344444333 445568888754322222223566677753 5555433 3 5678999999998 45678999999
Q ss_pred HHHHHHHHHcCCceeEec
Q psy11337 121 QDEEAAAKQRNFPFWRIS 138 (155)
Q Consensus 121 ~eEe~aAk~~~~PFwrI~ 138 (155)
...-+|||..||++.-+.
T Consensus 178 ~~Di~aA~~aG~~~i~v~ 195 (229)
T PRK13226 178 ERDILAARAAGMPSVAAL 195 (229)
T ss_pred HHHHHHHHHCCCcEEEEe
Confidence 999999999999997664
No 36
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=96.16 E-value=0.039 Score=43.34 Aligned_cols=91 Identities=18% Similarity=0.221 Sum_probs=63.6
Q ss_pred HHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccC----hhhHHHHHHHHhCCC-ceEEEecCC
Q psy11337 46 IKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG----KDSCFERIVTRFGRK-CTYVVIGDG 120 (155)
Q Consensus 46 ~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G----KescFerI~~RFG~k-~~yvvIGDG 120 (155)
...|+.+.++ +.--++||++.-.-.-..+=-+++..+|. .++++-.+| +...|+++.+++|-+ -.-++|||.
T Consensus 98 ~~~l~~l~~~-g~~~~i~S~~~~~~~~~~l~~~~l~~~f~--~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~igDs 174 (222)
T PRK10826 98 REALALCKAQ-GLKIGLASASPLHMLEAVLTMFDLRDYFD--ALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCVALEDS 174 (222)
T ss_pred HHHHHHHHHC-CCeEEEEeCCcHHHHHHHHHhCcchhccc--EEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCC
Confidence 3444444443 45567777766432222222377888874 688876643 346999999999854 667899999
Q ss_pred HHHHHHHHHcCCceeEecc
Q psy11337 121 QDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 121 ~eEe~aAk~~~~PFwrI~~ 139 (155)
...-+||++.|+++.-+..
T Consensus 175 ~~Di~aA~~aG~~~i~v~~ 193 (222)
T PRK10826 175 FNGMIAAKAARMRSIVVPA 193 (222)
T ss_pred hhhHHHHHHcCCEEEEecC
Confidence 9999999999999988864
No 37
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=95.99 E-value=0.073 Score=39.05 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=52.8
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCc--hHHHHHHHHhhcccccccCccccccccC---hhhHHHHHHHHhCCCceEEEecC
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQL--IPALSKIMLFGLSGIFDVENIYSSTKIG---KDSCFERIVTRFGRKCTYVVIGD 119 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qL--VpaLaK~LLygL~~~fpieNIYSa~k~G---KescFerI~~RFG~k~~yvvIGD 119 (155)
+.+.|+.+.++ +.--.+||++.- +..+.+.+ ++.+|. -|+++..++ +...|.++.+++|-+..-++|||
T Consensus 69 ~~e~l~~L~~~-g~~~~i~T~~~~~~~~~~~~~~---l~~~f~--~i~~~~~~~~Kp~~~~~~~~~~~~~~~~~~l~iGD 142 (154)
T TIGR01549 69 AADLLKRLKEA-GIKLGIISNGSLRAQKLLLRKH---LGDYFD--LILGSDEFGAKPEPEIFLAALESLGLPPEVLHVGD 142 (154)
T ss_pred HHHHHHHHHHC-cCeEEEEeCCchHHHHHHHHHH---HHhcCc--EEEecCCCCCCcCHHHHHHHHHHcCCCCCEEEEeC
Confidence 56666666554 455677776652 22222322 555554 345444333 56889999999985338899999
Q ss_pred CHHHHHHHHHcC
Q psy11337 120 GQDEEAAAKQRN 131 (155)
Q Consensus 120 G~eEe~aAk~~~ 131 (155)
....-+||++.|
T Consensus 143 s~~Di~aa~~aG 154 (154)
T TIGR01549 143 NLNDIEGARNAG 154 (154)
T ss_pred CHHHHHHHHHcc
Confidence 998889998764
No 38
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=95.96 E-value=0.077 Score=42.57 Aligned_cols=100 Identities=10% Similarity=0.065 Sum_probs=66.3
Q ss_pred HHHhhhhcCCCceEEEEeCC-CchHHHHHHH--Hhhcc---------cccccCccccccccCh----hhHHHHHHHHh--
Q psy11337 47 KCLTLINQRPSCTNVIVITT-QLIPALSKIM--LFGLS---------GIFDVENIYSSTKIGK----DSCFERIVTRF-- 108 (155)
Q Consensus 47 k~L~~i~~r~~~vNVLVTt~-qLVpaLaK~L--LygL~---------~~fpieNIYSa~k~GK----escFerI~~RF-- 108 (155)
..|+.+.+ .+..-.++|+. +-- .++-. .+++. .+| +.|+++.+.+| ..+++.+.+++
T Consensus 52 elL~~Lk~-~G~~l~I~Sn~~~~~--~~~~~L~~~~l~~~~~~~~~~~~F--d~iv~~~~~~~~kp~~~i~~~~~~~~~~ 126 (174)
T TIGR01685 52 DVLQTLKD-AGTYLATASWNDVPE--WAYEILGTFEITYAGKTVPMHSLF--DDRIEIYKPNKAKQLEMILQKVNKVDPS 126 (174)
T ss_pred HHHHHHHH-CCCEEEEEeCCCChH--HHHHHHHhCCcCCCCCcccHHHhc--eeeeeccCCchHHHHHHHHHHhhhcccC
Confidence 34444433 24555677766 322 22222 34554 666 67888877665 45566676666
Q ss_pred C-CCceEEEecCCHHHHHHHHHcCCceeEecccccHHHHHHHhh
Q psy11337 109 G-RKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAALYHALD 151 (155)
Q Consensus 109 G-~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L~~al~ 151 (155)
| ....-++|||...--+||++.|++++-+..-.++...-.-||
T Consensus 127 gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g~~~~~~~~~~~ 170 (174)
T TIGR01685 127 VLKPAQILFFDDRTDNVREVWGYGVTSCYCPSGMDKGTFKKILE 170 (174)
T ss_pred CCCHHHeEEEcChhHhHHHHHHhCCEEEEcCCCccHHHHHHHHH
Confidence 3 558899999999999999999999999988766666544444
No 39
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=95.89 E-value=0.064 Score=40.00 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=33.2
Q ss_pred cChhhHHHHHHHHhCCCceEEEecCCHHHHHHHHHcCCceeE
Q psy11337 95 IGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAAKQRNFPFWR 136 (155)
Q Consensus 95 ~GKescFerI~~RFG~k~~yvvIGDG~eEe~aAk~~~~PFwr 136 (155)
..|..+++++++++ .-.-+.||||..--+||+..++-|-|
T Consensus 148 ~~K~~~~~~~~~~~--~~~~i~iGD~~~D~~aa~~~d~~~ar 187 (188)
T TIGR01489 148 CCKGKVIHKLSEPK--YQHIIYIGDGVTDVCPAKLSDVVFAK 187 (188)
T ss_pred CCHHHHHHHHHhhc--CceEEEECCCcchhchHhcCCccccC
Confidence 45999999999887 45567789999999999999888754
No 40
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=95.81 E-value=0.052 Score=40.97 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=56.7
Q ss_pred eEEEEeCCCchHHHHHHHHhhcccccccCccccccccC----hhhHHHHHHHHhCC-CceEEEecCCHHHHHHHHHcCCc
Q psy11337 59 TNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG----KDSCFERIVTRFGR-KCTYVVIGDGQDEEAAAKQRNFP 133 (155)
Q Consensus 59 vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G----KescFerI~~RFG~-k~~yvvIGDG~eEe~aAk~~~~P 133 (155)
.-.|+|++.---.-.++=-+|+..+|.. |.++-.++ +...|+++.+|+|- .-.-++|||..---+||+..|++
T Consensus 104 ~l~I~T~~~~~~~~~~l~~~~l~~~fd~--i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~igDs~~di~aA~~aG~~ 181 (188)
T PRK10725 104 PMAVGTGSESAIAEALLAHLGLRRYFDA--VVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVFEDADFGIQAARAAGMD 181 (188)
T ss_pred CEEEEcCCchHHHHHHHHhCCcHhHceE--EEehhhccCCCCChHHHHHHHHHcCCCHHHeEEEeccHhhHHHHHHCCCE
Confidence 3455666543333444555888888864 77775543 56789999999984 34567789999999999999999
Q ss_pred eeEec
Q psy11337 134 FWRIS 138 (155)
Q Consensus 134 FwrI~ 138 (155)
+.-+.
T Consensus 182 ~i~~~ 186 (188)
T PRK10725 182 AVDVR 186 (188)
T ss_pred EEeec
Confidence 98664
No 41
>PRK11587 putative phosphatase; Provisional
Probab=95.81 E-value=0.083 Score=41.58 Aligned_cols=93 Identities=15% Similarity=0.126 Sum_probs=64.2
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCcccccccc----ChhhHHHHHHHHhC-CCceEEEecC
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKI----GKDSCFERIVTRFG-RKCTYVVIGD 119 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~----GKescFerI~~RFG-~k~~yvvIGD 119 (155)
+...|+.+.++ +.--.+||++.--....++-..++. .| +-|+++-.+ .+..+|..+.+++| ..-.-++|||
T Consensus 88 ~~e~L~~L~~~-g~~~~ivTn~~~~~~~~~l~~~~l~-~~--~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l~igD 163 (218)
T PRK11587 88 AIALLNHLNKL-GIPWAIVTSGSVPVASARHKAAGLP-AP--EVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVVVED 163 (218)
T ss_pred HHHHHHHHHHc-CCcEEEEcCCCchHHHHHHHhcCCC-Cc--cEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEEEEec
Confidence 45555555444 4556778887654444444445653 33 345655332 35689999999998 4466788999
Q ss_pred CHHHHHHHHHcCCceeEecccc
Q psy11337 120 GQDEEAAAKQRNFPFWRISSRS 141 (155)
Q Consensus 120 G~eEe~aAk~~~~PFwrI~~~~ 141 (155)
...--+||++.|++++-+....
T Consensus 164 s~~di~aA~~aG~~~i~v~~~~ 185 (218)
T PRK11587 164 APAGVLSGLAAGCHVIAVNAPA 185 (218)
T ss_pred chhhhHHHHHCCCEEEEECCCC
Confidence 9999999999999999997643
No 42
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=95.73 E-value=0.057 Score=43.50 Aligned_cols=86 Identities=16% Similarity=0.252 Sum_probs=64.5
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccC----hhhHHHHHHHHhC-CCceEEEecC
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG----KDSCFERIVTRFG-RKCTYVVIGD 119 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G----KescFerI~~RFG-~k~~yvvIGD 119 (155)
+..+|+.+.++ ..=+++|++.--. =.+||..+|. .|+++...| +...|+.+.+++| ..-.-++|||
T Consensus 118 v~~~L~~L~~~--~~l~i~Tn~~~~~-----~~~gl~~~fd--~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~VGD 188 (238)
T PRK10748 118 THDTLKQLAKK--WPLVAITNGNAQP-----ELFGLGDYFE--FVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHVGD 188 (238)
T ss_pred HHHHHHHHHcC--CCEEEEECCCchH-----HHCCcHHhhc--eeEecccCCcCCCcHHHHHHHHHHcCCChhHEEEEcC
Confidence 45566666543 4566789976432 3468888884 788887653 5779999999998 5568999999
Q ss_pred C-HHHHHHHHHcCCceeEecc
Q psy11337 120 G-QDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 120 G-~eEe~aAk~~~~PFwrI~~ 139 (155)
. ..--+||++.||.+.-|..
T Consensus 189 ~~~~Di~~A~~aG~~~i~v~~ 209 (238)
T PRK10748 189 DLTTDVAGAIRCGMQACWINP 209 (238)
T ss_pred CcHHHHHHHHHCCCeEEEEcC
Confidence 9 4778899999999988764
No 43
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=95.72 E-value=0.093 Score=43.59 Aligned_cols=91 Identities=11% Similarity=0.162 Sum_probs=61.0
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCchHHHHHHH-HhhcccccccCccccccc----cChhhHHHHHHHHhCC-CceEEEec
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLIPALSKIM-LFGLSGIFDVENIYSSTK----IGKDSCFERIVTRFGR-KCTYVVIG 118 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~L-LygL~~~fpieNIYSa~k----~GKescFerI~~RFG~-k~~yvvIG 118 (155)
+...|+.+.++ +..-+++|++.- +.+.++| -++++.+|+. |+++-. ..+...|+++.+++|- .-.-++||
T Consensus 106 ~~e~L~~Lk~~-g~~l~ivTn~~~-~~~~~~l~~~~i~~~f~~--i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l~IG 181 (272)
T PRK13223 106 VRDTLKWLKKQ-GVEMALITNKPE-RFVAPLLDQMKIGRYFRW--IIGGDTLPQKKPDPAALLFVMKMAGVPPSQSLFVG 181 (272)
T ss_pred HHHHHHHHHHC-CCeEEEEECCcH-HHHHHHHHHcCcHhhCeE--EEecCCCCCCCCCcHHHHHHHHHhCCChhHEEEEC
Confidence 34555555443 344456666543 3333332 3677787763 666543 2255799999999984 45677899
Q ss_pred CCHHHHHHHHHcCCceeEecc
Q psy11337 119 DGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 119 DG~eEe~aAk~~~~PFwrI~~ 139 (155)
|+...-++|++.||+++-+..
T Consensus 182 D~~~Di~aA~~aGi~~i~v~~ 202 (272)
T PRK13223 182 DSRSDVLAAKAAGVQCVALSY 202 (272)
T ss_pred CCHHHHHHHHHCCCeEEEEec
Confidence 999999999999999887754
No 44
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=95.51 E-value=0.1 Score=40.50 Aligned_cols=88 Identities=11% Similarity=0.136 Sum_probs=53.9
Q ss_pred HHHHhhhhcCCCceEEEEeCCCchHHHHHHH-Hhhccccccc-----Cccccc-----cc--cChhhHHHHHHHHhCCC-
Q psy11337 46 IKCLTLINQRPSCTNVIVITTQLIPALSKIM-LFGLSGIFDV-----ENIYSS-----TK--IGKDSCFERIVTRFGRK- 111 (155)
Q Consensus 46 ~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~L-LygL~~~fpi-----eNIYSa-----~k--~GKescFerI~~RFG~k- 111 (155)
...|+.+.++ +..-++||++. -+.+..++ -+|+..+|.. +++|.. .. .+|...|+++.+++|-+
T Consensus 91 ~~~l~~l~~~-g~~~~IvS~~~-~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 168 (219)
T TIGR00338 91 EELVKTLKEK-GYKVAVISGGF-DLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRKEGISP 168 (219)
T ss_pred HHHHHHHHHC-CCEEEEECCCc-HHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHHHcCCCH
Confidence 3344444433 34446667664 33322222 3677776643 223221 11 24899999999999733
Q ss_pred ceEEEecCCHHHHHHHHHcCCcee
Q psy11337 112 CTYVVIGDGQDEEAAAKQRNFPFW 135 (155)
Q Consensus 112 ~~yvvIGDG~eEe~aAk~~~~PFw 135 (155)
..-++|||+..--+||++.++|+.
T Consensus 169 ~~~i~iGDs~~Di~aa~~ag~~i~ 192 (219)
T TIGR00338 169 ENTVAVGDGANDLSMIKAAGLGIA 192 (219)
T ss_pred HHEEEEECCHHHHHHHHhCCCeEE
Confidence 344568999988999999999974
No 45
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=95.25 E-value=0.23 Score=35.86 Aligned_cols=89 Identities=20% Similarity=0.307 Sum_probs=55.5
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCc-------hHHHHHHH-HhhcccccccCccccccccC--hhhHHHHHHHHhC--CCc
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQL-------IPALSKIM-LFGLSGIFDVENIYSSTKIG--KDSCFERIVTRFG--RKC 112 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qL-------VpaLaK~L-LygL~~~fpieNIYSa~k~G--KescFerI~~RFG--~k~ 112 (155)
+..+|+.+.. .++.=+++|+..- -..+.+.+ -+++. |. -+|++...+ +.+.|+++.++++ +.-
T Consensus 30 v~~~l~~L~~-~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~--~~--~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 104 (132)
T TIGR01662 30 VPDALAELKE-AGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP--ID--VLYACPHCRKPKPGMFLEALKRFNEIDPE 104 (132)
T ss_pred HHHHHHHHHH-CCCEEEEEECCccccccHHHHHHHHHHHHHCCCC--EE--EEEECCCCCCCChHHHHHHHHHcCCCChh
Confidence 3444544433 3566778888761 22222222 23443 21 223332333 5689999999994 557
Q ss_pred eEEEecC-CHHHHHHHHHcCCceeEec
Q psy11337 113 TYVVIGD-GQDEEAAAKQRNFPFWRIS 138 (155)
Q Consensus 113 ~yvvIGD-G~eEe~aAk~~~~PFwrI~ 138 (155)
.-++||| -...-++|+++||+++-+.
T Consensus 105 ~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 105 ESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred heEEEcCCCcccHHHHHHCCCeEEEee
Confidence 7889999 4777889999999998764
No 46
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=95.08 E-value=0.19 Score=41.39 Aligned_cols=89 Identities=13% Similarity=0.152 Sum_probs=56.7
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHh-----hcccccccCccccccc--cChhhHHHHHHHHhC-CCceEEE
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLIPALSKIMLF-----GLSGIFDVENIYSSTK--IGKDSCFERIVTRFG-RKCTYVV 116 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLy-----gL~~~fpieNIYSa~k--~GKescFerI~~RFG-~k~~yvv 116 (155)
+..+|+...++ +.--.++||++.- ..|.++- +|..+| +.+++..- -.+...|++|.+++| +.-.-++
T Consensus 100 v~e~L~~Lk~~-G~~l~I~Sn~s~~--~~~~~~~~~~~~~L~~~f--~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e~lf 174 (220)
T TIGR01691 100 VPPALEAWLQL-GLRLAVYSSGSVP--AQKLLFGHSDAGNLTPYF--SGYFDTTVGLKTEAQSYVKIAGQLGSPPREILF 174 (220)
T ss_pred HHHHHHHHHHC-CCEEEEEeCCCHH--HHHHHHhhccccchhhhc--ceEEEeCcccCCCHHHHHHHHHHhCcChhHEEE
Confidence 34445445443 4556778887542 2333321 232332 22333221 225789999999998 4466889
Q ss_pred ecCCHHHHHHHHHcCCceeEec
Q psy11337 117 IGDGQDEEAAAKQRNFPFWRIS 138 (155)
Q Consensus 117 IGDG~eEe~aAk~~~~PFwrI~ 138 (155)
|||...+-+||++.||++.-+.
T Consensus 175 VgDs~~Di~AA~~AG~~ti~v~ 196 (220)
T TIGR01691 175 LSDIINELDAARKAGLHTGQLV 196 (220)
T ss_pred EeCCHHHHHHHHHcCCEEEEEE
Confidence 9999999999999999987764
No 47
>PRK06769 hypothetical protein; Validated
Probab=94.88 E-value=0.35 Score=37.55 Aligned_cols=96 Identities=14% Similarity=0.109 Sum_probs=60.2
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCch--------HHHHHHHHhhcccccccCc-cccccc--cChhhHHHHHHHHhCC-Cc
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLI--------PALSKIMLFGLSGIFDVEN-IYSSTK--IGKDSCFERIVTRFGR-KC 112 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLV--------paLaK~LLygL~~~fpieN-IYSa~k--~GKescFerI~~RFG~-k~ 112 (155)
+...|+.+.++ ..-=.++|+..-+ +...++-.+|+..+|.... ..+... -.+...|..+.+|+|- .-
T Consensus 33 v~e~L~~Lk~~-G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~ 111 (173)
T PRK06769 33 TKASLQKLKAN-HIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEKHGLDLT 111 (173)
T ss_pred HHHHHHHHHHC-CCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHHcCCCHH
Confidence 45666666555 4556677776532 1222222334433321110 001112 2356799999999984 46
Q ss_pred eEEEecCCHHHHHHHHHcCCceeEecccc
Q psy11337 113 TYVVIGDGQDEEAAAKQRNFPFWRISSRS 141 (155)
Q Consensus 113 ~yvvIGDG~eEe~aAk~~~~PFwrI~~~~ 141 (155)
.-++|||...--+||++.||.++-+....
T Consensus 112 ~~i~IGD~~~Di~aA~~aGi~~i~v~~g~ 140 (173)
T PRK06769 112 QCAVIGDRWTDIVAAAKVNATTILVRTGA 140 (173)
T ss_pred HeEEEcCCHHHHHHHHHCCCeEEEEecCC
Confidence 78999999999999999999999998643
No 48
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=94.58 E-value=0.25 Score=37.37 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=35.2
Q ss_pred ChhhHHHHHHHHhCC-CceEEEecCCHHHHHHHHHcCCceeEe
Q psy11337 96 GKDSCFERIVTRFGR-KCTYVVIGDGQDEEAAAKQRNFPFWRI 137 (155)
Q Consensus 96 GKescFerI~~RFG~-k~~yvvIGDG~eEe~aAk~~~~PFwrI 137 (155)
+|...++++.+++|- .-.-++|||+..--++|+..++||.-.
T Consensus 147 ~k~~~~~~~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~ 189 (201)
T TIGR01491 147 NKGEAVERLKRELNPSLTETVAVGDSKNDLPMFEVADISISLG 189 (201)
T ss_pred cHHHHHHHHHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEEC
Confidence 466789999999984 456788999999999999999999753
No 49
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=94.52 E-value=0.29 Score=37.80 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=59.4
Q ss_pred HHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCcccccccc---ChhhHHHHHHHHhCCC-ceEEEecCCH
Q psy11337 46 IKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKI---GKDSCFERIVTRFGRK-CTYVVIGDGQ 121 (155)
Q Consensus 46 ~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~---GKescFerI~~RFG~k-~~yvvIGDG~ 121 (155)
...|+.+..+ +..-.++|++.-.-.-.++=-+||..+|+ .++++..+ .+...|+.+.++.|-+ ..-++|||+.
T Consensus 112 ~~~L~~l~~~-g~~~~i~T~~~~~~~~~~l~~~gl~~~f~--~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~vGD~~ 188 (197)
T TIGR01548 112 KGLLRELHRA-PKGMAVVTGRPRKDAAKFLTTHGLEILFP--VQIWMEDCPPKPNPEPLILAAKALGVEACHAAMVGDTV 188 (197)
T ss_pred HHHHHHHHHc-CCcEEEECCCCHHHHHHHHHHcCchhhCC--EEEeecCCCCCcCHHHHHHHHHHhCcCcccEEEEeCCH
Confidence 5666666544 56668899887665555555678888884 67766543 3578999999999844 5678999999
Q ss_pred HHHHHHHH
Q psy11337 122 DEEAAAKQ 129 (155)
Q Consensus 122 eEe~aAk~ 129 (155)
.--+||++
T Consensus 189 ~Di~aA~~ 196 (197)
T TIGR01548 189 DDIITGRK 196 (197)
T ss_pred HHHHHHHh
Confidence 88888875
No 50
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=94.22 E-value=0.64 Score=35.74 Aligned_cols=45 Identities=16% Similarity=0.125 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHhCC-CceEEEecCCHHHHHHHHHcCCceeEecccc
Q psy11337 97 KDSCFERIVTRFGR-KCTYVVIGDGQDEEAAAKQRNFPFWRISSRS 141 (155)
Q Consensus 97 KescFerI~~RFG~-k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~ 141 (155)
+...|..+.+++|- .-.-++|||....-++|+..||++|-+....
T Consensus 105 ~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~ 150 (181)
T PRK08942 105 KPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGK 150 (181)
T ss_pred CHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCC
Confidence 36899999999984 4677889999999999999999999997643
No 51
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=93.96 E-value=0.48 Score=36.97 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=39.2
Q ss_pred ChhhHHHHHHHHhC-CCceEEEecCCHHHHHHHHHcCCceeEecc
Q psy11337 96 GKDSCFERIVTRFG-RKCTYVVIGDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 96 GKescFerI~~RFG-~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~ 139 (155)
.|...|+.+.+++| .+-.-++|||+...-++|++.||++..++.
T Consensus 104 P~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~ 148 (161)
T TIGR01261 104 PKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYDE 148 (161)
T ss_pred CCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEECh
Confidence 56799999999998 556788999999999999999999998875
No 52
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=93.64 E-value=0.79 Score=38.46 Aligned_cols=113 Identities=16% Similarity=0.058 Sum_probs=70.3
Q ss_pred ccccCChhhHHHHHHHHHHhHHhhhHHHHHHHHHHhhhhcCCCceEEEEeCC---CchHHHHHHH-HhhcccccccCccc
Q psy11337 15 ACGLLGPAKREEWLQLRAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITT---QLIPALSKIM-LFGLSGIFDVENIY 90 (155)
Q Consensus 15 v~~Ll~~~~r~~w~~lr~e~e~~Td~WLs~A~k~L~~i~~r~~~vNVLVTt~---qLVpaLaK~L-LygL~~~fpieNIY 90 (155)
+.-++|++-++.|.+..++-...-.+ |..+|+...+| +.-=.+||+. +--+.+..++ -+|+..+|+. ||
T Consensus 93 ~~~l~g~~~w~~~~~~~~~~s~p~~~----a~elL~~l~~~-G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~--i~ 165 (237)
T TIGR01672 93 EDYLKNQVFWEKVNNGWDEFSIPKEV----ARQLIDMHQRR-GDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPV--IF 165 (237)
T ss_pred hhhhcChHHHHHHHHhcccCCcchhH----HHHHHHHHHHC-CCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeE--EE
Confidence 34566777777777666321111111 77777777765 3334567775 2333333433 3788888865 56
Q ss_pred ccccc--ChhhHHHHHHHHhCCCceEEEecCCHHHHHHHHHcCCceeEec
Q psy11337 91 SSTKI--GKDSCFERIVTRFGRKCTYVVIGDGQDEEAAAKQRNFPFWRIS 138 (155)
Q Consensus 91 Sa~k~--GKescFerI~~RFG~k~~yvvIGDG~eEe~aAk~~~~PFwrI~ 138 (155)
+.... .|..-..++ +++|- + +.|||...--+|||..++++.++.
T Consensus 166 ~~d~~~~~Kp~~~~~l-~~~~i-~--i~vGDs~~DI~aAk~AGi~~I~V~ 211 (237)
T TIGR01672 166 AGDKPGQYQYTKTQWI-QDKNI-R--IHYGDSDNDITAAKEAGARGIRIL 211 (237)
T ss_pred CCCCCCCCCCCHHHHH-HhCCC-e--EEEeCCHHHHHHHHHCCCCEEEEE
Confidence 65543 344444333 55664 3 789999999999999999999985
No 53
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=93.55 E-value=0.91 Score=35.16 Aligned_cols=87 Identities=11% Similarity=0.053 Sum_probs=56.4
Q ss_pred HHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHHhC-CCceEEEecCCH-HH
Q psy11337 46 IKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFG-RKCTYVVIGDGQ-DE 123 (155)
Q Consensus 46 ~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RFG-~k~~yvvIGDG~-eE 123 (155)
...|+.+.++ +..-+++|+..- ...++-++=.++-.+ |+...-.+..+|+.+.+++| +.-.-++|||.. ..
T Consensus 49 ~e~L~~Lk~~-g~~l~I~Sn~~~-~~~~~~~~~~~gl~~-----~~~~~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~D 121 (170)
T TIGR01668 49 RDWIEELKAA-GRKLLIVSNNAG-EQRAKAVEKALGIPV-----LPHAVKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTD 121 (170)
T ss_pred HHHHHHHHHc-CCEEEEEeCCch-HHHHHHHHHHcCCEE-----EcCCCCCChHHHHHHHHHcCCCHHHEEEECCcchHH
Confidence 3444444333 355677777642 344444442333211 22222346789999999998 457788999997 57
Q ss_pred HHHHHHcCCceeEecc
Q psy11337 124 EAAAKQRNFPFWRISS 139 (155)
Q Consensus 124 e~aAk~~~~PFwrI~~ 139 (155)
-+||+.+||++.-|..
T Consensus 122 i~aA~~aGi~~i~v~~ 137 (170)
T TIGR01668 122 VMGGNRNGSYTILVEP 137 (170)
T ss_pred HHHHHHcCCeEEEEcc
Confidence 9999999999998865
No 54
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=93.44 E-value=0.1 Score=42.42 Aligned_cols=80 Identities=15% Similarity=0.206 Sum_probs=54.4
Q ss_pred eEEEEeC-CCchHHHHHHHHhhcccccc-cCcccccc--ccCh--hhHHHHHHHHhCCC--ceEEEecCCHH-HHHHHHH
Q psy11337 59 TNVIVIT-TQLIPALSKIMLFGLSGIFD-VENIYSST--KIGK--DSCFERIVTRFGRK--CTYVVIGDGQD-EEAAAKQ 129 (155)
Q Consensus 59 vNVLVTt-~qLVpaLaK~LLygL~~~fp-ieNIYSa~--k~GK--escFerI~~RFG~k--~~yvvIGDG~e-Ee~aAk~ 129 (155)
+-.++|+ ..+.|.-.-.+.++.+.+|. ++++.+.. -.|| ...|+.+.+++|-+ -++++|||..+ .=++|++
T Consensus 146 ~~~i~tN~d~~~~~~~g~~~~~~g~~~~~i~~~~g~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~ 225 (236)
T TIGR01460 146 VPFIAANRDDLVRLGDGRFRPGAGAIAAGIKELSGREPTVVGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKN 225 (236)
T ss_pred CeEEEECCCCCCCCCCCcEeecchHHHHHHHHHhCceeeeecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHH
Confidence 6778888 44444322245566676665 34444433 1454 78999999999833 34689999984 6779999
Q ss_pred cCCceeEec
Q psy11337 130 RNFPFWRIS 138 (155)
Q Consensus 130 ~~~PFwrI~ 138 (155)
.||++.-+.
T Consensus 226 ~G~~~i~v~ 234 (236)
T TIGR01460 226 AGFDTLLVL 234 (236)
T ss_pred CCCcEEEEe
Confidence 999988774
No 55
>PLN02954 phosphoserine phosphatase
Probab=93.20 E-value=1.2 Score=34.78 Aligned_cols=40 Identities=33% Similarity=0.474 Sum_probs=32.6
Q ss_pred cChhhHHHHHHHHhCCCceEEEecCCHHHHHHHHHcCCcee
Q psy11337 95 IGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAAKQRNFPFW 135 (155)
Q Consensus 95 ~GKescFerI~~RFG~k~~yvvIGDG~eEe~aAk~~~~PFw 135 (155)
.+|..+++++++++|.+ .-++|||+.---+||+..++.+.
T Consensus 154 ~~K~~~i~~~~~~~~~~-~~i~iGDs~~Di~aa~~~~~~~~ 193 (224)
T PLN02954 154 GGKAEAVQHIKKKHGYK-TMVMIGDGATDLEARKPGGADLF 193 (224)
T ss_pred ccHHHHHHHHHHHcCCC-ceEEEeCCHHHHHhhhcCCCCEE
Confidence 46999999999999854 56778999999999888666643
No 56
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=92.99 E-value=0.98 Score=34.74 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHhC-CCceEEEecCCHHHHHHHHHcCCce-eEecc
Q psy11337 97 KDSCFERIVTRFG-RKCTYVVIGDGQDEEAAAKQRNFPF-WRISS 139 (155)
Q Consensus 97 KescFerI~~RFG-~k~~yvvIGDG~eEe~aAk~~~~PF-wrI~~ 139 (155)
+...|.++.+|+| ..-.-++|||...--+||++.|+++ .=+..
T Consensus 108 ~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~ 152 (176)
T TIGR00213 108 KPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRT 152 (176)
T ss_pred CHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEec
Confidence 5789999999998 4456667999999999999999998 44443
No 57
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=92.92 E-value=0.95 Score=33.59 Aligned_cols=81 Identities=12% Similarity=0.138 Sum_probs=51.1
Q ss_pred HHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHH--hh-------cccccccCccccccccChhhHHHHHHHHhC---CC
Q psy11337 44 LAIKCLTLINQRPSCTNVIVITTQLIPALSKIML--FG-------LSGIFDVENIYSSTKIGKDSCFERIVTRFG---RK 111 (155)
Q Consensus 44 ~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LL--yg-------L~~~fpieNIYSa~k~GKescFerI~~RFG---~k 111 (155)
-+..+|+.+.++ +..=+++|++.-- ..++-++ ++ +..+| +.++++-...|-.+|..+.+++| +.
T Consensus 33 gv~e~L~~Lk~~-g~~l~i~Sn~~~~-~~~~~~l~~~~~~~~i~~l~~~f--~~~~~~~~~pkp~~~~~a~~~lg~~~~p 108 (128)
T TIGR01681 33 EIRDKLQTLKKN-GFLLALASYNDDP-HVAYELLKIFEDFGIIFPLAEYF--DPLTIGYWLPKSPRLVEIALKLNGVLKP 108 (128)
T ss_pred HHHHHHHHHHHC-CeEEEEEeCCCCH-HHHHHHHHhccccccchhhHhhh--hhhhhcCCCcHHHHHHHHHHHhcCCCCc
Confidence 345555555443 3444566666333 3333333 23 44444 45666645689999999999999 66
Q ss_pred ceEEEecCCHHH-HHHHH
Q psy11337 112 CTYVVIGDGQDE-EAAAK 128 (155)
Q Consensus 112 ~~yvvIGDG~eE-e~aAk 128 (155)
-.-++|||.... ++.+|
T Consensus 109 ~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 109 KSILFVDDRPDNNEEVDY 126 (128)
T ss_pred ceEEEECCCHhHHHHHHh
Confidence 788899999888 44443
No 58
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=92.87 E-value=0.72 Score=36.02 Aligned_cols=86 Identities=15% Similarity=0.158 Sum_probs=52.5
Q ss_pred HHHHhhhhcCCCceEEEEeCCCchH----------HHHHHHHhhcccccccCccccccc--cCh--hhHHHHHHHHhC--
Q psy11337 46 IKCLTLINQRPSCTNVIVITTQLIP----------ALSKIMLFGLSGIFDVENIYSSTK--IGK--DSCFERIVTRFG-- 109 (155)
Q Consensus 46 ~k~L~~i~~r~~~vNVLVTt~qLVp----------aLaK~LLygL~~~fpieNIYSa~k--~GK--escFerI~~RFG-- 109 (155)
..+|+.+.+ .+.--++||+.+-.. ..+.-+|=.+|-.+ ..++++.. ..| ...|+++.+++|
T Consensus 48 ~e~L~~Lk~-~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~--~~ii~~~~~~~~KP~p~~~~~~~~~~~~~ 124 (166)
T TIGR01664 48 PAKLQELDD-EGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPI--QVLAATHAGLYRKPMTGMWEYLQSQYNSP 124 (166)
T ss_pred HHHHHHHHH-CCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCE--EEEEecCCCCCCCCccHHHHHHHHHcCCC
Confidence 344444433 356667888865420 11222333333222 33443332 345 569999999998
Q ss_pred -CCceEEEecCCH--------HHHHHHHHcCCce
Q psy11337 110 -RKCTYVVIGDGQ--------DEEAAAKQRNFPF 134 (155)
Q Consensus 110 -~k~~yvvIGDG~--------eEe~aAk~~~~PF 134 (155)
..-.-++|||.. ..-+||++.|++|
T Consensus 125 ~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~ 158 (166)
T TIGR01664 125 IKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEF 158 (166)
T ss_pred CCchhcEEEECCCCCCCCCchhHHHHHHHCCCCc
Confidence 345789999985 4778999999998
No 59
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=92.62 E-value=1.9 Score=43.12 Aligned_cols=99 Identities=17% Similarity=0.211 Sum_probs=70.2
Q ss_pred HHHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcc-cccccCccccccccC--h--hhHHHHHHHHhCC-CceE
Q psy11337 41 WLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLS-GIFDVENIYSSTKIG--K--DSCFERIVTRFGR-KCTY 114 (155)
Q Consensus 41 WLs~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~-~~fpieNIYSa~k~G--K--escFerI~~RFG~-k~~y 114 (155)
+..-+..+|+.+.++ +.--.++|++.-.-.-.++=-+|+. .+| +-|+++-.++ | ..+|+.+.+++|- .-.-
T Consensus 162 ~~pG~~elL~~Lk~~-G~~l~IvSn~~~~~~~~~L~~~gl~~~~F--d~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~ 238 (1057)
T PLN02919 162 GFPGALELITQCKNK-GLKVAVASSADRIKVDANLAAAGLPLSMF--DAIVSADAFENLKPAPDIFLAAAKILGVPTSEC 238 (1057)
T ss_pred cCccHHHHHHHHHhC-CCeEEEEeCCcHHHHHHHHHHcCCChhHC--CEEEECcccccCCCCHHHHHHHHHHcCcCcccE
Confidence 455677777777665 4566778887644332222224553 344 4677776654 3 5899999999984 4678
Q ss_pred EEecCCHHHHHHHHHcCCceeEeccccc
Q psy11337 115 VVIGDGQDEEAAAKQRNFPFWRISSRSD 142 (155)
Q Consensus 115 vvIGDG~eEe~aAk~~~~PFwrI~~~~D 142 (155)
++|||...--+||+..||+++-+....+
T Consensus 239 v~IgDs~~Di~AA~~aGm~~I~v~~~~~ 266 (1057)
T PLN02919 239 VVIEDALAGVQAARAAGMRCIAVTTTLS 266 (1057)
T ss_pred EEEcCCHHHHHHHHHcCCEEEEECCCCC
Confidence 8899999999999999999999976433
No 60
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=92.34 E-value=0.96 Score=35.45 Aligned_cols=75 Identities=12% Similarity=0.160 Sum_probs=50.6
Q ss_pred CceEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHHhCCC-ceEEEecCCHHHHHHHHHcCCcee
Q psy11337 57 SCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFGRK-CTYVVIGDGQDEEAAAKQRNFPFW 135 (155)
Q Consensus 57 ~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RFG~k-~~yvvIGDG~eEe~aAk~~~~PFw 135 (155)
..--+++|+..-- .++-++=.++ ++.+|+ ...+|...|+++.+++|-+ -.-++|||+.-.-.+|+..++++.
T Consensus 64 Gi~v~I~T~~~~~--~v~~~l~~lg----l~~~f~-g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~~ 136 (183)
T PRK09484 64 GIEVAIITGRKSK--LVEDRMTTLG----ITHLYQ-GQSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSVA 136 (183)
T ss_pred CCEEEEEeCCCcH--HHHHHHHHcC----Cceeec-CCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeEe
Confidence 3334466666442 2233332222 334444 3356999999999999854 578889999999999999999965
Q ss_pred Eecc
Q psy11337 136 RISS 139 (155)
Q Consensus 136 rI~~ 139 (155)
+..
T Consensus 137 -v~~ 139 (183)
T PRK09484 137 -VAD 139 (183)
T ss_pred -cCC
Confidence 543
No 61
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=92.14 E-value=2.1 Score=32.04 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=37.4
Q ss_pred cChhhHHHHHHHHhCCC-ceEEEecCCHHHHHHHHHcCCceeEec
Q psy11337 95 IGKDSCFERIVTRFGRK-CTYVVIGDGQDEEAAAKQRNFPFWRIS 138 (155)
Q Consensus 95 ~GKescFerI~~RFG~k-~~yvvIGDG~eEe~aAk~~~~PFwrI~ 138 (155)
-.+...|+.+++++|-+ -.-++|||....-++|+..||+.+-|.
T Consensus 101 KP~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~ 145 (147)
T TIGR01656 101 KPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLV 145 (147)
T ss_pred CCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEEec
Confidence 35788999999999855 457789999999999999999988663
No 62
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=92.13 E-value=0.29 Score=33.00 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=37.6
Q ss_pred hhHHHHHHHHhC-CCceEEEecCC-HHHHHHHHHcCCceeEecc
Q psy11337 98 DSCFERIVTRFG-RKCTYVVIGDG-QDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 98 escFerI~~RFG-~k~~yvvIGDG-~eEe~aAk~~~~PFwrI~~ 139 (155)
...|+.+.+++| .....++|||. ...-++|+++||.++-|.+
T Consensus 7 p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~t 50 (75)
T PF13242_consen 7 PGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLT 50 (75)
T ss_dssp HHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESS
T ss_pred HHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECC
Confidence 468999999997 56889999999 8888899999999999887
No 63
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=91.30 E-value=0.3 Score=40.06 Aligned_cols=45 Identities=20% Similarity=0.337 Sum_probs=38.2
Q ss_pred cCh--hhHHHHHHHHhC-CCceEEEecCCH-HHHHHHHHcCCceeEecc
Q psy11337 95 IGK--DSCFERIVTRFG-RKCTYVVIGDGQ-DEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 95 ~GK--escFerI~~RFG-~k~~yvvIGDG~-eEe~aAk~~~~PFwrI~~ 139 (155)
.|| ...|+.+.+++| +.-..++|||.. ..-.+|++.||+++-|..
T Consensus 176 ~gKP~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~ 224 (249)
T TIGR01457 176 IGKPNAIIMEKAVEHLGTEREETLMVGDNYLTDIRAGIDAGIDTLLVHT 224 (249)
T ss_pred cCCChHHHHHHHHHHcCCCcccEEEECCCchhhHHHHHHcCCcEEEEcC
Confidence 455 679999999998 456799999997 578899999999998875
No 64
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=90.92 E-value=0.27 Score=40.58 Aligned_cols=80 Identities=18% Similarity=0.190 Sum_probs=52.7
Q ss_pred EEEEeCCCchHHHHHHHHhhcccccc-cCcccc--ccccChh--hHHHHHHHHhC-CCceEEEecCCH-HHHHHHHHcCC
Q psy11337 60 NVIVITTQLIPALSKIMLFGLSGIFD-VENIYS--STKIGKD--SCFERIVTRFG-RKCTYVVIGDGQ-DEEAAAKQRNF 132 (155)
Q Consensus 60 NVLVTt~qLVpaLaK~LLygL~~~fp-ieNIYS--a~k~GKe--scFerI~~RFG-~k~~yvvIGDG~-eEe~aAk~~~~ 132 (155)
-+++|+............+|++.+|. ++..-+ ..-.||- ..|+.+.+++| +.-..++|||.. ..-.+|++.||
T Consensus 139 ~~iatn~~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G~ 218 (257)
T TIGR01458 139 LLIAIGKGRYYKRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAVMIGDDCRDDVGGAQDCGM 218 (257)
T ss_pred EEEEeCCCCCCcCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEEEECCCcHHHHHHHHHcCC
Confidence 34555554443333334567777774 122111 1113654 48999999998 557789999996 56779999999
Q ss_pred ceeEecc
Q psy11337 133 PFWRISS 139 (155)
Q Consensus 133 PFwrI~~ 139 (155)
+.+-|..
T Consensus 219 ~~i~v~~ 225 (257)
T TIGR01458 219 RGIQVRT 225 (257)
T ss_pred eEEEECC
Confidence 9998864
No 65
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=90.77 E-value=0.36 Score=39.99 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=63.9
Q ss_pred HHHHHHHHHhhhhcCCCceEEEEeCCCchHHHHH-HHHhhccccccc-Cccccc--cccChhh--HHHHHHHHhC-CCce
Q psy11337 41 WLSLAIKCLTLINQRPSCTNVIVITTQLIPALSK-IMLFGLSGIFDV-ENIYSS--TKIGKDS--CFERIVTRFG-RKCT 113 (155)
Q Consensus 41 WLs~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK-~LLygL~~~fpi-eNIYSa--~k~GKes--cFerI~~RFG-~k~~ 113 (155)
|..-+..+++.+.++. + =.++|+....-...+ ...++++.+|.. +.+.+. ...||-+ -|+.+++++| +.-.
T Consensus 144 ~y~~i~~~l~~L~~~g-~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~ 221 (279)
T TIGR01452 144 SYAKLREACAHLREPG-C-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPAR 221 (279)
T ss_pred CHHHHHHHHHHHhcCC-C-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhh
Confidence 4555566677775543 3 367777665322223 345677777653 322221 2357765 7899999998 5567
Q ss_pred EEEecCCH-HHHHHHHHcCCceeEecc
Q psy11337 114 YVVIGDGQ-DEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 114 yvvIGDG~-eEe~aAk~~~~PFwrI~~ 139 (155)
-++|||.. ---++|++.||++.-+..
T Consensus 222 ~lmIGD~~~tDI~~A~~aGi~si~V~~ 248 (279)
T TIGR01452 222 TLMVGDRLETDILFGHRCGMTTVLVLS 248 (279)
T ss_pred EEEECCChHHHHHHHHHcCCcEEEECC
Confidence 88899995 457799999999988865
No 66
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=90.41 E-value=1.3 Score=35.11 Aligned_cols=79 Identities=9% Similarity=0.100 Sum_probs=61.3
Q ss_pred EEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHHhCC-CceEEEecCCHHHHHHHHHcCCceeEecc
Q psy11337 61 VIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFGR-KCTYVVIGDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 61 VLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RFG~-k~~yvvIGDG~eEe~aAk~~~~PFwrI~~ 139 (155)
.++|+..--.+-..+=-+|+..+|.. .| .|...|+.+.+++|- .-.-++|||+.---++++..+++|-.-++
T Consensus 54 aIiT~k~~~~~~~~l~~lgi~~~f~~------~k-pkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~nA 126 (169)
T TIGR02726 54 AIITSKKSGAVRHRAEELKIKRFHEG------IK-KKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVGDA 126 (169)
T ss_pred EEEECCCcHHHHHHHHHCCCcEEEec------CC-CCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEECcCc
Confidence 45666655544444445677777752 23 788999999999984 45788999999999999999999999999
Q ss_pred cccHHHH
Q psy11337 140 RSDLAAL 146 (155)
Q Consensus 140 ~~Dl~~L 146 (155)
++++.+.
T Consensus 127 ~~~lk~~ 133 (169)
T TIGR02726 127 VADVKEA 133 (169)
T ss_pred hHHHHHh
Confidence 9888765
No 67
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=89.41 E-value=4.3 Score=31.00 Aligned_cols=92 Identities=11% Similarity=0.192 Sum_probs=55.0
Q ss_pred HHHHHHhhhhcCCCceEEEEeCCCchHHHHHHH-Hhhccccccc------Ccccccc-------ccChhhHHHHHHHHhC
Q psy11337 44 LAIKCLTLINQRPSCTNVIVITTQLIPALSKIM-LFGLSGIFDV------ENIYSST-------KIGKDSCFERIVTRFG 109 (155)
Q Consensus 44 ~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~L-LygL~~~fpi------eNIYSa~-------k~GKescFerI~~RFG 109 (155)
.+.+.++...+ +...|.|-|+..-+.+..++ .+|+..+|.. ++.|+.. ..+|....+++.++.|
T Consensus 91 ~~~~~l~~l~~--~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~~~~ 168 (202)
T TIGR01490 91 EARDLIRWHKA--EGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLAEEQ 168 (202)
T ss_pred HHHHHHHHHHH--CCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHHHcC
Confidence 44555554433 33444444444444333332 2466666644 2233321 1346666888888887
Q ss_pred CC-ceEEEecCCHHHHHHHHHcCCceeEe
Q psy11337 110 RK-CTYVVIGDGQDEEAAAKQRNFPFWRI 137 (155)
Q Consensus 110 ~k-~~yvvIGDG~eEe~aAk~~~~PFwrI 137 (155)
-. -.-++|||+...-++++..+.|++..
T Consensus 169 ~~~~~~~~~gDs~~D~~~~~~a~~~~~v~ 197 (202)
T TIGR01490 169 IDLKDSYAYGDSISDLPLLSLVGHPYVVN 197 (202)
T ss_pred CCHHHcEeeeCCcccHHHHHhCCCcEEeC
Confidence 54 24467899999999999999999864
No 68
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=88.85 E-value=0.53 Score=35.21 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=46.8
Q ss_pred EEEeCCCchHHHHHHHHhhcccccccCccccccccC--h--hhHHHHHHHHhCC-CceEEEecCCHHHHHHHHH
Q psy11337 61 VIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG--K--DSCFERIVTRFGR-KCTYVVIGDGQDEEAAAKQ 129 (155)
Q Consensus 61 VLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G--K--escFerI~~RFG~-k~~yvvIGDG~eEe~aAk~ 129 (155)
.++|++.---.-.++=-++|..+|. .|+|+-.+| | ..+|+++.+|+|- .-.-++|||..---+|||+
T Consensus 103 ~i~Tn~~~~~~~~~l~~~~l~~~fd--~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~vgD~~~Di~~A~~ 174 (175)
T TIGR01493 103 AILSNASHWAFDQFAQQAGLPWYFD--RAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLMVAAHQWDLIGARK 174 (175)
T ss_pred hhhhCCCHHHHHHHHHHCCCHHHHh--hhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEeEecChhhHHHHhc
Confidence 4677775433333333456777764 588887654 4 7799999999984 4667889999777778875
No 69
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=88.28 E-value=3 Score=31.79 Aligned_cols=86 Identities=9% Similarity=0.110 Sum_probs=55.3
Q ss_pred HHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHHhC-CCceEEEecCCHHHHHH
Q psy11337 48 CLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFG-RKCTYVVIGDGQDEEAA 126 (155)
Q Consensus 48 ~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RFG-~k~~yvvIGDG~eEe~a 126 (155)
+++.+.++ ++.=+++|+..--.+...+=-+|+..+| ... .+|..-++++.+++| ..-.-++|||+.---++
T Consensus 36 ~i~~Lk~~-G~~i~IvTn~~~~~~~~~l~~~gi~~~~------~~~-~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~ 107 (154)
T TIGR01670 36 GIRCALKS-GIEVAIITGRKAKLVEDRCKTLGITHLY------QGQ-SNKLIAFSDILEKLALAPENVAYIGDDLIDWPV 107 (154)
T ss_pred HHHHHHHC-CCEEEEEECCCCHHHHHHHHHcCCCEEE------ecc-cchHHHHHHHHHHcCCCHHHEEEECCCHHHHHH
Confidence 34444333 4444567777654332222233444444 333 479999999999998 54667889999999999
Q ss_pred HHHcCCceeEecccc
Q psy11337 127 AKQRNFPFWRISSRS 141 (155)
Q Consensus 127 Ak~~~~PFwrI~~~~ 141 (155)
++..+++|---..++
T Consensus 108 ~~~ag~~~~v~~~~~ 122 (154)
T TIGR01670 108 MEKVGLSVAVADAHP 122 (154)
T ss_pred HHHCCCeEecCCcCH
Confidence 999999954333443
No 70
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=87.92 E-value=6.9 Score=31.20 Aligned_cols=96 Identities=19% Similarity=0.173 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhhhcCCCceEEEEeC--CCchHHHHHHHHhhcccccccCccccccccCh--hhHHHHHHHHhCCCc-eEE
Q psy11337 41 WLSLAIKCLTLINQRPSCTNVIVIT--TQLIPALSKIMLFGLSGIFDVENIYSSTKIGK--DSCFERIVTRFGRKC-TYV 115 (155)
Q Consensus 41 WLs~A~k~L~~i~~r~~~vNVLVTt--~qLVpaLaK~LLygL~~~fpieNIYSa~k~GK--escFerI~~RFG~k~-~yv 115 (155)
+..-+...|..+.++. .-..+||+ ...+..+.|- +|++.+|+.-=.++.....| -.=...+.+++|... +=+
T Consensus 90 ~~~gv~e~L~~L~~~g-~~l~i~T~k~~~~~~~~l~~--~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l 166 (220)
T COG0546 90 LFPGVKELLAALKSAG-YKLGIVTNKPERELDILLKA--LGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL 166 (220)
T ss_pred cCCCHHHHHHHHHhCC-CeEEEEeCCcHHHHHHHHHH--hCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence 3445566666666654 56677775 3444444433 89999998744444444444 345668889998773 679
Q ss_pred EecCCHHHHHHHHHcCCceeEecc
Q psy11337 116 VIGDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 116 vIGDG~eEe~aAk~~~~PFwrI~~ 139 (155)
.|||....-+|||+.|+|+.-+..
T Consensus 167 ~VGDs~~Di~aA~~Ag~~~v~v~~ 190 (220)
T COG0546 167 MVGDSLNDILAAKAAGVPAVGVTW 190 (220)
T ss_pred EECCCHHHHHHHHHcCCCEEEEEC
Confidence 999999999999999999887766
No 71
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=87.35 E-value=9.8 Score=32.01 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=55.4
Q ss_pred HHHHHhhhhcCCCceEEEEeCCC--chHHHHHHHH--hhc--ccccccCccccccccChhhHHHHHHHHhCCCceEEEec
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQ--LIPALSKIML--FGL--SGIFDVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIG 118 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~q--LVpaLaK~LL--ygL--~~~fpieNIYSa~k~GKescFerI~~RFG~k~~yvvIG 118 (155)
|.++|+...+|. .-=++||+.. .--..++-|+ +|+ ..+|++ +++....+|..=.++++ +.|- =+.||
T Consensus 119 a~elL~~L~~~G-~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~v--il~gd~~~K~~K~~~l~-~~~i---~I~IG 191 (237)
T PRK11009 119 ARQLIDMHVKRG-DSIYFITGRTATKTETVSKTLADDFHIPADNMNPV--IFAGDKPGQYTKTQWLK-KKNI---RIFYG 191 (237)
T ss_pred HHHHHHHHHHCC-CeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeE--EEcCCCCCCCCHHHHHH-hcCC---eEEEc
Confidence 667777776553 3334667642 3333444444 888 777764 55555333333333433 4553 35699
Q ss_pred CCHHHHHHHHHcCCceeEecc
Q psy11337 119 DGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 119 DG~eEe~aAk~~~~PFwrI~~ 139 (155)
|...--+||+..|+++.++.-
T Consensus 192 Ds~~Di~aA~~AGi~~I~v~~ 212 (237)
T PRK11009 192 DSDNDITAAREAGARGIRILR 212 (237)
T ss_pred CCHHHHHHHHHcCCcEEEEec
Confidence 999999999999999998865
No 72
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=87.23 E-value=8.1 Score=31.70 Aligned_cols=93 Identities=8% Similarity=0.129 Sum_probs=56.2
Q ss_pred HHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHH-Hhhccc-ccccCcccccc-------c--cChh--hHHHHHHHHh
Q psy11337 42 LSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIM-LFGLSG-IFDVENIYSST-------K--IGKD--SCFERIVTRF 108 (155)
Q Consensus 42 Ls~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~L-LygL~~-~fpieNIYSa~-------k--~GKe--scFerI~~RF 108 (155)
...+...+....++ ..-=+++|+..-... .+++ -+++.+ +|. -|+++. . .+|- .-.+.+.++.
T Consensus 189 ~~~~~~~l~~l~~~-g~~i~i~T~r~~~~~-~~~l~~l~~~~~~f~--~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~ 264 (300)
T PHA02530 189 NPMVVELVKMYKAA-GYEIIVVSGRDGVCE-EDTVEWLRQTDIWFD--DLIGRPPDMHFQREQGDKRPDDVVKEEIFWEK 264 (300)
T ss_pred ChhHHHHHHHHHhC-CCEEEEEeCCChhhH-HHHHHHHHHcCCchh--hhhCCcchhhhcccCCCCCCcHHHHHHHHHHH
Confidence 44556666666555 555567777665432 2222 234444 443 344443 1 2232 2444444555
Q ss_pred CCC--ceEEEecCCHHHHHHHHHcCCceeEec
Q psy11337 109 GRK--CTYVVIGDGQDEEAAAKQRNFPFWRIS 138 (155)
Q Consensus 109 G~k--~~yvvIGDG~eEe~aAk~~~~PFwrI~ 138 (155)
|.+ -.-++|||....-+||+..|+|++-+.
T Consensus 265 ~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~ 296 (300)
T PHA02530 265 IAPKYDVLLAVDDRDQVVDMWRRIGLECWQVA 296 (300)
T ss_pred hccCceEEEEEcCcHHHHHHHHHhCCeEEEec
Confidence 653 778899999999999999999999884
No 73
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=86.52 E-value=4.4 Score=36.13 Aligned_cols=44 Identities=18% Similarity=0.136 Sum_probs=36.7
Q ss_pred ChhhHHHHHHHHhC-CCceEEEecCCHHHHHHHHHcCCceeEecc
Q psy11337 96 GKDSCFERIVTRFG-RKCTYVVIGDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 96 GKescFerI~~RFG-~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~ 139 (155)
.|..+|..+.++.| ..-.-++|||+.-.-+||+..||+|.-++.
T Consensus 105 P~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~ 149 (354)
T PRK05446 105 PKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIRYAR 149 (354)
T ss_pred CCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEEEEC
Confidence 34568999999886 446677789999999999999999999855
No 74
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=86.07 E-value=1.8 Score=33.88 Aligned_cols=85 Identities=16% Similarity=0.178 Sum_probs=58.8
Q ss_pred EEEeCCCchHHHHHHHHh-hcccccccCc--cccccccChhhHHHHHHHHhCCC-ceEEEecCCHHHHHHHHHcCCceeE
Q psy11337 61 VIVITTQLIPALSKIMLF-GLSGIFDVEN--IYSSTKIGKDSCFERIVTRFGRK-CTYVVIGDGQDEEAAAKQRNFPFWR 136 (155)
Q Consensus 61 VLVTt~qLVpaLaK~LLy-gL~~~fpieN--IYSa~k~GKescFerI~~RFG~k-~~yvvIGDG~eEe~aAk~~~~PFwr 136 (155)
+++.+..-...+.+.+=. ++..++. .. --++..+.|.+..+++.+++|-+ ...++|||+.--.+..+..+++|--
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~~vam 188 (215)
T TIGR01487 110 VIMREGKDVDEVREIIKERGLNLVDS-GFAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFKVAV 188 (215)
T ss_pred EEecCCccHHHHHHHHHhCCeEEEec-CceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCeEEc
Confidence 334455555666665532 2221111 11 12345678999999999999844 4688999999999999999999988
Q ss_pred ecccccHHHH
Q psy11337 137 ISSRSDLAAL 146 (155)
Q Consensus 137 I~~~~Dl~~L 146 (155)
-+.++.+.+.
T Consensus 189 ~na~~~~k~~ 198 (215)
T TIGR01487 189 ANADDQLKEI 198 (215)
T ss_pred CCccHHHHHh
Confidence 8888777664
No 75
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=85.12 E-value=8.7 Score=29.35 Aligned_cols=84 Identities=15% Similarity=0.296 Sum_probs=45.6
Q ss_pred HHHHhhhhcCCCceEEEEeCCCchHHHHHHH-Hhhccccccc-----Cc--cccccc---cChhhHHHHHHHHhCCCceE
Q psy11337 46 IKCLTLINQRPSCTNVIVITTQLIPALSKIM-LFGLSGIFDV-----EN--IYSSTK---IGKDSCFERIVTRFGRKCTY 114 (155)
Q Consensus 46 ~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~L-LygL~~~fpi-----eN--IYSa~k---~GKescFerI~~RFG~k~~y 114 (155)
..+|+.+.++ +.+.|.|+..-...-++| -+|+..+|.. +| +.+..+ .+|..+.+++... + ..=
T Consensus 74 ~e~L~~L~~~---~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~-~--~~~ 147 (205)
T PRK13582 74 VEFLDWLRER---FQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSL-G--YRV 147 (205)
T ss_pred HHHHHHHHhc---CCEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHh-C--CeE
Confidence 4455555554 244444555554444332 2466565542 12 222221 2455565554332 2 344
Q ss_pred EEecCCHHHHHHHHHcCCcee
Q psy11337 115 VVIGDGQDEEAAAKQRNFPFW 135 (155)
Q Consensus 115 vvIGDG~eEe~aAk~~~~PFw 135 (155)
++||||.---++|+..+++.+
T Consensus 148 v~iGDs~~D~~~~~aa~~~v~ 168 (205)
T PRK13582 148 IAAGDSYNDTTMLGEADAGIL 168 (205)
T ss_pred EEEeCCHHHHHHHHhCCCCEE
Confidence 788999988889999998775
No 76
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=84.35 E-value=2 Score=34.68 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=58.1
Q ss_pred HHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccc--cccCh--hhHHHHHHHHhCC--CceEEEe
Q psy11337 44 LAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSS--TKIGK--DSCFERIVTRFGR--KCTYVVI 117 (155)
Q Consensus 44 ~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa--~k~GK--escFerI~~RFG~--k~~yvvI 117 (155)
-...+|..+..+ -+..++|+....-.-.-...++.+.+|..=..++. ...|| ...|+.+.+++|- +-.-++|
T Consensus 142 ~~~~~l~~l~~~--g~~~i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~v 219 (242)
T TIGR01459 142 EFDELFAPIVAR--KIPNICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRMLMV 219 (242)
T ss_pred HHHHHHHHHHhC--CCcEEEECCCEeccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEEEE
Confidence 334445444333 22357777655433334556677777763111222 23576 5689999999973 3468899
Q ss_pred cCCH-HHHHHHHHcCCceeEec
Q psy11337 118 GDGQ-DEEAAAKQRNFPFWRIS 138 (155)
Q Consensus 118 GDG~-eEe~aAk~~~~PFwrI~ 138 (155)
||.. -.-++|++.||++.-+.
T Consensus 220 GD~~~~Di~~a~~~G~~~i~v~ 241 (242)
T TIGR01459 220 GDSFYTDILGANRLGIDTALVL 241 (242)
T ss_pred CCCcHHHHHHHHHCCCeEEEEe
Confidence 9994 56789999999987653
No 77
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=83.86 E-value=4 Score=29.47 Aligned_cols=73 Identities=22% Similarity=0.205 Sum_probs=47.9
Q ss_pred HHHHHHHhhhhcCCCceEEEEeCCCchH--HHHHHHHhhcccccccCccccccccChhhHHHHHHHHhCCCceEEEecCC
Q psy11337 43 SLAIKCLTLINQRPSCTNVIVITTQLIP--ALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDG 120 (155)
Q Consensus 43 s~A~k~L~~i~~r~~~vNVLVTt~qLVp--aLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RFG~k~~yvvIGDG 120 (155)
.-|..+++.+..+. .-=++||+..--+ .+++-| -.+|--++-++|++|.. .+-+.++++++.+..||+-.++
T Consensus 17 pga~e~l~~L~~~g-~~~~~lTNns~~s~~~~~~~L-~~~Gi~~~~~~i~ts~~----~~~~~l~~~~~~~~v~vlG~~~ 90 (101)
T PF13344_consen 17 PGAVEALDALRERG-KPVVFLTNNSSRSREEYAKKL-KKLGIPVDEDEIITSGM----AAAEYLKEHKGGKKVYVLGSDG 90 (101)
T ss_dssp TTHHHHHHHHHHTT-SEEEEEES-SSS-HHHHHHHH-HHTTTT--GGGEEEHHH----HHHHHHHHHTTSSEEEEES-HH
T ss_pred cCHHHHHHHHHHcC-CCEEEEeCCCCCCHHHHHHHH-HhcCcCCCcCEEEChHH----HHHHHHHhcCCCCEEEEEcCHH
Confidence 34666777776663 4457788876555 666666 67777788899999986 4556777778877888877665
Q ss_pred H
Q psy11337 121 Q 121 (155)
Q Consensus 121 ~ 121 (155)
-
T Consensus 91 l 91 (101)
T PF13344_consen 91 L 91 (101)
T ss_dssp H
T ss_pred H
Confidence 3
No 78
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=83.23 E-value=12 Score=32.60 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=41.0
Q ss_pred cChhhHHHHHHHHhC-CCceEEEecCCHHHHHHHHHcCCceeEecccccHHH
Q psy11337 95 IGKDSCFERIVTRFG-RKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAA 145 (155)
Q Consensus 95 ~GKescFerI~~RFG-~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~ 145 (155)
.+|..+++++.+++| +.-.=++||||..--.+++..++++-- +..|.+.+
T Consensus 247 k~K~~~L~~la~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~-nAkp~Vk~ 297 (322)
T PRK11133 247 QYKADTLTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAY-HAKPKVNE 297 (322)
T ss_pred ccHHHHHHHHHHHcCCChhhEEEEECCHHHHHHHHHCCCeEEe-CCCHHHHh
Confidence 579999999999998 445567889999999999999998875 66665543
No 79
>PLN02645 phosphoglycolate phosphatase
Probab=82.86 E-value=1.9 Score=36.56 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=53.7
Q ss_pred ceEEEEeCCCch-HHHHHHHHhhcccccccCccccccc-----cChh--hHHHHHHHHhC-CCceEEEecCCH-HHHHHH
Q psy11337 58 CTNVIVITTQLI-PALSKIMLFGLSGIFDVENIYSSTK-----IGKD--SCFERIVTRFG-RKCTYVVIGDGQ-DEEAAA 127 (155)
Q Consensus 58 ~vNVLVTt~qLV-paLaK~LLygL~~~fpieNIYSa~k-----~GKe--scFerI~~RFG-~k~~yvvIGDG~-eEe~aA 127 (155)
-+=.++|+.... |.-.....+|.|++|.. |+.++. +||- ..|+.+.+++| ++-.-++|||.. -.-++|
T Consensus 187 g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~--i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A 264 (311)
T PLN02645 187 GCLFIATNRDAVTHLTDAQEWAGAGSMVGA--IKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMVGDRLDTDILFG 264 (311)
T ss_pred CCEEEEeCCCCCCCCCCCCCccchHHHHHH--HHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEEcCCcHHHHHHH
Confidence 356677776653 22111234577766642 222221 3654 58999999997 557899999997 567899
Q ss_pred HHcCCceeEecc
Q psy11337 128 KQRNFPFWRISS 139 (155)
Q Consensus 128 k~~~~PFwrI~~ 139 (155)
++.||++.-|.+
T Consensus 265 ~~aG~~~ilV~~ 276 (311)
T PLN02645 265 QNGGCKTLLVLS 276 (311)
T ss_pred HHcCCCEEEEcC
Confidence 999999988743
No 80
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=82.76 E-value=2.5 Score=32.52 Aligned_cols=42 Identities=12% Similarity=0.332 Sum_probs=36.1
Q ss_pred cccChhhHHHHHHHHhC-CCceEEEecCCHHHHHHHHHcCCce
Q psy11337 93 TKIGKDSCFERIVTRFG-RKCTYVVIGDGQDEEAAAKQRNFPF 134 (155)
Q Consensus 93 ~k~GKescFerI~~RFG-~k~~yvvIGDG~eEe~aAk~~~~PF 134 (155)
..++|..+.+.+.+++| ..-.-++|||+.--..+++..++++
T Consensus 160 ~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~v 202 (204)
T TIGR01484 160 AGVDKGSALQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAV 202 (204)
T ss_pred CCCChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCce
Confidence 35789999999999998 4456789999999999999998876
No 81
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=81.64 E-value=3.2 Score=32.35 Aligned_cols=52 Identities=13% Similarity=0.247 Sum_probs=44.3
Q ss_pred ccChhhHHHHHHHHhC-CCceEEEecCCHHHHHHHHHcCCceeEecccccHHH
Q psy11337 94 KIGKDSCFERIVTRFG-RKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAA 145 (155)
Q Consensus 94 k~GKescFerI~~RFG-~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~ 145 (155)
.+.|....+++.+++| ..-.-++|||+.--.+.++..+++|.--+.++.+.+
T Consensus 155 ~~~Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~vk~ 207 (230)
T PRK01158 155 GVNKGTGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVAVANADEELKE 207 (230)
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCceEEecCccHHHHH
Confidence 3569999999999998 446789999999999999999999987777776655
No 82
>COG5439 Uncharacterized conserved protein [Function unknown]
Probab=80.97 E-value=0.97 Score=34.96 Aligned_cols=40 Identities=33% Similarity=0.522 Sum_probs=34.5
Q ss_pred HHHHhCCCceEEEecCCHHHHHHHHHcCCceeEecccccHHHHHHHhhcCC
Q psy11337 104 IVTRFGRKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAALYHALDNGF 154 (155)
Q Consensus 104 I~~RFG~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L~~al~~~~ 154 (155)
|.-|-.++.+|||=|.. ++| |...|.|.|.+||.++++.+
T Consensus 72 ievRk~pd~~fvvrGs~----------~ip-WQ~KSLpNLkkLhP~l~L~~ 111 (112)
T COG5439 72 IEVRKKPDTSFVVRGSK----------NIP-WQMKSLPNLKKLHPDLTLEF 111 (112)
T ss_pred hhhhcCCCceEEEecCC----------CCc-chhccccchHhhCCCceEee
Confidence 55666789999999986 566 89999999999999999876
No 83
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=80.74 E-value=11 Score=34.21 Aligned_cols=76 Identities=16% Similarity=0.071 Sum_probs=40.3
Q ss_pred EEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHH---HHHHhCCCceEEEecCCH----------------
Q psy11337 61 VIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFER---IVTRFGRKCTYVVIGDGQ---------------- 121 (155)
Q Consensus 61 VLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFer---I~~RFG~k~~yvvIGDG~---------------- 121 (155)
+++.....+-++++.|. .||--+.. +...++-++....++ +.++.+.++.-++.+|..
T Consensus 309 ~i~g~~~~~~~l~~fl~-elGm~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~~~d~~e~~~~i~~~~~~~dli 385 (454)
T cd01973 309 AIFGHPDLVIGLAEFCL-EVEMKPVL--LLLGDDNSKYKKDPRIKALKEKADYDMEIVTNADLWELEKRIKNKGLELDLI 385 (454)
T ss_pred EEEcCHHHHHHHHHHHH-HCCCeEEE--EEECCCCcccchhHHHHHHHhhcCCCceEEECCCHHHHHHHHHhcCCCCCEE
Confidence 45555578999999998 65544222 223332233222222 222223333223333333
Q ss_pred ----HHHHHHHHcCCceeEecc
Q psy11337 122 ----DEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 122 ----eEe~aAk~~~~PFwrI~~ 139 (155)
-|..+|++++.||.+++.
T Consensus 386 ig~s~~~~~A~~~gip~~~~g~ 407 (454)
T cd01973 386 LGHSKGRYIAIDNNIPMVRVGF 407 (454)
T ss_pred EECCccHHHHHHcCCCEEEecC
Confidence 335668889999999863
No 84
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=80.53 E-value=11 Score=28.32 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=50.4
Q ss_pred HHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCcccccc--ccChhhHHHHHHHHhC-CCceEEEecCCHH
Q psy11337 46 IKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSST--KIGKDSCFERIVTRFG-RKCTYVVIGDGQD 122 (155)
Q Consensus 46 ~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~--k~GKescFerI~~RFG-~k~~yvvIGDG~e 122 (155)
..+|..+.++ +.--+++|......+-+-.-..|+.. .+||+.. |- ....|.++.++.+ +.-.=++||||.-
T Consensus 133 ~~~l~~L~~~-Gi~~~i~TGD~~~~a~~~~~~lgi~~----~~v~a~~~~kP-~~k~~~~~i~~l~~~~~~v~~vGDg~n 206 (215)
T PF00702_consen 133 KEALQELKEA-GIKVAILTGDNESTASAIAKQLGIFD----SIVFARVIGKP-EPKIFLRIIKELQVKPGEVAMVGDGVN 206 (215)
T ss_dssp HHHHHHHHHT-TEEEEEEESSEHHHHHHHHHHTTSCS----EEEEESHETTT-HHHHHHHHHHHHTCTGGGEEEEESSGG
T ss_pred hhhhhhhhcc-Ccceeeeecccccccccccccccccc----ccccccccccc-cchhHHHHHHHHhcCCCEEEEEccCHH
Confidence 3333334333 23456677676666666555666633 1244443 32 2238999999998 5568899999998
Q ss_pred HHHHHHHcC
Q psy11337 123 EEAAAKQRN 131 (155)
Q Consensus 123 Ee~aAk~~~ 131 (155)
--.|+|+.+
T Consensus 207 D~~al~~Ag 215 (215)
T PF00702_consen 207 DAPALKAAG 215 (215)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhCc
Confidence 888888753
No 85
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=79.14 E-value=4.8 Score=34.54 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=34.9
Q ss_pred hHHHHHHHHhCCCceEEEecCCHHH-H---HHHHHcCCceeE---------------ecccccHHHHHHHhhc
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQDE-E---AAAKQRNFPFWR---------------ISSRSDLAALYHALDN 152 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~eE-e---~aAk~~~~PFwr---------------I~~~~Dl~~L~~al~~ 152 (155)
..|..+.++ .+++.++++|||.+. + +-++++++.+.. +....|+..++.+.|.
T Consensus 251 ~A~~~l~~~-~~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi 322 (425)
T PRK05749 251 DAHRALLKQ-FPNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADI 322 (425)
T ss_pred HHHHHHHHh-CCCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCE
Confidence 445555555 478999999999764 2 244566765433 2334578999988775
No 86
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=78.70 E-value=26 Score=28.25 Aligned_cols=101 Identities=15% Similarity=0.215 Sum_probs=67.4
Q ss_pred HHHHhhhhcCCCceEEEEeCCCchHHHHHHHH--hhcc----------cccccCccccccccChhhHHHHHHHHhC-CCc
Q psy11337 46 IKCLTLINQRPSCTNVIVITTQLIPALSKIML--FGLS----------GIFDVENIYSSTKIGKDSCFERIVTRFG-RKC 112 (155)
Q Consensus 46 ~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LL--ygL~----------~~fpieNIYSa~k~GKescFerI~~RFG-~k~ 112 (155)
...|..+.+ +.+-+-|-|..=-|..||=+| +++. .+|.-.-||.. .|-+=|++|.+.-| +--
T Consensus 51 ~~iL~~L~~--~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g---sK~~Hf~~i~~~tgI~y~ 125 (169)
T PF12689_consen 51 PEILQELKE--RGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG---SKTTHFRRIHRKTGIPYE 125 (169)
T ss_dssp HHHHHHHHH--CT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS----HHHHHHHHHHHH---GG
T ss_pred HHHHHHHHH--CCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecC---chHHHHHHHHHhcCCChh
Confidence 344444433 566677777667788888776 6677 78888888886 67889999999998 557
Q ss_pred eEEEecCCHHHHHHHHHcCCceeEecccccHHHHHHHhh
Q psy11337 113 TYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAALYHALD 151 (155)
Q Consensus 113 ~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L~~al~ 151 (155)
..+-.=|-.-..+..+++|.-|+.+..--....+..+|+
T Consensus 126 eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~~~~~~gL~ 164 (169)
T PF12689_consen 126 EMLFFDDESRNIEVVSKLGVTCVLVPDGLTWDEFERGLE 164 (169)
T ss_dssp GEEEEES-HHHHHHHHTTT-EEEE-SSS--HHHHHHHHH
T ss_pred HEEEecCchhcceeeEecCcEEEEeCCCCCHHHHHHHHH
Confidence 788888888888888889999999988777777777765
No 87
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=78.32 E-value=15 Score=32.46 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=76.2
Q ss_pred ccccCChhhHHHHHHHHHHhHHhhhHHHHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhccccc---ccCccc-
Q psy11337 15 ACGLLGPAKREEWLQLRAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIF---DVENIY- 90 (155)
Q Consensus 15 v~~Ll~~~~r~~w~~lr~e~e~~Td~WLs~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~f---pieNIY- 90 (155)
.+|+-+..-.+.+.+++. |.+..-.+++.++..-.+.-.++|.+|..||-+|=.++ |.--+| +=-|.|
T Consensus 57 sgg~~~~~~~~~~~~~~~-------gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v~~~aA~~~-~~p~~~~~~~esn~~~ 128 (396)
T TIGR03492 57 SGGFSYQSLRGLLRDLRA-------GLVGLTLGQWRALRKWAKKGDLIVAVGDIVPLLFAWLS-GKPYAFVGTAKSDYYW 128 (396)
T ss_pred CCCccCCCHHHHHHHHHh-------hHHHHHHHHHHHHHHHhhcCCEEEEECcHHHHHHHHHc-CCCceEEEeeccceee
Confidence 345555445555555555 67777777777776555556788999999987776544 888888 888988
Q ss_pred -cccccChhhHHHHH--H-------HHh-CCCceEEEecCCHHHHHHHHHcCCceeE
Q psy11337 91 -SSTKIGKDSCFERI--V-------TRF-GRKCTYVVIGDGQDEEAAAKQRNFPFWR 136 (155)
Q Consensus 91 -Sa~k~GKescFerI--~-------~RF-G~k~~yvvIGDG~eEe~aAk~~~~PFwr 136 (155)
|-+-.+..+|+++. . .|. .+.|..|.++|. ++++--++.|.+..-
T Consensus 129 ~~~~~~~~~~~~~~~~G~~~~p~e~n~l~~~~a~~v~~~~~-~t~~~l~~~g~k~~~ 184 (396)
T TIGR03492 129 ESGPRRSPSDEYHRLEGSLYLPWERWLMRSRRCLAVFVRDR-LTARDLRRQGVRASY 184 (396)
T ss_pred cCCCCCccchhhhccCCCccCHHHHHHhhchhhCEEeCCCH-HHHHHHHHCCCeEEE
Confidence 33334566677766 2 355 788999999995 455555666665433
No 88
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=78.02 E-value=7.5 Score=30.84 Aligned_cols=54 Identities=22% Similarity=0.370 Sum_probs=34.2
Q ss_pred hhHHHHHHHHhCCCceEEEecCCHHHHH---HHHHcCCc--eeEecccccHHHHHHHhhc
Q psy11337 98 DSCFERIVTRFGRKCTYVVIGDGQDEEA---AAKQRNFP--FWRISSRSDLAALYHALDN 152 (155)
Q Consensus 98 escFerI~~RFG~k~~yvvIGDG~eEe~---aAk~~~~P--FwrI~~~~Dl~~L~~al~~ 152 (155)
..+|+++.++. +++.++++|+|.++++ .++.++.+ +.-+...+|+..++.+.+.
T Consensus 207 i~a~~~l~~~~-~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~ 265 (360)
T cd04951 207 LKAFAKLLSDY-LDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADL 265 (360)
T ss_pred HHHHHHHHhhC-CCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhce
Confidence 34555555443 6899999999986543 23445543 3445556788877776653
No 89
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=76.97 E-value=5.5 Score=30.84 Aligned_cols=53 Identities=13% Similarity=0.242 Sum_probs=44.6
Q ss_pred ccChhhHHHHHHHHhCC-CceEEEecCCHHHHHHHHHcCCceeEecccccHHHH
Q psy11337 94 KIGKDSCFERIVTRFGR-KCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAAL 146 (155)
Q Consensus 94 k~GKescFerI~~RFG~-k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L 146 (155)
.++|..-++++.+++|- .-.-++|||+.---+..+..+++|--=+.++.+.+.
T Consensus 147 ~~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~~k~~ 200 (225)
T TIGR01482 147 GVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFGVAVANAQPELKEW 200 (225)
T ss_pred CCCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCceEEcCChhHHHHHh
Confidence 47899999999999984 456789999999999999999998777777766553
No 90
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=75.99 E-value=10 Score=30.30 Aligned_cols=54 Identities=22% Similarity=0.417 Sum_probs=36.0
Q ss_pred hhHHHHHHHHhCCCceEEEecCCHHHHH---HHHHcCCc--eeEecccccHHHHHHHhhc
Q psy11337 98 DSCFERIVTRFGRKCTYVVIGDGQDEEA---AAKQRNFP--FWRISSRSDLAALYHALDN 152 (155)
Q Consensus 98 escFerI~~RFG~k~~yvvIGDG~eEe~---aAk~~~~P--FwrI~~~~Dl~~L~~al~~ 152 (155)
.+.|..++++ ++++.+++||+|.+++. .+++++++ +.-+....++..++...+.
T Consensus 211 i~a~~~l~~~-~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi 269 (358)
T cd03812 211 IEIFAELLKK-NPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDV 269 (358)
T ss_pred HHHHHHHHHh-CCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCE
Confidence 3566777665 48999999999986644 44556654 3333447788887776553
No 91
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=74.06 E-value=23 Score=26.35 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=23.3
Q ss_pred ChhhHHHHHHHHh--C-CCceEEEecCCHHHHHHHH
Q psy11337 96 GKDSCFERIVTRF--G-RKCTYVVIGDGQDEEAAAK 128 (155)
Q Consensus 96 GKescFerI~~RF--G-~k~~yvvIGDG~eEe~aAk 128 (155)
||..+++++..+. + ..-..++||||.---.++|
T Consensus 157 ~K~~~l~~~~~~~~~~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 157 GKAEALKELYIRDEEDIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp HHHHHHHHHHHHHHHTHTCCEEEEEESSGGGHHHHH
T ss_pred cHHHHHHHHHHHhhcCCCCCeEEEEECCHHHHHHhC
Confidence 5999999993222 2 4577899999976655543
No 92
>PLN02846 digalactosyldiacylglycerol synthase
Probab=73.94 E-value=9.1 Score=35.31 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=30.9
Q ss_pred hHHHHHHHHhCCCceEEEecCCHHHHH---HHHHcCCceeEecccccHHHHHHHhh
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQDEEA---AAKQRNFPFWRISSRSDLAALYHALD 151 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~eEe~---aAk~~~~PFwrI~~~~Dl~~L~~al~ 151 (155)
..|..|.++. +++.++++|||+++++ .|+++++...-..-..+...++++.|
T Consensus 248 ~a~~~l~~~~-~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~D 302 (462)
T PLN02846 248 KLLHKHQKEL-SGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGRDHADPLFHDYK 302 (462)
T ss_pred HHHHHHHhhC-CCeEEEEECCCccHHHHHHHHHhcCCcEEEECCCCCHHHHHHhCC
Confidence 3455554444 5689999999988754 56677665222233344455666544
No 93
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=73.81 E-value=11 Score=32.04 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=30.1
Q ss_pred hHHHHHHHHhCCCceEEEecCCHHHHHHHH--HcCCceeEecccccHHHHHHHhh
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQDEEAAAK--QRNFPFWRISSRSDLAALYHALD 151 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~eEe~aAk--~~~~PFwrI~~~~Dl~~L~~al~ 151 (155)
.+|..|+++. +++++++||+|.+++..+. ..++-| ...-+|+..++.+.+
T Consensus 248 ~~~~~l~~~~-p~~~l~ivG~g~~~~~~~l~~~~~V~~--~G~v~~~~~~~~~ad 299 (397)
T TIGR03087 248 RVFPAVRARR-PAAEFYIVGAKPSPAVRALAALPGVTV--TGSVADVRPYLAHAA 299 (397)
T ss_pred HHHHHHHHHC-CCcEEEEECCCChHHHHHhccCCCeEE--eeecCCHHHHHHhCC
Confidence 4566676664 7899999999976543222 222222 223457777766554
No 94
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=73.30 E-value=12 Score=30.72 Aligned_cols=54 Identities=28% Similarity=0.525 Sum_probs=35.8
Q ss_pred hHHHHHHHHhC---CCceEEEecCCHHHHH---HHHHcCCc--eeEecccccHHHHHHHhhc
Q psy11337 99 SCFERIVTRFG---RKCTYVVIGDGQDEEA---AAKQRNFP--FWRISSRSDLAALYHALDN 152 (155)
Q Consensus 99 scFerI~~RFG---~k~~yvvIGDG~eEe~---aAk~~~~P--FwrI~~~~Dl~~L~~al~~ 152 (155)
..|..+.++.. ++++++++|||.++++ .++.+++. ++-.....|+..++.+.+.
T Consensus 214 ~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi 275 (374)
T TIGR03088 214 RAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDL 275 (374)
T ss_pred HHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCE
Confidence 45556666553 3799999999975433 45566665 4444567888888877654
No 95
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=73.25 E-value=3.8 Score=32.03 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHhCCCceEEEecCCHHHHHHHHHcCCceeEecccccHHHHHHHh
Q psy11337 97 KDSCFERIVTRFGRKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAALYHAL 150 (155)
Q Consensus 97 KescFerI~~RFG~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L~~al 150 (155)
++.+=..|.+--...|. |+||++. -.+.|+++|+|...|.+-. .++++|+
T Consensus 111 ~~e~~~~i~~~~~~G~~-viVGg~~-~~~~A~~~gl~~v~i~sg~--esi~~Al 160 (176)
T PF06506_consen 111 EEEIEAAIKQAKAEGVD-VIVGGGV-VCRLARKLGLPGVLIESGE--ESIRRAL 160 (176)
T ss_dssp HHHHHHHHHHHHHTT---EEEESHH-HHHHHHHTTSEEEESS--H--HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCc-EEECCHH-HHHHHHHcCCcEEEEEecH--HHHHHHH
Confidence 34444444433333333 6788885 5788999999999997744 4444444
No 96
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=73.10 E-value=25 Score=30.59 Aligned_cols=81 Identities=21% Similarity=0.209 Sum_probs=52.5
Q ss_pred ceEEEEeCCCchHHHHHHHHhhcccccccC-cc----ccccc-cC-hhhHHHHHHHHhCCCceEEEecCCHHH---HHHH
Q psy11337 58 CTNVIVITTQLIPALSKIMLFGLSGIFDVE-NI----YSSTK-IG-KDSCFERIVTRFGRKCTYVVIGDGQDE---EAAA 127 (155)
Q Consensus 58 ~vNVLVTt~qLVpaLaK~LLygL~~~fpie-NI----YSa~k-~G-KescFerI~~RFG~k~~yvvIGDG~eE---e~aA 127 (155)
-+-+++|..|+.|.+..-+.-|++- ..++ .+ -|-.+ .| =...|..+.+++.|++.. |.||.-+. ..||
T Consensus 10 ~~~li~tG~H~~~~~g~~~~~~f~i-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~Vl-v~GD~~~~la~alaA 87 (346)
T PF02350_consen 10 ELILIVTGQHLDPEMGDTFFEGFGI-PKPDYLLDSDSQSMAKSTGLAIIELADVLEREKPDAVL-VLGDRNEALAAALAA 87 (346)
T ss_dssp EEEEEEECSS--CHHHHHHHHHTT---SEEEE--STTS-HHHHHHHHHHHHHHHHHHHT-SEEE-EETTSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHhhCCC-CCCCcccccccchHHHHHHHHHHHHHHHHHhcCCCEEE-EEcCCchHHHHHHHH
Confidence 4778999999999999998877766 2221 11 11111 23 256889999999887765 78999665 4478
Q ss_pred HHcCCceeEeccc
Q psy11337 128 KQRNFPFWRISSR 140 (155)
Q Consensus 128 k~~~~PFwrI~~~ 140 (155)
..+++|+..|..-
T Consensus 88 ~~~~ipv~HieaG 100 (346)
T PF02350_consen 88 FYLNIPVAHIEAG 100 (346)
T ss_dssp HHTT-EEEEES--
T ss_pred HHhCCCEEEecCC
Confidence 9999999999763
No 97
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=72.34 E-value=43 Score=26.96 Aligned_cols=86 Identities=10% Similarity=0.116 Sum_probs=52.1
Q ss_pred HHHHhhhhcCCCceEEEEeCCCchHHHHHHH-HhhcccccccC------cccc----ccccChhhHHHHHHHHhCCCceE
Q psy11337 46 IKCLTLINQRPSCTNVIVITTQLIPALSKIM-LFGLSGIFDVE------NIYS----STKIGKDSCFERIVTRFGRKCTY 114 (155)
Q Consensus 46 ~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~L-LygL~~~fpie------NIYS----a~k~GKescFerI~~RFG~k~~y 114 (155)
..+++...++ ..=++||+ ..-+.+.+++ -+|++.+|..+ +.|+ ..+-+|....+.+. +-|. .-
T Consensus 74 ~ell~~lk~~--~~~~IVS~-~~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~-~~~~--~~ 147 (203)
T TIGR02137 74 VEFVDWLRER--FQVVILSD-TFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFK-SLYY--RV 147 (203)
T ss_pred HHHHHHHHhC--CeEEEEeC-ChHHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHH-hhCC--CE
Confidence 3444444443 33345544 4444333322 24666666643 3443 34567888888874 4453 46
Q ss_pred EEecCCHHHHHHHHHcCCceeEe
Q psy11337 115 VVIGDGQDEEAAAKQRNFPFWRI 137 (155)
Q Consensus 115 vvIGDG~eEe~aAk~~~~PFwrI 137 (155)
++||||..--.+++.-+.|+.-.
T Consensus 148 v~vGDs~nDl~ml~~Ag~~ia~~ 170 (203)
T TIGR02137 148 IAAGDSYNDTTMLSEAHAGILFH 170 (203)
T ss_pred EEEeCCHHHHHHHHhCCCCEEec
Confidence 68899999999999999998643
No 98
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=70.69 E-value=20 Score=28.83 Aligned_cols=62 Identities=23% Similarity=0.370 Sum_probs=42.8
Q ss_pred ccccccChhhHHHHHHHHh---CCCceEEEecCC---HHH--HHHHHHcCCceeEeccccc-HHHHHHHhh
Q psy11337 90 YSSTKIGKDSCFERIVTRF---GRKCTYVVIGDG---QDE--EAAAKQRNFPFWRISSRSD-LAALYHALD 151 (155)
Q Consensus 90 YSa~k~GKescFerI~~RF---G~k~~yvvIGDG---~eE--e~aAk~~~~PFwrI~~~~D-l~~L~~al~ 151 (155)
.+.+.+||-.+--++..+| |+|+..+..-.- .-| ..-|+.+|+||.......| ...+..+++
T Consensus 7 vGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 7 VGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred ECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 4678899999999988888 788888886432 222 2359999999999987764 333444443
No 99
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=70.38 E-value=35 Score=25.17 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=27.0
Q ss_pred ccChhhHHHHHHHHhCC-CceEEEecCCHHHHHHHHH
Q psy11337 94 KIGKDSCFERIVTRFGR-KCTYVVIGDGQDEEAAAKQ 129 (155)
Q Consensus 94 k~GKescFerI~~RFG~-k~~yvvIGDG~eEe~aAk~ 129 (155)
..+|....+++.++.|- .-.-++||||..--.+++.
T Consensus 140 ~~~K~~~l~~~~~~~~~~~~~~~~iGDs~~D~~~~~~ 176 (177)
T TIGR01488 140 GECKGKVLKELLEESKITLKKIIAVGDSVNDLPMLKL 176 (177)
T ss_pred cchHHHHHHHHHHHhCCCHHHEEEEeCCHHHHHHHhc
Confidence 45788899999988863 3356889999877777653
No 100
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=69.59 E-value=6.4 Score=24.17 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=17.8
Q ss_pred CCCceEEEEeCCCchHHHHHHHH
Q psy11337 55 RPSCTNVIVITTQLIPALSKIML 77 (155)
Q Consensus 55 r~~~vNVLVTt~qLVpaLaK~LL 77 (155)
|...+.|.|||+.--|.||+.+=
T Consensus 1 r~g~LqI~ISTnG~sP~la~~iR 23 (30)
T PF14824_consen 1 RRGPLQIAISTNGKSPRLARLIR 23 (30)
T ss_dssp --TTEEEEEEESSS-HHHHHHHH
T ss_pred CCCCeEEEEECCCCChHHHHHHH
Confidence 45678999999999999999863
No 101
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=69.33 E-value=5 Score=29.87 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=36.6
Q ss_pred CchHHHHHHHHhh-c--ccc------cccCcccccccc-ChhhHHHHHHHHhCCCceEEEecCCHH
Q psy11337 67 QLIPALSKIMLFG-L--SGI------FDVENIYSSTKI-GKDSCFERIVTRFGRKCTYVVIGDGQD 122 (155)
Q Consensus 67 qLVpaLaK~LLyg-L--~~~------fpieNIYSa~k~-GKescFerI~~RFG~k~~yvvIGDG~e 122 (155)
||-|.|.+.|-.. + |++ .......++... .|..-.++|.+.| |+..||.|||..+
T Consensus 11 nly~~l~~Fl~~~~~P~G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~f-P~~kfiLIGDsgq 75 (100)
T PF09949_consen 11 NLYPFLRDFLRRNGFPAGPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDF-PERKFILIGDSGQ 75 (100)
T ss_pred HHHHHHHHHHHhcCCCCCceEcccCCccccccccCCchhHHHHHHHHHHHHC-CCCcEEEEeeCCC
Confidence 5666777766432 1 221 112233445554 7999999999999 8889999999754
No 102
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=69.28 E-value=3.6 Score=28.88 Aligned_cols=50 Identities=24% Similarity=0.440 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCceEEEecCCHHHHHHHHHcCCceeEecccccHHHHHHHhhc
Q psy11337 100 CFERIVTRFGRKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAALYHALDN 152 (155)
Q Consensus 100 cFerI~~RFG~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L~~al~~ 152 (155)
+++++.+++ ++++++++|++.++-.....-++-|+.-- +++.++.++.+.
T Consensus 24 ~~~~l~~~~-p~~~l~i~G~~~~~l~~~~~~~v~~~g~~--~e~~~~l~~~dv 73 (135)
T PF13692_consen 24 ALERLKEKH-PDIELIIIGNGPDELKRLRRPNVRFHGFV--EELPEILAAADV 73 (135)
T ss_dssp HHHHHHHHS-TTEEEEEECESS-HHCCHHHCTEEEE-S---HHHHHHHHC-SE
T ss_pred HHHHHHHHC-cCEEEEEEeCCHHHHHHhcCCCEEEcCCH--HHHHHHHHhCCE
Confidence 777888888 78999999999873111113344444433 466666655443
No 103
>PLN02275 transferase, transferring glycosyl groups
Probab=68.98 E-value=11 Score=32.08 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=29.6
Q ss_pred CCCceEEEecCCHHHHH---HHHHcCCc---eeE-ecccccHHHHHHHhhc
Q psy11337 109 GRKCTYVVIGDGQDEEA---AAKQRNFP---FWR-ISSRSDLAALYHALDN 152 (155)
Q Consensus 109 G~k~~yvvIGDG~eEe~---aAk~~~~P---Fwr-I~~~~Dl~~L~~al~~ 152 (155)
.+++.|+++|||.+.++ -+++++.. |.. --.+.|+..++.+.|.
T Consensus 259 ~~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv 309 (371)
T PLN02275 259 YPRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADL 309 (371)
T ss_pred CCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCE
Confidence 36799999999987543 45566654 211 1247888888887764
No 104
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=68.52 E-value=9.8 Score=28.70 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=44.8
Q ss_pred EEEeCCCchHHHHHHHHhhcccccccCcccccccc--ChhhHHHHHHHHhCCC-ceEEEecCCHHHHHHHHHcCCce
Q psy11337 61 VIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKI--GKDSCFERIVTRFGRK-CTYVVIGDGQDEEAAAKQRNFPF 134 (155)
Q Consensus 61 VLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~--GKescFerI~~RFG~k-~~yvvIGDG~eEe~aAk~~~~PF 134 (155)
+++|++.---+-..+=.+++...| ...|+++..+ +|.. |.+..+++|.+ -.-++|||...--++|+..+++.
T Consensus 64 ~I~Ts~~~~~~~~il~~l~~~~~~-f~~i~~~~d~~~~KP~-~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i 138 (148)
T smart00577 64 VVFTAGLRMYADPVLDLLDPKKYF-GYRRLFRDECVFVKGK-YVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPI 138 (148)
T ss_pred EEEeCCcHHHHHHHHHHhCcCCCE-eeeEEECccccccCCe-EeecHHHcCCChhcEEEEECCHHHhhcCccCEEEe
Confidence 455555443222222233443322 2556666544 4666 88888999854 66778999999999998777653
No 105
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=68.03 E-value=34 Score=26.98 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=28.3
Q ss_pred HHHHHHHHhC-CCceEEEecCCHHHHHHHHHcCCceeE
Q psy11337 100 CFERIVTRFG-RKCTYVVIGDGQDEEAAAKQRNFPFWR 136 (155)
Q Consensus 100 cFerI~~RFG-~k~~yvvIGDG~eEe~aAk~~~~PFwr 136 (155)
|...+.++++ .+-.-++||||.---+||+..+++|-|
T Consensus 148 ~K~~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a~ 185 (219)
T PRK09552 148 CKPSLIRKLSDTNDFHIVIGDSITDLEAAKQADKVFAR 185 (219)
T ss_pred chHHHHHHhccCCCCEEEEeCCHHHHHHHHHCCcceeH
Confidence 4556777774 333567899999999999999998773
No 106
>PRK10307 putative glycosyl transferase; Provisional
Probab=67.49 E-value=5.8 Score=33.60 Aligned_cols=43 Identities=26% Similarity=0.441 Sum_probs=28.5
Q ss_pred CCceEEEecCCHHHHH---HHHHcCCc---eeEecccccHHHHHHHhhc
Q psy11337 110 RKCTYVVIGDGQDEEA---AAKQRNFP---FWRISSRSDLAALYHALDN 152 (155)
Q Consensus 110 ~k~~yvvIGDG~eEe~---aAk~~~~P---FwrI~~~~Dl~~L~~al~~ 152 (155)
+++.+++||||.++++ .+++++.+ |.-.-.+.++..++.+.+.
T Consensus 258 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi 306 (412)
T PRK10307 258 PDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADC 306 (412)
T ss_pred CCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCE
Confidence 6799999999986654 45666655 2222235678888877654
No 107
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=67.35 E-value=20 Score=27.22 Aligned_cols=51 Identities=24% Similarity=0.337 Sum_probs=31.1
Q ss_pred HHHHHHHHhCCCceEEEecCCHHHHHH---HHHcCCc--eeEecccccHHHHHHHhh
Q psy11337 100 CFERIVTRFGRKCTYVVIGDGQDEEAA---AKQRNFP--FWRISSRSDLAALYHALD 151 (155)
Q Consensus 100 cFerI~~RFG~k~~yvvIGDG~eEe~a---Ak~~~~P--FwrI~~~~Dl~~L~~al~ 151 (155)
.++.+.++ ++++.++++|+|.++++. +++++.+ +.-....+|+..++...+
T Consensus 210 ~~~~l~~~-~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d 265 (353)
T cd03811 210 AFALLRKE-GPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAAD 265 (353)
T ss_pred HHHHhhhc-CCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCC
Confidence 34455555 679999999999776553 3445543 222334567776666543
No 108
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=67.15 E-value=17 Score=29.03 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=34.5
Q ss_pred hhHHHHHHHHhCCCceEEEecCCHHHHH-------HHHHcCCc-ee-EecccccHHHHHHHhhc
Q psy11337 98 DSCFERIVTRFGRKCTYVVIGDGQDEEA-------AAKQRNFP-FW-RISSRSDLAALYHALDN 152 (155)
Q Consensus 98 escFerI~~RFG~k~~yvvIGDG~eEe~-------aAk~~~~P-Fw-rI~~~~Dl~~L~~al~~ 152 (155)
..+|..++++ ++++.++++|+|.+++. .+++++.+ .+ -...++|+..++.+.+.
T Consensus 204 i~~~~~l~~~-~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~ 266 (355)
T cd03819 204 IEALARLKKD-DPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADI 266 (355)
T ss_pred HHHHHHHHhc-CCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCE
Confidence 3456666666 68899999999976432 33444543 22 23347788888877654
No 109
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=66.97 E-value=15 Score=28.56 Aligned_cols=53 Identities=26% Similarity=0.511 Sum_probs=32.3
Q ss_pred hhHHHHHHHHhCCCceEEEecCCHHHHHH---HHHcCCc----eeEecccccHHHHHHHhh
Q psy11337 98 DSCFERIVTRFGRKCTYVVIGDGQDEEAA---AKQRNFP----FWRISSRSDLAALYHALD 151 (155)
Q Consensus 98 escFerI~~RFG~k~~yvvIGDG~eEe~a---Ak~~~~P----FwrI~~~~Dl~~L~~al~ 151 (155)
..+++.+.++ ++++.++++|+|.+++.- +++++.+ |..--.+.++..++...+
T Consensus 221 ~~~~~~~~~~-~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad 280 (374)
T cd03817 221 IRAFARLLKE-EPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAAD 280 (374)
T ss_pred HHHHHHHHHh-CCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcC
Confidence 4566666666 789999999999766542 3334432 322223556667666544
No 110
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=66.53 E-value=49 Score=28.11 Aligned_cols=80 Identities=13% Similarity=0.131 Sum_probs=52.7
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCchHHHHHHHH------hhcccccccCccccccccChhhHHHHHHHHhC-CCceEEEe
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLIPALSKIML------FGLSGIFDVENIYSSTKIGKDSCFERIVTRFG-RKCTYVVI 117 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LL------ygL~~~fpieNIYSa~k~GKescFerI~~RFG-~k~~yvvI 117 (155)
..+.|..+..+ +..-.++|+..- ..|+-+| +++..+|.. +...+| .|-..+.+|.+++| ..-..|.|
T Consensus 36 ~~e~L~~L~~~-Gi~lai~S~n~~--~~a~~~l~~~~~~~~~~~~f~~--~~~~~~-pk~~~i~~~~~~l~i~~~~~vfi 109 (320)
T TIGR01686 36 LQEKIKTLKKQ-GFLLALASKNDE--DDAKKVFERRKDFILQAEDFDA--RSINWG-PKSESLRKIAKKLNLGTDSFLFI 109 (320)
T ss_pred HHHHHHHHHhC-CCEEEEEcCCCH--HHHHHHHHhCccccCcHHHeeE--EEEecC-chHHHHHHHHHHhCCCcCcEEEE
Confidence 34444444443 555566776643 3344344 344445543 233455 79999999999997 45689999
Q ss_pred cCCHHHHHHHHHc
Q psy11337 118 GDGQDEEAAAKQR 130 (155)
Q Consensus 118 GDG~eEe~aAk~~ 130 (155)
||..-|.++++..
T Consensus 110 dD~~~d~~~~~~~ 122 (320)
T TIGR01686 110 DDNPAERANVKIT 122 (320)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998885
No 111
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=66.10 E-value=18 Score=27.84 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=31.3
Q ss_pred hHHHHHHHHhCCCceEEEecCCHHHHHH---HH-HcCCc--eeEecccccHHHHHHHhh
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQDEEAA---AK-QRNFP--FWRISSRSDLAALYHALD 151 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~eEe~a---Ak-~~~~P--FwrI~~~~Dl~~L~~al~ 151 (155)
..|+.+.++ ++++.++++|+|.+++.. ++ +.+.+ +.-+...+|+..++.+.+
T Consensus 213 ~a~~~l~~~-~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad 270 (365)
T cd03807 213 RAAALLLKK-FPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALD 270 (365)
T ss_pred HHHHHHHHh-CCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCC
Confidence 445555555 678999999999765442 22 33333 222234677877777655
No 112
>PRK10444 UMP phosphatase; Provisional
Probab=64.77 E-value=16 Score=30.27 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=37.4
Q ss_pred cCh--hhHHHHHHHHhC-CCceEEEecCCHH-HHHHHHHcCCceeEecc
Q psy11337 95 IGK--DSCFERIVTRFG-RKCTYVVIGDGQD-EEAAAKQRNFPFWRISS 139 (155)
Q Consensus 95 ~GK--escFerI~~RFG-~k~~yvvIGDG~e-Ee~aAk~~~~PFwrI~~ 139 (155)
.|| ...|+.+++++| ++-.-++|||..+ .-++|+..+++++-|.+
T Consensus 172 ~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~ 220 (248)
T PRK10444 172 VGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLS 220 (248)
T ss_pred cCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECC
Confidence 465 578999999998 5567888999974 68899999999988865
No 113
>PRK07774 short chain dehydrogenase; Provisional
Probab=64.26 E-value=40 Score=26.04 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=27.6
Q ss_pred CccccccccChhhHHHHHHHHhC-CCceEEEecCC
Q psy11337 87 ENIYSSTKIGKDSCFERIVTRFG-RKCTYVVIGDG 120 (155)
Q Consensus 87 eNIYSa~k~GKescFerI~~RFG-~k~~yvvIGDG 120 (155)
-+.|+++|.+-++..+.+.++++ .+++.++|.-|
T Consensus 152 ~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg 186 (250)
T PRK07774 152 SNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPG 186 (250)
T ss_pred ccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecC
Confidence 46899999999999999998884 66777777543
No 114
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=64.25 E-value=37 Score=29.05 Aligned_cols=82 Identities=12% Similarity=0.051 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhhhcC----CCceEEEEeCCCch--HHHHHHHHhhcccccccCccccccccChhhHHHHHHHHhCCCceE
Q psy11337 41 WLSLAIKCLTLINQR----PSCTNVIVITTQLI--PALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFGRKCTY 114 (155)
Q Consensus 41 WLs~A~k~L~~i~~r----~~~vNVLVTt~qLV--paLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RFG~k~~y 114 (155)
.+..|.++++.+..+ ...+ ++||+..=. ...++.|.=.+|--++.++|+++. .+...+.++++++ .|
T Consensus 17 ~i~ga~eal~~L~~~~~~~g~~~-~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~-----~~~~~ll~~~~~~-v~ 89 (321)
T TIGR01456 17 PIAGASDALRRLNRNQGQLKIPY-IFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSH-----SPYKSLVNKYEKR-IL 89 (321)
T ss_pred ccHHHHHHHHHHhccccccCCCE-EEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhh-----HHHHHHHHHcCCc-eE
Confidence 345566666666665 3334 788866543 355676666677778888999986 3567777777553 45
Q ss_pred EEecCCHHHHHHHHHcC
Q psy11337 115 VVIGDGQDEEAAAKQRN 131 (155)
Q Consensus 115 vvIGDG~eEe~aAk~~~ 131 (155)
++-.+| ..+.++..+
T Consensus 90 viG~~~--~~~~l~~~G 104 (321)
T TIGR01456 90 AVGTGS--VRGVAEGYG 104 (321)
T ss_pred EEeChH--HHHHHHHcC
Confidence 544443 233344444
No 115
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=63.90 E-value=16 Score=29.19 Aligned_cols=53 Identities=15% Similarity=0.272 Sum_probs=44.5
Q ss_pred cccChhhHHHHHHHHhC-CCceEEEecCCHHHHHHHHHcCCceeEecccccHHH
Q psy11337 93 TKIGKDSCFERIVTRFG-RKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAA 145 (155)
Q Consensus 93 ~k~GKescFerI~~RFG-~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~ 145 (155)
..+.|.+-.+++.+++| ..-.-++|||+.---+..+..++++---+.++++.+
T Consensus 185 ~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~na~~~~k~ 238 (256)
T TIGR00099 185 KGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMGNADEELKA 238 (256)
T ss_pred CCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEecCchHHHHH
Confidence 35679999999999998 556889999999999999999999877666666544
No 116
>PTZ00225 60S ribosomal protein L10a; Provisional
Probab=63.88 E-value=9.3 Score=31.90 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=25.6
Q ss_pred CCCceEEEecCCHHHHHHHHHcCCceeEecccccHHHH
Q psy11337 109 GRKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAAL 146 (155)
Q Consensus 109 G~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L 146 (155)
|+...-|||+||. .++.||..|.+|..+. |+..|
T Consensus 57 gk~~kV~v~~~~~-~~~~Ak~aGad~v~~e---~l~~l 90 (214)
T PTZ00225 57 RPRMTVCLLCDLV-HEDIAKKEGVPTMNQE---ELKKL 90 (214)
T ss_pred CCCcEEEEECChH-HHHHHHHCCCCEECHH---HHHHH
Confidence 4678889999994 5666899999977655 55444
No 117
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=63.00 E-value=13 Score=29.53 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=42.2
Q ss_pred ccChhhHHHHHHHHhCC-CceEEEecCCHHHHHHHHHcCCceeEecccccHHHH
Q psy11337 94 KIGKDSCFERIVTRFGR-KCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAAL 146 (155)
Q Consensus 94 k~GKescFerI~~RFG~-k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L 146 (155)
.++|..-.+++.+|+|- .-.-++|||+.--.+..+..+.+|.-=+..+.+.+.
T Consensus 157 ~~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav~na~~~~k~~ 210 (236)
T TIGR02471 157 RASKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVVGNHDPELEGL 210 (236)
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEEcCCcHHHHHh
Confidence 46899999999999983 345588999998888888888888655556666665
No 118
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=62.73 E-value=1.2e+02 Score=27.36 Aligned_cols=115 Identities=18% Similarity=0.174 Sum_probs=64.0
Q ss_pred cCChhhHHHHHHHHHH----------hHHhhhHHHHHHHHHHhhhhcCC-CceEEEEeCCCchHHHHHHHHhhccccccc
Q psy11337 18 LLGPAKREEWLQLRAE----------IESVTDNWLSLAIKCLTLINQRP-SCTNVIVITTQLIPALSKIMLFGLSGIFDV 86 (155)
Q Consensus 18 Ll~~~~r~~w~~lr~e----------~e~~Td~WLs~A~k~L~~i~~r~-~~vNVLVTt~qLVpaLaK~LLygL~~~fpi 86 (155)
.+|...-+.|++--++ +|.+-+.+-..+...|+....+- .-.-++.+.+...-++++.| -.||--+..
T Consensus 276 ~~G~~~T~~~L~~Ia~~lg~~~~~~~~~~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l-~elGmevv~ 354 (456)
T TIGR01283 276 FYGIEDTSKALRDIADLFGDEELLKRTEELIAREEAKIRPALEPYRERLKGKKAAIYTGGVKSWSLVSAL-QDLGMEVVA 354 (456)
T ss_pred CCcHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHH-HHCCCEEEE
Confidence 4666666666643322 23333333333444444443331 22225567777888999975 578876554
Q ss_pred CccccccccC-hhhHHHHHHHHhCCCceE-------------------EEecCCHHHHHHHHHcCCceeEecc
Q psy11337 87 ENIYSSTKIG-KDSCFERIVTRFGRKCTY-------------------VVIGDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 87 eNIYSa~k~G-KescFerI~~RFG~k~~y-------------------vvIGDG~eEe~aAk~~~~PFwrI~~ 139 (155)
= .+..+ .+. .++|.++.+..... ++||.+ .|...|+++++||.+++.
T Consensus 355 ~----~t~~~~~~d-~~~l~~~~~~~~~v~~~~d~~e~~~~i~~~~pDl~ig~~-~~~~~a~k~giP~i~~~~ 421 (456)
T TIGR01283 355 T----GTQKGTEED-YARIRELMGEGTVMLDDANPRELLKLLLEYKADLLIAGG-KERYTALKLGIPFCDINH 421 (456)
T ss_pred E----eeecCCHHH-HHHHHHHcCCCeEEEeCCCHHHHHHHHhhcCCCEEEEcc-chHHHHHhcCCCEEEccc
Confidence 2 22222 222 66777776543322 345654 557788889999998853
No 119
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=62.71 E-value=19 Score=28.98 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=42.5
Q ss_pred cccChhhHHHHHHHHhC-CCceEEEecCCHHHHHHHHH-cCCceeEecccccHHHH
Q psy11337 93 TKIGKDSCFERIVTRFG-RKCTYVVIGDGQDEEAAAKQ-RNFPFWRISSRSDLAAL 146 (155)
Q Consensus 93 ~k~GKescFerI~~RFG-~k~~yvvIGDG~eEe~aAk~-~~~PFwrI~~~~Dl~~L 146 (155)
..++|.+..+++++++| ..-.-+++||+.--.+..+. ....+.--+.++++.+.
T Consensus 164 ~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~na~~~~k~~ 219 (249)
T TIGR01485 164 QGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSNAQEELLQW 219 (249)
T ss_pred CCCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECCCHHHHHHH
Confidence 35789999999999998 44567999999988888887 55667666667777653
No 120
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=62.62 E-value=19 Score=31.03 Aligned_cols=44 Identities=23% Similarity=0.493 Sum_probs=35.0
Q ss_pred ChhhHHHHHHHHh--CC-Cce-EEEecCCHHHHHHHHHcCCceeEecc
Q psy11337 96 GKDSCFERIVTRF--GR-KCT-YVVIGDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 96 GKescFerI~~RF--G~-k~~-yvvIGDG~eEe~aAk~~~~PFwrI~~ 139 (155)
|.-+||+-|..+. |. ++. =+||+|..+=..-|+++|+|+..++.
T Consensus 93 g~g~nl~~l~~~~~~g~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 93 KEDHCLGDLLWRWYSGELDAEIALVISNHEDLRSLVERFGIPFHYIPA 140 (280)
T ss_pred CCChhHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEcCC
Confidence 5669999999998 53 333 45678887777789999999999875
No 121
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=62.56 E-value=39 Score=30.24 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=41.6
Q ss_pred EEEeCCCchHHHHHHHHhhcccccccCccccccc-------------cChhhHHHHHHHHhCCCceEEEecCCHHHHHHH
Q psy11337 61 VIVITTQLIPALSKIMLFGLSGIFDVENIYSSTK-------------IGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAA 127 (155)
Q Consensus 61 VLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k-------------~GKescFerI~~RFG~k~~yvvIGDG~eEe~aA 127 (155)
.+++.+..+-++++.|. .||-.... +.+..+ ++-..-+| ++-. + .=++||+. .|...|
T Consensus 304 ai~~~~~~~~~l~~~L~-ElG~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~e---~~~~-~-~dllig~s-~~~~~A 374 (417)
T cd01966 304 AIALEPDLLAALSSFLA-EMGAEIVA--AVATTDSPALEKLPAEEVVVGDLEDLE---DLAA-E-ADLLVTNS-HGRQAA 374 (417)
T ss_pred EEEeCHHHHHHHHHHHH-HCCCEEEE--EEECCCCHHHHhCcccceEeCCHHHHH---Hhcc-c-CCEEEEcc-hhHHHH
Confidence 45555578999999998 88654433 221111 11122233 2222 2 34566766 566789
Q ss_pred HHcCCceeEecc
Q psy11337 128 KQRNFPFWRISS 139 (155)
Q Consensus 128 k~~~~PFwrI~~ 139 (155)
+++|.||.+++.
T Consensus 375 ~~~~ip~~~~g~ 386 (417)
T cd01966 375 ERLGIPLLRAGF 386 (417)
T ss_pred HhcCCCEEEecC
Confidence 999999999855
No 122
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=62.46 E-value=11 Score=29.61 Aligned_cols=40 Identities=25% Similarity=0.426 Sum_probs=34.2
Q ss_pred cccccccChhhHHHHHHHHhCCCceEEEecCCHHHHHHHH
Q psy11337 89 IYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAAK 128 (155)
Q Consensus 89 IYSa~k~GKescFerI~~RFG~k~~yvvIGDG~eEe~aAk 128 (155)
|.+.++.||-+-=+.+.+++|+++.|+.-|+-.|+|-.++
T Consensus 6 i~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~r 45 (170)
T PRK05800 6 VTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAAR 45 (170)
T ss_pred EECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHH
Confidence 5678899999999999999999999999998888875554
No 123
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=62.14 E-value=30 Score=23.10 Aligned_cols=55 Identities=15% Similarity=0.038 Sum_probs=36.8
Q ss_pred cChhhHHHHHHHHhCCCceEEEecCCHHHHHHHHHcCCceeEecccc-cHHHHHHHh
Q psy11337 95 IGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAAKQRNFPFWRISSRS-DLAALYHAL 150 (155)
Q Consensus 95 ~GKescFerI~~RFG~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~-Dl~~L~~al 150 (155)
.--.+..++|+++. +++..+++++-.++....+.+...+...=..| +...|.+|+
T Consensus 56 ~~~~~~~~~i~~~~-~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i 111 (112)
T PF00072_consen 56 GDGLELLEQIRQIN-PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAI 111 (112)
T ss_dssp SBHHHHHHHHHHHT-TTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHH
T ss_pred cccccccccccccc-ccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhh
Confidence 34567889998887 99999999977776655555555554443433 566666665
No 124
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=62.06 E-value=24 Score=27.28 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=32.5
Q ss_pred hHHHHHHHHhCCCceEEEecCCHHHHHHHH---HcCCceeEecc---cccHHHHHHHhhc
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQDEEAAAK---QRNFPFWRISS---RSDLAALYHALDN 152 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~eEe~aAk---~~~~PFwrI~~---~~Dl~~L~~al~~ 152 (155)
..++++.++ +++.++++|+|.+.+...+ ..+.|-+++-. +.++..++.+.+.
T Consensus 240 ~~~~~l~~~--~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di 297 (394)
T cd03794 240 EAAALLKDR--PDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADV 297 (394)
T ss_pred HHHHHHhhc--CCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe
Confidence 444555444 5899999999987655433 45556555443 3467777766553
No 125
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=61.66 E-value=46 Score=29.62 Aligned_cols=75 Identities=8% Similarity=0.015 Sum_probs=41.4
Q ss_pred EEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHH----------------HHhC-CCceEEEecCCHHHH
Q psy11337 62 IVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIV----------------TRFG-RKCTYVVIGDGQDEE 124 (155)
Q Consensus 62 LVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~----------------~RFG-~k~~yvvIGDG~eEe 124 (155)
+..-..++-++++.|. .+|--+..=-...-....++.-.+++. ++.. .|+-. +||.. .+.
T Consensus 285 v~g~~~~~~~la~~L~-elGmevv~~~t~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~pDl-~Ig~s-~~~ 361 (416)
T cd01980 285 VSGYEGNELLVARLLI-ESGAEVPYVSTSIPKTSLSAPDYEWLSALGVEVRYRKSLEDDIAAVEEYRPDL-AIGTT-PLV 361 (416)
T ss_pred EECCCchhHHHHHHHH-HcCCEEEEEecCCCChhhhHHHHHHHHhcCCccccCCCHHHHHHHHhhcCCCE-EEeCC-hhh
Confidence 5665667777999986 777653321110000111333333333 2221 23333 44554 477
Q ss_pred HHHHHcCCceeEecc
Q psy11337 125 AAAKQRNFPFWRISS 139 (155)
Q Consensus 125 ~aAk~~~~PFwrI~~ 139 (155)
..|+++++|+.|+..
T Consensus 362 ~~a~~~giP~~r~~~ 376 (416)
T cd01980 362 QYAKEKGIPALYYTN 376 (416)
T ss_pred HHHHHhCCCEEEecC
Confidence 899999999999875
No 126
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=61.53 E-value=19 Score=27.22 Aligned_cols=54 Identities=11% Similarity=0.232 Sum_probs=43.0
Q ss_pred ccccChhhHHHHHHHHhC-CCceEEEecCCHHHHHHHHHcCCceeEecccccHHH
Q psy11337 92 STKIGKDSCFERIVTRFG-RKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAA 145 (155)
Q Consensus 92 a~k~GKescFerI~~RFG-~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~ 145 (155)
+..+.|.+-.+++.+.+| +....++|||+.---+--+..+.+|.-=++++.+.+
T Consensus 182 ~~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~na~~~~k~ 236 (254)
T PF08282_consen 182 PKGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMGNATPELKK 236 (254)
T ss_dssp ETTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHH
T ss_pred eCCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEcCCCHHHHH
Confidence 455789999999999998 668999999998888888888888776666665543
No 127
>PRK08238 hypothetical protein; Validated
Probab=61.10 E-value=1e+02 Score=28.57 Aligned_cols=103 Identities=13% Similarity=0.196 Sum_probs=51.8
Q ss_pred HHHhHHhhhHHHHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccc----cChhhHHHHHHH
Q psy11337 31 RAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTK----IGKDSCFERIVT 106 (155)
Q Consensus 31 r~e~e~~Td~WLs~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k----~GKescFerI~~ 106 (155)
+..+|.-+--+...+.+.++...+ .+.--+++|++.- .+++-++=.+|- | +.|.++-. .|+.. -+++++
T Consensus 63 ~~~~d~~~lp~~pga~e~L~~lk~-~G~~v~LaTas~~--~~a~~i~~~lGl-F--d~Vigsd~~~~~kg~~K-~~~l~~ 135 (479)
T PRK08238 63 RVDLDVATLPYNEEVLDYLRAERA-AGRKLVLATASDE--RLAQAVAAHLGL-F--DGVFASDGTTNLKGAAK-AAALVE 135 (479)
T ss_pred hcCCChhhCCCChhHHHHHHHHHH-CCCEEEEEeCCCH--HHHHHHHHHcCC-C--CEEEeCCCccccCCchH-HHHHHH
Confidence 444444333344445555555433 3445567777643 223322222221 2 33433321 12222 357889
Q ss_pred HhCCC-ceEEEecCCHHHHHHHHHcCCceeEecccccH
Q psy11337 107 RFGRK-CTYVVIGDGQDEEAAAKQRNFPFWRISSRSDL 143 (155)
Q Consensus 107 RFG~k-~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl 143 (155)
++|.+ + +.+||....-.+++..+-|+ -|+.++.+
T Consensus 136 ~l~~~~~--~yvGDS~~Dlp~~~~A~~av-~Vn~~~~l 170 (479)
T PRK08238 136 AFGERGF--DYAGNSAADLPVWAAARRAI-VVGASPGV 170 (479)
T ss_pred HhCccCe--eEecCCHHHHHHHHhCCCeE-EECCCHHH
Confidence 99865 5 45699887777777666554 34444443
No 128
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=60.84 E-value=34 Score=30.36 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=35.9
Q ss_pred hHHHHHHHHhCCCceEEEecCCHH------H-HHHHHHcCCc-eeEecccccHHHHHHHhhc
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQD------E-EAAAKQRNFP-FWRISSRSDLAALYHALDN 152 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~e------E-e~aAk~~~~P-FwrI~~~~Dl~~L~~al~~ 152 (155)
.+|+.++++ ++++++++||+|.+ | ++.+++++.+ -+++-.+.|+..++.+.+.
T Consensus 313 ~a~~~l~~~-~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G~~~v~~~l~~aDv 373 (475)
T cd03813 313 RAAAIVRKK-IPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTGFQNVKEYLPKLDV 373 (475)
T ss_pred HHHHHHHHh-CCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcCCccHHHHHHhCCE
Confidence 456666666 68999999999932 2 2346667763 4444447888888887664
No 129
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=59.95 E-value=19 Score=21.60 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=26.8
Q ss_pred hHHHHHHHHhC--------CCceEEEecCCHHHH--HHHHHcCCceeEe
Q psy11337 99 SCFERIVTRFG--------RKCTYVVIGDGQDEE--AAAKQRNFPFWRI 137 (155)
Q Consensus 99 scFerI~~RFG--------~k~~yvvIGDG~eEe--~aAk~~~~PFwrI 137 (155)
+-++++.+.+| +.+|++|+++..... ..|...+.|+++.
T Consensus 16 ~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~ 64 (72)
T cd00027 16 DELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTP 64 (72)
T ss_pred HHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHHcCCeEecH
Confidence 34455555554 379999999886654 5677788887754
No 130
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=59.71 E-value=79 Score=29.55 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=46.0
Q ss_pred EEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHHh-----CCCce-------------------EEE
Q psy11337 61 VIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRF-----GRKCT-------------------YVV 116 (155)
Q Consensus 61 VLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RF-----G~k~~-------------------yvv 116 (155)
.|..-..++-+++++|+ .||-.. +.-.+..|...+-+++++.+ |.++. =++
T Consensus 367 aI~gdpd~~~~l~~fL~-ElGmep----v~v~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~~~Dl~~l~~~l~~~~~Dll 441 (515)
T TIGR01286 367 AIYGDPDFVMGLVRFVL-ELGCEP----VHILCTNGTKRWKAEMKALLAASPYGQNATVWIGKDLWHLRSLVFTEPVDFL 441 (515)
T ss_pred EEECCHHHHHHHHHHHH-HCCCEE----EEEEeCCCCHHHHHHHHHHHhcCCCCCccEEEeCCCHHHHHHHHhhcCCCEE
Confidence 66777889999999997 887543 22223233334445554433 32221 134
Q ss_pred ecCCHHHHHHHHHcCCceeEecc
Q psy11337 117 IGDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 117 IGDG~eEe~aAk~~~~PFwrI~~ 139 (155)
||+. -+...|++++.||.||+.
T Consensus 442 iG~s-~~k~~a~~~giPlir~gf 463 (515)
T TIGR01286 442 IGNS-YGKYIQRDTLVPLIRIGF 463 (515)
T ss_pred EECc-hHHHHHHHcCCCEEEecC
Confidence 5666 457889999999999975
No 131
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=59.58 E-value=14 Score=29.07 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=31.8
Q ss_pred hhHHHHHHHHhCCCceEEEecCCHHHHHH--------HHHcCCc----eeEe-cccccHHHHHHHhh
Q psy11337 98 DSCFERIVTRFGRKCTYVVIGDGQDEEAA--------AKQRNFP----FWRI-SSRSDLAALYHALD 151 (155)
Q Consensus 98 escFerI~~RFG~k~~yvvIGDG~eEe~a--------Ak~~~~P----FwrI-~~~~Dl~~L~~al~ 151 (155)
.++|+.+.++ +++++++++|+|.++... +++++.+ |+.- -...|+..++.+.+
T Consensus 204 l~a~~~~~~~-~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad 269 (366)
T cd03822 204 LEALPLLVAK-HPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAAD 269 (366)
T ss_pred HHHHHHHHhh-CCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcC
Confidence 3566677666 689999999998765432 3455543 2211 22456666666544
No 132
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=59.32 E-value=33 Score=26.15 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=31.2
Q ss_pred HHHHHHHHhCCCceEEEecCCHHHHHH---HHHcCCce-eEe-cccccHHHHHHHhhc
Q psy11337 100 CFERIVTRFGRKCTYVVIGDGQDEEAA---AKQRNFPF-WRI-SSRSDLAALYHALDN 152 (155)
Q Consensus 100 cFerI~~RFG~k~~yvvIGDG~eEe~a---Ak~~~~PF-wrI-~~~~Dl~~L~~al~~ 152 (155)
+|+.+.+ .+++++++++|+|.+++.- +++.+.+- ..+ ....|+..++.+.+.
T Consensus 199 ~~~~l~~-~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~ 255 (348)
T cd03820 199 AWAKIAK-KHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASI 255 (348)
T ss_pred HHHHHHh-cCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCE
Confidence 3444433 2678999999999776543 34555432 222 224778777776543
No 133
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=58.63 E-value=18 Score=29.21 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=29.3
Q ss_pred HHHHHHhCCCceEEEecCCHHHHH---HHHHcCCce-eEec---ccccHHHHHHHhhc
Q psy11337 102 ERIVTRFGRKCTYVVIGDGQDEEA---AAKQRNFPF-WRIS---SRSDLAALYHALDN 152 (155)
Q Consensus 102 erI~~RFG~k~~yvvIGDG~eEe~---aAk~~~~PF-wrI~---~~~Dl~~L~~al~~ 152 (155)
..+.++ ++++.++++|+|.++++ .++.++.+- +++- .+.++..++.+.+.
T Consensus 211 ~~l~~~-~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~ 267 (367)
T cd05844 211 ARLARR-VPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARI 267 (367)
T ss_pred HHHHHh-CCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCE
Confidence 334444 67899999999975543 345544431 2222 23557777766554
No 134
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=57.98 E-value=16 Score=28.56 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=30.0
Q ss_pred hHHHHHHHHhCCCceEEEecCCHHHHHHH-HHcCCceeEecccccHHHHHHHhhc
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQDEEAAA-KQRNFPFWRISSRSDLAALYHALDN 152 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~eEe~aA-k~~~~PFwrI~~~~Dl~~L~~al~~ 152 (155)
.+|+.+.++ +++.++++|+|.+++... ..-++-|..--.+.++..++.+.+.
T Consensus 217 ~~~~~l~~~--~~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~ 269 (364)
T cd03814 217 DADLPLRRR--PPVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAYASADV 269 (364)
T ss_pred HHHHHhhhc--CCceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHHHhCCE
Confidence 344444444 579999999997776543 1223333333345567777766553
No 135
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=57.89 E-value=40 Score=24.74 Aligned_cols=48 Identities=27% Similarity=0.475 Sum_probs=33.5
Q ss_pred HHHHh-CCCceEEEec------------CCH--H----------HHHHHHHcCCceeEec--ccccHHHHHHHhh
Q psy11337 104 IVTRF-GRKCTYVVIG------------DGQ--D----------EEAAAKQRNFPFWRIS--SRSDLAALYHALD 151 (155)
Q Consensus 104 I~~RF-G~k~~yvvIG------------DG~--e----------Ee~aAk~~~~PFwrI~--~~~Dl~~L~~al~ 151 (155)
...++ +..|.|||+- ||. + =+++-++.|+|+.|++ ..++...+..+++
T Consensus 49 ~~~~~~~~~vDFvv~d~~~~~p~~vIEld~~~h~~~~~~~rD~~k~~~l~~agiplir~~~~~~~~~~~l~~~l~ 123 (126)
T PF10881_consen 49 AFNRINQKHVDFVVCDKRDGRPVAVIELDGSSHDQEKRQERDEFKDRVLKKAGIPLIRISPKDSYSVEELRRDLR 123 (126)
T ss_pred HHHHhcCCCccEEEEECCCCcEEEEEEecCccccchhhHHHHHHHHHHHHHCCCCEEEEeCCCCCCHHHHHHHHH
Confidence 34444 6779998887 232 1 1235688999999994 4778888888775
No 136
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=57.70 E-value=1.1e+02 Score=27.23 Aligned_cols=78 Identities=12% Similarity=0.086 Sum_probs=42.8
Q ss_pred EEEeCCCchHHHHHHHH--hhccccccc-Cccccc----------------cccChhhHHHHHHHHhCCC----ceEEEe
Q psy11337 61 VIVITTQLIPALSKIML--FGLSGIFDV-ENIYSS----------------TKIGKDSCFERIVTRFGRK----CTYVVI 117 (155)
Q Consensus 61 VLVTt~qLVpaLaK~LL--ygL~~~fpi-eNIYSa----------------~k~GKescFerI~~RFG~k----~~yvvI 117 (155)
.++.-..++.++++.|. .|.....-+ .+-++. .++--..=++.|.++.-+. -.=++|
T Consensus 297 ai~~~~~~~~~l~~~L~~elGm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~D~~~~~~~i~~~~~~~~~dlii 376 (427)
T cd01971 297 AVIADSTYALGLARFLVNELGWVPAKQVITDNPPEKYRSAIENEFEAEGVSAEVVFSEDGYAIGQSLRQSDFKYKPPIIF 376 (427)
T ss_pred EEECChHHHHHHHHHHHHhcCCceEEEEecCCCCHHHHHHHHHHHHhcCCCCcEEEecCHHHHHHHHHhCCCCCCCCEEE
Confidence 56677789999999997 555443321 110000 0000001122444443111 123677
Q ss_pred cCCHHHHHHHHHcCCceeEecc
Q psy11337 118 GDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 118 GDG~eEe~aAk~~~~PFwrI~~ 139 (155)
|++ -|...|++++.||.+++.
T Consensus 377 g~s-~~~~~a~~~~ip~i~~~~ 397 (427)
T cd01971 377 GSS-WERDLAKELGGKILEVSF 397 (427)
T ss_pred ech-HHHHHHHHcCCCeEEEeC
Confidence 877 566788899999999994
No 137
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=57.22 E-value=24 Score=28.11 Aligned_cols=50 Identities=12% Similarity=0.077 Sum_probs=39.6
Q ss_pred ccChhhHHHHHHHHhC-CCceEEEecCCHHHHHHHHHcCCceeEecccccH
Q psy11337 94 KIGKDSCFERIVTRFG-RKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDL 143 (155)
Q Consensus 94 k~GKescFerI~~RFG-~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl 143 (155)
.+.|.+..+++.+++| ..-.-++|||+.---+.++..++++--=+.++++
T Consensus 197 ~~~K~~~l~~l~~~~gi~~~e~i~~GD~~NDi~m~~~ag~~vamgna~~~l 247 (272)
T PRK10530 197 GNSKGKRLTQWVEAQGWSMKNVVAFGDNFNDISMLEAAGLGVAMGNADDAV 247 (272)
T ss_pred CCChHHHHHHHHHHcCCCHHHeEEeCCChhhHHHHHhcCceEEecCchHHH
Confidence 3569999999999998 4467899999999999999999887433444444
No 138
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=57.19 E-value=23 Score=30.70 Aligned_cols=44 Identities=23% Similarity=0.449 Sum_probs=35.4
Q ss_pred ChhhHHHHHHHHh--CC-C-ceEEEecCCHHHHHHHHHcCCceeEecc
Q psy11337 96 GKDSCFERIVTRF--GR-K-CTYVVIGDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 96 GKescFerI~~RF--G~-k-~~yvvIGDG~eEe~aAk~~~~PFwrI~~ 139 (155)
|.-+||+-|..+. |. + --=+||+|..+=.+-|+++|+|+..++.
T Consensus 102 g~g~nl~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~ 149 (289)
T PRK13010 102 KFDHCLNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHDIPFHHLPV 149 (289)
T ss_pred CCCccHHHHHHHHHCCCCCcEEEEEEECChhHHHHHHHcCCCEEEeCC
Confidence 5569999999998 53 2 3456788888888999999999998764
No 139
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=55.95 E-value=29 Score=26.54 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=31.3
Q ss_pred CCCceEEEecCCHHHHHHHHHcCCceeEecccccHHHHHHH
Q psy11337 109 GRKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAALYHA 149 (155)
Q Consensus 109 G~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L~~a 149 (155)
-+++.+++||. ...++++++++.-..+...++...|-.+
T Consensus 200 ~~~~~~~aig~--~t~~~l~~~g~~~~~~~~~~~~~~l~~~ 238 (239)
T cd06578 200 LKNVKIAAIGP--RTAEALRELGLKVVIVAESPTLEALLEA 238 (239)
T ss_pred hcCCeEEEECH--HHHHHHHHcCCCceeeecCCChHHHHhh
Confidence 46799999965 5777888899988888888887777655
No 140
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.91 E-value=93 Score=23.99 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=41.3
Q ss_pred CccccccccChhhHHHHHHHHhCC-CceEEEecCCH-----------HHHHHHHHcCCceeEecccccHHHHH
Q psy11337 87 ENIYSSTKIGKDSCFERIVTRFGR-KCTYVVIGDGQ-----------DEEAAAKQRNFPFWRISSRSDLAALY 147 (155)
Q Consensus 87 eNIYSa~k~GKescFerI~~RFG~-k~~yvvIGDG~-----------eEe~aAk~~~~PFwrI~~~~Dl~~L~ 147 (155)
.+.|+++|.+-++..+.+...+++ +++..+|.-|. ++....-+...|+++...-.|+....
T Consensus 156 ~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~ 228 (253)
T PRK08642 156 YHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAATPDEVFDLIAATTPLRKVTTPQEFADAV 228 (253)
T ss_pred ccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccCCHHHHHHHHhcCCcCCCCCHHHHHHHH
Confidence 468999999999999999888865 47666664331 22222234467888876666665543
No 141
>PLN02501 digalactosyldiacylglycerol synthase
Probab=55.17 E-value=30 Score=34.67 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=32.1
Q ss_pred HHHHHHHHhCCCceEEEecCCHHHHH---HHHHcCCceeEecccccHHHHHHHhhc
Q psy11337 100 CFERIVTRFGRKCTYVVIGDGQDEEA---AAKQRNFPFWRISSRSDLAALYHALDN 152 (155)
Q Consensus 100 cFerI~~RFG~k~~yvvIGDG~eEe~---aAk~~~~PFwrI~~~~Dl~~L~~al~~ 152 (155)
.|..+..+ .+++++++||||+++++ .+++++....-....+|...++++.+.
T Consensus 567 Ala~L~~~-~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDV 621 (794)
T PLN02501 567 LLAKHKNE-LDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKV 621 (794)
T ss_pred HHHHHHhh-CCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCE
Confidence 34444444 35799999999988654 355667543223445566667777653
No 142
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=55.13 E-value=26 Score=30.25 Aligned_cols=44 Identities=25% Similarity=0.462 Sum_probs=33.3
Q ss_pred ChhhHHHHHHHHh--CC-CceEE-EecCCHHHHHHHHHcCCceeEecc
Q psy11337 96 GKDSCFERIVTRF--GR-KCTYV-VIGDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 96 GKescFerI~~RF--G~-k~~yv-vIGDG~eEe~aAk~~~~PFwrI~~ 139 (155)
|.-+||+.|..++ |. ++.-+ ||+|..|=...|+++|+|+..++.
T Consensus 98 g~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~ 145 (286)
T PRK13011 98 KFDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFPI 145 (286)
T ss_pred CCcccHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhCCCEEEeCC
Confidence 4569999999988 43 34444 467777777789999999998753
No 143
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=54.42 E-value=29 Score=29.16 Aligned_cols=40 Identities=20% Similarity=0.023 Sum_probs=35.0
Q ss_pred CCceEEEecCCHHHHHHHHHcCCceeEecccccHHHHHHHhh
Q psy11337 110 RKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAALYHALD 151 (155)
Q Consensus 110 ~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L~~al~ 151 (155)
.++.++|||. -..++|++++|.-..|...++-.+|-.|+.
T Consensus 218 ~~~~~v~is~--rtA~~a~~~G~~~v~vA~~~~~~~l~~a~~ 257 (266)
T PRK08811 218 QQRPVVASSD--RLLDAAHAAGFIHVMRAAGPLPAQLAAAAA 257 (266)
T ss_pred hCCCEEEeCH--HHHHHHHHcCCCceeeCCCCCHHHHHHHHH
Confidence 5788999965 577889999999999999999999998875
No 144
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=54.41 E-value=15 Score=23.45 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=23.3
Q ss_pred CCCceEEEecC---CHHHHHHHHHcCCceeEec
Q psy11337 109 GRKCTYVVIGD---GQDEEAAAKQRNFPFWRIS 138 (155)
Q Consensus 109 G~k~~yvvIGD---G~eEe~aAk~~~~PFwrI~ 138 (155)
.++++++|+++ ...+..+|...+.|+++.+
T Consensus 40 ~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~ 72 (78)
T PF00533_consen 40 SKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPD 72 (78)
T ss_dssp STTSSEEEESSSHCCCHHHHHHHHTTSEEEETH
T ss_pred ccCcEEEEeCCCCCccHHHHHHHHCCCeEecHH
Confidence 46689999995 4566778999999988643
No 145
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=54.36 E-value=49 Score=26.91 Aligned_cols=31 Identities=29% Similarity=0.564 Sum_probs=24.7
Q ss_pred cccccccChhhHHHHHHHHhCC----CceEEEecCCH
Q psy11337 89 IYSSTKIGKDSCFERIVTRFGR----KCTYVVIGDGQ 121 (155)
Q Consensus 89 IYSa~k~GKescFerI~~RFG~----k~~yvvIGDG~ 121 (155)
-.+-|.+| +||+...+.+++ +.+.++||||.
T Consensus 126 ~~GgTdi~--~aL~~~~~~~~~~~~~~t~vvIiSDg~ 160 (222)
T PF05762_consen 126 FGGGTDIG--QALREFLRQYARPDLRRTTVVIISDGW 160 (222)
T ss_pred CCCccHHH--HHHHHHHHHhhcccccCcEEEEEeccc
Confidence 45666676 899999999963 57999999994
No 146
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=54.20 E-value=1.2e+02 Score=28.25 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=44.0
Q ss_pred EEEeCCCchHHHHHHHHhhcccccccCcccccccc--------------C-hhhHHHHHHHHhCCCceEEEecCCHHHHH
Q psy11337 61 VIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKI--------------G-KDSCFERIVTRFGRKCTYVVIGDGQDEEA 125 (155)
Q Consensus 61 VLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~--------------G-KescFerI~~RFG~k~~yvvIGDG~eEe~ 125 (155)
.++.....+-+++|.|.-.||--.-+--.|+...- . .++ +..|.++-.+.--=++||+. -|..
T Consensus 309 ~I~gd~~~a~~l~~~L~~ELGm~vv~~g~~~~~~~~~~~~~~~~~~~~~~i~~D-~~ei~~~I~~~~pdliiGs~-~er~ 386 (513)
T CHL00076 309 VVFGDATHAASMTKILAREMGIRVSCAGTYCKHDAEWFKEQVQGFCDEILITDD-HTEVGDMIARVEPSAIFGTQ-MERH 386 (513)
T ss_pred EEEcCchHHHHHHHHHHHhCCCEEEEecCcccchhHHHHHHHHHhccCcEEecC-HHHHHHHHHhcCCCEEEECc-hhhH
Confidence 56667789999999998666654311111221100 0 011 23333332222233677877 6777
Q ss_pred HHHHcCCceeEec
Q psy11337 126 AAKQRNFPFWRIS 138 (155)
Q Consensus 126 aAk~~~~PFwrI~ 138 (155)
.|+++++|+.+|+
T Consensus 387 ia~~lgiP~~~is 399 (513)
T CHL00076 387 IGKRLDIPCGVIS 399 (513)
T ss_pred HHHHhCCCEEEee
Confidence 7899999999988
No 147
>PRK05717 oxidoreductase; Validated
Probab=54.13 E-value=68 Score=25.16 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=30.4
Q ss_pred ccCccccccccChhhHHHHHHHHhCCCceEEEecCC
Q psy11337 85 DVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDG 120 (155)
Q Consensus 85 pieNIYSa~k~GKescFerI~~RFG~k~~yvvIGDG 120 (155)
|--+.|+++|.+=+.-.+.+..+++++++..+|.-|
T Consensus 152 ~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg 187 (255)
T PRK05717 152 PDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPG 187 (255)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 345789999999998999999999888888888765
No 148
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=53.82 E-value=25 Score=30.60 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=32.5
Q ss_pred HHHHHHHHhCCCceEEEecCCHHHHH---HHHHcCCc-eeEe---cccccHHHHHHHhhc
Q psy11337 100 CFERIVTRFGRKCTYVVIGDGQDEEA---AAKQRNFP-FWRI---SSRSDLAALYHALDN 152 (155)
Q Consensus 100 cFerI~~RFG~k~~yvvIGDG~eEe~---aAk~~~~P-FwrI---~~~~Dl~~L~~al~~ 152 (155)
.|..++++ |+++++++||||.++++ .+++++.. -+.+ -++.++..++.+.+.
T Consensus 243 a~~~l~~~-~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv 301 (406)
T PRK15427 243 ACRQLKEQ-GVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADV 301 (406)
T ss_pred HHHHHHhh-CCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCE
Confidence 34444433 67899999999976654 45566653 2222 245678888777653
No 149
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=53.49 E-value=33 Score=26.22 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=39.0
Q ss_pred ccCccccccccChhhHHHHHHH---HhCCCceEEEecCCHHHHHHHHHcCCceeEecccccHHHHHHHhh
Q psy11337 85 DVENIYSSTKIGKDSCFERIVT---RFGRKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAALYHALD 151 (155)
Q Consensus 85 pieNIYSa~k~GKescFerI~~---RFG~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L~~al~ 151 (155)
+++.|.=.+..|=+.-|+.+.. +.-.++.+++||.. ..+++++.+++...+...++...|...+.
T Consensus 49 ~~~~iiftS~~av~~~~~~~~~~~~~~~~~~~~~avG~~--Ta~~l~~~g~~~~~~~~~~~~~~L~~~i~ 116 (239)
T cd06578 49 EYDWLIFTSPNAVEAFFEALEELGLRALAGLKIAAVGPK--TAEALREAGLTADFVPEEGDSEGLLELLE 116 (239)
T ss_pred CCCEEEEECHHHHHHHHHHHHhhCCccccCCEEEEECHH--HHHHHHHcCCCceeCCCccCHHHHHHHHH
Confidence 3344444444444444444443 24467778888664 77788888888877756666666665554
No 150
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=53.37 E-value=1.7e+02 Score=26.36 Aligned_cols=117 Identities=15% Similarity=0.046 Sum_probs=61.7
Q ss_pred CChhhHHHHHHHHHHh-------HHhhhHHHHHHHHHHhhhhcCCCceEEEEe-CCCchHHHHHHHHhhcccccccCccc
Q psy11337 19 LGPAKREEWLQLRAEI-------ESVTDNWLSLAIKCLTLINQRPSCTNVIVI-TTQLIPALSKIMLFGLSGIFDVENIY 90 (155)
Q Consensus 19 l~~~~r~~w~~lr~e~-------e~~Td~WLs~A~k~L~~i~~r~~~vNVLVT-t~qLVpaLaK~LLygL~~~fpieNIY 90 (155)
+|...-+.|++--+++ |.+-+..-..+++.|+..+.+-...-|.|. .+...-++++.|+-.||--+..=+.+
T Consensus 271 ~G~~~t~~~l~~la~~~gi~~~~e~~i~~~~~~~~~~l~~~~~~l~gkrvai~~~~~~~~~~~~~ll~elGm~v~~~~~~ 350 (443)
T TIGR01862 271 FGFTYTAESLRAIAAFFGIEKRAEEVIAEEKAKWKPELDYYKERLQGKRVCLYIGGSRLWHWIGSAEEDLGMEVVAVGYE 350 (443)
T ss_pred CCHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCchhHHHHHHHHHHHCCCEEEEeccc
Confidence 4555555665443322 222233333444445544444444556554 45666699997777777554332222
Q ss_pred cc----------------cccChhhHHHH--HHHHhCCCceEEEecCCHHHHHHHHHcCCceeEecc
Q psy11337 91 SS----------------TKIGKDSCFER--IVTRFGRKCTYVVIGDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 91 Sa----------------~k~GKescFer--I~~RFG~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~ 139 (155)
.. -.+|..+-+|. ...+.++. .+||.. -|..+|+++++||.++..
T Consensus 351 ~~~~~~~~~~l~~l~~~~~~v~~~~~~e~~~~i~~~~pd---llig~s-~~~~~A~~lgip~~~~~~ 413 (443)
T TIGR01862 351 FAHEDDYEKTMKRMGEGTLLIDDPNELEFEEILEKLKPD---IIFSGI-KEKFVAQKLGVPYRQMHS 413 (443)
T ss_pred cccHHHHHHHHHhCCCceEEecCCCHHHHHHHHHhcCCC---EEEEcC-cchhhhhhcCCCeEecCC
Confidence 10 01222222332 23444444 566776 447788899999999854
No 151
>PRK09134 short chain dehydrogenase; Provisional
Probab=53.27 E-value=54 Score=25.77 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=28.7
Q ss_pred ccCccccccccChhhHHHHHHHHhCCCceEEEecCC
Q psy11337 85 DVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDG 120 (155)
Q Consensus 85 pieNIYSa~k~GKescFerI~~RFG~k~~yvvIGDG 120 (155)
|.-..|+++|.+=+.-.+.+...++++++.++|.=|
T Consensus 154 p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG 189 (258)
T PRK09134 154 PDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPG 189 (258)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecc
Confidence 334579999999888888888888877888888766
No 152
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=53.12 E-value=43 Score=23.85 Aligned_cols=49 Identities=22% Similarity=0.435 Sum_probs=31.4
Q ss_pred HHHHHHHh-CCCceEEEecCCHHHHH--HHHHcCCceeEecccccHHHHHHHhh
Q psy11337 101 FERIVTRF-GRKCTYVVIGDGQDEEA--AAKQRNFPFWRISSRSDLAALYHALD 151 (155)
Q Consensus 101 FerI~~RF-G~k~~yvvIGDG~eEe~--aAk~~~~PFwrI~~~~Dl~~L~~al~ 151 (155)
+.++.++| .+++..++|+...+++. -++++++|| ++-+.++ ..++.++.
T Consensus 46 l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~-p~~~D~~-~~~~~~~g 97 (149)
T cd02970 46 LSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPF-PVYADPD-RKLYRALG 97 (149)
T ss_pred HHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCC-eEEECCc-hhHHHHcC
Confidence 56677888 46788888887655544 366777775 5555565 34555544
No 153
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=53.07 E-value=26 Score=30.78 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=35.0
Q ss_pred ChhhHHHHHHHHh--CCCceEEEecCCHHHHHH---HHHcCCceeEecccccHHHHHHHhhc
Q psy11337 96 GKDSCFERIVTRF--GRKCTYVVIGDGQDEEAA---AKQRNFPFWRISSRSDLAALYHALDN 152 (155)
Q Consensus 96 GKescFerI~~RF--G~k~~yvvIGDG~eEe~a---Ak~~~~PFwrI~~~~Dl~~L~~al~~ 152 (155)
|++.-.+-+.+-+ .++..+++||||.++++. ++..++-|.---.+.|+..++.+.|.
T Consensus 273 ~~~K~~~~li~a~~~~~~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv 334 (465)
T PLN02871 273 GAEKNLDFLKRVMERLPGARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGDV 334 (465)
T ss_pred chhhhHHHHHHHHHhCCCcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCE
Confidence 4444444444433 368999999999876543 22344444433445788888887764
No 154
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=53.05 E-value=1.1e+02 Score=28.20 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=41.6
Q ss_pred EEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHHhCCC-----------------ceEEEecCCHHH
Q psy11337 61 VIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFGRK-----------------CTYVVIGDGQDE 123 (155)
Q Consensus 61 VLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RFG~k-----------------~~yvvIGDG~eE 123 (155)
.++.-....-++++.|.-.||--+..--.|+... ++. ++...+.++.+ --=++||+. -|
T Consensus 297 ~I~gd~~~a~~l~~~L~~ElGm~vv~~gt~~~~~--~~~-~~~~~~~~~~~~~i~~D~~el~~~i~~~~PdliiG~~-~e 372 (519)
T PRK02910 297 FVFGDATHAVAAARILSDELGFEVVGAGTYLRED--ARW-VRAAAKEYGDEALITDDYLEVEDAIAEAAPELVLGTQ-ME 372 (519)
T ss_pred EEEcCcHHHHHHHHHHHHhcCCeEEEEecCCcch--hHH-HHHHHHhcCCCeEEecCHHHHHHHHHhcCCCEEEEcc-hH
Confidence 4455567889999999855554332111122211 111 22222223222 122455666 67
Q ss_pred HHHHHHcCCceeEecc
Q psy11337 124 EAAAKQRNFPFWRISS 139 (155)
Q Consensus 124 e~aAk~~~~PFwrI~~ 139 (155)
...|++++.|+.+|+.
T Consensus 373 r~~a~~lgiP~~~i~~ 388 (519)
T PRK02910 373 RHSAKRLGIPCAVISA 388 (519)
T ss_pred HHHHHHcCCCEEEecc
Confidence 7789999999999976
No 155
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=52.82 E-value=1.8e+02 Score=26.61 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=16.9
Q ss_pred EecCCHHHHHHHHHcCCceeEecc
Q psy11337 116 VIGDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 116 vIGDG~eEe~aAk~~~~PFwrI~~ 139 (155)
+||... |...|+++|.||.+++.
T Consensus 388 lig~s~-~~~~A~klgip~~~~g~ 410 (457)
T TIGR02932 388 IMGHSK-GRYVAIDANIPMVRVGF 410 (457)
T ss_pred EEECCc-hHHHHHHcCCCEEEecC
Confidence 445553 56778889999999864
No 156
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=52.80 E-value=37 Score=27.74 Aligned_cols=40 Identities=18% Similarity=0.035 Sum_probs=33.7
Q ss_pred CCceEEEecCCHHHHHHHHHcCCceeEecccccHHHHHHHhh
Q psy11337 110 RKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAALYHALD 151 (155)
Q Consensus 110 ~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L~~al~ 151 (155)
+++.++|||. -..++++++||.-..+...+|..+|..|+.
T Consensus 209 ~~~~~~~ig~--~ta~a~~~~G~~~~~~a~~~t~~~L~~al~ 248 (255)
T PRK05752 209 ARLPLFVPSP--RVAEQARAAGAQTVVDCRGASAAALLAALR 248 (255)
T ss_pred cCceEEEeCH--HHHHHHHHcCCCceeeCCCCChHHHHHHHH
Confidence 3677888854 688899999999998988999999998875
No 157
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=52.64 E-value=6.7 Score=24.29 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=21.6
Q ss_pred CceEEEecCCHHHH---HHHHHcCCceeEec
Q psy11337 111 KCTYVVIGDGQDEE---AAAKQRNFPFWRIS 138 (155)
Q Consensus 111 k~~yvvIGDG~eEe---~aAk~~~~PFwrI~ 138 (155)
++|+||+++...++ ..|...+.|.++.+
T Consensus 41 ~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~ 71 (80)
T smart00292 41 TTTHVIVGSPEGGKLELLLAIALGIPIVTED 71 (80)
T ss_pred ceeEEEEcCCCCccHHHHHHHHcCCCCccHH
Confidence 79999999876654 67777888887654
No 158
>PRK05424 rplA 50S ribosomal protein L1; Validated
Probab=52.52 E-value=18 Score=30.43 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=22.0
Q ss_pred hCCCceEEEecCCHHHHHHHHHcCCcee
Q psy11337 108 FGRKCTYVVIGDGQDEEAAAKQRNFPFW 135 (155)
Q Consensus 108 FG~k~~yvvIGDG~eEe~aAk~~~~PFw 135 (155)
+|++.+=||++|| |.++.|+..|.+|+
T Consensus 68 ~gk~~kI~Vfa~~-~~~~~Ak~aGa~~v 94 (230)
T PRK05424 68 TGKTVRVAVFAKG-EKAEEAKAAGADIV 94 (230)
T ss_pred CCCCcEEEEECCh-HhHHHHHHcCCCEe
Confidence 4788899999998 45666899999875
No 159
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=51.59 E-value=23 Score=27.42 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=17.1
Q ss_pred hHHHHHHHHhCCCceEEEecCCHH
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQD 122 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~e 122 (155)
.+++++.++ ++++.++++|++.+
T Consensus 223 ~a~~~l~~~-~~~~~l~i~G~~~~ 245 (375)
T cd03821 223 EAFAKLAER-FPDWHLVIAGPDEG 245 (375)
T ss_pred HHHHHhhhh-cCCeEEEEECCCCc
Confidence 455666666 67899999998754
No 160
>KOG1099|consensus
Probab=51.20 E-value=17 Score=32.33 Aligned_cols=44 Identities=25% Similarity=0.375 Sum_probs=33.1
Q ss_pred hhcccccccCcccccc-ccChhhHHHHHHHHhCCCceEEEecCCH
Q psy11337 78 FGLSGIFDVENIYSST-KIGKDSCFERIVTRFGRKCTYVVIGDGQ 121 (155)
Q Consensus 78 ygL~~~fpieNIYSa~-k~GKescFerI~~RFG~k~~yvvIGDG~ 121 (155)
..|-++-|||-|---- .|-+.+|-|+|.+.||.--.=.||.||.
T Consensus 80 VDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcDGA 124 (294)
T KOG1099|consen 80 VDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVCDGA 124 (294)
T ss_pred EecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEeCCC
Confidence 3577889999876543 3779999999999997744445667774
No 161
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=50.05 E-value=1.8e+02 Score=25.70 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=39.5
Q ss_pred EEEeCCCchHHHHHHHHhhcccccccCccccccccChhhH-HHHHHHHhCCCceE-----------------EEecCCHH
Q psy11337 61 VIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSC-FERIVTRFGRKCTY-----------------VVIGDGQD 122 (155)
Q Consensus 61 VLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKesc-FerI~~RFG~k~~y-----------------vvIGDG~e 122 (155)
+++.-....=++++.|.-.||--+.. + .+..+...- ++.....++.++.+ ++||+. .
T Consensus 305 ~i~g~~~~~~~l~~~L~~elG~~vv~--~--~~~~~~~~~~~~~~~~~~~~~~~i~~D~~e~~~~i~~~~pdliig~~-~ 379 (430)
T cd01981 305 FVFGDATHVAAATRILAREMGFRVVG--A--GTYCKEDAKWFREQATGYCDEALITDDHTEVGDMIARTEPELIFGTQ-M 379 (430)
T ss_pred EEEcChHHHHHHHHHHHHHcCCEEEe--c--cCCCccHHHHHHHHHHhcCCceEEecCHHHHHHHHHhhCCCEEEecc-h
Confidence 34444567788899888666654332 2 222221111 11112223333221 344444 4
Q ss_pred HHHHHHHcCCceeEecc
Q psy11337 123 EEAAAKQRNFPFWRISS 139 (155)
Q Consensus 123 Ee~aAk~~~~PFwrI~~ 139 (155)
|...|++++.||.+++.
T Consensus 380 ~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 380 ERHIGKRLDIPCAVISA 396 (430)
T ss_pred hhHHHHHcCCCEEEEeC
Confidence 66688999999999855
No 162
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=49.88 E-value=24 Score=27.24 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=27.1
Q ss_pred hHHHHHHH----HhC--CCceEEEecCCHHHHHH-HHHcCCceeEecc
Q psy11337 99 SCFERIVT----RFG--RKCTYVVIGDGQDEEAA-AKQRNFPFWRISS 139 (155)
Q Consensus 99 scFerI~~----RFG--~k~~yvvIGDG~eEe~a-Ak~~~~PFwrI~~ 139 (155)
.+|+..++ +.| ...++|+|.|..+.-.. |+..++|.+.+..
T Consensus 91 ~~~~~a~~~l~~~~~~~~~~~~vaiT~~~s~l~~~a~~~~~~~~~~~~ 138 (158)
T cd05015 91 ANARLAREWLEEAGGDDLAKHFVAITDNGSGLLKKAGIEGLNTFEIPD 138 (158)
T ss_pred HHHHHHHHHHHHhccccccceEEEEcCCChHHHHHcCCCcceeeeCCC
Confidence 34554444 434 67799999997665555 7778888776543
No 163
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=49.81 E-value=34 Score=26.22 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=31.1
Q ss_pred hHHHHHHHHhCCCceEEEecCCHHHHHHHHH---cCCc-eeEec---ccccHHHHHHHhh
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQDEEAAAKQ---RNFP-FWRIS---SRSDLAALYHALD 151 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~eEe~aAk~---~~~P-FwrI~---~~~Dl~~L~~al~ 151 (155)
.+++.+.++ ++++.++++|+|.++....+. ++.+ .+.+- ++.++..++...+
T Consensus 222 ~~~~~~~~~-~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad 280 (377)
T cd03798 222 EALARLLKK-RPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAAD 280 (377)
T ss_pred HHHHHHHhc-CCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcC
Confidence 566666666 678999999999776543333 3432 33332 2345556655443
No 164
>PLN02828 formyltetrahydrofolate deformylase
Probab=49.74 E-value=33 Score=29.70 Aligned_cols=44 Identities=18% Similarity=0.457 Sum_probs=31.6
Q ss_pred ChhhHHHHHHHHh--CC-CceE-EEecCCH-----HHHHHHHHcCCceeEecc
Q psy11337 96 GKDSCFERIVTRF--GR-KCTY-VVIGDGQ-----DEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 96 GKescFerI~~RF--G~-k~~y-vvIGDG~-----eEe~aAk~~~~PFwrI~~ 139 (155)
|.-+||+-|..|+ |. ++.- +||++.. +-.+.|+++|+||..+..
T Consensus 79 g~g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~ 131 (268)
T PLN02828 79 KQDHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPT 131 (268)
T ss_pred CCChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCC
Confidence 4569999999998 43 3443 4445442 567789999999997754
No 165
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=49.72 E-value=46 Score=32.14 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=34.9
Q ss_pred hHHHHHHHHhCCCceEEEecCCHHHHH---HHHHcCC-c-eeEecccccHHHHHHHhhc
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQDEEA---AAKQRNF-P-FWRISSRSDLAALYHALDN 152 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~eEe~---aAk~~~~-P-FwrI~~~~Dl~~L~~al~~ 152 (155)
..|.++.++ .+++.+++||||.++++ -++++++ . +.-....+|+..++.+.+.
T Consensus 418 ~A~a~llk~-~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADV 475 (578)
T PRK15490 418 DFAARYLQH-HPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNV 475 (578)
T ss_pred HHHHHHHhH-CCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCE
Confidence 344455444 47899999999987653 4566665 3 3333456788888877654
No 166
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=49.15 E-value=41 Score=26.99 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=43.6
Q ss_pred ccChhhHHHHHHHHhC-CCceEEEecCCHHHHHHHHHcCCceeEecccccHHH
Q psy11337 94 KIGKDSCFERIVTRFG-RKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAA 145 (155)
Q Consensus 94 k~GKescFerI~~RFG-~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~ 145 (155)
.+.|.+-.+++.+++| ..-.-++||||.---+--+..+.+|--=++++++.+
T Consensus 194 gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~NA~~~vK~ 246 (270)
T PRK10513 194 RVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGNAIPSVKE 246 (270)
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecCccHHHHH
Confidence 4779999999999999 446789999998888888888888877777777655
No 167
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=49.07 E-value=42 Score=27.16 Aligned_cols=44 Identities=25% Similarity=0.396 Sum_probs=30.6
Q ss_pred ChhhHHHHHHHHh--CC-Cc-eEEEecCCHHHH--HHHHHcCCceeEecc
Q psy11337 96 GKDSCFERIVTRF--GR-KC-TYVVIGDGQDEE--AAAKQRNFPFWRISS 139 (155)
Q Consensus 96 GKescFerI~~RF--G~-k~-~yvvIGDG~eEe--~aAk~~~~PFwrI~~ 139 (155)
|..+||+-+.++. |. ++ .-+||+|..|-. +-|+++|+|+..++.
T Consensus 9 g~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~ 58 (190)
T TIGR00639 9 GNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSL 58 (190)
T ss_pred CCChhHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECc
Confidence 5569999999888 33 23 334568864432 568999999998653
No 168
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=48.98 E-value=1.7e+02 Score=25.83 Aligned_cols=116 Identities=18% Similarity=0.131 Sum_probs=60.2
Q ss_pred cCChhhHHHHHHHHHHh----------HHhhhHHHHHHHHHHhhhhcC-CCceEEEEeCCCchHHHHHHHHhhccccccc
Q psy11337 18 LLGPAKREEWLQLRAEI----------ESVTDNWLSLAIKCLTLINQR-PSCTNVIVITTQLIPALSKIMLFGLSGIFDV 86 (155)
Q Consensus 18 Ll~~~~r~~w~~lr~e~----------e~~Td~WLs~A~k~L~~i~~r-~~~vNVLVTt~qLVpaLaK~LLygL~~~fpi 86 (155)
.+|...-+.|++--++. |..-..+-..+.+.|+....+ ..-.-++.+....+-++++.| -.||--+..
T Consensus 237 p~G~~~t~~~l~~ia~~~g~~~~~~~~~~~i~~e~~~~~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l-~elGm~v~~ 315 (410)
T cd01968 237 FYGIRDTSKSLRNIAELLGDEELIERTEELIAREEARLRPELAPYRARLEGKKAALYTGGVKSWSLVSAL-QDLGMEVVA 315 (410)
T ss_pred cCcHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchHHHHHHHH-HHCCCEEEE
Confidence 46777667776544332 222223333344555544333 223335677788899999965 578865433
Q ss_pred CccccccccChhhHHHHHHHHhCCC-------------------ceEEEecCCHHHHHHHHHcCCceeEecc
Q psy11337 87 ENIYSSTKIGKDSCFERIVTRFGRK-------------------CTYVVIGDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 87 eNIYSa~k~GKescFerI~~RFG~k-------------------~~yvvIGDG~eEe~aAk~~~~PFwrI~~ 139 (155)
=-.+... + .=+++|.++.+.+ --=++||.. .|...|+++++||..++.
T Consensus 316 ~~~~~~~---~-~~~~~~~~~~~~~~~v~~~~~~~e~~~~i~~~~pDl~ig~s-~~~~~a~~~gip~~~~~~ 382 (410)
T cd01968 316 TGTQKGT---K-EDYERIKELLGEGTVIVDDANPRELKKLLKEKKADLLVAGG-KERYLALKLGIPFCDINH 382 (410)
T ss_pred EecccCC---H-HHHHHHHHHhCCCcEEEeCCCHHHHHHHHhhcCCCEEEECC-cchhhHHhcCCCEEEccc
Confidence 2111111 1 1133343333211 112356664 446788889999987653
No 169
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=48.96 E-value=26 Score=27.67 Aligned_cols=37 Identities=30% Similarity=0.470 Sum_probs=24.9
Q ss_pred HHHHHHHHhC-CCceEEEecCCHHHHHHHHHcCCceeE
Q psy11337 100 CFERIVTRFG-RKCTYVVIGDGQDEEAAAKQRNFPFWR 136 (155)
Q Consensus 100 cFerI~~RFG-~k~~yvvIGDG~eEe~aAk~~~~PFwr 136 (155)
|-.++.++++ +.-.-++||||.---.||+..++-|-|
T Consensus 144 ~K~~~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~~~ar 181 (214)
T TIGR03333 144 CKPSLIRKLSEPNDYHIVIGDSVTDVEAAKQSDLCFAR 181 (214)
T ss_pred CHHHHHHHHhhcCCcEEEEeCCHHHHHHHHhCCeeEeh
Confidence 3344444442 222337899999999999999986665
No 170
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=48.95 E-value=38 Score=27.86 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=21.1
Q ss_pred hhHHHHHHHHh--CCCceEEEecCCHH
Q psy11337 98 DSCFERIVTRF--GRKCTYVVIGDGQD 122 (155)
Q Consensus 98 escFerI~~RF--G~k~~yvvIGDG~e 122 (155)
..+|+++.+++ ++++.++++|+|..
T Consensus 230 l~a~~~l~~~~~~~~~~~l~i~G~~~~ 256 (392)
T cd03805 230 IEAFAILKDKLAEFKNVRLVIAGGYDP 256 (392)
T ss_pred HHHHHHHHhhcccccCeEEEEEcCCCC
Confidence 67899998887 48999999999853
No 171
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=48.66 E-value=2.6e+02 Score=28.05 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=53.6
Q ss_pred HHHHHhhhhcCCCc-eEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHHhCCCceE---------
Q psy11337 45 AIKCLTLINQRPSC-TNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFGRKCTY--------- 114 (155)
Q Consensus 45 A~k~L~~i~~r~~~-vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RFG~k~~y--------- 114 (155)
+...++....+-.- .=++.+.+.++-++++.|. .||--+-. ..++.+.+.-++++++..+..+..
T Consensus 307 ~~~~l~~~~~~L~GKrv~i~~g~~~~~~la~~l~-elGmevv~----~g~~~~~~~d~~~~~~~~~~~~~vi~~~d~~el 381 (917)
T PRK14477 307 CRAALAPYRARLEGKRVVLFTGGVKTWSMVNALR-ELGVEVLA----AGTQNSTLEDFARMKALMHKDAHIIEDTSTAGL 381 (917)
T ss_pred HHHHHHHHHHHccCCEEEEECCCchHHHHHHHHH-HCCCEEEE----EcCCCCCHHHHHHHHHhcCCCCEEEECCCHHHH
Confidence 34444444444333 3344566778999999885 66655422 344445555566666665433222
Q ss_pred ----------EEecCCHHHHHHHHHcCCceeEecc
Q psy11337 115 ----------VVIGDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 115 ----------vvIGDG~eEe~aAk~~~~PFwrI~~ 139 (155)
++||.+ .+...|+++++||..+..
T Consensus 382 ~~~i~~~~pDLlig~~-~~~~~a~k~giP~~~~~~ 415 (917)
T PRK14477 382 LRVMREKMPDLIVAGG-KTKFLALKTRTPFLDINH 415 (917)
T ss_pred HHHHHhcCCCEEEecC-chhhHHHHcCCCeEEccC
Confidence 345644 567788999999998765
No 172
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=48.35 E-value=25 Score=23.29 Aligned_cols=40 Identities=10% Similarity=-0.034 Sum_probs=29.4
Q ss_pred chhhhhhcccccCChhhHHHHHHHHHHhHHhhhHHHHHHHH
Q psy11337 7 NETTARLDACGLLGPAKREEWLQLRAEIESVTDNWLSLAIK 47 (155)
Q Consensus 7 ~y~~Y~~nv~~Ll~~~~r~~w~~lr~e~e~~Td~WLs~A~k 47 (155)
+++.|++++++.+++..++...++..+. .+...|+-.|.+
T Consensus 1 ~~~~~e~~~~~~~s~~e~~~l~~~~~~~-~~~~~~v~~ai~ 40 (77)
T PF07261_consen 1 LFEFYEKNFGRPPSPSEIEKLEKWIDDY-GFSPEVVNEAIE 40 (77)
T ss_dssp HHHHHHCCCTSS--HHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 4678999999999999888777665532 788888888754
No 173
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=48.14 E-value=49 Score=25.81 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=34.8
Q ss_pred hHHHHHHHHhCC------CceEEEecCCHHHHHHHHHcCCceeEecccccHHHH
Q psy11337 99 SCFERIVTRFGR------KCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAAL 146 (155)
Q Consensus 99 scFerI~~RFG~------k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L 146 (155)
+.++.+.+.+++ ++.+++|| +-..+++++++|+-..+..+|+..+|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~ig--~~ta~~l~~~g~~~~~va~~~~~~~l 229 (231)
T PF02602_consen 178 SAVRAFLELLKKNGALLKRVPIVAIG--PRTAKALRELGFKVDIVAERPTIEAL 229 (231)
T ss_dssp HHHHHHHHHSSGHHHHHTTSEEEESS--HHHHHHHHHTT-SCSEEESSSSHHHH
T ss_pred HHHHHHHHHhHhhhhhhhCCEEEEEC--HHHHHHHHHcCCCceEECCCCChhHh
Confidence 455556666653 67777775 56889999999999999999998876
No 174
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=47.77 E-value=33 Score=31.61 Aligned_cols=75 Identities=24% Similarity=0.346 Sum_probs=52.5
Q ss_pred ceEEEEeC-CCchHHHHHHHHhh---ccccccc------CccccccccChhhHHHHHHHHhCCCceEEEecCCHH---HH
Q psy11337 58 CTNVIVIT-TQLIPALSKIMLFG---LSGIFDV------ENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQD---EE 124 (155)
Q Consensus 58 ~vNVLVTt-~qLVpaLaK~LLyg---L~~~fpi------eNIYSa~k~GKescFerI~~RFG~k~~yvvIGDG~e---Ee 124 (155)
-+..+=+| -|+-|.|-|.+=+. .|+.|=- .||.-+...-|-+-..-|..|| ++..||.|||..| |-
T Consensus 215 pvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~sga~rK~~~l~nil~~~-p~~kfvLVGDsGE~DpeI 293 (373)
T COG4850 215 PVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIESGAARKGQSLRNILRRY-PDRKFVLVGDSGEHDPEI 293 (373)
T ss_pred CeEEecCChhHhHHHHHHHHhcCCCCCCchhHhhcCCcccccccchhhhcccHHHHHHHhC-CCceEEEecCCCCcCHHH
Confidence 44444333 28999999998776 3443322 6777777778889998899999 5667999999865 33
Q ss_pred HHHHHcCCc
Q psy11337 125 AAAKQRNFP 133 (155)
Q Consensus 125 ~aAk~~~~P 133 (155)
=|+-...||
T Consensus 294 Yae~v~~fP 302 (373)
T COG4850 294 YAEMVRCFP 302 (373)
T ss_pred HHHHHHhCc
Confidence 355555565
No 175
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast. This model describes bacterial (and chloroplast) ribosomal protein L1. The apparent mitochondrial L1 is sufficiently diverged to be the subject of a separate model.
Probab=47.70 E-value=24 Score=29.66 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=21.9
Q ss_pred hCCCceEEEecCCHHHHHHHHHcCCcee
Q psy11337 108 FGRKCTYVVIGDGQDEEAAAKQRNFPFW 135 (155)
Q Consensus 108 FG~k~~yvvIGDG~eEe~aAk~~~~PFw 135 (155)
+|++.+=||++|| |.++.|+..|-+|+
T Consensus 67 ~gk~~kV~Vfa~~-~~~~~Ak~aGa~~v 93 (227)
T TIGR01169 67 TGKTVRVAVFAKG-EKAEEAKAAGADYV 93 (227)
T ss_pred CCCCcEEEEEcCc-hhHHHHHHcCCCEe
Confidence 4778889999998 56777899998865
No 176
>PRK06483 dihydromonapterin reductase; Provisional
Probab=46.93 E-value=1.3e+02 Score=23.15 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=29.5
Q ss_pred ccCccccccccChhhHHHHHHHHhCCCceEEEecCC
Q psy11337 85 DVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDG 120 (155)
Q Consensus 85 pieNIYSa~k~GKescFerI~~RFG~k~~yvvIGDG 120 (155)
|-...|+++|.+=+.-.+.+...++++++..+|.-|
T Consensus 143 ~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg 178 (236)
T PRK06483 143 DKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPA 178 (236)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccC
Confidence 445789999999999999999999887887776644
No 177
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=46.85 E-value=65 Score=24.43 Aligned_cols=52 Identities=25% Similarity=0.410 Sum_probs=30.0
Q ss_pred hHHHHHHHHhCCCceEEEecCCHHHHHHHH---HcCC----ceeEecccccHHHHHHHhh
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQDEEAAAK---QRNF----PFWRISSRSDLAALYHALD 151 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~eEe~aAk---~~~~----PFwrI~~~~Dl~~L~~al~ 151 (155)
.+|+.+.++ +++++++++|+|.+.+...+ +++. -|..--++.|+..++...+
T Consensus 219 ~~~~~~~~~-~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d 277 (374)
T cd03801 219 EALAKLRKE-YPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAAD 277 (374)
T ss_pred HHHHHHhhh-cCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcC
Confidence 344444433 36899999999877665443 2333 2333333566777766544
No 178
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=46.80 E-value=29 Score=32.47 Aligned_cols=25 Identities=24% Similarity=0.131 Sum_probs=21.5
Q ss_pred EEecCCHHHHHHHHHcCCceeEeccc
Q psy11337 115 VVIGDGQDEEAAAKQRNFPFWRISSR 140 (155)
Q Consensus 115 vvIGDG~eEe~aAk~~~~PFwrI~~~ 140 (155)
+||||+ =..+.|+++|+|..-|.+.
T Consensus 148 ~viG~~-~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 148 AVVGAG-LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred EEECCh-HHHHHHHHcCCceEEEecH
Confidence 678999 5577889999999999884
No 179
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=46.79 E-value=50 Score=27.49 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=30.7
Q ss_pred hhHHHHHHHHhCCCceEEEecCCHHH--------HHHHHHcCC----ceeEec--ccccHHHHHHHhhc
Q psy11337 98 DSCFERIVTRFGRKCTYVVIGDGQDE--------EAAAKQRNF----PFWRIS--SRSDLAALYHALDN 152 (155)
Q Consensus 98 escFerI~~RFG~k~~yvvIGDG~eE--------e~aAk~~~~----PFwrI~--~~~Dl~~L~~al~~ 152 (155)
...|+.+.++ .+++.++++|+|.++ ++..+..+. =|.-.. ++.++..++.+.+.
T Consensus 209 l~a~~~l~~~-~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~ 276 (372)
T cd03792 209 IDAYRKVKER-VPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTV 276 (372)
T ss_pred HHHHHHHHhh-CCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeE
Confidence 4566666655 367999999999531 222222332 132222 45667788777654
No 180
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=46.71 E-value=73 Score=27.24 Aligned_cols=53 Identities=23% Similarity=0.267 Sum_probs=31.2
Q ss_pred hHHHHHHHHhCCCceEEEecCCHHH------------HHHHHHcCCceeEec--ccccHHHHHHHhhc
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQDE------------EAAAKQRNFPFWRIS--SRSDLAALYHALDN 152 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~eE------------e~aAk~~~~PFwrI~--~~~Dl~~L~~al~~ 152 (155)
+.|.++.++ ++++++++||||.+. ++.|+.++-...-+. ++.++..++.+.+.
T Consensus 213 ~A~~~l~~~-~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv 279 (380)
T PRK15484 213 QAFEKLATA-HSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADL 279 (380)
T ss_pred HHHHHHHHh-CCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCE
Confidence 455665544 578999999998631 113344443322222 24578888877654
No 181
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=46.56 E-value=1.7e+02 Score=24.41 Aligned_cols=77 Identities=21% Similarity=0.180 Sum_probs=46.9
Q ss_pred ceEEEEeCCCchHHHHHHH-Hhhccccccc--CccccccccCh----hhHHHHHHHHhCCCceEEEecCCHH---HHHHH
Q psy11337 58 CTNVIVITTQLIPALSKIM-LFGLSGIFDV--ENIYSSTKIGK----DSCFERIVTRFGRKCTYVVIGDGQD---EEAAA 127 (155)
Q Consensus 58 ~vNVLVTt~qLVpaLaK~L-LygL~~~fpi--eNIYSa~k~GK----escFerI~~RFG~k~~yvvIGDG~e---Ee~aA 127 (155)
..-|+||..++ -++...+ .|++..-+++ .. .+.+...+ ..-|.++.+++.+++..|. ||..+ -..||
T Consensus 30 ~~~~~~tg~h~-~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~~-gd~~~~la~a~aa 106 (365)
T TIGR00236 30 DSYVIVTAQHR-EMLDQVLDLFHLPPDYDLNIMS-PGQTLGEITSNMLEGLEELLLEEKPDIVLVQ-GDTTTTLAGALAA 106 (365)
T ss_pred CEEEEEeCCCH-HHHHHHHHhcCCCCCeeeecCC-CCCCHHHHHHHHHHHHHHHHHHcCCCEEEEe-CCchHHHHHHHHH
Confidence 46688888887 3333333 3555533322 22 22222112 2457888889988887766 77533 34578
Q ss_pred HHcCCceeEe
Q psy11337 128 KQRNFPFWRI 137 (155)
Q Consensus 128 k~~~~PFwrI 137 (155)
+.++.|...+
T Consensus 107 ~~~~ipv~h~ 116 (365)
T TIGR00236 107 FYLQIPVGHV 116 (365)
T ss_pred HHhCCCEEEE
Confidence 9999999876
No 182
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=46.09 E-value=32 Score=24.79 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=33.0
Q ss_pred cccccccChhhHHHHHHHHhCCCceEEEecCCHHHHHHH
Q psy11337 89 IYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAA 127 (155)
Q Consensus 89 IYSa~k~GKescFerI~~RFG~k~~yvvIGDG~eEe~aA 127 (155)
+++...+||-+.-+.+.+.+|.++..+.+..+.++++--
T Consensus 4 L~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 4 LVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccce
Confidence 467889999999999999999999999999888887643
No 183
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=46.05 E-value=58 Score=24.92 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=26.6
Q ss_pred CCCceEEEecCCHHHHHHHH----Hc-CCceeEe-cccccHHHHHHHhh
Q psy11337 109 GRKCTYVVIGDGQDEEAAAK----QR-NFPFWRI-SSRSDLAALYHALD 151 (155)
Q Consensus 109 G~k~~yvvIGDG~eEe~aAk----~~-~~PFwrI-~~~~Dl~~L~~al~ 151 (155)
++++.++++|+|.+++...+ +. .-+.+++ ....|+..++.+.+
T Consensus 217 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad 265 (359)
T cd03808 217 GPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAAD 265 (359)
T ss_pred CCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhcc
Confidence 57899999999987665432 22 1222222 22667777777654
No 184
>PRK10976 putative hydrolase; Provisional
Probab=45.82 E-value=44 Score=26.82 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=44.7
Q ss_pred cccChhhHHHHHHHHhC-CCceEEEecCCHHHHHHHHHcCCceeEecccccHHHH
Q psy11337 93 TKIGKDSCFERIVTRFG-RKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAAL 146 (155)
Q Consensus 93 ~k~GKescFerI~~RFG-~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L 146 (155)
..+.|.+-.+++.+++| ..-.-++|||+.---+.=+..+.+|--=+.++++.+.
T Consensus 187 ~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~NA~~~vK~~ 241 (266)
T PRK10976 187 GGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGNAHQRLKDL 241 (266)
T ss_pred CCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecCCcHHHHHh
Confidence 34679999999999998 5567899999988888888888888877777777664
No 185
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=45.78 E-value=2.3e+02 Score=25.59 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=45.2
Q ss_pred EEEeCCCchHHHHHHHHhhcccccccCcccc-----------ccccChhhHHHHHHHHhCCCceEEEecCCHHHHHHHHH
Q psy11337 61 VIVITTQLIPALSKIMLFGLSGIFDVENIYS-----------STKIGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAAKQ 129 (155)
Q Consensus 61 VLVTt~qLVpaLaK~LLygL~~~fpieNIYS-----------a~k~GKescFerI~~RFG~k~~yvvIGDG~eEe~aAk~ 129 (155)
++.+.+..+-++++.|. .||--+..=-+.+ ...++...=++++..+.++. ++||.. -|...|++
T Consensus 315 ai~~~~~~~~~l~~~l~-elGm~v~~~~~~~~~~~~~~~~~~~~~~~D~~~l~~~i~~~~~d---liig~s-~~k~~A~~ 389 (432)
T TIGR01285 315 AIAAEPDLLAAWATFFT-SMGAQIVAAVTTTGSPLLQKLPVETVVIGDLEDLEDLACAAGAD---LLITNS-HGRALAQR 389 (432)
T ss_pred EEEcCHHHHHHHHHHHH-HCCCEEEEEEeCCCCHHHHhCCcCcEEeCCHHHHHHHHhhcCCC---EEEECc-chHHHHHH
Confidence 55666778899999965 6775432211111 11123333345555555433 567777 45789999
Q ss_pred cCCceeEecc
Q psy11337 130 RNFPFWRISS 139 (155)
Q Consensus 130 ~~~PFwrI~~ 139 (155)
+++||.|++.
T Consensus 390 l~ip~ir~g~ 399 (432)
T TIGR01285 390 LALPLVRAGF 399 (432)
T ss_pred cCCCEEEecC
Confidence 9999998876
No 186
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=45.52 E-value=2e+02 Score=24.72 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=49.1
Q ss_pred HHhhhhcCCCceEEEEeCCCchHHHHHHH--Hhhcc---cccccCccccccccChhhHHHHHHHHhCCCceEEEecCCHH
Q psy11337 48 CLTLINQRPSCTNVIVITTQLIPALSKIM--LFGLS---GIFDVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQD 122 (155)
Q Consensus 48 ~L~~i~~r~~~vNVLVTt~qLVpaLaK~L--LygL~---~~fpieNIYSa~k~GKescFerI~~RFG~k~~yvvIGDG~e 122 (155)
.++.+.++...+.|+||++. |+-.... .++-+ -++|++.. ....++..++.+++..++-+|-+-
T Consensus 69 l~~~l~~~~~~~~i~~t~~t--~~~~~~~~~~~~~~~~~~~~P~d~~---------~~~~~~l~~~~Pd~v~~~~~~~~~ 137 (425)
T PRK05749 69 LIRALRKRYPDLPILVTTMT--PTGSERAQALFGDDVEHRYLPYDLP---------GAVRRFLRFWRPKLVIIMETELWP 137 (425)
T ss_pred HHHHHHHhCCCCcEEEeCCC--ccHHHHHHHhcCCCceEEEecCCcH---------HHHHHHHHhhCCCEEEEEecchhH
Confidence 33334455556778888754 3222222 22211 14455433 578888999999988666566554
Q ss_pred HH-HHHHHcCCceeEeccc
Q psy11337 123 EE-AAAKQRNFPFWRISSR 140 (155)
Q Consensus 123 Ee-~aAk~~~~PFwrI~~~ 140 (155)
.- .+|++.+.|.+-++.+
T Consensus 138 ~~l~~~~~~~ip~vl~~~~ 156 (425)
T PRK05749 138 NLIAELKRRGIPLVLANAR 156 (425)
T ss_pred HHHHHHHHCCCCEEEEecc
Confidence 43 3678899999877544
No 187
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=45.24 E-value=36 Score=26.95 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=31.4
Q ss_pred hHHHHHHHHhCCCceEEEecCCHHHHH---HHHHcCCc-eeEec---ccccHHHHHHHhh
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQDEEA---AAKQRNFP-FWRIS---SRSDLAALYHALD 151 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~eEe~---aAk~~~~P-FwrI~---~~~Dl~~L~~al~ 151 (155)
.+++++..+ ++++.+.++|+|.+.++ .+++++.+ .+++- ...|+.+++.+.+
T Consensus 199 ~~~~~l~~~-~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad 257 (355)
T cd03799 199 EALALLKDR-GIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAAD 257 (355)
T ss_pred HHHHHHhhc-CCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCC
Confidence 455555555 68999999999976543 34444442 33332 3456777766554
No 188
>PRK05993 short chain dehydrogenase; Provisional
Probab=44.69 E-value=1.3e+02 Score=24.13 Aligned_cols=82 Identities=16% Similarity=0.283 Sum_probs=51.2
Q ss_pred HHHHHHHhHHhhhHHHHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHH
Q psy11337 27 WLQLRAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVT 106 (155)
Q Consensus 27 w~~lr~e~e~~Td~WLs~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~ 106 (155)
..++...++.-..+....++.++.....+... .|+.+|+. .+..+ .|-...|+++|.+=++..+-+..
T Consensus 97 ~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g-~iv~isS~----------~~~~~-~~~~~~Y~asK~a~~~~~~~l~~ 164 (277)
T PRK05993 97 TEALRAQFEANFFGWHDLTRRVIPVMRKQGQG-RIVQCSSI----------LGLVP-MKYRGAYNASKFAIEGLSLTLRM 164 (277)
T ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCC-EEEEECCh----------hhcCC-CCccchHHHHHHHHHHHHHHHHH
Confidence 34445556666667777777777776544322 34444431 12111 34467899999999998888877
Q ss_pred Hh-CCCceEEEecCC
Q psy11337 107 RF-GRKCTYVVIGDG 120 (155)
Q Consensus 107 RF-G~k~~yvvIGDG 120 (155)
.+ .+.+++++|--|
T Consensus 165 el~~~gi~v~~v~Pg 179 (277)
T PRK05993 165 ELQGSGIHVSLIEPG 179 (277)
T ss_pred HhhhhCCEEEEEecC
Confidence 76 345777777655
No 189
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=44.53 E-value=2e+02 Score=24.64 Aligned_cols=115 Identities=11% Similarity=-0.016 Sum_probs=73.3
Q ss_pred HHHHHHHHhHHhhhHHHHH----HHHHHhhhhcCCCceEEEEeCCCchHH--HHHHHHhhcccccccCccccccccChhh
Q psy11337 26 EWLQLRAEIESVTDNWLSL----AIKCLTLINQRPSCTNVIVITTQLIPA--LSKIMLFGLSGIFDVENIYSSTKIGKDS 99 (155)
Q Consensus 26 ~w~~lr~e~e~~Td~WLs~----A~k~L~~i~~r~~~vNVLVTt~qLVpa--LaK~LLygL~~~fpieNIYSa~k~GKes 99 (155)
.+.++...++...+..... .-++..+-........|+.+++.+-+. --|-++=.-....|.-++++-.-..-.+
T Consensus 164 d~~~~~~~l~~~~~~~~~~~~~~~~~A~~lA~~~~~~~pv~~gs~~~~~~a~~~~~~~~Ena~~~~~~~~~pe~~H~~~~ 243 (337)
T PRK08674 164 EVLETKIVLSELAEGLKEKVPTLKNLAKRLAGKLYGRIPVIYGSGLTLAVAYRWKTQINENAKYPAFYNEIPELNHNEIV 243 (337)
T ss_pred hHHHHHHHHHHHHHhhCcCCCcccCHHHHHHHHHhCCCCEEEeCcccHHHHHHHHHHHHHhcCCccccccCCccccccee
Confidence 6666666666655543211 112222222223348888886555442 3477787878888998988888777777
Q ss_pred HHHHHHHHhCCCceEEEecCCH---------HHHHHHHHcCCceeEecccc
Q psy11337 100 CFERIVTRFGRKCTYVVIGDGQ---------DEEAAAKQRNFPFWRISSRS 141 (155)
Q Consensus 100 cFerI~~RFG~k~~yvvIGDG~---------eEe~aAk~~~~PFwrI~~~~ 141 (155)
.|+.=..++ +.++++++.|.. -.+++++..+.|+..|....
T Consensus 244 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~~~g 293 (337)
T PRK08674 244 GYERPQSLL-KYFFVVVLRDSEHPRIKKRVEITIDILTEAVINVIEIYPEG 293 (337)
T ss_pred eccCchhhc-cceEEEEEcCCccHHHHHHHHHHHHHHHhcCCCeEEEecCC
Confidence 777643344 568888887765 12456677899999999984
No 190
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=44.26 E-value=24 Score=28.02 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=33.5
Q ss_pred cccccccChhhHHHHHHHHhCCCceEEEecCCHHHHHHHHH
Q psy11337 89 IYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAAKQ 129 (155)
Q Consensus 89 IYSa~k~GKescFerI~~RFG~k~~yvvIGDG~eEe~aAk~ 129 (155)
|.+-++-||-+==|++..++|+++.|++-+.-.|+|-++|.
T Consensus 3 v~GG~rSGKS~~Ae~la~~~~~~~~YiAT~~~~D~em~~RI 43 (167)
T PF02283_consen 3 VTGGARSGKSSFAERLALSFGGPVTYIATARPFDEEMRERI 43 (167)
T ss_dssp EEESTTSSHHHHHHHHHTS--SCEEEEESSHHHHHHHHHHH
T ss_pred EeCCCCcchHHHHHHHHHhcCCCcEEEeCCCCCCHHHHHHH
Confidence 34667889999999999999999999999999998877754
No 191
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=43.97 E-value=75 Score=25.66 Aligned_cols=42 Identities=14% Similarity=0.331 Sum_probs=26.4
Q ss_pred CCceEEEecCCHHHHH---HHHHcCCc--eeEecccccHHHHHHHhh
Q psy11337 110 RKCTYVVIGDGQDEEA---AAKQRNFP--FWRISSRSDLAALYHALD 151 (155)
Q Consensus 110 ~k~~yvvIGDG~eEe~---aAk~~~~P--FwrI~~~~Dl~~L~~al~ 151 (155)
++++++++|+|.++++ -+++.+.+ +.-+...+|+..++.+.+
T Consensus 226 ~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d 272 (371)
T cd04962 226 VPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIAD 272 (371)
T ss_pred CCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcC
Confidence 4689999999976544 24455553 222345667777776654
No 192
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=43.84 E-value=37 Score=26.30 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=34.7
Q ss_pred ChhhHHHHHHHHhC-CCceEE-EecCCHHHHHHHHHcCCceeEe
Q psy11337 96 GKDSCFERIVTRFG-RKCTYV-VIGDGQDEEAAAKQRNFPFWRI 137 (155)
Q Consensus 96 GKescFerI~~RFG-~k~~yv-vIGDG~eEe~aAk~~~~PFwrI 137 (155)
=|..|.++|++.|. .+..|+ ++|++..--+|=++.++|--||
T Consensus 102 ~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~~~~i 145 (157)
T smart00775 102 FKIACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIPPSRI 145 (157)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCChhhE
Confidence 48899999999996 455665 5899888888999999997665
No 193
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=43.77 E-value=47 Score=27.93 Aligned_cols=87 Identities=25% Similarity=0.276 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccc------cccccChhhHHHHHHHHhCCCc
Q psy11337 39 DNWLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIY------SSTKIGKDSCFERIVTRFGRKC 112 (155)
Q Consensus 39 d~WLs~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIY------Sa~k~GKescFerI~~RFG~k~ 112 (155)
..|...|.++++.|.+| +-+=|||--|.| -.|-||+|+...-+.+.-- .....|.+.+++++.+.
T Consensus 39 ~~f~~~a~~~i~~i~~r-gk~PIlvGGTgl---Yi~all~g~~~~p~~~~~~r~~~~~~~~~~~~~~l~~~L~~~----- 109 (253)
T PF01715_consen 39 GDFQRDAREAIEDILAR-GKIPILVGGTGL---YIQALLNGLADIPEVDPELRAELRAELEEEGNEELYEELKEV----- 109 (253)
T ss_dssp HHHHHHHHHHHHHHHHT-T-EEEEEES-HH---HHHHHHCTS--TSSSHHHHHHHHHHHHHHSCHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHhc-CCeEEEECChHH---HHHHHHhChhhhccccHHHHHHHHHHHHhccHHHHHHHHHhh-----
Confidence 57899999999999987 667788887776 5788899987543332111 01246888888888753
Q ss_pred eEEEecCCHHHHHHHHHcCCceeEecccccHHHHHHHhhc
Q psy11337 113 TYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAALYHALDN 152 (155)
Q Consensus 113 ~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L~~al~~ 152 (155)
|.+.|+|.+ -+|..++.+|||.
T Consensus 110 ---------DP~~A~~i~---------~nd~~Ri~RALei 131 (253)
T PF01715_consen 110 ---------DPEAAAKIH---------PNDRRRIIRALEI 131 (253)
T ss_dssp ----------HHHHCTS----------TT-HHHHHHHHHH
T ss_pred ---------CcHhhhcCC---------CCcHHHHHHHHHH
Confidence 666666544 3578888888863
No 194
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=43.69 E-value=17 Score=31.91 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=54.2
Q ss_pred chhhhhhcccccCCh-hhHHHHHHHHHHhHHhhhHHHHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccc
Q psy11337 7 NETTARLDACGLLGP-AKREEWLQLRAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFD 85 (155)
Q Consensus 7 ~y~~Y~~nv~~Ll~~-~~r~~w~~lr~e~e~~Td~WLs~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fp 85 (155)
-|.+|.+++...|.. +.-++|.++-+ ||+.-.|+|. ...+...++--..++--.||+| |++..|
T Consensus 4 k~kky~~~v~k~L~~Fe~~~EWAD~is--------~L~kL~k~lq---~~~~~~~~IP~k~~v~krLaqC----L~P~LP 68 (307)
T PF04118_consen 4 KYKKYNAEVEKALKSFESSSEWADYIS--------FLGKLLKALQ---NSNNQFPYIPHKLQVSKRLAQC----LNPALP 68 (307)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHH--------HHHHHHHHHh---ccCCCCceeCcHHHHHHHHHHh----cCCCCC
Confidence 378899999998866 67889999876 8888888888 3333344444444555556665 455555
Q ss_pred cCccccccccChhhHHHHHHHHhCC
Q psy11337 86 VENIYSSTKIGKDSCFERIVTRFGR 110 (155)
Q Consensus 86 ieNIYSa~k~GKescFerI~~RFG~ 110 (155)
.. -..-=..+++.|-++-|+
T Consensus 69 sG-----VH~KaLevY~~IF~~ig~ 88 (307)
T PF04118_consen 69 SG-----VHQKALEVYEYIFERIGP 88 (307)
T ss_pred hH-----HHHHHHHHHHHHHHhcCH
Confidence 31 112235666667666654
No 195
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=43.49 E-value=1e+02 Score=26.50 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhhhcCCCceEEEEeCCC---chHHHHHHHHhhcccccccCcccccc-ccChhhHHHHHHHHhCCCceEEE
Q psy11337 41 WLSLAIKCLTLINQRPSCTNVIVITTQ---LIPALSKIMLFGLSGIFDVENIYSST-KIGKDSCFERIVTRFGRKCTYVV 116 (155)
Q Consensus 41 WLs~A~k~L~~i~~r~~~vNVLVTt~q---LVpaLaK~LLygL~~~fpieNIYSa~-k~GKescFerI~~RFG~k~~yvv 116 (155)
++.-|..+|..+.++ +.--++||+.. .-.++..+--+|+...+ .+.|+.-. .-.|+..++.|.++|+- .+.
T Consensus 119 ~ipGA~e~L~~L~~~-G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~-~d~lllr~~~~~K~~rr~~I~~~y~I---vl~ 193 (266)
T TIGR01533 119 PVAGALDFLNYANSK-GVKIFYVSNRSEKEKAATLKNLKRFGFPQAD-EEHLLLKKDKSSKESRRQKVQKDYEI---VLL 193 (266)
T ss_pred cCccHHHHHHHHHHC-CCeEEEEeCCCcchHHHHHHHHHHcCcCCCC-cceEEeCCCCCCcHHHHHHHHhcCCE---EEE
Confidence 566677788777665 34466778754 33455555567876543 24444332 24699999999986643 799
Q ss_pred ecCCHHHH
Q psy11337 117 IGDGQDEE 124 (155)
Q Consensus 117 IGDG~eEe 124 (155)
|||...--
T Consensus 194 vGD~~~Df 201 (266)
T TIGR01533 194 FGDNLLDF 201 (266)
T ss_pred ECCCHHHh
Confidence 99985443
No 196
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=43.22 E-value=72 Score=24.70 Aligned_cols=31 Identities=23% Similarity=0.108 Sum_probs=24.4
Q ss_pred CHHHHHHHHHcCCceeEecccccHHHHHHHh
Q psy11337 120 GQDEEAAAKQRNFPFWRISSRSDLAALYHAL 150 (155)
Q Consensus 120 G~eEe~aAk~~~~PFwrI~~~~Dl~~L~~al 150 (155)
..|=...|+.++++.++|....|+..+..|+
T Consensus 130 ~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al 160 (178)
T cd02008 130 VIDIEALVRAIGVKRVVVVDPYDLKAIREEL 160 (178)
T ss_pred ccCHHHHHHHCCCCEEEecCccCHHHHHHHH
Confidence 3577888999999999999999986554443
No 197
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial. This model represents the mitochondrial homolog of bacterial ribosomal protein L1. Unlike chloroplast L1, this form was not sufficiently similar to bacterial forms to include in a single bacterial/organellar L1.
Probab=42.89 E-value=37 Score=26.75 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=21.3
Q ss_pred hCCCceEEEecCCHHHHHHHHHcCCce
Q psy11337 108 FGRKCTYVVIGDGQDEEAAAKQRNFPF 134 (155)
Q Consensus 108 FG~k~~yvvIGDG~eEe~aAk~~~~PF 134 (155)
+|++.+-+|+++|.++.+.||+.+-.+
T Consensus 49 ~~k~~kV~Vf~~~~~~~~~Ak~aGa~~ 75 (141)
T TIGR01170 49 FGKEPKIAVFTKGASEVEEAREAGADY 75 (141)
T ss_pred CCCCCEEEEECCChHHHHHHHHcCCCE
Confidence 467788999999977677788887654
No 198
>PRK06398 aldose dehydrogenase; Validated
Probab=42.89 E-value=1.7e+02 Score=23.24 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=31.1
Q ss_pred ccCccccccccChhhHHHHHHHHhCCCceEEEecCCH
Q psy11337 85 DVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQ 121 (155)
Q Consensus 85 pieNIYSa~k~GKescFerI~~RFG~k~~yvvIGDG~ 121 (155)
|-...|+++|.+=++-.+.+...++++++..+|.-|.
T Consensus 139 ~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~ 175 (258)
T PRK06398 139 RNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGS 175 (258)
T ss_pred CCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 4567899999999999999988898888888887663
No 199
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=42.78 E-value=61 Score=22.26 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=21.4
Q ss_pred HHHHHHHhCCCceEEEecCCHHHHH--HHHHcCCc
Q psy11337 101 FERIVTRFGRKCTYVVIGDGQDEEA--AAKQRNFP 133 (155)
Q Consensus 101 FerI~~RFG~k~~yvvIGDG~eEe~--aAk~~~~P 133 (155)
++++.+.|..+...++|.|+..|+. -+++++++
T Consensus 43 l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~ 77 (114)
T cd02967 43 IRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLE 77 (114)
T ss_pred HHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCC
Confidence 5777777766788888877643333 45566654
No 200
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=41.99 E-value=1.1e+02 Score=22.37 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=45.9
Q ss_pred HHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHHhCCC
Q psy11337 43 SLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFGRK 111 (155)
Q Consensus 43 s~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RFG~k 111 (155)
..+.++++.+.++.+ +-|++-|.++...+-..+---+-.+++|-...++...|+.++.++++.-.|-+
T Consensus 30 ee~~~~l~~l~~~~d-~gII~ite~~~~~i~~~i~~~~P~Ii~IP~~~g~~~~~~~~i~~~v~raiG~d 97 (100)
T PRK03957 30 EEAKNAIKELVENDE-IGIIIITERIAEEIRDLISVALPIIVEIPDKSGSIERENDPVKELVRRAIGVE 97 (100)
T ss_pred HHHHHHHHHHhhCCC-eEEEEEcHHHHHHHHHHHhcCCCEEEEECCCCCCCccchHHHHHHHHHHhCcc
Confidence 345666666666665 55555566677766554442333445667777888899999999999888854
No 201
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=41.06 E-value=38 Score=29.42 Aligned_cols=55 Identities=18% Similarity=0.100 Sum_probs=34.2
Q ss_pred hhHHHHHHHHh-----CCCceEEEecCCHHHHH---HHHHcCCceeEe----cccccHHHHHHHhhc
Q psy11337 98 DSCFERIVTRF-----GRKCTYVVIGDGQDEEA---AAKQRNFPFWRI----SSRSDLAALYHALDN 152 (155)
Q Consensus 98 escFerI~~RF-----G~k~~yvvIGDG~eEe~---aAk~~~~PFwrI----~~~~Dl~~L~~al~~ 152 (155)
...++.+++.. .++..+++||||.++++ -++++++.-+.+ -.+.|+..++.+.+.
T Consensus 251 i~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv 317 (415)
T cd03816 251 LDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADL 317 (415)
T ss_pred HHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCE
Confidence 34455555432 25799999999976543 556677653222 146778777777664
No 202
>PRK14098 glycogen synthase; Provisional
Probab=41.01 E-value=53 Score=29.85 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=24.2
Q ss_pred CCceEEEecCCHHH-H----HHHHHc--CCceeEecccccHHHHHHHhhc
Q psy11337 110 RKCTYVVIGDGQDE-E----AAAKQR--NFPFWRISSRSDLAALYHALDN 152 (155)
Q Consensus 110 ~k~~yvvIGDG~eE-e----~aAk~~--~~PFwrI~~~~Dl~~L~~al~~ 152 (155)
+++.+|++|+|.++ + +-++++ ++-|.---+++++..++.+.|.
T Consensus 335 ~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi 384 (489)
T PRK14098 335 LDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDM 384 (489)
T ss_pred cCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCE
Confidence 36899999999643 1 122333 2334333344556777777654
No 203
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=40.86 E-value=1.9e+02 Score=23.26 Aligned_cols=92 Identities=21% Similarity=0.282 Sum_probs=64.3
Q ss_pred HHHHHhhhhcCCCceEEEEeCCCchHHHHHHH-HhhcccccccCcccccc-ccCh--hhHHHHHHHHhC-CCceEEEecC
Q psy11337 45 AIKCLTLINQRPSCTNVIVITTQLIPALSKIM-LFGLSGIFDVENIYSST-KIGK--DSCFERIVTRFG-RKCTYVVIGD 119 (155)
Q Consensus 45 A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~L-LygL~~~fpieNIYSa~-k~GK--escFerI~~RFG-~k~~yvvIGD 119 (155)
+..+|+...++. +=+-|+|++=-...-..| ..||..+|+. .|++.. +.|| -..|-.=.+|+| ..-..|||-|
T Consensus 91 v~~~l~~L~~~~--i~~avaS~s~~~~~~~~L~~~gl~~~f~~-~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~CvviED 167 (221)
T COG0637 91 VVELLEQLKARG--IPLAVASSSPRRAAERVLARLGLLDYFDV-IVTADDVARGKPAPDIYLLAAERLGVDPEECVVVED 167 (221)
T ss_pred HHHHHHHHHhcC--CcEEEecCChHHHHHHHHHHccChhhcch-hccHHHHhcCCCCCHHHHHHHHHcCCChHHeEEEec
Confidence 345555555544 555555555433444444 5888888886 344332 2344 578999999998 4477899999
Q ss_pred CHHHHHHHHHcCCceeEecc
Q psy11337 120 GQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 120 G~eEe~aAk~~~~PFwrI~~ 139 (155)
..--=+||++.||-.+-|..
T Consensus 168 s~~Gi~Aa~aAGm~vv~v~~ 187 (221)
T COG0637 168 SPAGIQAAKAAGMRVVGVPA 187 (221)
T ss_pred chhHHHHHHHCCCEEEEecC
Confidence 99999999999999998886
No 204
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=40.64 E-value=2.9e+02 Score=25.22 Aligned_cols=70 Identities=20% Similarity=0.302 Sum_probs=43.2
Q ss_pred EEEeCCCchHHHHHHHHhhcccccccCccccccc-------------cChhhHHHHHHHHhCCCceEEEecCCHHHHHHH
Q psy11337 61 VIVITTQLIPALSKIMLFGLSGIFDVENIYSSTK-------------IGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAA 127 (155)
Q Consensus 61 VLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k-------------~GKescFerI~~RFG~k~~yvvIGDG~eEe~aA 127 (155)
.+++....+-+++|.|. .||-.+.. +++.++ ++-.+-+|.... + .=++||++ -|...|
T Consensus 315 ai~~~~~~~~~la~~L~-elG~~v~~--~~~~~~~~~~~~~~~~~i~~~D~~~le~~~~----~-~dliig~s-~~~~~a 385 (455)
T PRK14476 315 AIAAEPDLLLALGSFLA-EMGAEIVA--AVTTTKSPALEDLPAEEVLIGDLEDLEELAE----G-ADLLITNS-HGRQAA 385 (455)
T ss_pred EEEeCHHHHHHHHHHHH-HCCCEEEE--EEeCCCcHHHHhCCcCcEEeCCHHHHHHhcc----C-CCEEEECc-hhHHHH
Confidence 45556678889999998 88865544 222211 122223333221 2 33677877 457789
Q ss_pred HHcCCceeEecc
Q psy11337 128 KQRNFPFWRISS 139 (155)
Q Consensus 128 k~~~~PFwrI~~ 139 (155)
++++.||.+++.
T Consensus 386 ~~~gip~~~~g~ 397 (455)
T PRK14476 386 ERLGIPLLRVGF 397 (455)
T ss_pred HHcCCCEEEecC
Confidence 999999998764
No 205
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=40.41 E-value=79 Score=24.59 Aligned_cols=41 Identities=10% Similarity=0.267 Sum_probs=33.2
Q ss_pred ccChhhHHHHHHHHhCC-CceEEEecCCHHHHHHHHHcCCce
Q psy11337 94 KIGKDSCFERIVTRFGR-KCTYVVIGDGQDEEAAAKQRNFPF 134 (155)
Q Consensus 94 k~GKescFerI~~RFG~-k~~yvvIGDG~eEe~aAk~~~~PF 134 (155)
.+.|..-.+++.+++|. .-.-++|||+.--.+.-+..+.++
T Consensus 177 ~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~v 218 (221)
T TIGR02463 177 SSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAV 218 (221)
T ss_pred CCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceE
Confidence 45699999999999984 456889999988877777776655
No 206
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=40.32 E-value=2.7e+02 Score=24.74 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=56.2
Q ss_pred CChhhHHHHHHHHHHh-------HHhhhHHHHHHHHHHhhhhcCCCceEEE-EeCCCchHHHHHHHHhhcccccccCccc
Q psy11337 19 LGPAKREEWLQLRAEI-------ESVTDNWLSLAIKCLTLINQRPSCTNVI-VITTQLIPALSKIMLFGLSGIFDVENIY 90 (155)
Q Consensus 19 l~~~~r~~w~~lr~e~-------e~~Td~WLs~A~k~L~~i~~r~~~vNVL-VTt~qLVpaLaK~LLygL~~~fpieNIY 90 (155)
+|...-+.|++--+++ |.+-......+++.|+....+-....|. .+....+-+++|.|.-.||--+-. +.
T Consensus 242 ~G~~~t~~~l~~la~~~g~~~~~e~~i~~~~~~~r~~l~~~~~~l~Gk~vai~~~~~~~~~la~~l~~elG~~v~~--i~ 319 (415)
T cd01977 242 FGFEYCAESLRKIGAFFGIEDRAEAVIAEEMAKWKPELDWYKERLKGKKVCIWTGGPKLWHWTKVIEDELGMQVVA--MS 319 (415)
T ss_pred CCHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHHHhcCCEEEE--EE
Confidence 5655555555332221 2223334444455454443443444443 456778899999887445543211 22
Q ss_pred cccccChhhHHHHHHHHhCC--------------------CceEEEecCCHHHHHHHHHcCCceeEecc
Q psy11337 91 SSTKIGKDSCFERIVTRFGR--------------------KCTYVVIGDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 91 Sa~k~GKescFerI~~RFG~--------------------k~~yvvIGDG~eEe~aAk~~~~PFwrI~~ 139 (155)
+.+ ++..=|+...++... +... +||... |...|++++.||.++..
T Consensus 320 ~~~--~~~~~~~~~~~~~~~~~~~v~d~~~~e~~~~~~~~~pdl-iig~s~-~~~~a~~lgip~~~~~~ 384 (415)
T cd01977 320 SKF--GHQEDFEKVIARGGEGTIYIDDPNELEFFEILEMLKPDI-ILTGPR-VGELVKKLHVPYVNIHA 384 (415)
T ss_pred EEe--ccHHHHHHHHHhcCCceEEEeCCCHHHHHHHHHhcCCCE-EEecCc-cchhhhhcCCCEEeccC
Confidence 211 112223333333321 1222 444443 33688889999999843
No 207
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=40.11 E-value=50 Score=23.47 Aligned_cols=47 Identities=28% Similarity=0.381 Sum_probs=33.4
Q ss_pred HHHh-CCCceEEEecCCHHHH--HHHHHcCCceeEecccccHHHHHHHhhcC
Q psy11337 105 VTRF-GRKCTYVVIGDGQDEE--AAAKQRNFPFWRISSRSDLAALYHALDNG 153 (155)
Q Consensus 105 ~~RF-G~k~~yvvIGDG~eEe--~aAk~~~~PFwrI~~~~Dl~~L~~al~~~ 153 (155)
...| -..+..||||=|..|. +=++..+|||= |-+.|+ .+||.||.+.
T Consensus 6 ~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p~~-ly~D~~-~~lY~~lg~~ 55 (115)
T PF13911_consen 6 KPELEAAGVKLVVIGCGSPEGIEKFCELTGFPFP-LYVDPE-RKLYKALGLK 55 (115)
T ss_pred HHHHHHcCCeEEEEEcCCHHHHHHHHhccCCCCc-EEEeCc-HHHHHHhCCc
Confidence 4455 3668888888775533 22345788888 888886 8899998775
No 208
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=39.77 E-value=24 Score=26.92 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=34.1
Q ss_pred cccCccccccccChhhHHHHHHHHhCCCceEEEec-----CCHHHH------HHHHH----cCCceeEeccc
Q psy11337 84 FDVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIG-----DGQDEE------AAAKQ----RNFPFWRISSR 140 (155)
Q Consensus 84 fpieNIYSa~k~GKescFerI~~RFG~k~~yvvIG-----DG~eEe------~aAk~----~~~PFwrI~~~ 140 (155)
.|++.+.......-..-++.|.+.++ +.-+||| ||.+-+ .-|++ .+.|+.-++-+
T Consensus 23 ~pl~~i~~~~~~~~~~~l~~~i~~~~--~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DEr 92 (130)
T TIGR00250 23 QGIPTIKAQDGEPDWSRIEELLKEWT--PDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRFGVPVVLWDER 92 (130)
T ss_pred eceEEEEecCCcHHHHHHHHHHHHcC--CCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 45665555332223455666667776 5779999 998777 33333 37888877653
No 209
>KOG0767|consensus
Probab=39.17 E-value=14 Score=33.30 Aligned_cols=34 Identities=35% Similarity=0.487 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHhCCCceEE-EecCCHHHHHHHHHcCCcee
Q psy11337 97 KDSCFERIVTRFGRKCTYV-VIGDGQDEEAAAKQRNFPFW 135 (155)
Q Consensus 97 KescFerI~~RFG~k~~yv-vIGDG~eEe~aAk~~~~PFw 135 (155)
|-.||||++|-. |- ||+--++|+..+.|+..-|.
T Consensus 207 KFa~FEr~vE~l-----Y~~vvpkpk~ecsk~eql~Vtf~ 241 (333)
T KOG0767|consen 207 KFACFERTVELL-----YKYVVPKPKAECSKAEQLGVTFA 241 (333)
T ss_pred HHHHHHHHHHHH-----HHHhcCCchHHcChHhhhhhhhH
Confidence 789999999986 33 67778899999999998875
No 210
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=38.93 E-value=43 Score=26.32 Aligned_cols=56 Identities=18% Similarity=0.378 Sum_probs=35.3
Q ss_pred ccccCccccccccChhhHHHHHHHHhCCCceEEEecCCHH----------H-HHHHHHcCCceeEecccc
Q psy11337 83 IFDVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQD----------E-EAAAKQRNFPFWRISSRS 141 (155)
Q Consensus 83 ~fpieNIYSa~k~GKescFerI~~RFG~k~~yvvIGDG~e----------E-e~aAk~~~~PFwrI~~~~ 141 (155)
+|++.|-.|-..+ + .-++.|.+ +.+++.+++||.-.| | ++-|+.+++||..+|+..
T Consensus 85 VfD~t~~~Sf~~~-~-~w~~~i~~-~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~ 151 (189)
T cd04121 85 VYDITNRWSFDGI-D-RWIKEIDE-HAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLC 151 (189)
T ss_pred EEECcCHHHHHHH-H-HHHHHHHH-hCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCC
Confidence 3444444444444 1 34555644 457899999993322 2 345788999999999743
No 211
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=38.90 E-value=65 Score=25.95 Aligned_cols=49 Identities=8% Similarity=0.075 Sum_probs=41.1
Q ss_pred cccChhhHHHHHHHHhC-C--CceEEEecCCHHHHHHHHHcCCceeEecccc
Q psy11337 93 TKIGKDSCFERIVTRFG-R--KCTYVVIGDGQDEEAAAKQRNFPFWRISSRS 141 (155)
Q Consensus 93 ~k~GKescFerI~~RFG-~--k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~ 141 (155)
..+.|..-.+++.+++| . .-..++|||+.--.+..+..+.++--=+.++
T Consensus 173 ~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam~Na~~ 224 (256)
T TIGR01486 173 AGSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPGPNG 224 (256)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCEEEEeCCCCC
Confidence 34679999999999998 4 5678999999999999999999987666653
No 212
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed
Probab=38.42 E-value=42 Score=27.72 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=27.4
Q ss_pred hCCCceEEEecCCHHHHHHHHHcCCceeEecccccHHHHHH
Q psy11337 108 FGRKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAALYH 148 (155)
Q Consensus 108 FG~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L~~ 148 (155)
+|+.++=||++|| +.++.||+.|.++ +-...++..++.
T Consensus 55 ~~k~~~V~vf~~~-~~~~~Ak~aGa~~--v~~~e~L~~i~~ 92 (215)
T PRK04203 55 RGKEVKIAVIAKG-ELALQAKEAGADY--VITREELEELGG 92 (215)
T ss_pred CCCCcEEEEEcCh-HhHHHHHHcCCCE--EeCHHHHHHHhc
Confidence 3567889999999 4567789999886 445556666543
No 213
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=38.38 E-value=12 Score=30.21 Aligned_cols=18 Identities=44% Similarity=1.069 Sum_probs=14.6
Q ss_pred cccChhhHHHHHHHHhCCCc
Q psy11337 93 TKIGKDSCFERIVTRFGRKC 112 (155)
Q Consensus 93 ~k~GKescFerI~~RFG~k~ 112 (155)
..||+| ||+|+.+||+.+
T Consensus 6 ~~Ig~E--fE~lId~~G~e~ 23 (158)
T PF09744_consen 6 SSIGKE--FERLIDRYGEEA 23 (158)
T ss_pred HHHHHH--HHHHHHHhChhH
Confidence 447866 999999999763
No 214
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=38.31 E-value=1.4e+02 Score=23.94 Aligned_cols=75 Identities=20% Similarity=0.030 Sum_probs=41.6
Q ss_pred HHHHHHhhhhcCCCceEEEEeCCCchHHH-HHHHHhhccccc-ccCccccccccChhhHHHHHHHHhCC-CceEEEecCC
Q psy11337 44 LAIKCLTLINQRPSCTNVIVITTQLIPAL-SKIMLFGLSGIF-DVENIYSSTKIGKDSCFERIVTRFGR-KCTYVVIGDG 120 (155)
Q Consensus 44 ~A~k~L~~i~~r~~~vNVLVTt~qLVpaL-aK~LLygL~~~f-pieNIYSa~k~GKescFerI~~RFG~-k~~yvvIGDG 120 (155)
-|..+|+.+.++ +.-=++||+..=-++- ++ .|=.+|--. ..+.|+++..... ..+.++.+++|. .-.-++|||+
T Consensus 28 ga~e~L~~L~~~-G~~~~ivTN~~~~~~~~~~-~L~~~gl~~~~~~~Ii~s~~~~~-~~l~~~~~~~~~~~~~~~~vGd~ 104 (242)
T TIGR01459 28 GAVQNLNKIIAQ-GKPVYFVSNSPRNIFSLHK-TLKSLGINADLPEMIISSGEIAV-QMILESKKRFDIRNGIIYLLGHL 104 (242)
T ss_pred cHHHHHHHHHHC-CCEEEEEeCCCCChHHHHH-HHHHCCCCccccceEEccHHHHH-HHHHhhhhhccCCCceEEEeCCc
Confidence 345555555544 3334566766544332 22 234444333 4578888876554 467777777763 3445667875
Q ss_pred H
Q psy11337 121 Q 121 (155)
Q Consensus 121 ~ 121 (155)
.
T Consensus 105 ~ 105 (242)
T TIGR01459 105 E 105 (242)
T ss_pred c
Confidence 3
No 215
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=38.28 E-value=1.9e+02 Score=22.56 Aligned_cols=84 Identities=14% Similarity=0.064 Sum_probs=47.4
Q ss_pred HHHHHHHHhHHhhhHHHHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHH
Q psy11337 26 EWLQLRAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIV 105 (155)
Q Consensus 26 ~w~~lr~e~e~~Td~WLs~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~ 105 (155)
.+...+..++....+-+..+..++..+..+... .++++|+.-. . .-++--+.|+++|.+-++--+.+.
T Consensus 95 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~isS~~~----------~-~~~~~~~~Y~~sK~~~~~~~~~l~ 162 (248)
T PRK10538 95 SVEDWETMIDTNNKGLVYMTRAVLPGMVERNHG-HIINIGSTAG----------S-WPYAGGNVYGATKAFVRQFSLNLR 162 (248)
T ss_pred CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEECCccc----------C-CCCCCCchhHHHHHHHHHHHHHHH
Confidence 334444445555555444455555555433322 3444333111 1 123445689999999888888888
Q ss_pred HHhC-CCceEEEecCCH
Q psy11337 106 TRFG-RKCTYVVIGDGQ 121 (155)
Q Consensus 106 ~RFG-~k~~yvvIGDG~ 121 (155)
..++ ++++..+|..|.
T Consensus 163 ~~~~~~~i~v~~v~pg~ 179 (248)
T PRK10538 163 TDLHGTAVRVTDIEPGL 179 (248)
T ss_pred HHhcCCCcEEEEEeCCe
Confidence 8775 457777776553
No 216
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=37.97 E-value=88 Score=27.39 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=35.4
Q ss_pred hhHHHHHHHHhCC----CceEEEecCCHHH---------HHHHHHcCCc----eeEecccccHHHHHHHhh
Q psy11337 98 DSCFERIVTRFGR----KCTYVVIGDGQDE---------EAAAKQRNFP----FWRISSRSDLAALYHALD 151 (155)
Q Consensus 98 escFerI~~RFG~----k~~yvvIGDG~eE---------e~aAk~~~~P----FwrI~~~~Dl~~L~~al~ 151 (155)
...|..+++++.. ++++++||+|.++ ++-+++++.. |..--++.++.+++...+
T Consensus 256 i~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~ad 326 (419)
T cd03806 256 LRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTAS 326 (419)
T ss_pred HHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCe
Confidence 5667888877743 7999999998531 1346677774 333234677777776654
No 217
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.91 E-value=1.8e+02 Score=22.22 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=40.0
Q ss_pred ccCccccccccChhhHHHHHHHHhCC-CceEEEecCCH----------H----HHHHHHHcCCceeEecccccHHH
Q psy11337 85 DVENIYSSTKIGKDSCFERIVTRFGR-KCTYVVIGDGQ----------D----EEAAAKQRNFPFWRISSRSDLAA 145 (155)
Q Consensus 85 pieNIYSa~k~GKescFerI~~RFG~-k~~yvvIGDG~----------e----Ee~aAk~~~~PFwrI~~~~Dl~~ 145 (155)
|-...|+++|.+-++-++.+.++|++ ++++++|--|. + +....-..+.|..+.....|+..
T Consensus 149 ~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~ 224 (251)
T PRK07231 149 PGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLATIPLGRLGTPEDIAN 224 (251)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhcCCCCCCCcCHHHHHH
Confidence 44667999999989999999999965 77777766440 1 11112234567777666666543
No 218
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=37.77 E-value=67 Score=29.59 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=44.8
Q ss_pred EEEeCCCchHHHHHHHHhhcccccccCccccccccC------hhhH--------HHHHHHHhCCCceEEEecCCHHHHHH
Q psy11337 61 VIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIG------KDSC--------FERIVTRFGRKCTYVVIGDGQDEEAA 126 (155)
Q Consensus 61 VLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~G------Kesc--------FerI~~RFG~k~~yvvIGDG~eEe~a 126 (155)
+++.....+-+++|.|.=.||--+-.-..|+....- |+.| ++.|.++.-+.--=++||+. -|...
T Consensus 299 ~I~gd~~~a~~l~~~L~~ElG~~vv~~gt~~~~~~~~~~~~~~~~~~~~~i~dD~~ei~~~i~~~~pdliiG~~-~er~~ 377 (511)
T TIGR01278 299 FVFGDATHAVGMTKILARELGIHIVGAGTYCKYDADWVREQVAGYVDEVLITDDFQEVADAIAALEPELVLGTQ-MERHS 377 (511)
T ss_pred EEEcCcHHHHHHHHHHHHhCCCEEEecCCchhhhHHHHHHHHHhcCCCeEEeCCHHHHHHHHHhcCCCEEEECh-HHHHH
Confidence 556667799999999985555433222223320000 0000 23333333222233677777 77788
Q ss_pred HHHcCCceeEecc
Q psy11337 127 AKQRNFPFWRISS 139 (155)
Q Consensus 127 Ak~~~~PFwrI~~ 139 (155)
|++++.||.+|+.
T Consensus 378 a~~lgip~~~i~~ 390 (511)
T TIGR01278 378 AKRLDIPCGVISA 390 (511)
T ss_pred HHHcCCCEEEecC
Confidence 9999999999986
No 219
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=37.62 E-value=2.4e+02 Score=24.48 Aligned_cols=81 Identities=25% Similarity=0.245 Sum_probs=50.5
Q ss_pred ceEEEEeCCCchHH----HHHHHHhhcccccccCc-ccc--ccccCh-----hhHHHHHHHHhCCCceEEEecCCHH---
Q psy11337 58 CTNVIVITTQLIPA----LSKIMLFGLSGIFDVEN-IYS--STKIGK-----DSCFERIVTRFGRKCTYVVIGDGQD--- 122 (155)
Q Consensus 58 ~vNVLVTt~qLVpa----LaK~LLygL~~~fpieN-IYS--a~k~GK-----escFerI~~RFG~k~~yvvIGDG~e--- 122 (155)
.+-+++|..|+-+. +......|++-...++- +-+ ..-.++ ..-|+++.+++.|++ -+|-||+-+
T Consensus 30 ~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~-vlv~GD~~~~la 108 (365)
T TIGR03568 30 ELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSMGLTIIGFSDAFERLKPDL-VVVLGDRFEMLA 108 (365)
T ss_pred cEEEEEeCCCCChhhccHHHHHHHcCCCCCCccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCCCE-EEEeCCchHHHH
Confidence 45667777788775 56666565543222211 111 111122 367888999998875 456788853
Q ss_pred HHHHHHHcCCceeEecc
Q psy11337 123 EEAAAKQRNFPFWRISS 139 (155)
Q Consensus 123 Ee~aAk~~~~PFwrI~~ 139 (155)
-..||..+++|...|..
T Consensus 109 ~alaA~~~~IPv~Hvea 125 (365)
T TIGR03568 109 AAIAAALLNIPIAHIHG 125 (365)
T ss_pred HHHHHHHhCCcEEEEEC
Confidence 35689999999998765
No 220
>PRK05765 precorrin-3B C17-methyltransferase; Provisional
Probab=37.59 E-value=73 Score=26.34 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=31.3
Q ss_pred HHHHHHh--CCCceEEEecCC------HHHHHHHHHcCCceeEecccccHHHHHHH
Q psy11337 102 ERIVTRF--GRKCTYVVIGDG------QDEEAAAKQRNFPFWRISSRSDLAALYHA 149 (155)
Q Consensus 102 erI~~RF--G~k~~yvvIGDG------~eEe~aAk~~~~PFwrI~~~~Dl~~L~~a 149 (155)
+.+.++. |+++.+++.||- .++.++.++.+++ +.+...|..-++-.|
T Consensus 63 ~~~i~~~~~g~~Vv~l~~GDP~i~~~~~~~~~~l~~~~~~-~~veviPGiSs~~aa 117 (246)
T PRK05765 63 NTAIEKALEGNIVALVSSGDPQVYGMAGLVFELISRRKLD-VDVEVIPGVTAALAA 117 (246)
T ss_pred HHHHHHHHCCCcEEEEeCCCchhhhhHHHHHHHHHhcCCC-CCEEEeCCHHHHHHH
Confidence 4565554 999999999995 3556677777776 455556665555444
No 221
>PTZ00175 diphthine synthase; Provisional
Probab=37.57 E-value=1.2e+02 Score=26.00 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=34.7
Q ss_pred ChhhHHHHHHHHh-CCCceEEEecCC------HHHHHHHHHcCCceeEec
Q psy11337 96 GKDSCFERIVTRF-GRKCTYVVIGDG------QDEEAAAKQRNFPFWRIS 138 (155)
Q Consensus 96 GKescFerI~~RF-G~k~~yvvIGDG------~eEe~aAk~~~~PFwrI~ 138 (155)
..++.-+.|.++. |+++.|++.||- .++...|++.|+|+--|-
T Consensus 62 ~~e~~~~~ii~~a~~~~Vv~L~~GDP~i~~t~~~l~~~~~~~gi~vevIP 111 (270)
T PTZ00175 62 MVEEGCDEILEEAKEKNVAFLVVGDPFCATTHTDLYLRAKKKGIEVEVIH 111 (270)
T ss_pred CHHHHHHHHHHHhCCCCEEEEECCCCCccCCHHHHHHHHHHCCCcEEEEC
Confidence 3455556677766 899999999994 789999999999987775
No 222
>CHL00129 rpl1 ribosomal protein L1; Reviewed
Probab=37.35 E-value=42 Score=28.33 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=21.5
Q ss_pred hCCCceEEEecCCHHHHHHHHHcCCcee
Q psy11337 108 FGRKCTYVVIGDGQDEEAAAKQRNFPFW 135 (155)
Q Consensus 108 FG~k~~yvvIGDG~eEe~aAk~~~~PFw 135 (155)
+|++.+=||++||. .++.|+..|-+++
T Consensus 68 ~gk~~kV~Vfa~~~-~~~eAk~aGad~v 94 (229)
T CHL00129 68 TGKTIRIAVLTNEE-KITEAKNAGADIV 94 (229)
T ss_pred CCCCcEEEEECChH-hHHHHHHcCCCEe
Confidence 57889999999994 5556788888754
No 223
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=37.33 E-value=1.2e+02 Score=24.80 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCceEEEecCCHHHHH---HHHHcCCce-eEe-cccccHHHHHHHhhc
Q psy11337 100 CFERIVTRFGRKCTYVVIGDGQDEEA---AAKQRNFPF-WRI-SSRSDLAALYHALDN 152 (155)
Q Consensus 100 cFerI~~RFG~k~~yvvIGDG~eEe~---aAk~~~~PF-wrI-~~~~Dl~~L~~al~~ 152 (155)
.|.++.++ +++++++++|+|.++.. ..++++.+- +.+ ...+|+.+++...+.
T Consensus 225 a~~~l~~~-~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~ 281 (372)
T cd04949 225 AFAKVVKQ-VPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQL 281 (372)
T ss_pred HHHHHHHh-CCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhE
Confidence 34444443 57899999999977643 234455542 222 246788888776543
No 224
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=37.23 E-value=49 Score=27.35 Aligned_cols=45 Identities=22% Similarity=0.306 Sum_probs=32.2
Q ss_pred ChhhHHHHHHHHh--CC-C-ceEEEecCCHH--HHHHHHHcCCceeEeccc
Q psy11337 96 GKDSCFERIVTRF--GR-K-CTYVVIGDGQD--EEAAAKQRNFPFWRISSR 140 (155)
Q Consensus 96 GKescFerI~~RF--G~-k-~~yvvIGDG~e--Ee~aAk~~~~PFwrI~~~ 140 (155)
|.-+||+-|...+ |. + -.-+||+|.++ -.+-|+++|+|+..++..
T Consensus 8 g~Gsn~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~~ 58 (207)
T PLN02331 8 GGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPKT 58 (207)
T ss_pred CCChhHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEeccc
Confidence 4559999999988 43 2 44567777543 346789999999887653
No 225
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.05 E-value=86 Score=27.72 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=22.1
Q ss_pred HHHHHHhhhhcC-C---CceEEEEeCCCchHHHHHHH
Q psy11337 44 LAIKCLTLINQR-P---SCTNVIVITTQLIPALSKIM 76 (155)
Q Consensus 44 ~A~k~L~~i~~r-~---~~vNVLVTt~qLVpaLaK~L 76 (155)
.+.++++.+... . ...++-|+|..++|.+.|+.
T Consensus 166 ~v~~~l~~l~~~~gi~~~~r~itvsTsG~~p~i~~l~ 202 (342)
T PRK14454 166 NVMKFLKIVNSPYGLNIGQRHITLSTCGIVPKIYELA 202 (342)
T ss_pred HHHHHHHHHhcccccCcCCCceEEECcCChhHHHHHH
Confidence 445666666542 1 12388999999999877764
No 226
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=37.01 E-value=1.1e+02 Score=28.01 Aligned_cols=52 Identities=10% Similarity=0.309 Sum_probs=33.3
Q ss_pred hHHHHHHHHhCCCceEEEecCCHHHHH---HHHHcCC-ceeEecccccHHHHHHHhh
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQDEEA---AAKQRNF-PFWRISSRSDLAALYHALD 151 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~eEe~---aAk~~~~-PFwrI~~~~Dl~~L~~al~ 151 (155)
..|.++.++ +++++++++|+|.++++ .++.++. ..+..--+.|+..++.+.+
T Consensus 339 ~A~~~l~~~-~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~~~~~~~~~ad 394 (500)
T TIGR02918 339 KAVVKAKKS-VPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHRNLSEVYKDYE 394 (500)
T ss_pred HHHHHHHhh-CCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCCCHHHHHHhCC
Confidence 445555544 47899999999987543 3455544 3445444667877776654
No 227
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=36.98 E-value=71 Score=24.79 Aligned_cols=39 Identities=28% Similarity=0.427 Sum_probs=31.3
Q ss_pred CceEEEecCCHHHHHHHHHcCCceeEecccccHHHHHHHhh
Q psy11337 111 KCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAALYHALD 151 (155)
Q Consensus 111 k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L~~al~ 151 (155)
++.+++||. ...++++++|+.-..+...++...|..++.
T Consensus 207 ~~~~~aiG~--~Ta~~l~~~G~~~~~~~~~~~~~~l~~~l~ 245 (249)
T PRK05928 207 SCKAVVIGE--RTAEALRELGIKVIIVPDSADNEALLRALK 245 (249)
T ss_pred CCeEEEeCH--HHHHHHHHcCCCcceecCCCChHHHHHHHH
Confidence 688888865 477888999987777788888888887765
No 228
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=36.91 E-value=66 Score=24.95 Aligned_cols=43 Identities=16% Similarity=0.327 Sum_probs=25.6
Q ss_pred CCceEEEecCCHHHHHHHHHc-CCceeEec---ccccHHHHHHHhhc
Q psy11337 110 RKCTYVVIGDGQDEEAAAKQR-NFPFWRIS---SRSDLAALYHALDN 152 (155)
Q Consensus 110 ~k~~yvvIGDG~eEe~aAk~~-~~PFwrI~---~~~Dl~~L~~al~~ 152 (155)
+++.++++|+|.++....+.. .-+.+++- ...++..++.+.+.
T Consensus 219 ~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~ 265 (359)
T cd03823 219 GDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDV 265 (359)
T ss_pred cCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCE
Confidence 689999999998776554331 11222222 24667777666543
No 229
>PRK06181 short chain dehydrogenase; Provisional
Probab=36.89 E-value=1.6e+02 Score=23.00 Aligned_cols=82 Identities=10% Similarity=0.045 Sum_probs=50.5
Q ss_pred HHHHHHHhHHhhhHHHHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHH
Q psy11337 27 WLQLRAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVT 106 (155)
Q Consensus 27 w~~lr~e~e~~Td~WLs~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~ 106 (155)
+.++...++.-..+.+..+..++.....+. ..-|+++|.+-+. -.|-...|+++|.+-++.++....
T Consensus 100 ~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~iv~~sS~~~~~------------~~~~~~~Y~~sK~~~~~~~~~l~~ 166 (263)
T PRK06181 100 LSVFERVMRVNYLGAVYCTHAALPHLKASR-GQIVVVSSLAGLT------------GVPTRSGYAASKHALHGFFDSLRI 166 (263)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CEEEEEecccccC------------CCCCccHHHHHHHHHHHHHHHHHH
Confidence 344445555555666666666655544332 3335555544321 123346799999999999999888
Q ss_pred HhC-CCceEEEecCCH
Q psy11337 107 RFG-RKCTYVVIGDGQ 121 (155)
Q Consensus 107 RFG-~k~~yvvIGDG~ 121 (155)
.++ ..+++++|.-|.
T Consensus 167 ~~~~~~i~~~~i~pg~ 182 (263)
T PRK06181 167 ELADDGVAVTVVCPGF 182 (263)
T ss_pred HhhhcCceEEEEecCc
Confidence 885 457887777663
No 230
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=36.62 E-value=1.1e+02 Score=22.03 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=33.2
Q ss_pred hHHHHHHHHhCCCceEEEecCCHHH---HHHHHHcCCc--eeEeccc--ccHHHHHHHhh
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQDE---EAAAKQRNFP--FWRISSR--SDLAALYHALD 151 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~eE---e~aAk~~~~P--FwrI~~~--~Dl~~L~~al~ 151 (155)
.+|+++.++.++++.++++|++..+ ...++..+.+ +--+... .|+.+++...+
T Consensus 35 ~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~d 94 (172)
T PF00534_consen 35 EAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELYKSSD 94 (172)
T ss_dssp HHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHHTS
T ss_pred HHHHHHHhhcCCCeEEEEEcccccccccccccccccccccccccccccccccccccccce
Confidence 5677777777899999999976543 3345555653 2223333 37777776644
No 231
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=36.46 E-value=1.1e+02 Score=28.62 Aligned_cols=64 Identities=23% Similarity=0.336 Sum_probs=48.9
Q ss_pred EEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHHhCCCceEEEecCCHHH-----------HHHHHH
Q psy11337 61 VIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQDE-----------EAAAKQ 129 (155)
Q Consensus 61 VLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RFG~k~~yvvIGDG~eE-----------e~aAk~ 129 (155)
++|+|+- +-++...|.|.|. +---..+.|....-|.++.|+...|-.|- ++.|+.
T Consensus 25 ~~~~~g~-----------~psG~~HiG~~~e---~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~ 90 (510)
T PRK00750 25 VVVETGI-----------GPSGLPHIGNFRE---VARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEY 90 (510)
T ss_pred EEEEeCC-----------CCCCCcccccccc---hhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHh
Confidence 7888773 4578889999985 33345666666666999999999999873 469999
Q ss_pred cCCceeEec
Q psy11337 130 RNFPFWRIS 138 (155)
Q Consensus 130 ~~~PFwrI~ 138 (155)
+|+|.=+|-
T Consensus 91 ~G~pl~~~p 99 (510)
T PRK00750 91 LGKPLTEIP 99 (510)
T ss_pred cCcccccCC
Confidence 999977763
No 232
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=35.78 E-value=98 Score=24.39 Aligned_cols=95 Identities=21% Similarity=0.212 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHhh-h---hcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHHhCC-Cce
Q psy11337 39 DNWLSLAIKCLTL-I---NQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFGR-KCT 113 (155)
Q Consensus 39 d~WLs~A~k~L~~-i---~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RFG~-k~~ 113 (155)
+..|..|+.-|-. + .+...+-=++|=-++-+|.-.. .-..+=.++=|||....-=-+..|++..+.++ .-.
T Consensus 21 ~~~l~~aR~~Li~~L~~y~~~~~~~v~VVFDa~~~~~~~~----~~~~~~gi~Vvft~~~~tAD~~Ie~~v~~~~~~~~~ 96 (166)
T PF05991_consen 21 RGDLEAARERLIEMLSEYAQFSGYEVIVVFDAYKVPGGSE----EREEYGGIEVVFTKEGETADDYIERLVRELKNRPRQ 96 (166)
T ss_pred cCCHHHHHHHHHHHHHHHhcccCCEEEEEEeCCcCCCCCc----eeeeeCceEEEECCCCCCHHHHHHHHHHHhccCCCe
Confidence 4567788644433 2 3445566667766665554210 00011245667887766678999999999975 455
Q ss_pred EEEecCCHHHHHHHHHcCCceeEecc
Q psy11337 114 YVVIGDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 114 yvvIGDG~eEe~aAk~~~~PFwrI~~ 139 (155)
-+||.+-.++..+|+..|- -+|++
T Consensus 97 v~VVTSD~~iq~~~~~~GA--~~iss 120 (166)
T PF05991_consen 97 VTVVTSDREIQRAARGRGA--KRISS 120 (166)
T ss_pred EEEEeCCHHHHHHHhhCCC--EEEcH
Confidence 5555555588989887664 45555
No 233
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=35.61 E-value=89 Score=25.57 Aligned_cols=49 Identities=6% Similarity=0.125 Sum_probs=43.5
Q ss_pred ChhhHHHHHHHHhC-CC-ceEEEecCCHHHHHHHHHcCCceeEecccccHH
Q psy11337 96 GKDSCFERIVTRFG-RK-CTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLA 144 (155)
Q Consensus 96 GKescFerI~~RFG-~k-~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~ 144 (155)
.|..-.+++.+++| .. ..=++|||+.--.+.++..++++--=+.++++.
T Consensus 190 ~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~m~~~ag~~vam~NA~~~~k 240 (273)
T PRK00192 190 DKGKAVRWLKELYRRQDGVETIALGDSPNDLPMLEAADIAVVVPGPDGPNP 240 (273)
T ss_pred CHHHHHHHHHHHHhccCCceEEEEcCChhhHHHHHhCCeeEEeCCCCCCCc
Confidence 79999999999998 55 677899999999999999999998888888776
No 234
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.37 E-value=1.8e+02 Score=22.30 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=30.3
Q ss_pred cccCccccccccChhhHHHHHHHHhCCCceEEEecCC
Q psy11337 84 FDVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDG 120 (155)
Q Consensus 84 fpieNIYSa~k~GKescFerI~~RFG~k~~yvvIGDG 120 (155)
+|-...|+++|.+=++-.+.+...++++.+..+|..|
T Consensus 148 ~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg 184 (252)
T PRK06077 148 AYGLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPG 184 (252)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeC
Confidence 4456789999999888888888888888888888775
No 235
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=35.37 E-value=1.9e+02 Score=26.53 Aligned_cols=52 Identities=31% Similarity=0.485 Sum_probs=38.0
Q ss_pred ccccCccccccccChhhHHHHHHHHhCCCceEEEecCCHHHHHHHHHcCCceeEec
Q psy11337 83 IFDVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAAKQRNFPFWRIS 138 (155)
Q Consensus 83 ~fpieNIYSa~k~GKescFerI~~RFG~k~~yvvIGDG~eEe~aAk~~~~PFwrI~ 138 (155)
++-..++|+.| ..-|+++.+|||=+++|+.=+|+.+.+++++..|--.+-+.
T Consensus 105 vl~~~~~YG~t----~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lE 156 (396)
T COG0626 105 VLLPDDLYGGT----YRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLE 156 (396)
T ss_pred EEecCCccchH----HHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEe
Confidence 34445568755 57899999999999999999999777777775444444443
No 236
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=35.26 E-value=1.4e+02 Score=24.49 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=28.9
Q ss_pred ChhhHHHHHHHHhC-CCceEEEecCCHHHHHHHHHcCCcee
Q psy11337 96 GKDSCFERIVTRFG-RKCTYVVIGDGQDEEAAAKQRNFPFW 135 (155)
Q Consensus 96 GKescFerI~~RFG-~k~~yvvIGDG~eEe~aAk~~~~PFw 135 (155)
.|.. +.++.++.| +-..|+++-+..+-..+++++++|++
T Consensus 98 dK~~-~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~~~P~i 137 (304)
T PRK01372 98 DKLR-TKLVWQAAGLPTPPWIVLTREEDLLAAIDKLGLPLV 137 (304)
T ss_pred CHHH-HHHHHHHCCCCCCCEEEEeCcchHHHHHhhcCCCEE
Confidence 4554 566788888 66778888887665778888999973
No 237
>KOG1111|consensus
Probab=35.16 E-value=58 Score=30.53 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=23.6
Q ss_pred CCCceEEEecCCH-----HHHHHHHHcCCceeEecc
Q psy11337 109 GRKCTYVVIGDGQ-----DEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 109 G~k~~yvvIGDG~-----eEe~aAk~~~~PFwrI~~ 139 (155)
-|+++|+++|||+ ||-.---.++.|..-+.+
T Consensus 224 ~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~ 259 (426)
T KOG1111|consen 224 HPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGT 259 (426)
T ss_pred CCCeeEEEecCCcccchHHHHHHHhhccCceEEecc
Confidence 3899999999998 444445567888777776
No 238
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=34.83 E-value=1.1e+02 Score=27.73 Aligned_cols=56 Identities=29% Similarity=0.456 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHhC---CCceEEEe-----cCCHHHHH---HHHH-----------cCC-ceeEec---ccccHHHHHHHh
Q psy11337 97 KDSCFERIVTRFG---RKCTYVVI-----GDGQDEEA---AAKQ-----------RNF-PFWRIS---SRSDLAALYHAL 150 (155)
Q Consensus 97 KescFerI~~RFG---~k~~yvvI-----GDG~eEe~---aAk~-----------~~~-PFwrI~---~~~Dl~~L~~al 150 (155)
+...|+++.+++- .|++++.| |||.+..+ -+++ .+| |+..+. .+.|+.+++.+.
T Consensus 277 ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aa 356 (456)
T TIGR02400 277 RLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAA 356 (456)
T ss_pred HHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhC
Confidence 7899999988862 47889988 56655422 1111 123 555544 478899999988
Q ss_pred hc
Q psy11337 151 DN 152 (155)
Q Consensus 151 ~~ 152 (155)
|.
T Consensus 357 Dv 358 (456)
T TIGR02400 357 DV 358 (456)
T ss_pred cE
Confidence 74
No 239
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=34.79 E-value=56 Score=28.45 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=48.8
Q ss_pred HHHHhhhh-cC-CCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHHhCCC---ce-EEEecC
Q psy11337 46 IKCLTLIN-QR-PSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFGRK---CT-YVVIGD 119 (155)
Q Consensus 46 ~k~L~~i~-~r-~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RFG~k---~~-yvvIGD 119 (155)
......|. .. ++++=++||+ =|-.++-++ +...+-||-++||+.++..-+.--..+.+++|-. ++ |+|+|-
T Consensus 108 ~~i~~~i~~~~~~~~iiivvsN--PvD~~t~~~-~k~sg~~p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~Ge 184 (322)
T cd01338 108 TAQGKALNDVASRDVKVLVVGN--PCNTNALIA-MKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGN 184 (322)
T ss_pred HHHHHHHHhhCCCCeEEEEecC--cHHHHHHHH-HHHcCCCChHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeC
Confidence 34444453 33 4777555553 344444333 3555679999999999888888777888888844 66 577898
Q ss_pred CHH
Q psy11337 120 GQD 122 (155)
Q Consensus 120 G~e 122 (155)
..|
T Consensus 185 HG~ 187 (322)
T cd01338 185 HSP 187 (322)
T ss_pred Ccc
Confidence 755
No 240
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=34.78 E-value=30 Score=23.17 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=21.7
Q ss_pred hCCCceEEEecCCHHHHH-HHHHcCCceeEecc
Q psy11337 108 FGRKCTYVVIGDGQDEEA-AAKQRNFPFWRISS 139 (155)
Q Consensus 108 FG~k~~yvvIGDG~eEe~-aAk~~~~PFwrI~~ 139 (155)
+|++|+|.+.|+..||=- ++++|.--.+.+..
T Consensus 9 ~g~~C~~~~~a~tedEll~~~~~Ha~~~Hg~~~ 41 (57)
T PF06348_consen 9 VGPDCGFVIRAETEDELLEAVVEHAREVHGMTE 41 (57)
T ss_pred cCCCCCeEEeeCCHHHHHHHHHHHHHHhcCCcc
Confidence 489999999998866633 55555544444553
No 241
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=34.66 E-value=86 Score=29.22 Aligned_cols=41 Identities=7% Similarity=-0.041 Sum_probs=31.5
Q ss_pred hHHHHHHHHhCCCceEEE-------ecCCHHHH--HHHHHcCCceeEecc
Q psy11337 99 SCFERIVTRFGRKCTYVV-------IGDGQDEE--AAAKQRNFPFWRISS 139 (155)
Q Consensus 99 scFerI~~RFG~k~~yvv-------IGDG~eEe--~aAk~~~~PFwrI~~ 139 (155)
.+..+|++||-+++-||+ |||-.|-- ++.++++.|.+.+++
T Consensus 87 ~~i~ei~~~~~p~~ifv~~TC~t~iIGdDle~va~~~~~~~gipVV~v~~ 136 (457)
T CHL00073 87 RLCLQIKKDRNPSVIVWIGTCTTEIIKMDLEGMAPKLEAEIGIPIVVARA 136 (457)
T ss_pred HHHHHHHHhCCCCEEEEEccCcHHhhccCHHHHHHHHHHhhCCCEEEEeC
Confidence 566788999999988884 78876543 345577999999987
No 242
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=34.64 E-value=33 Score=27.71 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=32.3
Q ss_pred CCchHHHHHHHHh--hcccccccCccccccccChhhHHHHHHHHhCCCceEEEecC
Q psy11337 66 TQLIPALSKIMLF--GLSGIFDVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGD 119 (155)
Q Consensus 66 ~qLVpaLaK~LLy--gL~~~fpieNIYSa~k~GKescFerI~~RFG~k~~yvvIGD 119 (155)
++|+|+|.+.+-+ .=-.+|.|.+||...+.+...+-|. +.+.+++.|.
T Consensus 64 ~sLlp~LL~~l~~N~~~~~lFEiG~Vf~~~~~~~~~~~E~------~~l~~~~~g~ 113 (218)
T cd00496 64 THTSAVQARALAKLKPPIRIFSIGRVYRNDEIDATHLPEF------HQIEGLVVDK 113 (218)
T ss_pred ccCcHHHHHHHHhcCCCeeEEEEcCeEECCCCCCCcCCcc------EEEEEEEECC
Confidence 4899999999999 6668899999996543332111111 3455667775
No 243
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=34.33 E-value=99 Score=25.21 Aligned_cols=57 Identities=21% Similarity=0.266 Sum_probs=32.0
Q ss_pred cChhhHHHHHHHHh-CCCceEEEecCCHHHHHHHHHcC--CceeEecccccHHHHHHHhh
Q psy11337 95 IGKDSCFERIVTRF-GRKCTYVVIGDGQDEEAAAKQRN--FPFWRISSRSDLAALYHALD 151 (155)
Q Consensus 95 ~GKescFerI~~RF-G~k~~yvvIGDG~eEe~aAk~~~--~PFwrI~~~~Dl~~L~~al~ 151 (155)
.++..-.+.+.+-| .-+..+++||+|.++++..+... +-|.---+++++.+++.+.+
T Consensus 204 ~~~~K~~~~li~a~~~~~~~l~ivG~g~~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad 263 (351)
T cd03804 204 LVPYKRIDLAIEAFNKLGKRLVVIGDGPELDRLRAKAGPNVTFLGRVSDEELRDLYARAR 263 (351)
T ss_pred CccccChHHHHHHHHHCCCcEEEEECChhHHHHHhhcCCCEEEecCCCHHHHHHHHHhCC
Confidence 34444455555555 22389999999988766544222 22332223444777776554
No 244
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=34.30 E-value=89 Score=30.41 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=32.7
Q ss_pred HHHHHHHHhCCCceEEEecCCHHHH---HHHHHcCCc--eeEecccccHHHHHHHhhc
Q psy11337 100 CFERIVTRFGRKCTYVVIGDGQDEE---AAAKQRNFP--FWRISSRSDLAALYHALDN 152 (155)
Q Consensus 100 cFerI~~RFG~k~~yvvIGDG~eEe---~aAk~~~~P--FwrI~~~~Dl~~L~~al~~ 152 (155)
-|.++.+++ +++.|++||||.+++ +-++++++. +.-....+|+..++.+.+.
T Consensus 538 A~a~l~~~~-p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv 594 (694)
T PRK15179 538 AAQRFAASH-PKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNA 594 (694)
T ss_pred HHHHHHHHC-cCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCE
Confidence 344444443 579999999997654 345666643 2223446788888877654
No 245
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=34.23 E-value=74 Score=27.49 Aligned_cols=77 Identities=21% Similarity=0.346 Sum_probs=60.5
Q ss_pred ceEEEEeCCCchHHHHHHHHhhcccccccCccccc---cccCh---hhHHHHHHHHhC-CCceEEEecCCHHHHHHHHHc
Q psy11337 58 CTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSS---TKIGK---DSCFERIVTRFG-RKCTYVVIGDGQDEEAAAKQR 130 (155)
Q Consensus 58 ~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa---~k~GK---escFerI~~RFG-~k~~yvvIGDG~eEe~aAk~~ 130 (155)
.+.|-|=|..=|| |+=|+||-+..-++.|.+|- |++|| -+-+.+|...-| +-..-+.+.|-.+|-.||++.
T Consensus 119 g~~vyiYSSGSV~--AQkL~Fghs~agdL~~lfsGyfDttiG~KrE~~SY~kIa~~iGl~p~eilFLSDn~~EL~AA~~v 196 (229)
T COG4229 119 GMRVYIYSSGSVK--AQKLFFGHSDAGDLNSLFSGYFDTTIGKKRESQSYAKIAGDIGLPPAEILFLSDNPEELKAAAGV 196 (229)
T ss_pred CCcEEEEcCCCch--hHHHhhcccccccHHhhhcceeeccccccccchhHHHHHHhcCCCchheEEecCCHHHHHHHHhc
Confidence 4566666666677 57899999888888888774 57773 356999999999 557788899999999999999
Q ss_pred CCceeE
Q psy11337 131 NFPFWR 136 (155)
Q Consensus 131 ~~PFwr 136 (155)
+|--.-
T Consensus 197 Gl~t~l 202 (229)
T COG4229 197 GLATGL 202 (229)
T ss_pred chheee
Confidence 986543
No 246
>PTZ00029 60S ribosomal protein L10a; Provisional
Probab=34.12 E-value=55 Score=27.17 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=24.7
Q ss_pred CCCceEEEecCCHHHHHHHHHcCCceeEecccccHHHH
Q psy11337 109 GRKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAAL 146 (155)
Q Consensus 109 G~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L 146 (155)
|+..+=|||+|| |..+.|++.|.+++- -.||..+
T Consensus 59 gk~~~v~V~a~~-~~~~~Ak~aGa~vvg---~edL~~~ 92 (216)
T PTZ00029 59 KPNLKVCVLGDA-VHCDEAKKLGLDFMD---IEGLKKF 92 (216)
T ss_pred CCCcEEEEECCc-HHHHHHHHcCCCEec---HHHHHHh
Confidence 467889999999 456678999988643 4455543
No 247
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=34.11 E-value=1.6e+02 Score=20.36 Aligned_cols=51 Identities=24% Similarity=0.284 Sum_probs=35.6
Q ss_pred HHHHHHhCCCceEEEecCCH--HHHHHHHH----cCCceeEecc-----cccHHHHHHHhhc
Q psy11337 102 ERIVTRFGRKCTYVVIGDGQ--DEEAAAKQ----RNFPFWRISS-----RSDLAALYHALDN 152 (155)
Q Consensus 102 erI~~RFG~k~~yvvIGDG~--eEe~aAk~----~~~PFwrI~~-----~~Dl~~L~~al~~ 152 (155)
.+..+|.|....++.+.+.. +.++.+++ ..+|...|+- ..|+.+++....+
T Consensus 18 k~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~l 79 (80)
T COG0695 18 KRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKL 79 (80)
T ss_pred HHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhccC
Confidence 45667889999998888887 33344444 4689998876 2478888765543
No 248
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=33.98 E-value=83 Score=25.22 Aligned_cols=40 Identities=18% Similarity=0.108 Sum_probs=31.2
Q ss_pred CCceEEEecCCHHHHHHHHHcCCceeEecccccHHHHHHHhh
Q psy11337 110 RKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAALYHALD 151 (155)
Q Consensus 110 ~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L~~al~ 151 (155)
.++.+||||.. ..+++++.++.-..|...|+..+|..++.
T Consensus 199 ~~~~~v~Ig~~--ta~al~~~~~~~~~ia~~~t~~~l~~~l~ 238 (240)
T PRK09189 199 EKTRFLCLSAR--VAAALPASLRAQALIAAMPDEKSLLSLLS 238 (240)
T ss_pred cccCeEEeCHH--HHHHHhhccccceeecCCCCHHHHHHHhh
Confidence 57889999765 44467777776677888999999988875
No 249
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=33.98 E-value=72 Score=23.49 Aligned_cols=84 Identities=12% Similarity=0.054 Sum_probs=44.5
Q ss_pred ceEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHHhCCCceEEEecCCH-----HHHHHHHHcCC
Q psy11337 58 CTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQ-----DEEAAAKQRNF 132 (155)
Q Consensus 58 ~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RFG~k~~yvvIGDG~-----eEe~aAk~~~~ 132 (155)
..-|++.+++-.......+...-...+-+...+++...|=-...-. .-....+.+++++|||. +|-..|.+++.
T Consensus 13 ~~~i~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~~a~Ga-a~a~~~~~vv~~~GDG~~~~~~~~l~ta~~~~~ 91 (168)
T cd00568 13 DAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGA-ALAAPDRPVVCIAGDGGFMMTGQELATAVRYGL 91 (168)
T ss_pred CCEEEeCCcHHHHHHHHheeeCCCCcEEeCCCchhhhhhHHHHHHH-HHhCCCCcEEEEEcCcHHhccHHHHHHHHHcCC
Confidence 3335555566666666655442222232333444433322222111 00111467899999985 66677888888
Q ss_pred ceeEeccccc
Q psy11337 133 PFWRISSRSD 142 (155)
Q Consensus 133 PFwrI~~~~D 142 (155)
|+.-|=.++.
T Consensus 92 ~~~~iv~nN~ 101 (168)
T cd00568 92 PVIVVVFNNG 101 (168)
T ss_pred CcEEEEEECC
Confidence 8877655443
No 250
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=33.90 E-value=1.2e+02 Score=25.22 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=34.3
Q ss_pred cChhhHHHHHHHHhCCCceEEEecCC----HHHHHHHHHcCCceeEecccccHHHHHHHhhcC
Q psy11337 95 IGKDSCFERIVTRFGRKCTYVVIGDG----QDEEAAAKQRNFPFWRISSRSDLAALYHALDNG 153 (155)
Q Consensus 95 ~GKescFerI~~RFG~k~~yvvIGDG----~eEe~aAk~~~~PFwrI~~~~Dl~~L~~al~~~ 153 (155)
-+-..++++++++|+. +.||-| .|+-+.|...+--|. |+.+-|-.-+..+.+.+
T Consensus 44 ~~a~~~i~~l~~~~~~----~~vGAGTVl~~~~a~~a~~aGA~Fi-vsP~~~~~v~~~~~~~~ 101 (204)
T TIGR01182 44 PVALDAIRLLRKEVPD----ALIGAGTVLNPEQLRQAVDAGAQFI-VSPGLTPELAKHAQDHG 101 (204)
T ss_pred ccHHHHHHHHHHHCCC----CEEEEEeCCCHHHHHHHHHcCCCEE-ECCCCCHHHHHHHHHcC
Confidence 4556788888888863 455544 355556777777777 67666655555555544
No 251
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.86 E-value=1.3e+02 Score=27.00 Aligned_cols=84 Identities=17% Similarity=0.267 Sum_probs=45.5
Q ss_pred HHHHHHhhhhcCCC----ceEEEEeCCCchHHHHHHHHhhcc----------------cccccCccccccccChhhHHHH
Q psy11337 44 LAIKCLTLINQRPS----CTNVIVITTQLIPALSKIMLFGLS----------------GIFDVENIYSSTKIGKDSCFER 103 (155)
Q Consensus 44 ~A~k~L~~i~~r~~----~vNVLVTt~qLVpaLaK~LLygL~----------------~~fpieNIYSa~k~GKescFer 103 (155)
.+.+++..++.... ..+|-|+|..++|.+-++.=..+. .+.|+.|-|+-.++= .-++.
T Consensus 178 ~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll--~~l~~ 255 (356)
T PRK14462 178 NVSKAIKIFSENDGLAISPRRQTISTSGLASKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESII--DAVRK 255 (356)
T ss_pred HHHHHHHHhcCccCCCcCCCceEEECCCChHHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHH--HHHHH
Confidence 34566666665411 247899999999998884433331 123344444222111 22233
Q ss_pred HHHHhCCC--ceEEEecCCHHHHHHHHH
Q psy11337 104 IVTRFGRK--CTYVVIGDGQDEEAAAKQ 129 (155)
Q Consensus 104 I~~RFG~k--~~yvvIGDG~eEe~aAk~ 129 (155)
...+-|++ ..|++|.+=-|..+-|++
T Consensus 256 y~~~~~~~i~ieyvLI~GvNDs~e~a~~ 283 (356)
T PRK14462 256 FPIDQRKRVMFEYLVIKDVNDDLKSAKK 283 (356)
T ss_pred HHHHhCCeEEEEEEEECCCCCCHHHHHH
Confidence 34455888 678999655444444433
No 252
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=33.83 E-value=44 Score=23.22 Aligned_cols=46 Identities=17% Similarity=0.413 Sum_probs=35.2
Q ss_pred cChhhHHHHHHHHhCCCceEEEecCCHHHH-------HHHHHcCCceeEecccccH
Q psy11337 95 IGKDSCFERIVTRFGRKCTYVVIGDGQDEE-------AAAKQRNFPFWRISSRSDL 143 (155)
Q Consensus 95 ~GKescFerI~~RFG~k~~yvvIGDG~eEe-------~aAk~~~~PFwrI~~~~Dl 143 (155)
.|-.+|.+.|+.. +..+|++....++. .-|+++++|+..+.+..+|
T Consensus 18 ~G~~~v~k~l~~~---~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~eL 70 (95)
T PF01248_consen 18 KGIKEVLKALKKG---KAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKEEL 70 (95)
T ss_dssp ESHHHHHHHHHTT---CESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHHHH
T ss_pred EchHHHHHHHHcC---CCcEEEEcCCCChhhhcccchhheeccceeEEEECCHHHH
Confidence 5788898888876 89999988665542 3567999999999865444
No 253
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=33.68 E-value=71 Score=25.63 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=39.1
Q ss_pred cChhhHHHHHHHHhCCC-ceEEEecCCHHHHHHHHHcCCceeEecccccHHHH
Q psy11337 95 IGKDSCFERIVTRFGRK-CTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAAL 146 (155)
Q Consensus 95 ~GKescFerI~~RFG~k-~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L 146 (155)
+.|...-+++.+++|-+ -.-+++||+.-.-+-=+..+.++---+.++.+.++
T Consensus 188 ~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~Na~~~~k~~ 240 (264)
T COG0561 188 VSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMGNADEELKEL 240 (264)
T ss_pred CchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeeccCCCHHHHhh
Confidence 57999999999999965 56999999987776666666666665555544443
No 254
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=33.68 E-value=79 Score=24.94 Aligned_cols=40 Identities=25% Similarity=0.493 Sum_probs=33.8
Q ss_pred cccccccChhhHHHHHHHHhCCCceEEEecCCHHHHHHHH
Q psy11337 89 IYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAAK 128 (155)
Q Consensus 89 IYSa~k~GKescFerI~~RFG~k~~yvvIGDG~eEe~aAk 128 (155)
|.+.++.||-+-=+.+..+.|.++.|+.-+...|+|-..+
T Consensus 4 i~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~r 43 (169)
T cd00544 4 VTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAER 43 (169)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHH
Confidence 5678899999988888888899999999998887775554
No 255
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=33.57 E-value=1.4e+02 Score=23.56 Aligned_cols=34 Identities=9% Similarity=0.129 Sum_probs=28.3
Q ss_pred CccccccccChhhHHHHHHHHhCCCceEEEecCC
Q psy11337 87 ENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDG 120 (155)
Q Consensus 87 eNIYSa~k~GKescFerI~~RFG~k~~yvvIGDG 120 (155)
...|+++|.+=+.-.+.+...++++++..+|.=|
T Consensus 152 ~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG 185 (262)
T TIGR03325 152 GPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPG 185 (262)
T ss_pred CchhHHHHHHHHHHHHHHHHhhccCeEEEEEecC
Confidence 3479999999888888888889888888877654
No 256
>PRK07478 short chain dehydrogenase; Provisional
Probab=33.56 E-value=2.3e+02 Score=22.07 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=48.0
Q ss_pred HHHHHhHHhhhHHHHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHHh
Q psy11337 29 QLRAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRF 108 (155)
Q Consensus 29 ~lr~e~e~~Td~WLs~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RF 108 (155)
++...++.-..+-+..++.++.....+. .-.|+.+++.. +.....|-...|+++|.+=+.-.+-+...+
T Consensus 107 ~~~~~~~~N~~~~~~~~~~~~~~l~~~~-~~~iv~~sS~~----------~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~ 175 (254)
T PRK07478 107 GWRETLATNLTSAFLGAKHQIPAMLARG-GGSLIFTSTFV----------GHTAGFPGMAAYAASKAGLIGLTQVLAAEY 175 (254)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEechH----------hhccCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555565554332 33455554421 111223455789999999888888888888
Q ss_pred CC-CceEEEecCCH
Q psy11337 109 GR-KCTYVVIGDGQ 121 (155)
Q Consensus 109 G~-k~~yvvIGDG~ 121 (155)
++ +++..+|.-|.
T Consensus 176 ~~~gi~v~~v~PG~ 189 (254)
T PRK07478 176 GAQGIRVNALLPGG 189 (254)
T ss_pred hhcCEEEEEEeeCc
Confidence 64 58877776554
No 257
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=33.45 E-value=69 Score=29.12 Aligned_cols=47 Identities=28% Similarity=0.390 Sum_probs=33.4
Q ss_pred ccccC----hhhHHHHHHHHhC----CCceEEEecCCHH-HHHHHHHcCCceeEec
Q psy11337 92 STKIG----KDSCFERIVTRFG----RKCTYVVIGDGQD-EEAAAKQRNFPFWRIS 138 (155)
Q Consensus 92 a~k~G----KescFerI~~RFG----~k~~yvvIGDG~e-Ee~aAk~~~~PFwrI~ 138 (155)
++|.| =.++|++++++++ ...++|+|+|... =++.|++.++|.+.|-
T Consensus 118 iSKSGtT~ETl~~~~~~~~~~~~~~~~~~~~v~vTd~~s~L~~~a~~~g~~~f~ip 173 (410)
T PRK03868 118 ISKSGTTIETISIFKYLLSHFKLDQELKKNFLFITDPDSKLEQFAKENNIKCFNIP 173 (410)
T ss_pred EeCCCCCHHHHHHHHHHHHHhccccccccEEEEEecCCchHHHhHHhcCCcEEecC
Confidence 45555 3578999999874 1448999997544 4567899998887653
No 258
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=33.42 E-value=14 Score=24.33 Aligned_cols=20 Identities=35% Similarity=0.610 Sum_probs=13.8
Q ss_pred HHHHHHHhhcccccccCcccccc
Q psy11337 71 ALSKIMLFGLSGIFDVENIYSST 93 (155)
Q Consensus 71 aLaK~LLygL~~~fpieNIYSa~ 93 (155)
++.-=|+||||++| |+.|..
T Consensus 17 a~ilglIyGlGevf---N~iS~~ 36 (41)
T PF10766_consen 17 ALILGLIYGLGEVF---NLISKI 36 (41)
T ss_pred HHHHHHHHHHHHHH---HHHHhc
Confidence 44555789999999 445443
No 259
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=33.29 E-value=86 Score=26.96 Aligned_cols=45 Identities=20% Similarity=0.420 Sum_probs=33.1
Q ss_pred ChhhHHHHHHHHh--CC-C-ceEEEecCCHHHHHHHHHcCCceeEeccc
Q psy11337 96 GKDSCFERIVTRF--GR-K-CTYVVIGDGQDEEAAAKQRNFPFWRISSR 140 (155)
Q Consensus 96 GKescFerI~~RF--G~-k-~~yvvIGDG~eEe~aAk~~~~PFwrI~~~ 140 (155)
|.-+||+-|..++ |. + -.=+||+|..+=...|+++|+|+..++..
T Consensus 98 g~gsnl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~ 146 (286)
T PRK06027 98 KEDHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPVT 146 (286)
T ss_pred CCCCCHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEeccC
Confidence 3459999999888 32 2 24456678776677899999999987643
No 260
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=33.22 E-value=1.8e+02 Score=25.48 Aligned_cols=63 Identities=19% Similarity=0.174 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccc------cccccChhhHHHHHH
Q psy11337 39 DNWLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIY------SSTKIGKDSCFERIV 105 (155)
Q Consensus 39 d~WLs~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIY------Sa~k~GKescFerI~ 105 (155)
..|...|.++++.|.+|. .+=|||=-|.| -.|-||+|+...=|.+.-- -..+.|.+..+++++
T Consensus 75 ~~f~~~a~~~i~~i~~~g-k~PilvGGTgl---Yi~all~gl~~~p~~~~~~r~~~~~~~~~~g~~~l~~~L~ 143 (300)
T PRK14729 75 GIFYKEALKIIKELRQQK-KIPIFVGGSAF---YFKHLKYGLPSTPPVSSKIRIYVNNLFTLKGKSYLLEELK 143 (300)
T ss_pred HHHHHHHHHHHHHHHHCC-CCEEEEeCchH---HHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 568899999999998884 45577777766 4677889986543332210 012356777777664
No 261
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=32.74 E-value=2.6e+02 Score=22.33 Aligned_cols=112 Identities=16% Similarity=0.129 Sum_probs=69.9
Q ss_pred HhhhHHHHHHHHHHhhhhcCCCceEEE-EeCCCchHHHHHHHHhh--cccccccCcc-ccccccCh------hhHHHHHH
Q psy11337 36 SVTDNWLSLAIKCLTLINQRPSCTNVI-VITTQLIPALSKIMLFG--LSGIFDVENI-YSSTKIGK------DSCFERIV 105 (155)
Q Consensus 36 ~~Td~WLs~A~k~L~~i~~r~~~vNVL-VTt~qLVpaLaK~LLyg--L~~~fpieNI-YSa~k~GK------escFerI~ 105 (155)
..||.=+..|.+.|....-.+..+-|. |-..-=+|..+|.|+-. .+.++.+.=| =+.|..-. -+++-++.
T Consensus 25 ~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavIalG~VIrG~T~H~e~V~~~v~~gl~~v~ 104 (154)
T PRK00061 25 FITDALLEGALDALKRHGVSEENIDVVRVPGAFEIPLAAKKLAESGKYDAVIALGAVIRGETPHFDYVANEVAKGLADVS 104 (154)
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEECCCHHHHHHHHHHHHHcCCCCEEEEEeeEEcCCCchHHHHHHHHHHHHHHHH
Confidence 456777777877777665333444443 33333489999998853 6677666443 12222221 25567777
Q ss_pred HHhCCCceEEEecCCHHHHHHHHHcCCceeEecccccHHHHHHHhhc
Q psy11337 106 TRFGRKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAALYHALDN 152 (155)
Q Consensus 106 ~RFG~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L~~al~~ 152 (155)
=++|.-+.|-|++.. .|+||..+.+ .-..+-..++-..|++|
T Consensus 105 l~~~~PV~~GVLt~~-~~eQa~~R~~----~~~~nkG~eaa~aal~m 146 (154)
T PRK00061 105 LETGVPVGFGVLTTD-TIEQAIERAG----TKAGNKGAEAALAALEM 146 (154)
T ss_pred hccCCCEEEEecCCC-CHHHHHHHhC----ccccccHHHHHHHHHHH
Confidence 789999999999999 5566655544 12235556777777765
No 262
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=32.68 E-value=1.6e+02 Score=25.50 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=39.9
Q ss_pred ChhhHHHHHHHHhCC----CceEEEecCCHHHHHHHHHc---CCceeEecccccH
Q psy11337 96 GKDSCFERIVTRFGR----KCTYVVIGDGQDEEAAAKQR---NFPFWRISSRSDL 143 (155)
Q Consensus 96 GKescFerI~~RFG~----k~~yvvIGDG~eEe~aAk~~---~~PFwrI~~~~Dl 143 (155)
|+.+-.+++.+.||+ +-.++++|.|.--...|+.+ +.++.-|+.+++.
T Consensus 212 g~~~~l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~ 266 (453)
T PRK09496 212 GAREHIRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPER 266 (453)
T ss_pred eCHHHHHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 777888999998874 35799999999988888876 7899999888774
No 263
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=32.66 E-value=3.7e+02 Score=24.09 Aligned_cols=76 Identities=12% Similarity=0.061 Sum_probs=42.2
Q ss_pred EEEeCCCchHHHHHHHHhhcccccccCccccccccChhh--------------------HHHHHHHHhC-CCceEEEecC
Q psy11337 61 VIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDS--------------------CFERIVTRFG-RKCTYVVIGD 119 (155)
Q Consensus 61 VLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKes--------------------cFerI~~RFG-~k~~yvvIGD 119 (155)
++.....+.-+++|.|. .||--...=-.+...+.-+++ =++.+.++.. .+.. ++||.
T Consensus 307 ~i~g~~~~~~~la~~L~-elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e~~~~i~~~~pD-liiG~ 384 (435)
T cd01974 307 ALYGDPDFLIGLTSFLL-ELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYPGKDLWHLRSLLFTEPVD-LLIGN 384 (435)
T ss_pred EEEcChHHHHHHHHHHH-HCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEECCCHHHHHHHHhhcCCC-EEEEC
Confidence 44466778899999998 787655331111110000000 1222222221 1222 47777
Q ss_pred CHHHHHHHHHcCCceeEecc
Q psy11337 120 GQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 120 G~eEe~aAk~~~~PFwrI~~ 139 (155)
.. |...|++++.||.+++.
T Consensus 385 s~-~~~~a~~~gip~v~~~~ 403 (435)
T cd01974 385 TY-GKYIARDTDIPLVRFGF 403 (435)
T ss_pred cc-HHHHHHHhCCCEEEeeC
Confidence 74 67889999999999875
No 264
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=32.50 E-value=1.5e+02 Score=25.23 Aligned_cols=71 Identities=11% Similarity=0.164 Sum_probs=42.0
Q ss_pred EEEEeCCCc-hHHHHHHHHhhccc-ccccCccccccc--cChhhHHHHHHHHhC-CCceEEEecCCHHHHHHHHHcCCce
Q psy11337 60 NVIVITTQL-IPALSKIMLFGLSG-IFDVENIYSSTK--IGKDSCFERIVTRFG-RKCTYVVIGDGQDEEAAAKQRNFPF 134 (155)
Q Consensus 60 NVLVTt~qL-VpaLaK~LLygL~~-~fpieNIYSa~k--~GKescFerI~~RFG-~k~~yvvIGDG~eEe~aAk~~~~PF 134 (155)
=|+.+.+++ +++++++- .+|- ++|- +.+.+ ..|....+.+.++.| +-..|..+.|..|=.+++.++++|+
T Consensus 78 ~vi~~~e~~~~~~~~~l~--~~g~~~~~~---~~a~~~~~dK~~~k~~l~~~~gip~p~~~~~~s~~~l~~~~~~~g~P~ 152 (395)
T PRK09288 78 YIVPEIEAIATDALVELE--KEGFNVVPT---ARATRLTMNREGIRRLAAEELGLPTSPYRFADSLEELRAAVEEIGYPC 152 (395)
T ss_pred EEEEeeCcCCHHHHHHHH--hcCCeeCCC---HHHHHHHhCHHHHHHHHHHhCCCCCCCceEECCHHHHHHHHHhcCCCE
Confidence 344444453 56666653 3332 2232 22222 457666665556788 6678999888755556778899997
Q ss_pred e
Q psy11337 135 W 135 (155)
Q Consensus 135 w 135 (155)
+
T Consensus 153 V 153 (395)
T PRK09288 153 V 153 (395)
T ss_pred E
Confidence 4
No 265
>PTZ00445 p36-lilke protein; Provisional
Probab=32.19 E-value=56 Score=28.05 Aligned_cols=71 Identities=11% Similarity=0.200 Sum_probs=49.5
Q ss_pred HHHHHHhhcccccccCcccc----------------cccc---ChhhHHHHHHHHhCCC-ceEEEecCCHHHHHHHHHcC
Q psy11337 72 LSKIMLFGLSGIFDVENIYS----------------STKI---GKDSCFERIVTRFGRK-CTYVVIGDGQDEEAAAKQRN 131 (155)
Q Consensus 72 LaK~LLygL~~~fpieNIYS----------------a~k~---GKescFerI~~RFG~k-~~yvvIGDG~eEe~aAk~~~ 131 (155)
|++-.|=.=.--|.|+++|. ..|- .|.-=|+++.+|||-+ -.-+-|=|..+-.+||+++|
T Consensus 119 li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lG 198 (219)
T PTZ00445 119 MVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEG 198 (219)
T ss_pred HHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCC
Confidence 33333333466788888882 2221 2323349999999954 67788999999999999999
Q ss_pred CceeEeccccc
Q psy11337 132 FPFWRISSRSD 142 (155)
Q Consensus 132 ~PFwrI~~~~D 142 (155)
|--.......+
T Consensus 199 i~ai~f~~~e~ 209 (219)
T PTZ00445 199 YIALHVTGNEG 209 (219)
T ss_pred CEEEEcCChHh
Confidence 98888775443
No 266
>KOG3086|consensus
Probab=32.15 E-value=78 Score=28.35 Aligned_cols=51 Identities=16% Similarity=0.405 Sum_probs=40.0
Q ss_pred CchHHHHHHHHhhcc--cccccCccccccccChhhHHHHHHHHh--CCCceEEEecC
Q psy11337 67 QLIPALSKIMLFGLS--GIFDVENIYSSTKIGKDSCFERIVTRF--GRKCTYVVIGD 119 (155)
Q Consensus 67 qLVpaLaK~LLygL~--~~fpieNIYSa~k~GKescFerI~~RF--G~k~~yvvIGD 119 (155)
-..|-|||+|.-.=+ .+||| .-++....+++||..|.+.| .++--|||-.|
T Consensus 133 M~lP~lak~l~~~~~~~kivPi--lvg~ls~~~e~~~g~lls~Yi~Dp~NlFvvSSD 187 (296)
T KOG3086|consen 133 MQLPYLAKVLESRKDTVKIVPI--LVGALSPSVEQCYGKLLSKYIKDPSNLFVVSSD 187 (296)
T ss_pred hhhHHHHHHHhhcCceEEEEee--EecccChHHHHHHHHHHHHHhcCccceEEEecc
Confidence 357999999987763 34555 34555667999999999999 79999999887
No 267
>PRK08265 short chain dehydrogenase; Provisional
Probab=31.66 E-value=2.6e+02 Score=22.13 Aligned_cols=34 Identities=9% Similarity=0.135 Sum_probs=28.2
Q ss_pred CccccccccChhhHHHHHHHHhCC-CceEEEecCC
Q psy11337 87 ENIYSSTKIGKDSCFERIVTRFGR-KCTYVVIGDG 120 (155)
Q Consensus 87 eNIYSa~k~GKescFerI~~RFG~-k~~yvvIGDG 120 (155)
...|+++|-+=++..+.+...|++ +++..+|.-|
T Consensus 147 ~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG 181 (261)
T PRK08265 147 RWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPG 181 (261)
T ss_pred CchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccC
Confidence 457999999999999999999965 5888888644
No 268
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=31.59 E-value=70 Score=25.63 Aligned_cols=12 Identities=42% Similarity=0.753 Sum_probs=8.1
Q ss_pred CCceEEEecCCH
Q psy11337 110 RKCTYVVIGDGQ 121 (155)
Q Consensus 110 ~k~~yvvIGDG~ 121 (155)
++.+||++|||.
T Consensus 97 ~~~vv~~~GDG~ 108 (195)
T cd02007 97 KRKVIAVIGDGA 108 (195)
T ss_pred CCeEEEEEcccc
Confidence 456777777775
No 269
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=31.53 E-value=39 Score=29.29 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=25.3
Q ss_pred CCceEEEecCCHH---HHHHHHHcCCceeEecccccHHHHHHH
Q psy11337 110 RKCTYVVIGDGQD---EEAAAKQRNFPFWRISSRSDLAALYHA 149 (155)
Q Consensus 110 ~k~~yvvIGDG~e---Ee~aAk~~~~PFwrI~~~~Dl~~L~~a 149 (155)
+|.+|+|+||..- -..-|+++|+| |=+..++.+|-.+
T Consensus 268 ~~t~~lv~g~~~~~ssK~~kA~~~gi~---ii~e~~f~~ll~~ 307 (313)
T PRK06063 268 RDTSLVVCNDPAPEQGKGYHARQLGVP---VLDEAAFLELLRA 307 (313)
T ss_pred cCccEEEECCCCCcccHHHHHHHcCCc---cccHHHHHHHHHh
Confidence 6688999997433 45678889988 4455566555443
No 270
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=31.46 E-value=29 Score=29.53 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=19.4
Q ss_pred HHHHHHHcCCceeEecccccHHH
Q psy11337 123 EEAAAKQRNFPFWRISSRSDLAA 145 (155)
Q Consensus 123 Ee~aAk~~~~PFwrI~~~~Dl~~ 145 (155)
-+..|+.+++||.+|+.+||+..
T Consensus 60 a~~lA~~l~~~~~~i~~t~~l~p 82 (329)
T COG0714 60 ARALARALGLPFVRIQCTPDLLP 82 (329)
T ss_pred HHHHHHHhCCCeEEEecCCCCCH
Confidence 45678899999999999999754
No 271
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=31.42 E-value=98 Score=25.08 Aligned_cols=44 Identities=20% Similarity=0.176 Sum_probs=34.0
Q ss_pred ccChhhHHHHHHHHhC-CCceEEEecCCHHHHHHHHHc-------CCceeEe
Q psy11337 94 KIGKDSCFERIVTRFG-RKCTYVVIGDGQDEEAAAKQR-------NFPFWRI 137 (155)
Q Consensus 94 k~GKescFerI~~RFG-~k~~yvvIGDG~eEe~aAk~~-------~~PFwrI 137 (155)
.+.|....++|.+++| +...=++|||+.--+.+++.. +.....+
T Consensus 165 ~~~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v 216 (244)
T TIGR00685 165 FVNKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPI 216 (244)
T ss_pred CCCHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEE
Confidence 5789999999999997 334459999998888877777 4455555
No 272
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=31.38 E-value=1.9e+02 Score=25.42 Aligned_cols=65 Identities=22% Similarity=0.242 Sum_probs=47.1
Q ss_pred CccccccccChhhHHHHHHHHh-CCCceEEEecCCHHHHHH--HHHcCCceeEecc----cccHHHHHHHhh
Q psy11337 87 ENIYSSTKIGKDSCFERIVTRF-GRKCTYVVIGDGQDEEAA--AKQRNFPFWRISS----RSDLAALYHALD 151 (155)
Q Consensus 87 eNIYSa~k~GKescFerI~~RF-G~k~~yvvIGDG~eEe~a--Ak~~~~PFwrI~~----~~Dl~~L~~al~ 151 (155)
=||=|+-..||-+-++++..+. +++-.-|+.||-.+...| -+..+.|.+.|++ |.|..-+.+|++
T Consensus 107 v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~ 178 (290)
T PRK10463 107 LNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAP 178 (290)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHH
Confidence 3566888899999999999998 555666677774333332 2456899999987 777766777664
No 273
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.34 E-value=2.3e+02 Score=21.80 Aligned_cols=76 Identities=8% Similarity=0.099 Sum_probs=42.5
Q ss_pred HhHHhhhHHHHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHHhC-CC
Q psy11337 33 EIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFG-RK 111 (155)
Q Consensus 33 e~e~~Td~WLs~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RFG-~k 111 (155)
.++..+.+-+..+..++.....+.. -.|+.+|+.. + ....|-...|+++|.+-++-.+-+..++. .+
T Consensus 109 ~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~~sS~~--~---------~~~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~ 176 (250)
T PRK08063 109 TMNINAKALLFCAQEAAKLMEKVGG-GKIISLSSLG--S---------IRYLENYTTVGVSKAALEALTRYLAVELAPKG 176 (250)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCC-eEEEEEcchh--h---------ccCCCCccHHHHHHHHHHHHHHHHHHHHhHhC
Confidence 4455555555566666665543332 2344444311 1 01234567899999988777777766663 44
Q ss_pred ceEEEecCC
Q psy11337 112 CTYVVIGDG 120 (155)
Q Consensus 112 ~~yvvIGDG 120 (155)
++.++|.-|
T Consensus 177 i~v~~i~pg 185 (250)
T PRK08063 177 IAVNAVSGG 185 (250)
T ss_pred eEEEeEecC
Confidence 666655444
No 274
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=31.31 E-value=1.3e+02 Score=19.95 Aligned_cols=45 Identities=20% Similarity=0.454 Sum_probs=28.7
Q ss_pred hhHHHHHHHHhC--CCceEEEecCCHHHHH---HHHHcCCceeEeccccc
Q psy11337 98 DSCFERIVTRFG--RKCTYVVIGDGQDEEA---AAKQRNFPFWRISSRSD 142 (155)
Q Consensus 98 escFerI~~RFG--~k~~yvvIGDG~eEe~---aAk~~~~PFwrI~~~~D 142 (155)
..-...+.++|+ .++.+|.|+-..++++ ..++++.|+..+..+.+
T Consensus 20 ~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (95)
T PF13905_consen 20 LPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDD 69 (95)
T ss_dssp HHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTH
T ss_pred HHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcc
Confidence 344677888997 8899998887655333 45566556555555444
No 275
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=31.28 E-value=48 Score=26.32 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCCceEEEecCCHHHHHH
Q psy11337 100 CFERIVTRFGRKCTYVVIGDGQDEEAA 126 (155)
Q Consensus 100 cFerI~~RFG~k~~yvvIGDG~eEe~a 126 (155)
.++.+.++.++++.++++|+|.++...
T Consensus 214 a~~~l~~~~~~~~~~~i~G~~~~~~~~ 240 (365)
T cd03825 214 ALKRLAERWKDDIELVVFGASDPEIPP 240 (365)
T ss_pred HHHHhhhccCCCeEEEEeCCCchhhhc
Confidence 344444444688999999999776553
No 276
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=31.28 E-value=1.8e+02 Score=24.15 Aligned_cols=48 Identities=10% Similarity=0.013 Sum_probs=27.7
Q ss_pred HHHHHHhCCCceEEEecC-CHHHHHH---HHHc-CCceeEecccccHHHHHHHhhc
Q psy11337 102 ERIVTRFGRKCTYVVIGD-GQDEEAA---AKQR-NFPFWRISSRSDLAALYHALDN 152 (155)
Q Consensus 102 erI~~RFG~k~~yvvIGD-G~eEe~a---Ak~~-~~PFwrI~~~~Dl~~L~~al~~ 152 (155)
+.+.++ .+++.++++|+ +.++++. .+++ +.+++-+ .+|+..++.+.|+
T Consensus 212 ~~l~~~-~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~aDl 264 (380)
T PRK00025 212 QLLQQR-YPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLL--DGQKREAMAAADA 264 (380)
T ss_pred HHHHHh-CCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEE--cccHHHHHHhCCE
Confidence 334444 35788888876 5433332 3334 5554433 3678888887764
No 277
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=31.20 E-value=2.5e+02 Score=25.85 Aligned_cols=64 Identities=13% Similarity=0.201 Sum_probs=37.9
Q ss_pred EEEeCCCchHHHHHHHHhhcccccccCcccccc-ccChhhHHHHHHHHhCCCceEEEecCCHHHHHHHHHcCCc
Q psy11337 61 VIVITTQLIPALSKIMLFGLSGIFDVENIYSST-KIGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAAKQRNFP 133 (155)
Q Consensus 61 VLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~-k~GKescFerI~~RFG~k~~yvvIGDG~eEe~aAk~~~~P 133 (155)
+++|+..--.+..-+=-.|++.+| +.. ...|....++++++. ..-+.||||.-...|+++.++.
T Consensus 383 ~vvTgd~~~~a~~i~~~lgi~~~f------~~~~p~~K~~~i~~l~~~~---~~v~~vGDg~nD~~al~~A~vg 447 (536)
T TIGR01512 383 VMLTGDRRAVAERVARELGIDEVH------AELLPEDKLEIVKELREKY---GPVAMVGDGINDAPALAAADVG 447 (536)
T ss_pred EEEcCCCHHHHHHHHHHcCChhhh------hccCcHHHHHHHHHHHhcC---CEEEEEeCCHHHHHHHHhCCEE
Confidence 456665443332222233554444 332 346766666554432 4567899999999999998863
No 278
>COG5275 BRCT domain type II [General function prediction only]
Probab=31.01 E-value=72 Score=28.15 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=25.0
Q ss_pred HHHHHHhCCC--------ceEEEecC--CHHHHHHHHHcCCcee
Q psy11337 102 ERIVTRFGRK--------CTYVVIGD--GQDEEAAAKQRNFPFW 135 (155)
Q Consensus 102 erI~~RFG~k--------~~yvvIGD--G~eEe~aAk~~~~PFw 135 (155)
+-++.+||-+ -+|+|.|| |+.--+-+|||++|..
T Consensus 177 ~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~ekiKqlkIkai 220 (276)
T COG5275 177 KTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKIKQLKIKAI 220 (276)
T ss_pred HHHHHHhCCeeecccccceeEEEecCCCChHHHHHHHHhCCccc
Confidence 3455667655 46999999 6667788999998854
No 279
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=30.98 E-value=1.9e+02 Score=20.53 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=36.1
Q ss_pred hHHHHHHHHhCCCceEEEecCCHHH-----------HHHHHHcCCceeEecc--cccHHHHHHHh
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQDE-----------EAAAKQRNFPFWRISS--RSDLAALYHAL 150 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~eE-----------e~aAk~~~~PFwrI~~--~~Dl~~L~~al 150 (155)
.-++.|.++.+.++..++||.-.|. ..-++..++|+..+|+ ...+..+..++
T Consensus 93 ~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 157 (161)
T cd01861 93 KWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKI 157 (161)
T ss_pred HHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 3456677777778888888865554 3356677899999988 34466666554
No 280
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.93 E-value=1.8e+02 Score=26.06 Aligned_cols=80 Identities=9% Similarity=0.115 Sum_probs=48.2
Q ss_pred HHHHHHHhhhhcCC--CceEEEEeCCCchHHHHHHHHh--------hcc--------cccccCccccccccChhhHHHHH
Q psy11337 43 SLAIKCLTLINQRP--SCTNVIVITTQLIPALSKIMLF--------GLS--------GIFDVENIYSSTKIGKDSCFERI 104 (155)
Q Consensus 43 s~A~k~L~~i~~r~--~~vNVLVTt~qLVpaLaK~LLy--------gL~--------~~fpieNIYSa~k~GKescFerI 104 (155)
....++++.++... ...++.|+|-.++|..-++.-- .|+ .+.|+.+-|+..++- +.|-+.
T Consensus 158 d~vl~ai~~l~~~~~i~~r~itiST~G~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~-~a~~~~- 235 (344)
T PRK14464 158 DNVLEAIDLLGTEGGIGHKNLVFSTVGDPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELV-ELGEAY- 235 (344)
T ss_pred HHHHHHHHHhhchhcCCCceEEEecccCchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHH-HHHHHH-
Confidence 33445555554332 5678888998888887666532 333 356677777765554 455444
Q ss_pred HHHhCCCc--eEEEec---CCHHHH
Q psy11337 105 VTRFGRKC--TYVVIG---DGQDEE 124 (155)
Q Consensus 105 ~~RFG~k~--~yvvIG---DG~eEe 124 (155)
..++|+++ .|+.|. |+.|+.
T Consensus 236 ~~~~grri~~EyvLl~GVNDs~e~a 260 (344)
T PRK14464 236 ARATGYPIQYQWTLLEGVNDSDEEM 260 (344)
T ss_pred HHHHCCEEEEEEEEeCCCCCCHHHH
Confidence 45679885 567776 554444
No 281
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=30.91 E-value=3.8e+02 Score=23.76 Aligned_cols=75 Identities=15% Similarity=0.124 Sum_probs=42.9
Q ss_pred EEEeCCCchHHHHHHHHhhcccccccCccccccccChh--h------------------HHHHHHHHhCCCceEEEecCC
Q psy11337 61 VIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKD--S------------------CFERIVTRFGRKCTYVVIGDG 120 (155)
Q Consensus 61 VLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKe--s------------------cFerI~~RFG~k~~yvvIGDG 120 (155)
.+++.....-++++.|. .+|..++ -+++.+...+. . =++.+.++.-+..-=++||+.
T Consensus 303 ~i~~~~~~~~~l~~~L~-e~G~~v~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~el~~~i~~~~pdliig~~ 379 (428)
T cd01965 303 AIAGDPDLLLGLSRFLL-EMGAEPV--AAVTGTDNPPFEKRMELLASLEGIPAEVVFVGDLWDLESLAKEEPVDLLIGNS 379 (428)
T ss_pred EEEcChHHHHHHHHHHH-HcCCcce--EEEEcCCCchhHHHHHHhhhhcCCCceEEECCCHHHHHHHhhccCCCEEEECc
Confidence 34455667777888886 7766543 24443332210 0 123333334222233567877
Q ss_pred HHHHHHHHHcCCceeEecc
Q psy11337 121 QDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 121 ~eEe~aAk~~~~PFwrI~~ 139 (155)
. |...|++++.||.+++.
T Consensus 380 ~-~~~~a~~~~ip~i~~~~ 397 (428)
T cd01965 380 H-GRYLARDLGIPLVRVGF 397 (428)
T ss_pred h-hHHHHHhcCCCEEEecC
Confidence 4 47788889999998875
No 282
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=30.87 E-value=53 Score=23.63 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHhCCCce----------EEEecCCHHHHHHHHHc
Q psy11337 97 KDSCFERIVTRFGRKCT----------YVVIGDGQDEEAAAKQR 130 (155)
Q Consensus 97 KescFerI~~RFG~k~~----------yvvIGDG~eEe~aAk~~ 130 (155)
...-++++.+.+|-|+. ||+|-+.+|++.|++..
T Consensus 21 R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~ 64 (91)
T PF08734_consen 21 RAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAAS 64 (91)
T ss_pred HHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHH
Confidence 44556777788877654 89999999999988753
No 283
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=30.69 E-value=2.1e+02 Score=24.00 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHhCCCceEEEecCCHHHH--HHHHHcCCc---eeEecccccHHHHHHHh
Q psy11337 97 KDSCFERIVTRFGRKCTYVVIGDGQDEE--AAAKQRNFP---FWRISSRSDLAALYHAL 150 (155)
Q Consensus 97 KescFerI~~RFG~k~~yvvIGDG~eEe--~aAk~~~~P---FwrI~~~~Dl~~L~~al 150 (155)
+.+++++|.+ +++++.+++++.-.|-- .+++..++| |.=+....|..+++..+
T Consensus 95 ~~~i~~~i~~-~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlgt~lds~r~~~~l 152 (300)
T cd01339 95 VKEVAENIKK-YAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMAGVLDSARFRYFI 152 (300)
T ss_pred HHHHHHHHHH-HCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEecchHHHHHHHHHH
Confidence 5678888877 78999999999766543 356777887 77777788877777654
No 284
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=30.48 E-value=87 Score=25.17 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=37.8
Q ss_pred CCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHHh
Q psy11337 66 TQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRF 108 (155)
Q Consensus 66 ~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RF 108 (155)
++|+...+.++-.---.+|=+|||..-....+...|+.|.+.|
T Consensus 88 ~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l 130 (335)
T PF00145_consen 88 NSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVFKEILEEL 130 (335)
T ss_dssp TSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHH
T ss_pred chhhHHHHHHHhhccceEEEecccceeeccccccccccccccc
Confidence 3899999999988888999999999999888889999999987
No 285
>PRK07577 short chain dehydrogenase; Provisional
Probab=30.43 E-value=2.2e+02 Score=21.69 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=24.2
Q ss_pred CccccccccChhhHHHHHHHHhC-CCceEEEecCC
Q psy11337 87 ENIYSSTKIGKDSCFERIVTRFG-RKCTYVVIGDG 120 (155)
Q Consensus 87 eNIYSa~k~GKescFerI~~RFG-~k~~yvvIGDG 120 (155)
...|+++|.+-+...+.+...++ .++++++|--|
T Consensus 136 ~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg 170 (234)
T PRK07577 136 RTSYSAAKSALVGCTRTWALELAEYGITVNAVAPG 170 (234)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecC
Confidence 46799999988887777776664 35777665443
No 286
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=30.36 E-value=1.2e+02 Score=22.32 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=31.1
Q ss_pred hHHHHHHHHhC-CCceEEEecCCHHHHHHHHHcC-------CceeEeccccc
Q psy11337 99 SCFERIVTRFG-RKCTYVVIGDGQDEEAAAKQRN-------FPFWRISSRSD 142 (155)
Q Consensus 99 scFerI~~RFG-~k~~yvvIGDG~eEe~aAk~~~-------~PFwrI~~~~D 142 (155)
.-|.-+.+.|- .|+.||+ .|..++...++.+| +|..+|....+
T Consensus 38 ~~~~~vAk~fk~gki~Fv~-~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~ 88 (111)
T cd03073 38 NRVLKVAKDFPDRKLNFAV-ADKEDFSHELEEFGLDFSGGEKPVVAIRTAKG 88 (111)
T ss_pred HHHHHHHHHCcCCeEEEEE-EcHHHHHHHHHHcCCCcccCCCCEEEEEeCCC
Confidence 45777788895 6888776 66667666777766 78888876544
No 287
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=30.36 E-value=1.2e+02 Score=24.62 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=40.0
Q ss_pred cccChhhHHHHHHHHhC-CCceEEEecCCHHHHHHHHHcCCceeEecccccHHH
Q psy11337 93 TKIGKDSCFERIVTRFG-RKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAA 145 (155)
Q Consensus 93 ~k~GKescFerI~~RFG-~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~ 145 (155)
..+.|.+--+++.+++| ..-.-++|||+.---+.=+..+.+|--=+.++.+.+
T Consensus 185 ~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~Na~~~vK~ 238 (272)
T PRK15126 185 VGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGNAMPQLRA 238 (272)
T ss_pred CCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccCChHHHHH
Confidence 34679999999999998 557789999998776666666666665555555544
No 288
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=29.92 E-value=1.4e+02 Score=24.25 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=48.3
Q ss_pred HHHHHHHHhhhhcCCCceEEEEeC--CCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHHhCCCceEEEecC
Q psy11337 42 LSLAIKCLTLINQRPSCTNVIVIT--TQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGD 119 (155)
Q Consensus 42 Ls~A~k~L~~i~~r~~~vNVLVTt--~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RFG~k~~yvvIGD 119 (155)
++.|.+++....++.. --+++|+ +.--..+++-|.=.+|--++.|.|++|... .-+.++++++.+..|+ +|.
T Consensus 16 ~~~a~e~i~~l~~~g~-~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~~----~~~~l~~~~~~~~v~v-~G~ 89 (236)
T TIGR01460 16 IPGAAEALNRLRAKGK-PVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGSV----TKDLLRQRFEGEKVYV-IGV 89 (236)
T ss_pred CcCHHHHHHHHHHCCC-eEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHHH----HHHHHHHhCCCCEEEE-ECC
Confidence 4456666666654433 3456663 346666777665434545788999998753 3455666663333444 454
Q ss_pred CHHHHHHHHHcCCc
Q psy11337 120 GQDEEAAAKQRNFP 133 (155)
Q Consensus 120 G~eEe~aAk~~~~P 133 (155)
. .-++..+.+++.
T Consensus 90 ~-~~~~~l~~~g~~ 102 (236)
T TIGR01460 90 G-ELRESLEGLGFR 102 (236)
T ss_pred H-HHHHHHHHcCCc
Confidence 3 334455666653
No 289
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.85 E-value=2.2e+02 Score=22.73 Aligned_cols=81 Identities=15% Similarity=0.157 Sum_probs=49.2
Q ss_pred HHHHHHHHhHHhhhHHHHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHH
Q psy11337 26 EWLQLRAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIV 105 (155)
Q Consensus 26 ~w~~lr~e~e~~Td~WLs~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~ 105 (155)
.|.++...++.-..+-+..++.++.....+..-+| +|+... ...|.-..|+++|.|=....+-+.
T Consensus 109 ~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~--is~~~~-------------~~~~~~~~Y~asKaal~~l~~~la 173 (256)
T PRK07889 109 PWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVG--LDFDAT-------------VAWPAYDWMGVAKAALESTNRYLA 173 (256)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEE--Eeeccc-------------ccCCccchhHHHHHHHHHHHHHHH
Confidence 45555555666555555566666666543322233 232211 113445568999999999999999
Q ss_pred HHhCC-CceEEEecCCH
Q psy11337 106 TRFGR-KCTYVVIGDGQ 121 (155)
Q Consensus 106 ~RFG~-k~~yvvIGDG~ 121 (155)
..+++ +++..+|--|.
T Consensus 174 ~el~~~gIrvn~v~PG~ 190 (256)
T PRK07889 174 RDLGPRGIRVNLVAAGP 190 (256)
T ss_pred HHhhhcCeEEEeeccCc
Confidence 98864 47777776653
No 290
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=29.71 E-value=33 Score=30.59 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=17.2
Q ss_pred HHHHHcCCceeEecccccHHH
Q psy11337 125 AAAKQRNFPFWRISSRSDLAA 145 (155)
Q Consensus 125 ~aAk~~~~PFwrI~~~~Dl~~ 145 (155)
+.|+.+|+||.||+.++|+..
T Consensus 83 ~lA~~l~~~~~rV~~~~~l~~ 103 (327)
T TIGR01650 83 QIAARLNWPCVRVNLDSHVSR 103 (327)
T ss_pred HHHHHHCCCeEEEEecCCCCh
Confidence 357888899999999998655
No 291
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=29.52 E-value=1.2e+02 Score=20.31 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=22.8
Q ss_pred ccccccccChhhHHHHHHHHh---CCCceEEEecCC
Q psy11337 88 NIYSSTKIGKDSCFERIVTRF---GRKCTYVVIGDG 120 (155)
Q Consensus 88 NIYSa~k~GKescFerI~~RF---G~k~~yvvIGDG 120 (155)
-|++...+||-+..+.|...+ +.++.|+-..+.
T Consensus 23 ~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 23 LLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDL 58 (151)
T ss_pred EEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh
Confidence 467788888888888888777 555555554443
No 292
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=29.45 E-value=3.3e+02 Score=25.13 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=28.0
Q ss_pred cChhhHHHHHHHHhCCCceEEEecCCHHHHHHHHHcCCce
Q psy11337 95 IGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAAKQRNFPF 134 (155)
Q Consensus 95 ~GKescFerI~~RFG~k~~yvvIGDG~eEe~aAk~~~~PF 134 (155)
.+|....+++++ .+-.-++||||.-.-.|+++.++.+
T Consensus 434 ~~K~~~v~~l~~---~~~~v~~vGDg~nD~~al~~A~vgi 470 (556)
T TIGR01525 434 EDKLAIVKELQE---EGGVVAMVGDGINDAPALAAADVGI 470 (556)
T ss_pred HHHHHHHHHHHH---cCCEEEEEECChhHHHHHhhCCEeE
Confidence 468877777765 2236778999999999999988543
No 293
>PF04839 PSRP-3_Ycf65: Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65); InterPro: IPR006924 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This small acidic protein is found in 30S ribosomal subunit of cyanobacteria and plant plastids. In plants it has been named plastid-specific ribosomal protein 3 (PSRP-3), and in cyanobacteria it is named Ycf65. Plastid-specific ribosomal proteins may mediate the effects of nuclear factors on plastid translation. The acidic PSRPs are thought to contribute to protein-protein interactions in the 30S subunit, and are not thought to bind RNA [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome, 0009536 plastid; PDB: 2KT9_A.
Probab=29.44 E-value=36 Score=23.10 Aligned_cols=24 Identities=33% Similarity=0.756 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHhHHhhhHHHHHHHH
Q psy11337 22 AKREEWLQLRAEIESVTDNWLSLAIK 47 (155)
Q Consensus 22 ~~r~~w~~lr~e~e~~Td~WLs~A~k 47 (155)
|+.+.|.+|+.++|. -.|++.+-+
T Consensus 8 Pr~DAWe~lk~eLe~--K~WIs~~e~ 31 (49)
T PF04839_consen 8 PREDAWEQLKNELES--KPWISEKER 31 (49)
T ss_dssp TTS-HHHHHHHHHHH--STTS-HHHH
T ss_pred CCCcHHHHHHHHHhc--CCCCCHHHH
Confidence 467899999999986 479888754
No 294
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.31 E-value=1.4e+02 Score=26.59 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=22.0
Q ss_pred HHHHHHHhhhhcC----CCceEEEEeCCCchHHHHHHH
Q psy11337 43 SLAIKCLTLINQR----PSCTNVIVITTQLIPALSKIM 76 (155)
Q Consensus 43 s~A~k~L~~i~~r----~~~vNVLVTt~qLVpaLaK~L 76 (155)
....++++.+... .+-.+|-|+|..++|.+.++.
T Consensus 176 ~~v~~~l~~l~~~~g~~~s~r~itvsT~G~~~~i~~l~ 213 (356)
T PRK14455 176 DNVMDFLRIINDDKGLAIGARHITVSTSGIAPKIYDFA 213 (356)
T ss_pred HHHHHHHHHHhcccCcccCCCceEEEecCchHhHHHHH
Confidence 4455555555443 123488899999999877764
No 295
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.26 E-value=3e+02 Score=22.04 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=30.2
Q ss_pred ccCccccccccChhhHHHHHHHHhCC-CceEEEecCCH
Q psy11337 85 DVENIYSSTKIGKDSCFERIVTRFGR-KCTYVVIGDGQ 121 (155)
Q Consensus 85 pieNIYSa~k~GKescFerI~~RFG~-k~~yvvIGDG~ 121 (155)
|-...|+++|-+=....+-+...+++ +++..+|--|.
T Consensus 154 ~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~ 191 (260)
T PRK06997 154 PNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGP 191 (260)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCc
Confidence 55667999999999999999999965 48888877773
No 296
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=28.85 E-value=71 Score=25.30 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=24.0
Q ss_pred CceEEEecCCHHHHHHHH---HcC----CceeEecccccHHHHHHHhh
Q psy11337 111 KCTYVVIGDGQDEEAAAK---QRN----FPFWRISSRSDLAALYHALD 151 (155)
Q Consensus 111 k~~yvvIGDG~eEe~aAk---~~~----~PFwrI~~~~Dl~~L~~al~ 151 (155)
++.++++|+|.++....+ +.+ +=|..--.++++..++.+.+
T Consensus 218 ~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad 265 (357)
T cd03795 218 DAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACD 265 (357)
T ss_pred CcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCC
Confidence 799999999976654332 333 22222223455677776554
No 297
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=28.76 E-value=1.3e+02 Score=24.64 Aligned_cols=45 Identities=16% Similarity=0.330 Sum_probs=35.0
Q ss_pred cccChhhHHHHHHHHhCC----CceEEEecCCHHHHHHHHHcCCceeEe
Q psy11337 93 TKIGKDSCFERIVTRFGR----KCTYVVIGDGQDEEAAAKQRNFPFWRI 137 (155)
Q Consensus 93 ~k~GKescFerI~~RFG~----k~~yvvIGDG~eEe~aAk~~~~PFwrI 137 (155)
..+.|.+..+++.+++|- .-..++|||+.---+-=+..+++|--=
T Consensus 184 ~g~sKg~al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~ag~gvAM~ 232 (271)
T PRK03669 184 ASAGKDQAANWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVMDYAVVVK 232 (271)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhCCEEEEec
Confidence 457899999999999985 678899999977766666666655443
No 298
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=28.71 E-value=1.1e+02 Score=22.56 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=24.0
Q ss_pred HHHHHHHh-CCCceEEEecCCHHHHHH--HHHcCCceeEe
Q psy11337 101 FERIVTRF-GRKCTYVVIGDGQDEEAA--AKQRNFPFWRI 137 (155)
Q Consensus 101 FerI~~RF-G~k~~yvvIGDG~eEe~a--Ak~~~~PFwrI 137 (155)
|.++.++| ++++.++.|.....++.+ +++++.||--+
T Consensus 53 l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l 92 (154)
T PRK09437 53 LRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLL 92 (154)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEE
Confidence 67788888 467888888776444332 35566665544
No 299
>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]. This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].
Probab=28.66 E-value=88 Score=21.05 Aligned_cols=38 Identities=24% Similarity=0.214 Sum_probs=27.3
Q ss_pred hHHHHHHHHhCCCceEEEecCCHHHHHHHHHcCCceeEe
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQDEEAAAKQRNFPFWRI 137 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~eEe~aAk~~~~PFwrI 137 (155)
.+|+++++.++.+ .=++|.|+......|=+.-+|-.++
T Consensus 44 ~~l~~~~~~~~~~-p~~ii~D~~~~~~~Ai~~vfP~~~~ 81 (93)
T PF10551_consen 44 WFLEKLKEAMPQK-PKVIISDFDKALINAIKEVFPDARH 81 (93)
T ss_pred HHHHHhhhccccC-ceeeeccccHHHHHHHHHHCCCceE
Confidence 4556666666555 6689999988887777777886554
No 300
>KOG3798|consensus
Probab=28.44 E-value=37 Score=30.73 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=23.2
Q ss_pred cccccccChh-hHHHHHHHHhCCCceEEEecCCH
Q psy11337 89 IYSSTKIGKD-SCFERIVTRFGRKCTYVVIGDGQ 121 (155)
Q Consensus 89 IYSa~k~GKe-scFerI~~RFG~k~~yvvIGDG~ 121 (155)
.|=|..+|=- .-|++|.+|||+ |.-.+|-=|.
T Consensus 233 fffaGDTGyc~~~F~~IgerfGp-fdLAaiPiGa 265 (343)
T KOG3798|consen 233 FFFAGDTGYCDGEFKKIGERFGP-FDLAAIPIGA 265 (343)
T ss_pred EEecCCCCcccHHHHHHHHhcCC-cceeeccccc
Confidence 3455566633 379999999999 8877776664
No 301
>PF14285 DUF4367: Domain of unknown function (DUF4367)
Probab=28.42 E-value=93 Score=23.09 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=39.6
Q ss_pred cChhhHHHHHHHHhCCCceEEEecCCHHHHHHHHHcCCceeEeccccc
Q psy11337 95 IGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSD 142 (155)
Q Consensus 95 ~GKescFerI~~RFG~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~D 142 (155)
-.+..||+.+.+-+|....|.+-.+..++++|.+..+++....+--|+
T Consensus 25 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~p~ylP~ 72 (168)
T PF14285_consen 25 AVREKVYNFIVEWFGDYTNISVENEDENEEEAQKEVGFKIYEPTYLPE 72 (168)
T ss_pred HHhHHHHhHHhhhcCCeEEEEEecCCCChhHHhhccCCceeeeeecCC
Confidence 347899999999999889999998887888888888888777665554
No 302
>PRK14099 glycogen synthase; Provisional
Probab=28.40 E-value=1.5e+02 Score=26.89 Aligned_cols=49 Identities=27% Similarity=0.316 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCCceEEEecCCHHH-HH----HHHHcCCce-eEecccccHHHHHHH-hh
Q psy11337 100 CFERIVTRFGRKCTYVVIGDGQDE-EA----AAKQRNFPF-WRISSRSDLAALYHA-LD 151 (155)
Q Consensus 100 cFerI~~RFG~k~~yvvIGDG~eE-e~----aAk~~~~PF-wrI~~~~Dl~~L~~a-l~ 151 (155)
+|+++.+ +++.+|++|+|.++ ++ .++++.-.+ ..+..+.++..++.| .|
T Consensus 316 A~~~l~~---~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aD 371 (485)
T PRK14099 316 ALPTLLG---EGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGAD 371 (485)
T ss_pred HHHHHHh---cCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCC
Confidence 4444443 46899999999642 11 233332222 345567788777653 44
No 303
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=28.32 E-value=80 Score=20.62 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=17.5
Q ss_pred hHHHHHHHHhCCCceEEEecCCHHHHHHHHHcCC
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQDEEAAAKQRNF 132 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~eEe~aAk~~~~ 132 (155)
..|+.+.++|+.++.|+.|--. +..+.+++++.
T Consensus 34 ~~l~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~v 66 (101)
T TIGR01068 34 PILEELAKEYEGKVKFVKLNVD-ENPDIAAKYGI 66 (101)
T ss_pred HHHHHHHHHhcCCeEEEEEECC-CCHHHHHHcCC
Confidence 3466666666666666666322 33334555443
No 304
>PRK05866 short chain dehydrogenase; Provisional
Probab=28.27 E-value=3.4e+02 Score=22.34 Aligned_cols=83 Identities=17% Similarity=0.124 Sum_probs=46.7
Q ss_pred HHHHHHHHhHHhhhHHHHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHH
Q psy11337 26 EWLQLRAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIV 105 (155)
Q Consensus 26 ~w~~lr~e~e~~Td~WLs~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~ 105 (155)
.|.+++..++.-.-+-...+..++.....+... .++.+++. . +.+...|-.+.|+++|.+=+.-.+-+.
T Consensus 139 ~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~--~--------~~~~~~p~~~~Y~asKaal~~l~~~la 207 (293)
T PRK05866 139 RWHDVERTMVLNYYAPLRLIRGLAPGMLERGDG-HIINVATW--G--------VLSEASPLFSVYNASKAALSAVSRVIE 207 (293)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-EEEEECCh--h--------hcCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 466666666665555555555566555444333 33333331 0 122234666899999988777777777
Q ss_pred HHhC-CCceEEEecC
Q psy11337 106 TRFG-RKCTYVVIGD 119 (155)
Q Consensus 106 ~RFG-~k~~yvvIGD 119 (155)
..++ .+++..+|--
T Consensus 208 ~e~~~~gI~v~~v~p 222 (293)
T PRK05866 208 TEWGDRGVHSTTLYY 222 (293)
T ss_pred HHhcccCcEEEEEEc
Confidence 7663 3455554443
No 305
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=28.15 E-value=62 Score=26.20 Aligned_cols=39 Identities=23% Similarity=0.447 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHh-CC-----CceEEEecCCHHHHH-HHHHcC-Ccee
Q psy11337 97 KDSCFERIVTRF-GR-----KCTYVVIGDGQDEEA-AAKQRN-FPFW 135 (155)
Q Consensus 97 KescFerI~~RF-G~-----k~~yvvIGDG~eEe~-aAk~~~-~PFw 135 (155)
|..||+.|.+.| .. .-.-|||||.-=+-- +|..|| |..|
T Consensus 116 KP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~til 162 (168)
T PF09419_consen 116 KPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTIL 162 (168)
T ss_pred CCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEE
No 306
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=28.00 E-value=71 Score=27.79 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=35.3
Q ss_pred ccccccc-----CccccccccCh----hhHHHHHHHHhCCCceEEEecCCHHH
Q psy11337 80 LSGIFDV-----ENIYSSTKIGK----DSCFERIVTRFGRKCTYVVIGDGQDE 123 (155)
Q Consensus 80 L~~~fpi-----eNIYSa~k~GK----escFerI~~RFG~k~~yvvIGDG~eE 123 (155)
+|.++|| .=|.|....|| .++.+++...|...|.|+.||-..+|
T Consensus 60 ID~l~pig~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~E 112 (274)
T cd01133 60 IDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTRE 112 (274)
T ss_pred eeccCCcccCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHH
Confidence 6778888 44899999998 45666777777667999999998776
No 307
>KOG1089|consensus
Probab=27.98 E-value=1.1e+02 Score=29.82 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHhh---hh--cCCCceEEEEe------CCCchHHHHHHHH
Q psy11337 38 TDNWLSLAIKCLTL---IN--QRPSCTNVIVI------TTQLIPALSKIML 77 (155)
Q Consensus 38 Td~WLs~A~k~L~~---i~--~r~~~vNVLVT------t~qLVpaLaK~LL 77 (155)
+-+||.+.+.||+- |. =..+.++|||= .|..|-+||++||
T Consensus 319 ~SgWL~~i~~~L~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQllL 369 (573)
T KOG1089|consen 319 SSGWLKHIRAILKAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLLL 369 (573)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHHh
Confidence 35899998888876 21 12455899985 4678999999997
No 308
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=27.95 E-value=2.2e+02 Score=20.10 Aligned_cols=16 Identities=6% Similarity=0.181 Sum_probs=6.7
Q ss_pred HHHHHh-CCCceEEEec
Q psy11337 103 RIVTRF-GRKCTYVVIG 118 (155)
Q Consensus 103 rI~~RF-G~k~~yvvIG 118 (155)
++.++| ++++.+|.|.
T Consensus 48 ~~~~~~~~~~~~vv~is 64 (140)
T cd03017 48 DLYEEFKALGAVVIGVS 64 (140)
T ss_pred HHHHHHHHCCCEEEEEc
Confidence 344444 2334444443
No 309
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=27.89 E-value=1.2e+02 Score=27.20 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=47.8
Q ss_pred EEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHHhCCCceEEEecCCHHH---------HHHHHHc
Q psy11337 60 NVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQDE---------EAAAKQR 130 (155)
Q Consensus 60 NVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RFG~k~~yvvIGDG~eE---------e~aAk~~ 130 (155)
.++|||+- .-++..-|.|.|+..- ...+.|....-|.+|.|+...|-.|- ++.|+.+
T Consensus 20 ~~~v~tgi-----------~psG~~HIG~~~e~i~---~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~ 85 (353)
T cd00674 20 KYVVASGI-----------SPSGHIHIGNFREVIT---ADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYI 85 (353)
T ss_pred eEEEecCC-----------CCCCCcccCccHHHHH---HHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhc
Confidence 48888872 2467888888886332 26666776677999999999998852 3389999
Q ss_pred CCceeEe
Q psy11337 131 NFPFWRI 137 (155)
Q Consensus 131 ~~PFwrI 137 (155)
|+|.=.|
T Consensus 86 G~pi~~i 92 (353)
T cd00674 86 GMPLSSV 92 (353)
T ss_pred Cccchhc
Confidence 9997766
No 310
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=27.62 E-value=60 Score=27.53 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCceEEEecCCHHHHHHHHH---cCCceeEecccccHHHHHHHhhc
Q psy11337 100 CFERIVTRFGRKCTYVVIGDGQDEEAAAKQ---RNFPFWRISSRSDLAALYHALDN 152 (155)
Q Consensus 100 cFerI~~RFG~k~~yvvIGDG~eEe~aAk~---~~~PFwrI~~~~Dl~~L~~al~~ 152 (155)
-+..+.++ .++.+|++||+|.+.++.++. -|+-|..--.+.++.+.+.+.|.
T Consensus 222 ll~~la~~-~p~~~~vliG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~Dv 276 (373)
T cd04950 222 LLEALAKA-RPDWSFVLIGPVDVSIDPSALLRLPNVHYLGPKPYKELPAYLAGFDV 276 (373)
T ss_pred HHHHHHHH-CCCCEEEEECCCcCccChhHhccCCCEEEeCCCCHHHHHHHHHhCCE
Confidence 34455544 378999999998222222333 33434433345677777766554
No 311
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=27.46 E-value=2.2e+02 Score=20.53 Aligned_cols=91 Identities=12% Similarity=0.247 Sum_probs=49.0
Q ss_pred ceEEEEeCCCc-hHHHHHHHHhhcccc---cccCccccccccChhhHHHHHHHHh-CCCceEEEecCCHHH---------
Q psy11337 58 CTNVIVITTQL-IPALSKIMLFGLSGI---FDVENIYSSTKIGKDSCFERIVTRF-GRKCTYVVIGDGQDE--------- 123 (155)
Q Consensus 58 ~vNVLVTt~qL-VpaLaK~LLygL~~~---fpieNIYSa~k~GKescFerI~~RF-G~k~~yvvIGDG~eE--------- 123 (155)
.+++.=|.||- -.++-+..+-+.+.+ |.+.+..|.... ....++|.... .++.-.++||.-.|.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~--~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 127 (164)
T cd04175 50 MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDL--QDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKE 127 (164)
T ss_pred EEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHH--HHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHH
Confidence 34566777763 233444443333332 222222222111 23556666554 467788898844331
Q ss_pred --HHHHHHcCCceeEecccc--cHHHHHHHh
Q psy11337 124 --EAAAKQRNFPFWRISSRS--DLAALYHAL 150 (155)
Q Consensus 124 --e~aAk~~~~PFwrI~~~~--Dl~~L~~al 150 (155)
++.++++++||..+|+.. .+..+..++
T Consensus 128 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 158 (164)
T cd04175 128 QGQNLARQWGCAFLETSAKAKINVNEIFYDL 158 (164)
T ss_pred HHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 346788999999999844 355554443
No 312
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=27.41 E-value=2.9e+02 Score=21.32 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=43.9
Q ss_pred HHHhHHhhhHHHHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHHh-C
Q psy11337 31 RAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRF-G 109 (155)
Q Consensus 31 r~e~e~~Td~WLs~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RF-G 109 (155)
...++....+-+..+..+++......+.-.|+.+|+. .+. .-.|..+.|+++|.+=+...+-+.+++ +
T Consensus 109 ~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~----------~~~-~~~~~~~~y~~sk~a~~~~~~~la~~~~~ 177 (262)
T PRK13394 109 KKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSV----------HSH-EASPLKSAYVTAKHGLLGLARVLAKEGAK 177 (262)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcch----------hhc-CCCCCCcccHHHHHHHHHHHHHHHHHhhh
Confidence 3334444444444555666665222233345545442 111 123566899999987666667777777 4
Q ss_pred CCceEEEecCC
Q psy11337 110 RKCTYVVIGDG 120 (155)
Q Consensus 110 ~k~~yvvIGDG 120 (155)
++.+.++|--|
T Consensus 178 ~~i~v~~v~pg 188 (262)
T PRK13394 178 HNVRSHVVCPG 188 (262)
T ss_pred cCeEEEEEeeC
Confidence 56777776544
No 313
>PRK04148 hypothetical protein; Provisional
Probab=27.25 E-value=2.2e+02 Score=22.35 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=32.3
Q ss_pred hHHHHHHHHhC--CCceEEEecCCH--HHHHHHHHcCCceeEecccccH
Q psy11337 99 SCFERIVTRFG--RKCTYVVIGDGQ--DEEAAAKQRNFPFWRISSRSDL 143 (155)
Q Consensus 99 scFerI~~RFG--~k~~yvvIGDG~--eEe~aAk~~~~PFwrI~~~~Dl 143 (155)
.+.+.|.++++ ++-++++||-|. +=...-+++|....-|+.+++.
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~a 51 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKA 51 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHH
Confidence 56788888884 335688888774 3444556788888888888874
No 314
>PRK08251 short chain dehydrogenase; Provisional
Probab=27.17 E-value=2.9e+02 Score=21.26 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=27.0
Q ss_pred CccccccccChhhHHHHHHHHhC-CCceEEEecCCH
Q psy11337 87 ENIYSSTKIGKDSCFERIVTRFG-RKCTYVVIGDGQ 121 (155)
Q Consensus 87 eNIYSa~k~GKescFerI~~RFG-~k~~yvvIGDG~ 121 (155)
.+.|+++|.+=++-.+.....++ .+++.++|.-|.
T Consensus 151 ~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~ 186 (248)
T PRK08251 151 KAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGY 186 (248)
T ss_pred cccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCc
Confidence 36799999888888888888884 567777776665
No 315
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=27.15 E-value=90 Score=31.84 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=27.8
Q ss_pred hhHHHHHHHHh----C--CCceEEEecC-CHHHHHHHHHcCCc
Q psy11337 98 DSCFERIVTRF----G--RKCTYVVIGD-GQDEEAAAKQRNFP 133 (155)
Q Consensus 98 escFerI~~RF----G--~k~~yvvIGD-G~eEe~aAk~~~~P 133 (155)
.++|+.+++.| | ++.++|+|.| |..=++.|+++|+|
T Consensus 524 ~sa~~~~~~~l~~~~g~~~~~~~VaVTdpgs~L~~~A~~~G~~ 566 (948)
T PRK09533 524 NIFKDYFFARVKEVLGAKAGRHFVAVTDPGSSLEKVAKEDGFR 566 (948)
T ss_pred HHHHHHHHHHhhhhcccccCCeEEEEeCCCChHHHHHHHcCCe
Confidence 46888887666 4 4678999998 54567789999998
No 316
>KOG3996|consensus
Probab=27.07 E-value=50 Score=28.99 Aligned_cols=46 Identities=30% Similarity=0.530 Sum_probs=35.9
Q ss_pred HHHHHHHhCCCceEEEe-cCCHHHHHHHHHcCCceeEecccccHHHHHHHhh
Q psy11337 101 FERIVTRFGRKCTYVVI-GDGQDEEAAAKQRNFPFWRISSRSDLAALYHALD 151 (155)
Q Consensus 101 FerI~~RFG~k~~yvvI-GDG~eEe~aAk~~~~PFwrI~~~~Dl~~L~~al~ 151 (155)
-.||+.|-|+.|+||+= =||.+-. -+.||.-++-+|-|.+++.+-+
T Consensus 196 HDWiV~Rcgk~VrYVIDyY~g~~v~-----~~~p~~~LDVRPaldS~~~~wd 242 (256)
T KOG3996|consen 196 HDWIVDRCGKEVRYVIDYYDGPDVD-----KGKPFIYLDVRPALDSFENVWD 242 (256)
T ss_pred hhhhhhcCCceEEEEEEeccCCccc-----CCCeeEEEecccccchhHHHHH
Confidence 36999999999999973 2333322 6899999999999998887654
No 317
>PRK08339 short chain dehydrogenase; Provisional
Probab=27.01 E-value=3.3e+02 Score=21.78 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhHHhhhHHHHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHH
Q psy11337 24 REEWLQLRAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFER 103 (155)
Q Consensus 24 r~~w~~lr~e~e~~Td~WLs~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFer 103 (155)
.++|.+. ++....+-+..++.++.....+.... |+.+|+.-. . .-.|---.|+++|-+-+...+.
T Consensus 106 ~~~~~~~---~~~n~~~~~~~~~~~l~~m~~~~~g~-Ii~isS~~~----------~-~~~~~~~~y~asKaal~~l~~~ 170 (263)
T PRK08339 106 MEDWEGA---VKLLLYPAVYLTRALVPAMERKGFGR-IIYSTSVAI----------K-EPIPNIALSNVVRISMAGLVRT 170 (263)
T ss_pred HHHHHHH---HHHHhHHHHHHHHHHHHHHHHcCCCE-EEEEcCccc----------c-CCCCcchhhHHHHHHHHHHHHH
Confidence 3455443 33333344445566666664443333 333333211 0 1123344799999999999999
Q ss_pred HHHHhCC-CceEEEecCC
Q psy11337 104 IVTRFGR-KCTYVVIGDG 120 (155)
Q Consensus 104 I~~RFG~-k~~yvvIGDG 120 (155)
+...+++ +++..+|--|
T Consensus 171 la~el~~~gIrVn~v~PG 188 (263)
T PRK08339 171 LAKELGPKGITVNGIMPG 188 (263)
T ss_pred HHHHhcccCeEEEEEEeC
Confidence 9999975 4887777655
No 318
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=26.95 E-value=73 Score=28.49 Aligned_cols=44 Identities=20% Similarity=0.456 Sum_probs=35.1
Q ss_pred hHHHHHHHHh--C-CCc-eEEEecCCHHHHHHHHHcCCceeEeccccc
Q psy11337 99 SCFERIVTRF--G-RKC-TYVVIGDGQDEEAAAKQRNFPFWRISSRSD 142 (155)
Q Consensus 99 scFerI~~RF--G-~k~-~yvvIGDG~eEe~aAk~~~~PFwrI~~~~D 142 (155)
.|+.-+.=|. | -.+ -=.|||...|=+.-|..+++||..|...++
T Consensus 102 HCL~DLL~r~~~g~L~~eI~~VIsNH~dl~~~v~~~~IPfhhip~~~~ 149 (287)
T COG0788 102 HCLGDLLYRWRIGELPAEIVAVISNHDDLRPLVERFDIPFHHIPVTKE 149 (287)
T ss_pred HHHHHHHHHHhcCCcCCceEEEEcCCHHHHHHHHHcCCCeeeccCCCC
Confidence 7888777553 4 333 346788898889999999999999999887
No 319
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=26.83 E-value=2.7e+02 Score=22.43 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=27.2
Q ss_pred hHHHHHHHHh--CCCceEEEecCC------HHHHHHHHHcCCceeEe
Q psy11337 99 SCFERIVTRF--GRKCTYVVIGDG------QDEEAAAKQRNFPFWRI 137 (155)
Q Consensus 99 scFerI~~RF--G~k~~yvvIGDG------~eEe~aAk~~~~PFwrI 137 (155)
+..+.|.+.. |+++.++++||- ....+..++.+.++--|
T Consensus 78 ~~~~~i~~~~~~g~~V~~l~~GDP~~y~~~~~l~~~~~~~~~~v~vi 124 (229)
T PRK05576 78 ENAEEIAAEAEEGKNVAFITLGDPNLYSTFSHLLEYLKCHDIEVETV 124 (229)
T ss_pred HHHHHHHHHHHcCCcEEEEeCcCccccccHHHHHHHHHhCCCCEEEe
Confidence 4567787654 899999999997 46666666666654333
No 320
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=26.78 E-value=32 Score=23.79 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=13.7
Q ss_pred hCCCceEEEecCCHHHHHHHHHc
Q psy11337 108 FGRKCTYVVIGDGQDEEAAAKQR 130 (155)
Q Consensus 108 FG~k~~yvvIGDG~eEe~aAk~~ 130 (155)
.|.++++. .+|.||++|.+++
T Consensus 57 ~G~~i~i~--~~G~de~~a~~~i 77 (84)
T PF00381_consen 57 KGDEIEIE--AEGEDEEEALEAI 77 (84)
T ss_dssp TTEEEEEE--EESTTHHHHHHHH
T ss_pred CCCEEEEE--EECcCHHHHHHHH
Confidence 34555544 4777888887764
No 321
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=26.70 E-value=5.4e+02 Score=24.19 Aligned_cols=115 Identities=12% Similarity=0.090 Sum_probs=60.2
Q ss_pred CChhhHHHHHHHHHH-------hHHhhhHHHHHHHHHHhhhhcCCCce-EEEEeCCCchHHHHHHHHhhcccccccCccc
Q psy11337 19 LGPAKREEWLQLRAE-------IESVTDNWLSLAIKCLTLINQRPSCT-NVIVITTQLIPALSKIMLFGLSGIFDVENIY 90 (155)
Q Consensus 19 l~~~~r~~w~~lr~e-------~e~~Td~WLs~A~k~L~~i~~r~~~v-NVLVTt~qLVpaLaK~LLygL~~~fpieNIY 90 (155)
+|-..-+.|+.--++ .|.+-.......+.-|+-...+-.-- -+|.+-+.++-++++.|.=.||- |=+-
T Consensus 282 ~Gi~~Td~~Lr~la~~~g~~~~~e~~I~~e~~~~r~~Ld~~~~~L~GKrvai~~gg~~~~~~~~~l~~ElGm----evv~ 357 (513)
T TIGR01861 282 FGFEPLAASLRKVAMFFGIEDEAQAIIDEETARWKPELDWYKERLKGKKVCLWPGGSKLWHWAHVIEEEMGL----KVVS 357 (513)
T ss_pred CCHHHHHHHHHHHHHHhCCChhHhHhhHHHHHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHhCCC----EEEE
Confidence 455555555543322 22233333334444444443443333 44555688999999999844443 2233
Q ss_pred cccccChhhHHHHHHHHhCCCceE-------------------EEecCCHHHHHHHHHcCCceeEec
Q psy11337 91 SSTKIGKDSCFERIVTRFGRKCTY-------------------VVIGDGQDEEAAAKQRNFPFWRIS 138 (155)
Q Consensus 91 Sa~k~GKescFerI~~RFG~k~~y-------------------vvIGDG~eEe~aAk~~~~PFwrI~ 138 (155)
..++.++..=|++++++-|..... ++||.+ -+...|+++++||.++.
T Consensus 358 ~~t~~~~~~d~~~~~~~~~~~~~~i~D~~~~e~~~~l~~~~~Dllig~s-~~~~~A~k~gIP~ld~~ 423 (513)
T TIGR01861 358 VYSKFGHQGDMEKGVARCGEGALAIDDPNELEGLEAMEMLKPDIILTGK-RPGEVSKKMRVPYLNAH 423 (513)
T ss_pred EeccCCCHHHHHHHHHhCCCCcEEecCCCHHHHHHHHHhcCCCEEEecC-ccchhHhhcCCCEEEcc
Confidence 344444444455555555433111 233444 34578999999998763
No 322
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=26.58 E-value=2.6e+02 Score=20.69 Aligned_cols=43 Identities=16% Similarity=0.328 Sum_probs=28.5
Q ss_pred hHHHHHHHHhCCCceEEEecCCHHH---------HHHHHHcCCceeEecccc
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQDE---------EAAAKQRNFPFWRISSRS 141 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~eE---------e~aAk~~~~PFwrI~~~~ 141 (155)
..++.+..+-+++..-++|+||.+. .+.++..+++.+-|....
T Consensus 91 ~a~~~l~~~~~~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig~ 142 (180)
T cd01467 91 LAIKRLKNSEAKERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGK 142 (180)
T ss_pred HHHHHHHhcCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecC
Confidence 3445555545666788999999531 223567799998888754
No 323
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.30 E-value=3e+02 Score=21.02 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=28.8
Q ss_pred ccCccccccccChhhHHHHHHHHh-CCCceEEEecCC
Q psy11337 85 DVENIYSSTKIGKDSCFERIVTRF-GRKCTYVVIGDG 120 (155)
Q Consensus 85 pieNIYSa~k~GKescFerI~~RF-G~k~~yvvIGDG 120 (155)
|-...|+++|.+-+..++.+...+ .++..+++|.-|
T Consensus 145 ~~~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg 181 (238)
T PRK05786 145 PDQLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPT 181 (238)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecC
Confidence 445569999999999999999888 456777777766
No 324
>PF08080 zf-RNPHF: RNPHF zinc finger; InterPro: IPR012996 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc-binding domain (CHHC motif) in RNP H and F. The domain is often associated with IPR000504 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WEZ_A 2KG1_A.
Probab=26.24 E-value=22 Score=22.80 Aligned_cols=13 Identities=46% Similarity=0.928 Sum_probs=0.0
Q ss_pred HHhCCCceEEEec
Q psy11337 106 TRFGRKCTYVVIG 118 (155)
Q Consensus 106 ~RFG~k~~yvvIG 118 (155)
.||||.+.||.-|
T Consensus 4 d~FGRd~~~c~sg 16 (36)
T PF08080_consen 4 DRFGRDLSYCFSG 16 (36)
T ss_dssp -------------
T ss_pred chhcchhhHhhcc
Confidence 6999999999864
No 325
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=25.86 E-value=1.2e+02 Score=22.75 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=28.9
Q ss_pred hhHHHHHHHHhC---CCceEEEecCCHHHH----HHHHHcCCceeEecc
Q psy11337 98 DSCFERIVTRFG---RKCTYVVIGDGQDEE----AAAKQRNFPFWRISS 139 (155)
Q Consensus 98 escFerI~~RFG---~k~~yvvIGDG~eEe----~aAk~~~~PFwrI~~ 139 (155)
+.++++..++.| +.+..++.-|...+| ++|+++|+||.-++.
T Consensus 18 ~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l~~~~~~~~~ 66 (121)
T PF01890_consen 18 EEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEELGIPLRFFSA 66 (121)
T ss_dssp HHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHCTSEEEEE-H
T ss_pred HHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHhCCCeEEECH
Confidence 356667777765 357778877777665 589999999987753
No 326
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=25.80 E-value=29 Score=30.66 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=27.2
Q ss_pred CCCCcchhhhhhcccccCChhhHHHHHHHHHHh
Q psy11337 2 SVPPPNETTARLDACGLLGPAKREEWLQLRAEI 34 (155)
Q Consensus 2 ~~~~~~y~~Y~~nv~~Ll~~~~r~~w~~lr~e~ 34 (155)
.||+|+|+.|+..+.. |....++|..+.++.
T Consensus 282 ~V~~eV~~~f~~~~~~--g~~~~~~W~~~~~~y 312 (332)
T PF00456_consen 282 EVPEEVYDHFRERIAE--GAKAEAEWKELFAAY 312 (332)
T ss_dssp CGCHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhhhh--HHHHHHHHHHHHHHH
Confidence 4899999999999988 899999999988744
No 327
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=25.48 E-value=43 Score=28.96 Aligned_cols=16 Identities=38% Similarity=0.704 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHhhh
Q psy11337 37 VTDNWLSLAIKCLTLI 52 (155)
Q Consensus 37 ~Td~WLs~A~k~L~~i 52 (155)
-.|.|+++|++||+.-
T Consensus 67 ~~~~Wl~aA~~CLe~~ 82 (235)
T cd04405 67 QLDHWLLSAMDCLANW 82 (235)
T ss_pred cCcHHHHHHHHHHHhC
Confidence 5689999999999975
No 328
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=25.29 E-value=57 Score=28.95 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=21.7
Q ss_pred HHHHHHhCCCceEEEecCCHHHHHHHH
Q psy11337 102 ERIVTRFGRKCTYVVIGDGQDEEAAAK 128 (155)
Q Consensus 102 erI~~RFG~k~~yvvIGDG~eEe~aAk 128 (155)
+++++|||=+=..||-+|+.++...-+
T Consensus 72 ~~L~~~fgL~~a~VVp~~~~~~~~~~~ 98 (321)
T COG2390 72 QQLKERFGLKEAIVVPSDSDADDSILR 98 (321)
T ss_pred HHHHHhcCCCeEEEEcCCCCCchHHHH
Confidence 799999999988999998766555444
No 329
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=25.28 E-value=1.9e+02 Score=21.67 Aligned_cols=51 Identities=12% Similarity=0.272 Sum_probs=29.8
Q ss_pred hHHHHHHHH---hC-CCceEEEecCCHHH----------H---HHHHHcCCceeEecccc--cHHHHHHH
Q psy11337 99 SCFERIVTR---FG-RKCTYVVIGDGQDE----------E---AAAKQRNFPFWRISSRS--DLAALYHA 149 (155)
Q Consensus 99 scFerI~~R---FG-~k~~yvvIGDG~eE----------e---~aAk~~~~PFwrI~~~~--Dl~~L~~a 149 (155)
.+-+|+.+. .. .+..+++||.-.|- + +.+++++.||+.+|+.. .+..+..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~ 159 (170)
T cd04108 90 HTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFR 159 (170)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 344555442 22 33457888865442 1 34677889999999754 35554443
No 330
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.18 E-value=3.7e+02 Score=24.04 Aligned_cols=79 Identities=11% Similarity=0.190 Sum_probs=44.5
Q ss_pred HHHHHHhhhhcCC----CceEEEEeCCCchHHHHHHHH----hhcccc--cccCcccccc-----ccChhhHHHHHH---
Q psy11337 44 LAIKCLTLINQRP----SCTNVIVITTQLIPALSKIML----FGLSGI--FDVENIYSST-----KIGKDSCFERIV--- 105 (155)
Q Consensus 44 ~A~k~L~~i~~r~----~~vNVLVTt~qLVpaLaK~LL----ygL~~~--fpieNIYSa~-----k~GKescFerI~--- 105 (155)
...+++..++.+. ...+|-|||-.++|.+-++.- +.|.-. =|-+..|+.. +-+-+..++-+.
T Consensus 170 ~V~~~~~~l~~~~~~~~~~r~itvST~G~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~ 249 (342)
T PRK14465 170 NVIRAASILHDPDAFNLGAKRITISTSGVVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFT 249 (342)
T ss_pred HHHHHHHHHhChhhhcCCCCeEEEeCCCchHHHHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHH
Confidence 3455566565542 356999999999999988763 122111 1223344433 222244444443
Q ss_pred HHhCCCce--EEEecCCHH
Q psy11337 106 TRFGRKCT--YVVIGDGQD 122 (155)
Q Consensus 106 ~RFG~k~~--yvvIGDG~e 122 (155)
++.|++++ ||+|-+=-|
T Consensus 250 ~~~~r~v~ieyvLI~GvND 268 (342)
T PRK14465 250 RELKRRITFEYVMIPGVNM 268 (342)
T ss_pred HHcCCEEEEEEEEECCccC
Confidence 46688866 999754433
No 331
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=25.03 E-value=58 Score=27.13 Aligned_cols=49 Identities=12% Similarity=0.164 Sum_probs=41.4
Q ss_pred ChhhHHHHHHHHhCCC-ceEEEecCCHHHHHHHHHcCCceeEecccccHH
Q psy11337 96 GKDSCFERIVTRFGRK-CTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLA 144 (155)
Q Consensus 96 GKescFerI~~RFG~k-~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~ 144 (155)
-|++||+.|+++.+-. -.-..|||-.-.--+-++-++||-.-+.||.+.
T Consensus 83 dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm~~vGls~a~~dAh~~v~ 132 (170)
T COG1778 83 DKLAAFEELLKKLNLDPEEVAYVGDDLVDLPVMEKVGLSVAVADAHPLLK 132 (170)
T ss_pred hHHHHHHHHHHHhCCCHHHhhhhcCccccHHHHHHcCCcccccccCHHHH
Confidence 4999999999999754 233457998888889999999999999999876
No 332
>PLN00164 glucosyltransferase; Provisional
Probab=24.96 E-value=1.5e+02 Score=27.10 Aligned_cols=44 Identities=14% Similarity=0.340 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHhCCCceEEEecCC-------HHH-HHHHHHcCCce-eEeccc
Q psy11337 97 KDSCFERIVTRFGRKCTYVVIGDG-------QDE-EAAAKQRNFPF-WRISSR 140 (155)
Q Consensus 97 KescFerI~~RFG~k~~yvvIGDG-------~eE-e~aAk~~~~PF-wrI~~~ 140 (155)
-++|.+|+-++=-+.+.||.-|.. .+| ..|-+..+.|| |.+...
T Consensus 259 ~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~ 311 (480)
T PLN00164 259 PHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGP 311 (480)
T ss_pred hHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 467999998865567999999974 111 12445678997 788754
No 333
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=24.93 E-value=1.4e+02 Score=25.69 Aligned_cols=51 Identities=24% Similarity=0.232 Sum_probs=37.7
Q ss_pred ccCccccccccChhhHHHHHHHHhCCCceEEEecCCHHHH--HHHHHcCCceeEeccc
Q psy11337 85 DVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQDEE--AAAKQRNFPFWRISSR 140 (155)
Q Consensus 85 pieNIYSa~k~GKescFerI~~RFG~k~~yvvIGDG~eEe--~aAk~~~~PFwrI~~~ 140 (155)
|++|++++ ....++|.++++++...|.+..|.-.- .-|+.+|.||--+.-+
T Consensus 139 p~~~l~a~-----~~l~~~i~~~~~~~~viv~pd~g~~~~A~~lA~~Lg~~~~~i~k~ 191 (308)
T TIGR01251 139 PVDNLYAS-----PVLAEYLKKKILDNPVVVSPDAGGVERAKKVADALGCPLAIIDKR 191 (308)
T ss_pred ceecccCH-----HHHHHHHHhhCCCCCEEEEECCchHHHHHHHHHHhCCCEEEEEEE
Confidence 45666654 355788888878888888888887654 4789999999866543
No 334
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=24.91 E-value=1.7e+02 Score=25.19 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=48.3
Q ss_pred HhhhHHHHHHHHHHhh------hhcCCCceEEEEe--CCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHH
Q psy11337 36 SVTDNWLSLAIKCLTL------INQRPSCTNVIVI--TTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTR 107 (155)
Q Consensus 36 ~~Td~WLs~A~k~L~~------i~~r~~~vNVLVT--t~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~R 107 (155)
.-++.|...+.++|+. |.+|...-|+=++ .+.+-..++.-++=+ +|+|++- ++.---+-++|...|
T Consensus 131 ~~~~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~~----l~~ekli--fEAp~k~~q~~~I~~ 204 (237)
T TIGR03849 131 LTPDDRIKLINKDLEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAEN----VDINKVI--FEAPQKNQQVEFILK 204 (237)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHhh----CChhcEE--EECCCHHHHHHHHHH
Confidence 3468899999999987 6888776554333 344555444433333 5566652 333445679999999
Q ss_pred hCCCceE
Q psy11337 108 FGRKCTY 114 (155)
Q Consensus 108 FG~k~~y 114 (155)
||++|--
T Consensus 205 ~G~~VNL 211 (237)
T TIGR03849 205 FGPDVNL 211 (237)
T ss_pred hCCCccc
Confidence 9999983
No 335
>PF07023 DUF1315: Protein of unknown function (DUF1315); InterPro: IPR009749 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=24.90 E-value=46 Score=25.15 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=25.9
Q ss_pred CCCCcchhhhhhccc-------ccCChhhHHHHHHHHH
Q psy11337 2 SVPPPNETTARLDAC-------GLLGPAKREEWLQLRA 32 (155)
Q Consensus 2 ~~~~~~y~~Y~~nv~-------~Ll~~~~r~~w~~lr~ 32 (155)
+++||+|...+..|+ ..|.+++|+.-+|+-.
T Consensus 7 ~mtPevY~rL~~AVElGKWpDG~~LT~eQre~~mQaVm 44 (93)
T PF07023_consen 7 SMTPEVYERLKQAVELGKWPDGRALTPEQRESCMQAVM 44 (93)
T ss_pred hCCHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHH
Confidence 578999999999884 6889999998887754
No 336
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=24.78 E-value=67 Score=22.44 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=15.8
Q ss_pred EEEecCCHHHHHHHHHcCC
Q psy11337 114 YVVIGDGQDEEAAAKQRNF 132 (155)
Q Consensus 114 yvvIGDG~eEe~aAk~~~~ 132 (155)
||+|-|- |+.+.||+||+
T Consensus 33 ~viI~dP-e~S~IAk~l~i 50 (61)
T PRK08351 33 LVIIIDV-ENSRIAKKLGA 50 (61)
T ss_pred EEEEeCC-cHhHHHHHhCC
Confidence 8999986 78889999987
No 337
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=24.67 E-value=4.5e+02 Score=22.59 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=16.4
Q ss_pred EEecCCHHHHHHHHHcCCceeEecc
Q psy11337 115 VVIGDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 115 vvIGDG~eEe~aAk~~~~PFwrI~~ 139 (155)
+++|++. |...|++++.||.+++.
T Consensus 344 l~ig~~~-~~~~a~~~~~~~~~~~~ 367 (398)
T PF00148_consen 344 LLIGSSH-ERYLAKKLGIPLIRIGF 367 (398)
T ss_dssp EEEESHH-HHHHHHHTT--EEE-SS
T ss_pred EEEechh-hHHHHHHhCCCeEEEeC
Confidence 5678776 78888999888877766
No 338
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=24.65 E-value=38 Score=31.25 Aligned_cols=25 Identities=32% Similarity=0.443 Sum_probs=18.9
Q ss_pred ceEEEecCCHHHHH--HHHHcCCceeE
Q psy11337 112 CTYVVIGDGQDEEA--AAKQRNFPFWR 136 (155)
Q Consensus 112 ~~yvvIGDG~eEe~--aAk~~~~PFwr 136 (155)
+..||||||.-|.. ||-.+.--||.
T Consensus 160 iv~~vvGDGEaETGplA~sWh~~kfln 186 (379)
T PF09364_consen 160 IVACVVGDGEAETGPLAASWHSNKFLN 186 (379)
T ss_dssp EEEEEEETTGGGSHHHHHHGGGGGSS-
T ss_pred EEEEEecCCcccCCcccccccccceeC
Confidence 67899999987776 77776666664
No 339
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=24.54 E-value=94 Score=30.73 Aligned_cols=40 Identities=30% Similarity=0.449 Sum_probs=34.6
Q ss_pred hhHHHHHHHHhCCCce---EEEecCCHHHHHHHHHcC----CceeEe
Q psy11337 98 DSCFERIVTRFGRKCT---YVVIGDGQDEEAAAKQRN----FPFWRI 137 (155)
Q Consensus 98 escFerI~~RFG~k~~---yvvIGDG~eEe~aAk~~~----~PFwrI 137 (155)
++..|.|++-|++|++ -+|.|.+.-=|+|||..+ .||++=
T Consensus 513 l~~le~iq~~fnkkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pG 559 (730)
T COG0376 513 LAVLEKIQKEFNKKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPG 559 (730)
T ss_pred HHHHHHHHHHhcCccchhHheeecchHHHHHHHHhcCceeeeccCCC
Confidence 6789999999999976 589999999999999986 588754
No 340
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=24.37 E-value=5.5e+02 Score=23.41 Aligned_cols=113 Identities=18% Similarity=0.138 Sum_probs=54.5
Q ss_pred CChhhHHHHHHHHHH-------hHHhhhHHHHHHHHHHhhhhcCCCceE-EEEeCCCchHHHHHHHHhhcccccccCccc
Q psy11337 19 LGPAKREEWLQLRAE-------IESVTDNWLSLAIKCLTLINQRPSCTN-VIVITTQLIPALSKIMLFGLSGIFDVENIY 90 (155)
Q Consensus 19 l~~~~r~~w~~lr~e-------~e~~Td~WLs~A~k~L~~i~~r~~~vN-VLVTt~qLVpaLaK~LLygL~~~fpieNIY 90 (155)
+|...-+.|++--++ .|.+.+.....+..-|+....+-.-.- ++.+-+..+=++++.|.=.||--+-. +.
T Consensus 279 ~G~~~T~~~l~~ia~~~g~~~~~e~~i~~~~~~~~~~ld~~~~~L~GkrvaI~~~~~~~~~l~~~l~~ElGmevv~--~~ 356 (457)
T TIGR01284 279 FGFEYCAKNLRKIGEFFGIEERAERVIEEEMAKWKPELDWYKERLRGKKVWVWSGGPKLWHWPRPLEDELGMEVVA--VS 356 (457)
T ss_pred CCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHhCCCEEEE--EE
Confidence 555555555533322 233334444444444443323322223 44566778889999987444433222 11
Q ss_pred cccccChhhHHHHHHHHh----------------------CCCceEEEecCCHHHHHHHHHcCCceeEecc
Q psy11337 91 SSTKIGKDSCFERIVTRF----------------------GRKCTYVVIGDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 91 Sa~k~GKescFerI~~RF----------------------G~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~ 139 (155)
+..+...=++++.++. ++.. +||.. -|...|++++.||.++..
T Consensus 357 --~~~~~~~~~~~~~~~~~~~~~~i~d~~~~e~~~~i~~~~pDl---lig~~-~~~~~a~k~gip~~~~~~ 421 (457)
T TIGR01284 357 --TKFGHEDDYEKIIARVREGTVIIDDPNELELEEIIEKYKPDI---ILTGI-REGELAKKLGVPYINIHS 421 (457)
T ss_pred --EEeCCHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHhcCCCE---EEecC-CcchhhhhcCCCEEEccc
Confidence 1111122223344443 2222 33444 234578899999999843
No 341
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.30 E-value=99 Score=21.81 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=21.2
Q ss_pred HHHHHHHHcCCceeEecccccHHHHHHHhh
Q psy11337 122 DEEAAAKQRNFPFWRISSRSDLAALYHALD 151 (155)
Q Consensus 122 eEe~aAk~~~~PFwrI~~~~Dl~~L~~al~ 151 (155)
.=.+.||+.+.||+...+. .+.+|..+|+
T Consensus 66 ~vk~~akk~~ip~~~~~~~-~~~~l~~~l~ 94 (97)
T PF10087_consen 66 KVKKAAKKYGIPIIYSRSR-GVSSLERALE 94 (97)
T ss_pred HHHHHHHHcCCcEEEECCC-CHHHHHHHHH
Confidence 3456899999999998654 3557777765
No 342
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=24.16 E-value=2.8e+02 Score=22.24 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=39.0
Q ss_pred HHHHHHHhhcccccccCccc---cccccChhhHHHHHHHHhCCCceEEEecCCHHHHHHHHHcCCceeEecc
Q psy11337 71 ALSKIMLFGLSGIFDVENIY---SSTKIGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 71 aLaK~LLygL~~~fpieNIY---Sa~k~GKescFerI~~RFG~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~ 139 (155)
-+|+++..-|..-.+..++| +.-.+-=.+..+.|.+..|+++.|+-|.+. |=++..++.++|.|-+..
T Consensus 173 Dva~~~~~~l~~~~~~~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~~~-~~~~~l~~~g~~~~~~~~ 243 (285)
T TIGR03649 173 DIARVAYRALTDKVAPNTDYVVLGPELLTYDDVAEILSRVLGRKITHVKLTEE-ELAQRLQSFGMPEDLARM 243 (285)
T ss_pred HHHHHHHHHhcCCCcCCCeEEeeCCccCCHHHHHHHHHHHhCCceEEEeCCHH-HHHHHHHHcCCCHHHHHH
Confidence 34555544444322233333 322344456777777888999999887663 223344557888765553
No 343
>TIGR01338 phycocy_alpha phycocyanin, alpha subunit. This model excludes the closely related phycoerythrocyanin alpha subunit.
Probab=24.05 E-value=23 Score=28.77 Aligned_cols=52 Identities=25% Similarity=0.323 Sum_probs=36.6
Q ss_pred chHHHHHHHHhhcc-cccccCccccccccChhhHHHHHHHHhCCCceEE-EecCC
Q psy11337 68 LIPALSKIMLFGLS-GIFDVENIYSSTKIGKDSCFERIVTRFGRKCTYV-VIGDG 120 (155)
Q Consensus 68 LVpaLaK~LLygL~-~~fpieNIYSa~k~GKescFerI~~RFG~k~~yv-vIGDG 120 (155)
+|-..++-|.=..- -.=|=+|-|.+.+.||..|.+ -+.-|=|-+||+ |.||-
T Consensus 50 IV~~Aa~~lf~~~P~~~~pgGn~y~~~~~~~aaClR-D~~~yLR~itY~lvAGd~ 103 (161)
T TIGR01338 50 LISGAAQAVYSKFPYTTQMNGPNYASTATGKAKCAR-DIGYYLRMVTYCLVVGGT 103 (161)
T ss_pred HHHHHHHHHHHhCcCcCCCCCCCccchhhHHHHHHH-HHHHHHHHHHHHhhcCCC
Confidence 45555555544332 334569999999999999997 567777899995 44553
No 344
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=24.03 E-value=1.8e+02 Score=18.69 Aligned_cols=23 Identities=9% Similarity=0.131 Sum_probs=16.8
Q ss_pred hHHHHHHHHhC-CCceEEEecCCH
Q psy11337 99 SCFERIVTRFG-RKCTYVVIGDGQ 121 (155)
Q Consensus 99 scFerI~~RFG-~k~~yvvIGDG~ 121 (155)
.=+..+.++|+ +++.++.|.-..
T Consensus 39 ~~l~~~~~~~~~~~~~~~~v~~d~ 62 (116)
T cd02966 39 PELEALAKEYKDDGVEVVGVNVDD 62 (116)
T ss_pred HHHHHHHHHhCCCCeEEEEEECCC
Confidence 34667778886 778888887655
No 345
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=23.99 E-value=3.1e+02 Score=21.65 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=28.0
Q ss_pred ChhhHHHHHHHH--hCCCceEEEecCC------HHHHHHHHHcCCce
Q psy11337 96 GKDSCFERIVTR--FGRKCTYVVIGDG------QDEEAAAKQRNFPF 134 (155)
Q Consensus 96 GKescFerI~~R--FG~k~~yvvIGDG------~eEe~aAk~~~~PF 134 (155)
.-+...++|.+. -|+++.+++.||- .++.+.+++.++++
T Consensus 56 ~~~~~~~~i~~~~~~g~~V~~L~~GDP~~~~~~~~l~~~~~~~g~~v 102 (229)
T TIGR01465 56 SLEEIVDIMSDAHREGKLVVRLHTGDPSIYGAIAEQMQLLEALGIPY 102 (229)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeCcCccccccHHHHHHHHHHCCCCE
Confidence 345667888764 3899999999995 56666677766653
No 346
>TIGR02014 BchZ chlorophyllide reductase subunit Z. This model represents the Z subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=23.95 E-value=2.1e+02 Score=26.52 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=50.4
Q ss_pred ceEE-EEeCCCchHHHHHHHHhhccc--ccccCccccccccChhhHHHHHHHHhCCCceEEEecCCHHHHHHH-HHcCCc
Q psy11337 58 CTNV-IVITTQLIPALSKIMLFGLSG--IFDVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAA-KQRNFP 133 (155)
Q Consensus 58 ~vNV-LVTt~qLVpaLaK~LLygL~~--~fpieNIYSa~k~GKescFerI~~RFG~k~~yvvIGDG~eEe~aA-k~~~~P 133 (155)
...| ++....++-+++|.|.=.+|- ++-. +++++-..=|..|.++-.+.-.=++||...|=..+| ...+.|
T Consensus 280 ~k~vaI~gd~d~~~gl~~fL~~ElGm~~~~~~-----t~~v~~~~D~~~i~~~i~~~~p~ll~Gss~er~~~a~~~~~~p 354 (468)
T TIGR02014 280 TARFGIVASETYARGIRHVLEDELGLPCLFSL-----ARKAGSKTDNNAVRKEIVQKQPLVLYGSMNEKIYLAEADAKSR 354 (468)
T ss_pred CceEEEEcCHHHHHHHHHHHHHHCCCceEEEe-----ecceeecCCHHHHHHHHhhcCCCEEEEChHhHHHHHhcCCCCC
Confidence 3445 778888999999999944443 3311 124433345677777764444557889886555677 346779
Q ss_pred eeEeccc
Q psy11337 134 FWRISSR 140 (155)
Q Consensus 134 FwrI~~~ 140 (155)
|.|++.-
T Consensus 355 lIr~gfP 361 (468)
T TIGR02014 355 FIPASFP 361 (468)
T ss_pred eEEecCC
Confidence 9998764
No 347
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.91 E-value=3.6e+02 Score=21.09 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=27.0
Q ss_pred ccCccccccccChhhHHHHHHHHhCC-CceEEEecCC
Q psy11337 85 DVENIYSSTKIGKDSCFERIVTRFGR-KCTYVVIGDG 120 (155)
Q Consensus 85 pieNIYSa~k~GKescFerI~~RFG~-k~~yvvIGDG 120 (155)
|-...|+++|.+=++..+-+...+++ +++..+|.-|
T Consensus 147 ~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg 183 (255)
T PRK06463 147 EGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPG 183 (255)
T ss_pred CCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeC
Confidence 44567999999998888888877754 4666666544
No 348
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=23.89 E-value=1.3e+02 Score=27.76 Aligned_cols=41 Identities=17% Similarity=0.147 Sum_probs=28.6
Q ss_pred hhHHHHHHHH---hC--CCceEEEecCCH--HHHHHHHHcCCceeEec
Q psy11337 98 DSCFERIVTR---FG--RKCTYVVIGDGQ--DEEAAAKQRNFPFWRIS 138 (155)
Q Consensus 98 escFerI~~R---FG--~k~~yvvIGDG~--eEe~aAk~~~~PFwrI~ 138 (155)
.++|+.+++. +| .+..+|||.|.. .=++.|++.|+|+..|-
T Consensus 149 ~~~f~~~~~~l~~~g~~~~~~~vaiTd~~~g~L~~~A~~~g~~~f~ip 196 (446)
T PRK00973 149 LANYLIIRGILEKLGLDPKKHLVFTTDPEKGKLKKIAEKEGYRTLEIP 196 (446)
T ss_pred HHHHHHHHHHHHhcCccccceEEEEcCCCccchHHHHHHcCCcEEeeC
Confidence 4577766553 44 446899999932 33678899999987654
No 349
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=23.85 E-value=1.7e+02 Score=26.23 Aligned_cols=56 Identities=30% Similarity=0.426 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHhC---CCceEEEecC-----CHHHHH-------HHHHcC-------C-ceeEec---ccccHHHHHHHh
Q psy11337 97 KDSCFERIVTRFG---RKCTYVVIGD-----GQDEEA-------AAKQRN-------F-PFWRIS---SRSDLAALYHAL 150 (155)
Q Consensus 97 KescFerI~~RFG---~k~~yvvIGD-----G~eEe~-------aAk~~~-------~-PFwrI~---~~~Dl~~L~~al 150 (155)
+...|+++.+++- .|+++++||+ |.+..+ .++..| | |...+. .+.++.+++.+.
T Consensus 282 ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~a 361 (460)
T cd03788 282 RLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAA 361 (460)
T ss_pred HHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhc
Confidence 6788999988872 3689999964 333211 111222 2 333333 578899999887
Q ss_pred hc
Q psy11337 151 DN 152 (155)
Q Consensus 151 ~~ 152 (155)
|.
T Consensus 362 Dv 363 (460)
T cd03788 362 DV 363 (460)
T ss_pred cE
Confidence 64
No 350
>PF07733 DNA_pol3_alpha: Bacterial DNA polymerase III alpha subunit; InterPro: IPR011708 This is a conserved region found in the the DNA polymerase III alpha subunit, (2.7.7.7 from EC). DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase.; GO: 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0005737 cytoplasm; PDB: 3F2C_A 3F2B_A 3F2D_A 2HPM_A 2HPI_A 3E0D_A 2HQA_A 2HNH_A.
Probab=23.78 E-value=87 Score=28.70 Aligned_cols=110 Identities=14% Similarity=0.174 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHhHHhhhHHHHH-HHHHHhhh-hcCCCceEEEEeC--CCchHHHHHHHHhhcccccccCc-cc-------
Q psy11337 23 KREEWLQLRAEIESVTDNWLSL-AIKCLTLI-NQRPSCTNVIVIT--TQLIPALSKIMLFGLSGIFDVEN-IY------- 90 (155)
Q Consensus 23 ~r~~w~~lr~e~e~~Td~WLs~-A~k~L~~i-~~r~~~vNVLVTt--~qLVpaLaK~LLygL~~~fpieN-IY------- 90 (155)
..+.+.+|.-|++...+.=.+. -+-.-++| -+|. -+++|.. |+..-+|+=.+| |+..+=|+++ .+
T Consensus 20 ~~~~~~Rl~~El~~i~~~~~~~yfLi~~d~v~~a~~--~~i~~g~GRGS~~gSlv~y~l-gIT~vdPl~~~L~FERFlnp 96 (426)
T PF07733_consen 20 PEEYQERLEYELEVIKKLGFADYFLIVWDLVNWARK--NGILVGPGRGSAAGSLVAYLL-GITEVDPLKYDLLFERFLNP 96 (426)
T ss_dssp -HCHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHH--TT--BES-EGGGGG-HHHHHT-TSSSS-TTTTT--CHHHSTT
T ss_pred CHHHHHHHHHHHHHHHhCCCcHhHhHHHHHHHHHHh--cCCccccCCCchHHHHHHHHh-cCcccCCcccccchheecCc
Confidence 3457888888888766531111 11111112 1222 3666655 566666654443 5566666531 11
Q ss_pred ---cc-------cccChhhHHHHHHHHhCCC-----ceEEEecCCHHHHHHHHHcCCcee
Q psy11337 91 ---SS-------TKIGKDSCFERIVTRFGRK-----CTYVVIGDGQDEEAAAKQRNFPFW 135 (155)
Q Consensus 91 ---Sa-------~k~GKescFerI~~RFG~k-----~~yvvIGDG~eEe~aAk~~~~PFw 135 (155)
|- ..-..+.+++.+++|||+. +||--++.-.-=..+||.+++|.-
T Consensus 97 ~R~~~PDIDiDf~~~~R~~vi~y~~~kyG~~~va~i~T~~t~~~k~Airdv~r~lg~~~~ 156 (426)
T PF07733_consen 97 ERVSMPDIDIDFSDERREEVIDYLKEKYGEDRVAQIGTFGTFKAKSAIRDVARALGIPEE 156 (426)
T ss_dssp TS-S---EEEEEETTTHHHHHHHHHHHH-TTCEEEEEEEEE--HHHHHHHHHHHTT--HH
T ss_pred cCcCCCCceeeeCcccHHHHHHHHHHHhCccCEEEEeecccccHHHHHHHHHHHhCcCHH
Confidence 00 1125799999999999987 455555555556668888887754
No 351
>PRK13780 phosphocarrier protein HPr; Provisional
Probab=23.77 E-value=67 Score=23.06 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=20.2
Q ss_pred hHHHHHHHHhCCCceEEEecCCHHHHHHHHHc
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQDEEAAAKQR 130 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~eEe~aAk~~ 130 (155)
|...-+.=......+..++.||.||++|..++
T Consensus 46 Sil~lm~Lg~~~G~~v~i~a~G~De~~Al~~l 77 (88)
T PRK13780 46 SIMGVMSLGVGQGADITISAEGADAADAIAAI 77 (88)
T ss_pred hHHHHHhcCCCCCCEEEEEEeCcCHHHHHHHH
Confidence 44443333333456677788888999987765
No 352
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=23.63 E-value=81 Score=28.45 Aligned_cols=87 Identities=15% Similarity=0.270 Sum_probs=52.4
Q ss_pred HHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHHhCCCceEEEecCCH
Q psy11337 42 LSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQ 121 (155)
Q Consensus 42 Ls~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RFG~k~~yvvIGDG~ 121 (155)
+=.|.|.-+...++...+.|.+-||+== ..+=|..+++++ .+.+.++|+++ .-++|.||.
T Consensus 50 if~avkiydeL~~~GedveVA~VsG~~~-----------------~~v~ad~~I~~q--ld~vl~~~~~~-~~i~VsDGa 109 (344)
T PF04123_consen 50 IFGAVKIYDELKAEGEDVEVAVVSGSPD-----------------VGVEADRKIAEQ--LDEVLSKFDPD-SAIVVSDGA 109 (344)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECCCC-----------------CchhhHHHHHHH--HHHHHHhCCCC-EEEEEecCh
Confidence 3445666666767777888877776411 122233444432 57788999988 677889999
Q ss_pred HHHHHHHHc--CCcee-----EecccccHHHHHH
Q psy11337 122 DEEAAAKQR--NFPFW-----RISSRSDLAALYH 148 (155)
Q Consensus 122 eEe~aAk~~--~~PFw-----rI~~~~Dl~~L~~ 148 (155)
|.|.+-... ..|+- -+.-+++++.-|.
T Consensus 110 eDE~vlPiIqSr~~V~sV~RVVVkQs~~iEsTYy 143 (344)
T PF04123_consen 110 EDERVLPIIQSRVPVDSVKRVVVKQSRGIESTYY 143 (344)
T ss_pred hhhhhhHhhhccCceEEEEEEEEEcCCCcHHHHH
Confidence 999875432 34442 2334555555443
No 353
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=23.45 E-value=3.6e+02 Score=21.00 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=24.8
Q ss_pred CccccccccChhhHHHHHHHHhCC-CceEEEec
Q psy11337 87 ENIYSSTKIGKDSCFERIVTRFGR-KCTYVVIG 118 (155)
Q Consensus 87 eNIYSa~k~GKescFerI~~RFG~-k~~yvvIG 118 (155)
...|+++|.+=+.-.+.+...+++ +++.++|.
T Consensus 152 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~ 184 (260)
T PRK12823 152 RVPYSAAKGGVNALTASLAFEYAEHGIRVNAVA 184 (260)
T ss_pred CCccHHHHHHHHHHHHHHHHHhcccCcEEEEEe
Confidence 346999999999988888888854 56666664
No 354
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=23.33 E-value=56 Score=27.78 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=11.5
Q ss_pred CceEEEecCCHHHHH
Q psy11337 111 KCTYVVIGDGQDEEA 125 (155)
Q Consensus 111 k~~yvvIGDG~eEe~ 125 (155)
..+||++|||.-|+-
T Consensus 81 ~iv~~vvGDGE~eeG 95 (227)
T cd02011 81 LIVACVVGDGEAETG 95 (227)
T ss_pred cEEEEEECcCHHHHH
Confidence 479999999964443
No 355
>PF13479 AAA_24: AAA domain
Probab=23.23 E-value=1.2e+02 Score=24.26 Aligned_cols=55 Identities=20% Similarity=0.228 Sum_probs=39.6
Q ss_pred cccccccChhhHHHHHHHHhCCCceEEEecCCHHHHHHHHHcCCceeEecccccHHHHHHHh
Q psy11337 89 IYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAALYHAL 150 (155)
Q Consensus 89 IYSa~k~GKescFerI~~RFG~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~~~Dl~~L~~al 150 (155)
||+...+||-+.-..+ +|.-|+-.-.|.+--..+ .+.+.+.|.+-.|+.....++
T Consensus 8 IyG~~G~GKTt~a~~~-----~k~l~id~E~g~~~~~~~--~~~~~i~i~s~~~~~~~~~~l 62 (213)
T PF13479_consen 8 IYGPPGSGKTTLAASL-----PKPLFIDTENGSDSLKFL--DDGDVIPITSWEDFLEALDEL 62 (213)
T ss_pred EECCCCCCHHHHHHhC-----CCeEEEEeCCCccchhhh--cCCCeeCcCCHHHHHHHHHHH
Confidence 7999999999865554 788888876663221111 188999999888888866554
No 356
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=23.20 E-value=1.4e+02 Score=21.14 Aligned_cols=51 Identities=16% Similarity=0.289 Sum_probs=32.8
Q ss_pred hhHHHHHHHHh----CCCceEEEecCCHHHH--------HHHHHcCCceeEecccc-cHHHHHH
Q psy11337 98 DSCFERIVTRF----GRKCTYVVIGDGQDEE--------AAAKQRNFPFWRISSRS-DLAALYH 148 (155)
Q Consensus 98 escFerI~~RF----G~k~~yvvIGDG~eEe--------~aAk~~~~PFwrI~~~~-Dl~~L~~ 148 (155)
+..++.+..+. +++..-++|+||.+.. +-.++.++++.-|..-+ |...|+.
T Consensus 87 ~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~g~~~~~~l~~ 150 (161)
T cd01450 87 QYALEQLFSESNARENVPKVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGVGPADEEELRE 150 (161)
T ss_pred HHHHHHhcccccccCCCCeEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEeccccCHHHHHH
Confidence 44555555553 5677889999995532 24556688888777754 5555543
No 357
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=23.17 E-value=1.4e+02 Score=22.44 Aligned_cols=45 Identities=18% Similarity=0.338 Sum_probs=29.7
Q ss_pred hHHHHHHHHh----CCCceEEEecCCHHH------------------HHHHHHcCCceeEecccccH
Q psy11337 99 SCFERIVTRF----GRKCTYVVIGDGQDE------------------EAAAKQRNFPFWRISSRSDL 143 (155)
Q Consensus 99 scFerI~~RF----G~k~~yvvIGDG~eE------------------e~aAk~~~~PFwrI~~~~Dl 143 (155)
.+.+...+++ .++-.-|+|.||.+. .+.|++.++++.-|..-+|.
T Consensus 88 ~al~~a~~~l~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~~ 154 (174)
T cd01454 88 AAIRHAAERLLARPEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRDA 154 (174)
T ss_pred HHHHHHHHHHhcCCCcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCcc
Confidence 3444444444 355678899999753 23457778999888776664
No 358
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=23.08 E-value=5.1e+02 Score=22.60 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHhHHhhhHHHHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHH
Q psy11337 22 AKREEWLQLRAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCF 101 (155)
Q Consensus 22 ~~r~~w~~lr~e~e~~Td~WLs~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescF 101 (155)
.+.++|.+. +|.--.+=|...+..|=...+|..- .|+.+++. .=--.+|=.|||++||..=-+-=
T Consensus 100 ~~~~dw~~M---id~Ni~G~l~~~~avLP~m~~r~~G-~IiN~~Si-----------AG~~~y~~~~vY~ATK~aV~~fs 164 (246)
T COG4221 100 ADLDDWDRM---IDTNVKGLLNGTRAVLPGMVERKSG-HIINLGSI-----------AGRYPYPGGAVYGATKAAVRAFS 164 (246)
T ss_pred CCHHHHHHH---HHHHHHHHHHHHHHhhhHHHhcCCc-eEEEeccc-----------cccccCCCCccchhhHHHHHHHH
Confidence 467788765 5555666777777777776666443 44444331 01135788999999998877777
Q ss_pred HHHHHHh-CCCceEEEecCCHH
Q psy11337 102 ERIVTRF-GRKCTYVVIGDGQD 122 (155)
Q Consensus 102 erI~~RF-G~k~~yvvIGDG~e 122 (155)
+-+++.- |++++-..|--|.=
T Consensus 165 ~~LR~e~~g~~IRVt~I~PG~v 186 (246)
T COG4221 165 LGLRQELAGTGIRVTVISPGLV 186 (246)
T ss_pred HHHHHHhcCCCeeEEEecCcee
Confidence 8888877 89999888877754
No 359
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=23.07 E-value=1.2e+02 Score=20.95 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHhCCCceEEEec
Q psy11337 97 KDSCFERIVTRFGRKCTYVVIG 118 (155)
Q Consensus 97 KescFerI~~RFG~k~~yvvIG 118 (155)
..+-|+.|+.+|+.+...+|+.
T Consensus 34 Q~~L~~~ik~~F~~~P~i~V~n 55 (58)
T PF06858_consen 34 QLSLFKEIKPLFPNKPVIVVLN 55 (58)
T ss_dssp HHHHHHHHHHHTTTS-EEEEE-
T ss_pred HHHHHHHHHHHcCCCCEEEEEe
Confidence 4678999999998888888763
No 360
>PF07683 CobW_C: Cobalamin synthesis protein cobW C-terminal domain; InterPro: IPR011629 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [].; PDB: 1NIJ_A.
Probab=23.06 E-value=66 Score=21.86 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=14.3
Q ss_pred CCCceEEEecCCHHHHHHHHHc
Q psy11337 109 GRKCTYVVIGDGQDEEAAAKQR 130 (155)
Q Consensus 109 G~k~~yvvIGDG~eEe~aAk~~ 130 (155)
.+.+..|+||.+.|+++..+.+
T Consensus 69 ~~~~~lV~IG~~ld~~~l~~~l 90 (94)
T PF07683_consen 69 DRDSRLVFIGKNLDKEALREAL 90 (94)
T ss_dssp ---EEEEEEEES--HHHHHHHH
T ss_pred CCCeEEEEEECCCCHHHHHHHH
Confidence 5889999999999988776654
No 361
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=22.98 E-value=1.3e+02 Score=21.51 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=45.1
Q ss_pred eEEEEeCCCc-hHHHHHHHHhhcccccccCccccccccC-hh---hHHHHHHHHhCCCceEEEecCCHH----------H
Q psy11337 59 TNVIVITTQL-IPALSKIMLFGLSGIFDVENIYSSTKIG-KD---SCFERIVTRFGRKCTYVVIGDGQD----------E 123 (155)
Q Consensus 59 vNVLVTt~qL-VpaLaK~LLygL~~~fpieNIYSa~k~G-Ke---scFerI~~RFG~k~~yvvIGDG~e----------E 123 (155)
+.+.=|+++- --.+.+..+-+-+.++=. ||.+..- =+ .=++.|....+.++-.++||.-.| |
T Consensus 50 l~i~D~~g~~~~~~~~~~~~~~~~~~ii~---fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~ 126 (162)
T PF00071_consen 50 LEIWDTSGQERFDSLRDIFYRNSDAIIIV---FDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEE 126 (162)
T ss_dssp EEEEEETTSGGGHHHHHHHHTTESEEEEE---EETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHH
T ss_pred ccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccceeeeccccccccccchhhH
Confidence 3344355553 234455555555554432 3333321 11 334445555565789999985543 1
Q ss_pred -HHHHHHcCCceeEecccc
Q psy11337 124 -EAAAKQRNFPFWRISSRS 141 (155)
Q Consensus 124 -e~aAk~~~~PFwrI~~~~ 141 (155)
++-|++++.||..+|+..
T Consensus 127 ~~~~~~~~~~~~~e~Sa~~ 145 (162)
T PF00071_consen 127 AQEFAKELGVPYFEVSAKN 145 (162)
T ss_dssp HHHHHHHTTSEEEEEBTTT
T ss_pred HHHHHHHhCCEEEEEECCC
Confidence 347889999999999954
No 362
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=22.72 E-value=1.5e+02 Score=19.78 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=14.4
Q ss_pred HHHHHHHhCCCceEEEecCCHHHHHHHHHcC
Q psy11337 101 FERIVTRFGRKCTYVVIGDGQDEEAAAKQRN 131 (155)
Q Consensus 101 FerI~~RFG~k~~yvvIGDG~eEe~aAk~~~ 131 (155)
|+.+.++|..++.|..| |..+..+.+++++
T Consensus 40 ~~~~~~~~~~~~~~~~i-d~~~~~~~~~~~~ 69 (103)
T cd03001 40 WKKAAKALKGIVKVGAV-DADVHQSLAQQYG 69 (103)
T ss_pred HHHHHHHhcCCceEEEE-ECcchHHHHHHCC
Confidence 55555555445555554 2323344445543
No 363
>PF09828 Chrome_Resist: Chromate resistance exported protein; InterPro: IPR018634 Members of this family of bacterial proteins are involved in the reduction of chromate accumulation and are essential for chromate resistance [, ].
Probab=22.56 E-value=56 Score=26.12 Aligned_cols=44 Identities=14% Similarity=0.284 Sum_probs=29.1
Q ss_pred ccChhhHHHHHHHHh-CCCceEEEecCCH----HHHHHHHHcCCceeEec
Q psy11337 94 KIGKDSCFERIVTRF-GRKCTYVVIGDGQ----DEEAAAKQRNFPFWRIS 138 (155)
Q Consensus 94 k~GKescFerI~~RF-G~k~~yvvIGDG~----eEe~aAk~~~~PFwrI~ 138 (155)
||.+..| -|++.|| .+...|+.+.++. +++..|--..||=...+
T Consensus 8 ~VDRiAc-~WLIrRFIDp~A~F~fv~~~~v~~~~~~~~A~pFD~~ga~~t 56 (135)
T PF09828_consen 8 KVDRIAC-PWLIRRFIDPEAEFLFVPPPEVLDVACPFDAIPFDIPGAEFT 56 (135)
T ss_pred CchhhhC-HHHHHHhcCCCceEEEeCchhhccccccCCCCcccCCCCeee
Confidence 4555556 5899999 9999999999987 44444433444433333
No 364
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=22.53 E-value=73 Score=25.81 Aligned_cols=52 Identities=27% Similarity=0.412 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCceEEEecCCHHHH---------HHHHHcC----CceeEecccccHHHHHHHhhc
Q psy11337 100 CFERIVTRFGRKCTYVVIGDGQDEE---------AAAKQRN----FPFWRISSRSDLAALYHALDN 152 (155)
Q Consensus 100 cFerI~~RFG~k~~yvvIGDG~eEe---------~aAk~~~----~PFwrI~~~~Dl~~L~~al~~ 152 (155)
.|..+.++ ++++.++++|+|.++. .-++..+ +=|..--...++..++.+.+.
T Consensus 241 a~~~l~~~-~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi 305 (398)
T cd03800 241 AYAELPEL-RERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADV 305 (398)
T ss_pred HHHHHHHh-CCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCE
Confidence 34444444 5689999999986532 1223333 223333335566666666543
No 365
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=22.45 E-value=3.2e+02 Score=25.11 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=40.0
Q ss_pred CccccccccChhhHHHHHHHHhCC---CceEEEecCCHHHH---HHHHHcCCceeEecccccHHHHHHHhhcCC
Q psy11337 87 ENIYSSTKIGKDSCFERIVTRFGR---KCTYVVIGDGQDEE---AAAKQRNFPFWRISSRSDLAALYHALDNGF 154 (155)
Q Consensus 87 eNIYSa~k~GKescFerI~~RFG~---k~~yvvIGDG~eEe---~aAk~~~~PFwrI~~~~Dl~~L~~al~~~~ 154 (155)
+|.|+. .+|+++-|+..-|. .-+-+|+|-|+=-. ..||.++....- ...|-.++..|..+|+
T Consensus 179 dn~~g~----g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV--~d~d~~R~~~A~~~G~ 246 (413)
T cd00401 179 DNLYGC----RESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIV--TEVDPICALQAAMEGY 246 (413)
T ss_pred cccchh----chhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE--EECChhhHHHHHhcCC
Confidence 677765 35678888887653 56779999997544 456778886433 3344455566665553
No 366
>PRK13759 arylsulfatase; Provisional
Probab=22.44 E-value=2.9e+02 Score=25.01 Aligned_cols=49 Identities=6% Similarity=-0.001 Sum_probs=33.1
Q ss_pred ChhhHHHHHHHHHHhHHhhhHHHHHHHHHHhhhhcCCCceEEEEeCCCch
Q psy11337 20 GPAKREEWLQLRAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQLI 69 (155)
Q Consensus 20 ~~~~r~~w~~lr~e~e~~Td~WLs~A~k~L~~i~~r~~~vNVLVTt~qLV 69 (155)
+.+..+...+.|...=.++|..+..-.+.|+......|-+ |++||.+--
T Consensus 259 ~~~~~~~~~~~Y~~~i~~~D~~iG~l~~~l~~~g~~dnTi-iv~tsDHG~ 307 (485)
T PRK13759 259 GEEYARRARAAYYGLITHIDHQIGRFLQALKEFGLLDNTI-ILFVSDHGD 307 (485)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCeE-EEEECCCcc
Confidence 3344445555666666689988888777777655556666 888888763
No 367
>COG1172 AraH Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]
Probab=22.36 E-value=69 Score=28.17 Aligned_cols=30 Identities=37% Similarity=0.607 Sum_probs=24.0
Q ss_pred HHHhCCCceEEEecCCHHHHHHHHHcCCceeEecc
Q psy11337 105 VTRFGRKCTYVVIGDGQDEEAAAKQRNFPFWRISS 139 (155)
Q Consensus 105 ~~RFG~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~ 139 (155)
++||||.+ -+||+. |+||+..++|.-|+..
T Consensus 181 rT~~Gr~i--~AvG~N---~~AA~~sGI~v~rv~i 210 (316)
T COG1172 181 RTRFGRSI--YAVGGN---EEAARLSGIPVRRVKI 210 (316)
T ss_pred hccccCEE--EEECCC---HHHHHHcCCCccceee
Confidence 67889875 467775 7899999999988864
No 368
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=22.28 E-value=4.6e+02 Score=23.28 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=24.9
Q ss_pred HHHHHHhhhhcC-C---CceEEEEeCCCchHHHHHHHHhhcc
Q psy11337 44 LAIKCLTLINQR-P---SCTNVIVITTQLIPALSKIMLFGLS 81 (155)
Q Consensus 44 ~A~k~L~~i~~r-~---~~vNVLVTt~qLVpaLaK~LLygL~ 81 (155)
...+++..++.. . ...+|-|+|..++|.+.+++=-+++
T Consensus 173 ~v~~~l~~l~~~~g~~i~~~~itisT~G~~~~i~~l~~~~l~ 214 (355)
T TIGR00048 173 EVVKAMEIMNDDFGLGISKRRITISTSGVVPKIDILADKMLQ 214 (355)
T ss_pred HHHHHHHHhhcccccCcCCCeEEEECCCchHHHHHHHHhCCC
Confidence 445666666543 2 2358999999999988777543443
No 369
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=22.28 E-value=1.7e+02 Score=20.91 Aligned_cols=36 Identities=3% Similarity=0.050 Sum_probs=21.1
Q ss_pred HHHHHHHHhC-CCceEEEecC-------CHHHHH-HHHHcCCcee
Q psy11337 100 CFERIVTRFG-RKCTYVVIGD-------GQDEEA-AAKQRNFPFW 135 (155)
Q Consensus 100 cFerI~~RFG-~k~~yvvIGD-------G~eEe~-aAk~~~~PFw 135 (155)
=++++.++|+ +++.++.|.. ..++-+ .+++++++|=
T Consensus 44 ~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p 88 (126)
T cd03012 44 YLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYP 88 (126)
T ss_pred HHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCC
Confidence 3577888886 5577776632 222222 3677777753
No 370
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=22.25 E-value=2e+02 Score=27.50 Aligned_cols=56 Identities=25% Similarity=0.334 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHhC---CCceEEEec----CCHHHH-----H---HHHHcC-------C-ceeEe---cccccHHHHHHHh
Q psy11337 97 KDSCFERIVTRFG---RKCTYVVIG----DGQDEE-----A---AAKQRN-------F-PFWRI---SSRSDLAALYHAL 150 (155)
Q Consensus 97 KescFerI~~RFG---~k~~yvvIG----DG~eEe-----~---aAk~~~-------~-PFwrI---~~~~Dl~~L~~al 150 (155)
|...|+++.+++- .|++++.|| +|.++. + .+.+.| | |...+ -++.|+.++|.+.
T Consensus 283 ~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~a 362 (726)
T PRK14501 283 RLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAA 362 (726)
T ss_pred HHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhc
Confidence 7899999988872 268999997 552211 1 111112 2 43323 2578999999988
Q ss_pred hc
Q psy11337 151 DN 152 (155)
Q Consensus 151 ~~ 152 (155)
|.
T Consensus 363 Dv 364 (726)
T PRK14501 363 DV 364 (726)
T ss_pred cE
Confidence 74
No 371
>PRK09186 flagellin modification protein A; Provisional
Probab=22.14 E-value=3.7e+02 Score=20.71 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=25.1
Q ss_pred cccccccChhhHHHHHHHHhC-CCceEEEecCC
Q psy11337 89 IYSSTKIGKDSCFERIVTRFG-RKCTYVVIGDG 120 (155)
Q Consensus 89 IYSa~k~GKescFerI~~RFG-~k~~yvvIGDG 120 (155)
.|+++|.+-++-.+-+...+. ++.++.+|.=|
T Consensus 167 ~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg 199 (256)
T PRK09186 167 EYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPG 199 (256)
T ss_pred hhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecc
Confidence 699999999999888888884 45776666554
No 372
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=21.97 E-value=1.5e+02 Score=22.51 Aligned_cols=28 Identities=32% Similarity=0.367 Sum_probs=21.1
Q ss_pred CCceEEEecCC-----HHHHHHHHHcCCceeEe
Q psy11337 110 RKCTYVVIGDG-----QDEEAAAKQRNFPFWRI 137 (155)
Q Consensus 110 ~k~~yvvIGDG-----~eEe~aAk~~~~PFwrI 137 (155)
.+.++|++||| ..|=..|.+++.|..-|
T Consensus 66 ~~~vv~i~GDG~f~~~~~el~ta~~~~lpv~iv 98 (172)
T cd02004 66 DKRVVLVEGDGAFGFSGMELETAVRYNLPIVVV 98 (172)
T ss_pred CCeEEEEEcchhhcCCHHHHHHHHHcCCCEEEE
Confidence 45789999998 35667888899995444
No 373
>PLN02412 probable glutathione peroxidase
Probab=21.95 E-value=1.7e+02 Score=22.48 Aligned_cols=20 Identities=0% Similarity=0.109 Sum_probs=16.2
Q ss_pred hHHHHHHHHhC-CCceEEEec
Q psy11337 99 SCFERIVTRFG-RKCTYVVIG 118 (155)
Q Consensus 99 scFerI~~RFG-~k~~yvvIG 118 (155)
.-|..+.++|. ++++++.|.
T Consensus 49 ~~l~~l~~~~~~~g~~vvgv~ 69 (167)
T PLN02412 49 KELNVLYEKYKEQGFEILAFP 69 (167)
T ss_pred HHHHHHHHHHhhCCcEEEEec
Confidence 45888999994 668888886
No 374
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=21.93 E-value=2e+02 Score=24.28 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=15.1
Q ss_pred hHHHHHHHHhCCCceEEEecCC
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDG 120 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG 120 (155)
.+|.++.++ ++++.+++||++
T Consensus 232 ~a~~~l~~~-~~~~~lvivG~~ 252 (396)
T cd03818 232 RALPRLLRA-RPDARVVIVGGD 252 (396)
T ss_pred HHHHHHHHH-CCCcEEEEEcCC
Confidence 455555554 578999999984
No 375
>KOG2924|consensus
Probab=21.93 E-value=1.1e+02 Score=28.03 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=25.8
Q ss_pred hhhHHHHHHHH-HHhhhhcCCCceEEEEeCCC-chHHHHHHHH
Q psy11337 37 VTDNWLSLAIK-CLTLINQRPSCTNVIVITTQ-LIPALSKIML 77 (155)
Q Consensus 37 ~Td~WLs~A~k-~L~~i~~r~~~vNVLVTt~q-LVpaLaK~LL 77 (155)
||-+-.|+..+ .+.-+ ...++|.|+|||+. +=--|.|||-
T Consensus 103 yTSNliSSGlRetiryl-vqh~mVdviVttaGGvEEDlIKcla 144 (366)
T KOG2924|consen 103 YTSNLISSGLRETIRYL-VQHNMVDVIVTTAGGVEEDLIKCLA 144 (366)
T ss_pred cchhhhhhhHHHHHHHH-HHhcceeEEEecCCccHHHHHHHhC
Confidence 45566666543 22222 33689999999865 4467999984
No 376
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=21.83 E-value=3.9e+02 Score=22.95 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=43.5
Q ss_pred EEEeCCCchHHHHHHHHhhccc-ccccCccccccccChhhHHHHHHHHh-CCCceEE-EecCCHHHHHHHHHc----CCc
Q psy11337 61 VIVITTQLIPALSKIMLFGLSG-IFDVENIYSSTKIGKDSCFERIVTRF-GRKCTYV-VIGDGQDEEAAAKQR----NFP 133 (155)
Q Consensus 61 VLVTt~qLVpaLaK~LLygL~~-~fpieNIYSa~k~GKescFerI~~RF-G~k~~yv-vIGDG~eEe~aAk~~----~~P 133 (155)
++||...+...+.+.+.-.|.. -+.+. +|+-. -..+-.+++.+.+ ..++..| .||.| -=-..||.. +.|
T Consensus 27 liv~d~~~~~~~~~~l~~~L~~~~~~~~-~~~~~--p~~~~v~~~~~~~~~~~~D~iIavGGG-s~~D~aK~ia~~~~~p 102 (347)
T cd08172 27 LIVTGPRSWAAAKPYLPESLAAGEAFVL-RYDGE--CSEENIERLAAQAKENGADVIIGIGGG-KVLDTAKAVADRLGVP 102 (347)
T ss_pred EEEECHHHHHHHHHHHHHHHhcCeEEEE-EeCCC--CCHHHHHHHHHHHHhcCCCEEEEeCCc-HHHHHHHHHHHHhCCC
Confidence 4566666666666665554421 11221 34322 5566677777777 4455554 48887 344444444 889
Q ss_pred eeEeccc
Q psy11337 134 FWRISSR 140 (155)
Q Consensus 134 FwrI~~~ 140 (155)
|+-|-+-
T Consensus 103 ~i~VPTT 109 (347)
T cd08172 103 VITVPTL 109 (347)
T ss_pred EEEecCc
Confidence 9988764
No 377
>PF15162 DUF4580: Domain of unknown function (DUF4580)
Probab=21.78 E-value=1.3e+02 Score=24.95 Aligned_cols=70 Identities=21% Similarity=0.312 Sum_probs=42.3
Q ss_pred ceEEEEeCCCchHHHHHHHHhhccccccc-Cc---cccccccChhh--HHHHHHHHh-CCCceEEEecCCHHHH----HH
Q psy11337 58 CTNVIVITTQLIPALSKIMLFGLSGIFDV-EN---IYSSTKIGKDS--CFERIVTRF-GRKCTYVVIGDGQDEE----AA 126 (155)
Q Consensus 58 ~vNVLVTt~qLVpaLaK~LLygL~~~fpi-eN---IYSa~k~GKes--cFerI~~RF-G~k~~yvvIGDG~eEe----~a 126 (155)
.+=.|++...+.--++|. -.+..+ .| +-|+.-.||+. --.|| +|| |+|.+.+.+=.-.+-. ..
T Consensus 49 vAFLL~d~~~~~~~l~ki-----~kF~~ihrNsflvL~aalhg~~ew~~m~~i-qRFLG~nl~ilpvhn~~~~v~~M~ti 122 (162)
T PF15162_consen 49 VAFLLMDAQECFMFLAKI-----EKFIDIHRNSFLVLSAALHGPEEWKLMFRI-QRFLGSNLRILPVHNPANCVKLMCTI 122 (162)
T ss_pred ceeeEeccHHHhhHHHHH-----HHHHhccCCceEEeehhhcCHHHHHHHHHH-HHHhcCCceEEecCCHHHHHHHHHHH
Confidence 344455555544433333 233333 34 45777788653 45677 999 9999999887664432 36
Q ss_pred HHHcCCc
Q psy11337 127 AKQRNFP 133 (155)
Q Consensus 127 Ak~~~~P 133 (155)
||..+=|
T Consensus 123 AK~t~kP 129 (162)
T PF15162_consen 123 AKTTSKP 129 (162)
T ss_pred HHHhcCC
Confidence 7776655
No 378
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=21.77 E-value=1.4e+02 Score=24.61 Aligned_cols=73 Identities=19% Similarity=0.381 Sum_probs=40.9
Q ss_pred eEEEEeCCCchHHHHHHHHhhcccccccCcccccccc-------------------------C-hhhHHHHHHHHh-C-C
Q psy11337 59 TNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKI-------------------------G-KDSCFERIVTRF-G-R 110 (155)
Q Consensus 59 vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~-------------------------G-KescFerI~~RF-G-~ 110 (155)
-.++++.++-.|++--+|. +-++||.|++-+-.+. | =...--.+.+++ + .
T Consensus 50 d~~v~s~gH~~~~~ya~l~--~~g~~~~~~l~~~~~~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~ 127 (255)
T cd02012 50 DRFVLSKGHASPALYAVLA--LAGYLPEEDLKTFRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFD 127 (255)
T ss_pred CeEEEcCCcHHHHHHHHHH--HcCCCCHHHHHHhcccCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCC
Confidence 3478888898888665554 4444444332211111 1 011223344554 3 5
Q ss_pred CceEEEecCCH-------HHHHHHHHcCCc
Q psy11337 111 KCTYVVIGDGQ-------DEEAAAKQRNFP 133 (155)
Q Consensus 111 k~~yvvIGDG~-------eEe~aAk~~~~P 133 (155)
+-+||++|||. ||-..|..++.|
T Consensus 128 ~~v~~i~GDG~~~~G~~~eal~~a~~~~l~ 157 (255)
T cd02012 128 YRVYVLLGDGELQEGSVWEAASFAGHYKLD 157 (255)
T ss_pred CEEEEEECcccccccHHHHHHHHHHHcCCC
Confidence 68999999983 445567777776
No 379
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=21.75 E-value=3.7e+02 Score=20.55 Aligned_cols=68 Identities=25% Similarity=0.219 Sum_probs=40.4
Q ss_pred ccccCccccccccChhhHHHHH--HHHh--CCCceEEEecC------CHHHHHHHHH--cCCceeEecccccHHHHHHHh
Q psy11337 83 IFDVENIYSSTKIGKDSCFERI--VTRF--GRKCTYVVIGD------GQDEEAAAKQ--RNFPFWRISSRSDLAALYHAL 150 (155)
Q Consensus 83 ~fpieNIYSa~k~GKescFerI--~~RF--G~k~~yvvIGD------G~eEe~aAk~--~~~PFwrI~~~~Dl~~L~~al 150 (155)
.||....-......-.+-.+.| .+.. |+++.|++.|| +.+..+..++ .|+++--|-.=|.+.++-.++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~V~~l~~GDP~~~~~~~~l~~~l~~~~~gi~v~iiPGiSs~~~a~a~~ 125 (210)
T PF00590_consen 46 IFPMGKDRESLEESYDEIAEIIEAIEAAKEGKDVVVLVSGDPLFFSTGSYLVRALRAEERGIEVEIIPGISSFQAAAARL 125 (210)
T ss_dssp EETTSSEEEEEHHHHHHHHHHHHHHHHHHTTSEEEEEESBSTTSSSSHHHHHHHHHHHHTTCEEEEE--TTHHHHHHHHC
T ss_pred cccccccccchhhhhhHHHHHHHHHHHHhccCCEEEeCCCCCCcccHHHHHHHHHHhhcCCCceEEEecCcHHHHHHHHH
Confidence 4444333222333344555666 4444 88899999999 3577766666 888876666556555554443
No 380
>PRK00654 glgA glycogen synthase; Provisional
Probab=21.53 E-value=2.6e+02 Score=24.76 Aligned_cols=21 Identities=14% Similarity=0.428 Sum_probs=13.7
Q ss_pred hHHHHHHHHhCCCceEEEecCCHH
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQD 122 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~e 122 (155)
+.|+++.++ ++.++++|+|..
T Consensus 302 ~a~~~l~~~---~~~lvivG~g~~ 322 (466)
T PRK00654 302 EALPELLEQ---GGQLVLLGTGDP 322 (466)
T ss_pred HHHHHHHhc---CCEEEEEecCcH
Confidence 344454432 688999999853
No 381
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=21.41 E-value=87 Score=25.89 Aligned_cols=42 Identities=24% Similarity=0.254 Sum_probs=30.2
Q ss_pred ceEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhH
Q psy11337 58 CTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSC 100 (155)
Q Consensus 58 ~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKesc 100 (155)
--.|+++.+.|-|++.+.+.=-++. .++-|.|++|+.|--.+
T Consensus 279 lr~v~~~G~~l~~~~~~~~~~~~~~-~~i~~~YG~tE~~~~~~ 320 (417)
T PF00501_consen 279 LRTVISGGEPLPPDLLRRLRKAFGN-APIINLYGSTETGSIAT 320 (417)
T ss_dssp -SEEEEESST-CHHHHHHHHHHHTT-SEEEEEEEEGGGSSEEE
T ss_pred ccccccccccCChhhcccccccccc-ccceecccccccceeee
Confidence 4557778888888888766655555 78899999999886554
No 382
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=21.30 E-value=2e+02 Score=24.85 Aligned_cols=65 Identities=15% Similarity=0.244 Sum_probs=41.5
Q ss_pred HHHHHHHhhccc--------------ccccCccccccccC--hhhHHHHHHHHhCCCceEEEecCCHHHHHHHHHcCCce
Q psy11337 71 ALSKIMLFGLSG--------------IFDVENIYSSTKIG--KDSCFERIVTRFGRKCTYVVIGDGQDEEAAAKQRNFPF 134 (155)
Q Consensus 71 aLaK~LLygL~~--------------~fpieNIYSa~k~G--KescFerI~~RFG~k~~yvvIGDG~eEe~aAk~~~~PF 134 (155)
.|...++|+++. +=|+.=.|...-.. -...+=+..++|+++...++-. |..=+++|+++++||
T Consensus 81 el~~~v~yQigaL~~~a~~~g~~l~hVKPHGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~a-gs~~~~~A~~~Gl~~ 159 (242)
T PF03746_consen 81 ELRDSVLYQIGALQAIAAAEGVPLHHVKPHGALYNMAAKDEELARAIAEAIKAFDPDLPLYGLA-GSELEKAAKELGLPV 159 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--EEEE---HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEET-TSHHHHHHHHCT--E
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeEEecccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEcC-CcHHHHHHHHCCCcE
Confidence 355667777764 45666667665544 3466777789999998877777 447788999999999
Q ss_pred eE
Q psy11337 135 WR 136 (155)
Q Consensus 135 wr 136 (155)
|.
T Consensus 160 ~~ 161 (242)
T PF03746_consen 160 VF 161 (242)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 383
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=21.30 E-value=3.3e+02 Score=22.35 Aligned_cols=82 Identities=18% Similarity=0.141 Sum_probs=52.9
Q ss_pred CCCceEEEEeCCCchHH-------HHHH---HHhhc---c---------cccccCccccccccChhhHHHHHHHHhC-CC
Q psy11337 55 RPSCTNVIVITTQLIPA-------LSKI---MLFGL---S---------GIFDVENIYSSTKIGKDSCFERIVTRFG-RK 111 (155)
Q Consensus 55 r~~~vNVLVTt~qLVpa-------LaK~---LLygL---~---------~~fpieNIYSa~k~GKescFerI~~RFG-~k 111 (155)
+..+.=|+||+-+-|.+ ..+. |+-.| | ++.|.+| =... --|--=|++..++|+ .-
T Consensus 45 ~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~-c~cR-KP~~gm~~~~~~~~~iD~ 122 (181)
T COG0241 45 RAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDN-CDCR-KPKPGMLLSALKEYNIDL 122 (181)
T ss_pred hCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCC-Cccc-CCChHHHHHHHHHhCCCc
Confidence 78899999999666532 2222 32222 2 3445555 1111 123445788999997 44
Q ss_pred ceEEEecCCHHHHHHHHHcCCceeEec
Q psy11337 112 CTYVVIGDGQDEEAAAKQRNFPFWRIS 138 (155)
Q Consensus 112 ~~yvvIGDG~eEe~aAk~~~~PFwrI~ 138 (155)
-..++|||....=+||..+|+.=+.+.
T Consensus 123 ~~s~~VGD~~~Dlq~a~n~gi~~~~~~ 149 (181)
T COG0241 123 SRSYVVGDRLTDLQAAENAGIKGVLVL 149 (181)
T ss_pred cceEEecCcHHHHHHHHHCCCCceEEE
Confidence 678899999999999999998744443
No 384
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=21.29 E-value=2.8e+02 Score=19.96 Aligned_cols=42 Identities=14% Similarity=0.378 Sum_probs=28.5
Q ss_pred CCCceEEEecCCHHH-----------HHHHHHcCCceeEecccc--cHHHHHHHh
Q psy11337 109 GRKCTYVVIGDGQDE-----------EAAAKQRNFPFWRISSRS--DLAALYHAL 150 (155)
Q Consensus 109 G~k~~yvvIGDG~eE-----------e~aAk~~~~PFwrI~~~~--Dl~~L~~al 150 (155)
.++...++||--.|. .+-|+.+++|+..+|+.. ++..+...+
T Consensus 105 ~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 159 (166)
T cd01869 105 SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM 159 (166)
T ss_pred CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence 467888999876552 234677899999999853 455555443
No 385
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=21.24 E-value=2e+02 Score=24.92 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=9.8
Q ss_pred CceEEEecCCHH
Q psy11337 111 KCTYVVIGDGQD 122 (155)
Q Consensus 111 k~~yvvIGDG~e 122 (155)
.+.|+++|+|.+
T Consensus 325 ~~~lvi~G~g~~ 336 (476)
T cd03791 325 GGQLVILGSGDP 336 (476)
T ss_pred CcEEEEEecCCH
Confidence 389999999954
No 386
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=21.18 E-value=3.3e+02 Score=19.76 Aligned_cols=48 Identities=19% Similarity=0.352 Sum_probs=29.4
Q ss_pred HHHHHHhCCCceEEEecCCHH-----------HHHHHHHcCCceeEecccc--cHHHHHHH
Q psy11337 102 ERIVTRFGRKCTYVVIGDGQD-----------EEAAAKQRNFPFWRISSRS--DLAALYHA 149 (155)
Q Consensus 102 erI~~RFG~k~~yvvIGDG~e-----------Ee~aAk~~~~PFwrI~~~~--Dl~~L~~a 149 (155)
+.|.++...+...++||--.| ..+.++.+++|++.+|+.. .+..|...
T Consensus 97 ~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 157 (165)
T cd01865 97 TQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFER 157 (165)
T ss_pred HHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 344444445566777775433 1235788999999999843 35555544
No 387
>PRK06196 oxidoreductase; Provisional
Probab=21.18 E-value=2.7e+02 Score=22.94 Aligned_cols=36 Identities=11% Similarity=-0.015 Sum_probs=27.0
Q ss_pred ccCccccccccChhhHHHHHHHHhC-CCceEEEecCC
Q psy11337 85 DVENIYSSTKIGKDSCFERIVTRFG-RKCTYVVIGDG 120 (155)
Q Consensus 85 pieNIYSa~k~GKescFerI~~RFG-~k~~yvvIGDG 120 (155)
+..+.|+++|.+.+.--+.+..+++ ..++.++|--|
T Consensus 176 ~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG 212 (315)
T PRK06196 176 DKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPG 212 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCC
Confidence 3446799999998887777878885 45787776654
No 388
>PRK07856 short chain dehydrogenase; Provisional
Probab=21.18 E-value=4e+02 Score=20.73 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=29.2
Q ss_pred ccCccccccccChhhHHHHHHHHhCCCceEEEecCC
Q psy11337 85 DVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDG 120 (155)
Q Consensus 85 pieNIYSa~k~GKescFerI~~RFG~k~~yvvIGDG 120 (155)
|-...|+++|.+=+.-.+.+...++++++..+|--|
T Consensus 143 ~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg 178 (252)
T PRK07856 143 PGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVG 178 (252)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEec
Confidence 345789999999888889999999887887776544
No 389
>KOG3236|consensus
Probab=21.17 E-value=83 Score=27.23 Aligned_cols=35 Identities=31% Similarity=0.665 Sum_probs=27.9
Q ss_pred HHHHHHHh-CC-CceEEEecCCHHHHHHHHHcCCcee
Q psy11337 101 FERIVTRF-GR-KCTYVVIGDGQDEEAAAKQRNFPFW 135 (155)
Q Consensus 101 FerI~~RF-G~-k~~yvvIGDG~eEe~aAk~~~~PFw 135 (155)
+--|++|+ || ...|+|.|=|+...+.----..|.|
T Consensus 84 l~li~s~~~~~~~~k~~~~gLGWafA~sVlhRlipLW 120 (225)
T KOG3236|consen 84 LHLIMSRFPGKGEVKFVVAGLGWAFAESVLHRLIPLW 120 (225)
T ss_pred HHHHHhcCCCCCceeEEEeechHHHHHHHHHhhhHhh
Confidence 56789999 54 4999999999998886655567777
No 390
>PRK06523 short chain dehydrogenase; Provisional
Probab=21.06 E-value=4.1e+02 Score=20.70 Aligned_cols=35 Identities=9% Similarity=0.159 Sum_probs=28.2
Q ss_pred cCccccccccChhhHHHHHHHHhCC-CceEEEecCC
Q psy11337 86 VENIYSSTKIGKDSCFERIVTRFGR-KCTYVVIGDG 120 (155)
Q Consensus 86 ieNIYSa~k~GKescFerI~~RFG~-k~~yvvIGDG 120 (155)
-...|+++|.+=++-.+.+...+++ ++++.+|.-|
T Consensus 148 ~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg 183 (260)
T PRK06523 148 STTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPG 183 (260)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecC
Confidence 4578999999999999999888864 5888777644
No 391
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=20.99 E-value=2.1e+02 Score=26.98 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=33.2
Q ss_pred cccccccChh------hHHHHHHHHhCCCceEEE-ecCC-----------HHHHHHHHHcCCceeEe
Q psy11337 89 IYSSTKIGKD------SCFERIVTRFGRKCTYVV-IGDG-----------QDEEAAAKQRNFPFWRI 137 (155)
Q Consensus 89 IYSa~k~GKe------scFerI~~RFG~k~~yvv-IGDG-----------~eEe~aAk~~~~PFwrI 137 (155)
||....+|-. .++.|..+.+|.+|.||. |.|= ..-..+|++.|++..-+
T Consensus 33 vy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~ 99 (490)
T PRK14536 33 VYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEI 99 (490)
T ss_pred cCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHH
Confidence 6777777743 456788877899999998 3222 23344688888876443
No 392
>PRK10897 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); Provisional
Probab=20.98 E-value=68 Score=23.23 Aligned_cols=32 Identities=19% Similarity=0.133 Sum_probs=17.9
Q ss_pred hHHHHHHHHhCCCceEEEecCCHHHHHHHHHc
Q psy11337 99 SCFERIVTRFGRKCTYVVIGDGQDEEAAAKQR 130 (155)
Q Consensus 99 scFerI~~RFG~k~~yvvIGDG~eEe~aAk~~ 130 (155)
|...-+.=.-.+.-.-.+..||.||++|...+
T Consensus 48 Sil~lm~Lg~~~G~~i~v~~~G~De~~A~~~l 79 (90)
T PRK10897 48 SVIALLMLDSAKGRQIEVEATGPQEEEALAAV 79 (90)
T ss_pred hHHHHHHhCCCCCCEEEEEEECcCHHHHHHHH
Confidence 44444443333334445556677888887654
No 393
>PRK05693 short chain dehydrogenase; Provisional
Probab=20.96 E-value=4e+02 Score=21.09 Aligned_cols=36 Identities=6% Similarity=0.057 Sum_probs=23.3
Q ss_pred cccCccccccccChhhHHHHHHHHhC-CCceEEEecC
Q psy11337 84 FDVENIYSSTKIGKDSCFERIVTRFG-RKCTYVVIGD 119 (155)
Q Consensus 84 fpieNIYSa~k~GKescFerI~~RFG-~k~~yvvIGD 119 (155)
.|....|+++|.+=+.-.+.+...++ .+++.++|.-
T Consensus 137 ~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~p 173 (274)
T PRK05693 137 TPFAGAYCASKAAVHALSDALRLELAPFGVQVMEVQP 173 (274)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEec
Confidence 34567899999987777777776653 3344444433
No 394
>PLN02448 UDP-glycosyltransferase family protein
Probab=20.93 E-value=5.8e+02 Score=23.02 Aligned_cols=84 Identities=13% Similarity=0.154 Sum_probs=51.5
Q ss_pred CCceEEEEeCCC-chHHHHHHH--Hhh-----ccccccc---CccccccccCh--hhHHHHHHHHhCCCceEEEecCCH-
Q psy11337 56 PSCTNVIVITTQ-LIPALSKIM--LFG-----LSGIFDV---ENIYSSTKIGK--DSCFERIVTRFGRKCTYVVIGDGQ- 121 (155)
Q Consensus 56 ~~~vNVLVTt~q-LVpaLaK~L--Lyg-----L~~~fpi---eNIYSa~k~GK--escFerI~~RFG~k~~yvvIGDG~- 121 (155)
..+-.|||+|=. |=|...+.| .++ .|+..|. .+........+ ..|.+|+-++=.+.+.||.-|.-.
T Consensus 207 ~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~ 286 (459)
T PLN02448 207 PKAQYLLFTSFYELEAQAIDALKSKFPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLS 286 (459)
T ss_pred ccCCEEEEccHHHhhHHHHHHHHhhcCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeeccccc
Confidence 456789999988 888766665 232 5555442 12221110111 379999988656789999999752
Q ss_pred -------HHHHHHHHcCCcee-Eecc
Q psy11337 122 -------DEEAAAKQRNFPFW-RISS 139 (155)
Q Consensus 122 -------eEe~aAk~~~~PFw-rI~~ 139 (155)
+=-.|-+..+.||. .+..
T Consensus 287 ~~~~~~~~~~~~l~~~~~~~lw~~~~ 312 (459)
T PLN02448 287 VSSAQMDEIAAGLRDSGVRFLWVARG 312 (459)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 11235667889975 5543
No 395
>COG1925 FruB Phosphotransferase system, HPr-related proteins [Carbohydrate transport and metabolism]
Probab=20.88 E-value=68 Score=23.51 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=19.2
Q ss_pred hhHHHHHH--HHhCCCceEEEecCCHHHHHHHHHc
Q psy11337 98 DSCFERIV--TRFGRKCTYVVIGDGQDEEAAAKQR 130 (155)
Q Consensus 98 escFerI~--~RFG~k~~yvvIGDG~eEe~aAk~~ 130 (155)
-|.+.-+. .+.|..++..+ +|.||++|-..+
T Consensus 45 kSim~lm~Lg~~~G~~i~i~a--~G~de~~Al~aL 77 (88)
T COG1925 45 KSIMGLMALGAKKGDEIELSA--EGEDEEEALEAL 77 (88)
T ss_pred HhHHHHHHhCcCCCCEEEEEE--eCccHHHHHHHH
Confidence 35554443 24466666665 888998886654
No 396
>PRK02794 DNA polymerase IV; Provisional
Probab=20.72 E-value=1.2e+02 Score=26.91 Aligned_cols=69 Identities=13% Similarity=0.190 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHHhCCCceE
Q psy11337 39 DNWLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFGRKCTY 114 (155)
Q Consensus 39 d~WLs~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RFG~k~~y 114 (155)
+.|+..++..|+.+.....-.-|=|+.++|.|.-.. ...+.|+-++ ....--++-..+|.+|||++.-+
T Consensus 343 ~~l~~~~~~ll~~~~~~~~vr~igv~~~~l~~~~~~----~q~~LF~~~~---~~~~~l~~~id~l~~r~G~~ai~ 411 (419)
T PRK02794 343 DRIFRTARELLEKETDGTAFRLIGIGVSDLSPADEA----DPPDLLDPQA---TRRAAAERAIDALRAKFGAAAVE 411 (419)
T ss_pred HHHHHHHHHHHHhcccCCCEEEEEEEEecCCCcccc----ccccccCcch---hhHHHHHHHHHHHHHhhCcchhh
Confidence 457777778887765445567888899999985331 1233444211 01111246788999999988654
No 397
>PRK07024 short chain dehydrogenase; Provisional
Probab=20.66 E-value=4.2e+02 Score=20.76 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=43.6
Q ss_pred HHHHHhHHhhhHHHHHHHHHHhhhhcCCCceEEEEeCCCchHHHHHHHHhhcccccccCccccccccChhhHHHHHHHHh
Q psy11337 29 QLRAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRF 108 (155)
Q Consensus 29 ~lr~e~e~~Td~WLs~A~k~L~~i~~r~~~vNVLVTt~qLVpaLaK~LLygL~~~fpieNIYSa~k~GKescFerI~~RF 108 (155)
++...++....+-+.....++.....+....-|.++|..-+ ++ .|-...|+++|..=+...+.+...+
T Consensus 102 ~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~--------~~----~~~~~~Y~asK~a~~~~~~~l~~e~ 169 (257)
T PRK07024 102 VFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGV--------RG----LPGAGAYSASKAAAIKYLESLRVEL 169 (257)
T ss_pred HHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhc--------CC----CCCCcchHHHHHHHHHHHHHHHHHh
Confidence 33333444333333344444544444444444556654322 11 2455689999999888888887665
Q ss_pred C-CCceEEEecCC
Q psy11337 109 G-RKCTYVVIGDG 120 (155)
Q Consensus 109 G-~k~~yvvIGDG 120 (155)
. .+++.++|--|
T Consensus 170 ~~~gi~v~~v~Pg 182 (257)
T PRK07024 170 RPAGVRVVTIAPG 182 (257)
T ss_pred hccCcEEEEEecC
Confidence 3 34555555543
No 398
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=20.64 E-value=1.5e+02 Score=26.03 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=27.7
Q ss_pred HHHHHHhC-CCceEEEecCCHHHHHHHHHcC-Cc-eeEeccc
Q psy11337 102 ERIVTRFG-RKCTYVVIGDGQDEEAAAKQRN-FP-FWRISSR 140 (155)
Q Consensus 102 erI~~RFG-~k~~yvvIGDG~eEe~aAk~~~-~P-FwrI~~~ 140 (155)
.+|.++|| +-..|.++.+..|-.++|+.++ .| +.|...|
T Consensus 9 K~ll~~~GIpvp~~~~~~~~~ea~~~~~~ig~~PvVvK~~~~ 50 (386)
T TIGR01016 9 KQIFAKYGIPVPRGYVATSVEEAEEIAAKLGAGPVVVKAQVH 50 (386)
T ss_pred HHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCcEEEEeccc
Confidence 56788898 5567777876544456788888 89 6777644
No 399
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=20.53 E-value=4.5e+02 Score=23.85 Aligned_cols=59 Identities=22% Similarity=0.363 Sum_probs=41.3
Q ss_pred cccccccChhhHHHHHHHH----hCC-CceEEEecCCH---HHHH---HHHHcCCceeEecccccHHHHHH
Q psy11337 89 IYSSTKIGKDSCFERIVTR----FGR-KCTYVVIGDGQ---DEEA---AAKQRNFPFWRISSRSDLAALYH 148 (155)
Q Consensus 89 IYSa~k~GKescFerI~~R----FG~-k~~yvvIGDG~---eEe~---aAk~~~~PFwrI~~~~Dl~~L~~ 148 (155)
+.+.+.+||-.-...|..+ +|. ++.+ +-.|.. .-|+ =|+.+++|+-.+....|+.....
T Consensus 142 lvGptGvGKTTtiakLA~~~~~~~G~~~V~l-it~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~ 211 (374)
T PRK14722 142 LMGPTGVGKTTTTAKLAARCVMRFGASKVAL-LTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA 211 (374)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCCeEEE-EecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH
Confidence 5688999999999998765 464 4544 445553 1222 37889999999988888765443
No 400
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=20.49 E-value=56 Score=27.11 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=14.5
Q ss_pred HHHHHHHHhCCCceEEEecCC
Q psy11337 100 CFERIVTRFGRKCTYVVIGDG 120 (155)
Q Consensus 100 cFerI~~RFG~k~~yvvIGDG 120 (155)
=..-|.+|.|.+|+.|++||-
T Consensus 135 ~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 135 ELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHHHHHTTB-TT-EEEEEE--
T ss_pred HHHHHHcccCCCcEEEEecCc
Confidence 345678999999999999996
No 401
>TIGR01003 PTS_HPr_family Phosphotransferase System HPr (HPr) Family. The HPr family are bacterial proteins (or domains of proteins) which function in phosphoryl transfer system (PTS) systems. They include energy-coupling components which catalyze sugar uptake via a group translocation mechanism. The functions of most of these proteins are not known, but they presumably function in PTS-related regulatory capacities. All seed members are stand-alone HPr proteins, although the model also recognizes HPr domains of PTS fusion proteins. This family includes the related NPr protein.
Probab=20.45 E-value=73 Score=22.23 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=12.6
Q ss_pred eEEEecCCHHHHHHHHHc
Q psy11337 113 TYVVIGDGQDEEAAAKQR 130 (155)
Q Consensus 113 ~yvvIGDG~eEe~aAk~~ 130 (155)
+..+..+|.||++|...+
T Consensus 60 ~i~i~~~G~de~~a~~~l 77 (82)
T TIGR01003 60 EVTVSADGEDEAEALEAL 77 (82)
T ss_pred EEEEEEeCcCHHHHHHHH
Confidence 445556788898887764
No 402
>PRK05884 short chain dehydrogenase; Provisional
Probab=20.41 E-value=4.2e+02 Score=20.65 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=28.7
Q ss_pred ccCccccccccChhhHHHHHHHHhCC-CceEEEecCCH
Q psy11337 85 DVENIYSSTKIGKDSCFERIVTRFGR-KCTYVVIGDGQ 121 (155)
Q Consensus 85 pieNIYSa~k~GKescFerI~~RFG~-k~~yvvIGDG~ 121 (155)
|-...|+++|-+=..--+-+...+++ .++...|.-|.
T Consensus 135 ~~~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~ 172 (223)
T PRK05884 135 PAGSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGR 172 (223)
T ss_pred CCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCc
Confidence 34578999999988888888888864 47777777774
No 403
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=20.38 E-value=1.9e+02 Score=22.17 Aligned_cols=48 Identities=27% Similarity=0.441 Sum_probs=38.1
Q ss_pred cccChhhHHHHHHHHhCCCceEEEecCCHH-HHH------HHHHcCCceeEecccccH
Q psy11337 93 TKIGKDSCFERIVTRFGRKCTYVVIGDGQD-EEA------AAKQRNFPFWRISSRSDL 143 (155)
Q Consensus 93 ~k~GKescFerI~~RFG~k~~yvvIGDG~e-Ee~------aAk~~~~PFwrI~~~~Dl 143 (155)
-+.|-..|...|.. ++..+|+|.-..| ++- -+..+|.|+..+.+-.+|
T Consensus 28 i~~G~~e~~Kai~~---g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~L 82 (116)
T COG1358 28 LKKGTNEVTKAIER---GKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKEL 82 (116)
T ss_pred chhhHHHHHHHHHc---CCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHH
Confidence 46788899999887 7899999988877 443 455799999999887654
No 404
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=20.37 E-value=2.1e+02 Score=25.57 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=35.5
Q ss_pred cccccccChhhHHHHHHHHhCCCceEEEecCCHHHHHHHHHcCCceeEecc--cccHHHHHHHh
Q psy11337 89 IYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAAKQRNFPFWRISS--RSDLAALYHAL 150 (155)
Q Consensus 89 IYSa~k~GKescFerI~~RFG~k~~yvvIGDG~eEe~aAk~~~~PFwrI~~--~~Dl~~L~~al 150 (155)
|++-+-.||-+.-++....+.+.. |+ | +..+|.|.|+. .||..+||.++
T Consensus 66 ivG~snnGKT~Ii~rF~~~hp~~~------d~-~------~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 66 IVGDSNNGKTMIIERFRRLHPPQS------DE-D------AERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred EecCCCCcHHHHHHHHHHHCCCCC------CC-C------CccccEEEEecCCCCChHHHHHHH
Confidence 577888999998888888875431 22 1 23569988887 67788888775
No 405
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=20.10 E-value=1e+02 Score=24.82 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHhC-CCceEEEe
Q psy11337 97 KDSCFERIVTRFG-RKCTYVVI 117 (155)
Q Consensus 97 KescFerI~~RFG-~k~~yvvI 117 (155)
.+.|++|+.+||| -++-++||
T Consensus 104 ~~~~~~~~~~r~g~~ni~~a~v 125 (196)
T PF01076_consen 104 FEDSLEWLQERYGNENIVSAVV 125 (196)
T ss_pred HHHHHHHHHHHCCchhEEEEEE
Confidence 4577889999999 66666665
No 406
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=20.01 E-value=2.5e+02 Score=17.85 Aligned_cols=11 Identities=36% Similarity=0.302 Sum_probs=6.6
Q ss_pred cccccHHHHHH
Q psy11337 138 SSRSDLAALYH 148 (155)
Q Consensus 138 ~~~~Dl~~L~~ 148 (155)
....|+.+||+
T Consensus 63 gg~~~~~~~~~ 73 (75)
T cd03418 63 GGCDDLYALER 73 (75)
T ss_pred eChHHHHHHHh
Confidence 34566776664
Done!