RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11337
(155 letters)
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing,
cytoplasm, developmental protein, magnesium, nucleus,
polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Length = 274
Score = 214 bits (545), Expect = 5e-71
Identities = 89/148 (60%), Positives = 114/148 (77%)
Query: 8 ETTARLDACGLLGPAKREEWLQLRAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQ 67
T + + GL+G KRE WLQLRAE+E++TD WL+ ++K L LIN RP+C NV+V TTQ
Sbjct: 127 YNTYKNNVGGLIGTPKRETWLQLRAELEALTDLWLTHSLKALNLINSRPNCVNVLVTTTQ 186
Query: 68 LIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAA 127
LIPAL+K++L+GL +F +ENIYS+TK GK+SCFERI+ RFGRK YVVIGDG +EE A
Sbjct: 187 LIPALAKVLLYGLGSVFPIENIYSATKTGKESCFERIMQRFGRKAVYVVIGDGVEEEQGA 246
Query: 128 KQRNFPFWRISSRSDLAALYHALDNGFL 155
K+ N PFWRIS +DL AL HAL+ +L
Sbjct: 247 KKHNMPFWRISCHADLEALRHALELEYL 274
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.58
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 12/31 (38%)
Query: 8 ETTARL---DACGLLGPAKREEWLQLRAEIE 35
+ + +L D+ PA L ++A +E
Sbjct: 26 QASLKLYADDS----APA-----LAIKATME 47
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein
structure initiative, NE SGX research center for
structural genomics, nysgxrc; HET: MSE RB0; 2.30A
{Escherichia coli} PDB: 2ajt_A 2hxg_A
Length = 500
Score = 28.5 bits (63), Expect = 1.1
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 101 FERIVTRFGRKCTYVVIGDGQDEEAAAKQRNF 132
F I R ++ V G QD++A + ++
Sbjct: 133 FGFIGARMRQQHAVVT-GHWQDKQAHERIGSW 163
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside
mannosyltransferase...; GT-B fold,
alpha-mannosyltransferase; HET: GDD; 2.00A
{Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Length = 394
Score = 28.1 bits (63), Expect = 1.2
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 9/46 (19%)
Query: 113 TYVVIGDGQDEEAAAKQRN-------FPFWRISSRSDLAALYHALD 151
+++G G+ E + F D+ A D
Sbjct: 231 QLLIVGSGRYESTLRRLATDVSQNVKFLGRL--EYQDMINTLAAAD 274
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4
glycosyltransferase, rossmann fold, complex; HET: GDP;
2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Length = 406
Score = 28.0 bits (63), Expect = 1.4
Identities = 6/43 (13%), Positives = 16/43 (37%), Gaps = 8/43 (18%)
Query: 115 VVIGDGQDEEAAAKQRN------FPFWRISSRSDLAALYHALD 151
+++G G ++E + + F + A+ + D
Sbjct: 244 LIVGRGDEDELREQAGDLAGHLRFLGQV--DDATKASAMRSAD 284
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus
stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Length = 413
Score = 25.9 bits (56), Expect = 6.0
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 115 VVIGDGQDEEAAAKQRNFPFWRISSRSDLAALYHALD 151
+ +G+ + A K + + D A L
Sbjct: 280 ISVGEKHKDIALGKGIHLNSLGKLTLEDYADLLKRSS 316
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio
parahaemolyticus RIMD 2210633, STR genomics, PSI-2,
protein structure initiative; 1.48A {Vibrio
parahaemolyticus}
Length = 165
Score = 25.4 bits (55), Expect = 6.9
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 74 KIMLFGLSGIFDVENIYSSTK--IGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAAKQRN 131
KI + DV+N+Y + + + + + ++ V KQR
Sbjct: 11 KIAIL-----VDVQNVYYTCREAYRSNFDYNQFWYVATQEKEVVSAKAYAIASNDPKQRQ 65
Query: 132 FPFW 135
F
Sbjct: 66 FHHI 69
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 25.3 bits (56), Expect = 7.1
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 102 ERIVTRFGRKCTYVVIGDGQDEEA 125
E V + T+ VI + +E
Sbjct: 39 EEKVNAYASYATHAVIANATEENE 62
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP
binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A*
3r5h_A*
Length = 389
Score = 25.6 bits (57), Expect = 7.1
Identities = 5/54 (9%), Positives = 16/54 (29%), Gaps = 14/54 (25%)
Query: 114 YVVIGDGQDEEAAAKQRNFPF--------------WRISSRSDLAALYHALDNG 153
Y ++ + + A + ++P + S +D+ +
Sbjct: 130 YRLVQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLANAA 183
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 25.6 bits (57), Expect = 7.4
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 7 NETTARLDACGLLGPAKREEWLQLRAE 33
NETT L + W +R +
Sbjct: 212 NETTTNLIGNAIEDFTLYNSWDYVREK 238
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus,
transcription; 1.90A {Encephalitozoon cuniculi} PDB:
3oci_A 3oc3_C
Length = 218
Score = 25.4 bits (55), Expect = 8.2
Identities = 10/48 (20%), Positives = 17/48 (35%)
Query: 67 QLIPALSKIMLFGLSGIFDVENIYSSTKIGKDSCFERIVTRFGRKCTY 114
+ + K+ F ++NI SS I E + C+Y
Sbjct: 116 RYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSY 163
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.416
Gapped
Lambda K H
0.267 0.0549 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,415,336
Number of extensions: 132024
Number of successful extensions: 385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 18
Length of query: 155
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 69
Effective length of database: 4,300,587
Effective search space: 296740503
Effective search space used: 296740503
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)