RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11337
         (155 letters)



>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
           [TaxId: 4682]}
          Length = 425

 Score = 25.0 bits (54), Expect = 5.3
 Identities = 14/125 (11%), Positives = 26/125 (20%), Gaps = 35/125 (28%)

Query: 29  QLRAEIESVTDNWLSLAIKCLTLINQRPSCTNVIVITTQLIPALSKIMLFGLSGIFDVEN 88
            LR  +     +   +          +      I++ T     +SK    G SG      
Sbjct: 211 LLRHAVIKGCKSIYDMVYYWPHYTPIKYKADEDILLFT-----MSKF--TGHSGS----- 258

Query: 89  IYSSTKIGKDSCFERIVTRFGRKCTYVVIGDGQDEEAAAKQRNFPFWRISSRSDLAALYH 148
                                 +  + +I D                     + L +L  
Sbjct: 259 ----------------------RFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLK- 295

Query: 149 ALDNG 153
            L   
Sbjct: 296 VLKEV 300


>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus)
          [TaxId: 9031]}
          Length = 117

 Score = 23.9 bits (52), Expect = 6.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 11 ARLDACGLLGPAKREEWLQLRAEIESVTD 39
          AR  A     P +R++ L+   EI ++T 
Sbjct: 44 ARKVAELCEEPKERDDILRSLGEISALTA 72


>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK
           {Escherichia coli [TaxId: 562]}
          Length = 274

 Score = 24.1 bits (51), Expect = 7.8
 Identities = 4/31 (12%), Positives = 8/31 (25%)

Query: 114 YVVIGDGQDEEAAAKQRNFPFWRISSRSDLA 144
            +  G  Q E          +  + +  D  
Sbjct: 234 LLEHGWQQGEAVRQAFILAGYHDVETCRDYG 264


>d1qzua_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase
           (PPC decarboxylase, halotolerance protein Hal3a) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 181

 Score = 23.8 bits (51), Expect = 9.9
 Identities = 5/23 (21%), Positives = 9/23 (39%)

Query: 15  ACGLLGPAKREEWLQLRAEIESV 37
            CG  G     E   +  +++ V
Sbjct: 159 VCGDEGLGAMAEVGTIVDKVKEV 181


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0527    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 586,282
Number of extensions: 24730
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 5
Length of query: 155
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,336,656
Effective search space: 102922512
Effective search space used: 102922512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.1 bits)