BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11338
         (206 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3V5S|A Chain A, Structure Of SodiumCALCIUM EXCHANGER FROM METHANOCOCCUS
           JANNASCHII
 pdb|3V5U|A Chain A, Structure Of SodiumCALCIUM EXCHANGER FROM
           METHANOCALDOCOCCUS Jannaschii Dsm 2661
          Length = 320

 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 4/103 (3%)

Query: 29  LRWTIPPCHYETYQKYV----TLTFVMCIFWIAVCSYLIAWMITILGNGEEGNTLQVPDS 84
           LRWT+     E  +       ++ F + +  I +   L+   + + G  +    L + D 
Sbjct: 139 LRWTVKNGSAEIEENNDKNNPSVVFSLVLLIIGLIGVLVGAELFVDGAKKIALALDISDK 198

Query: 85  VMGLTFIAAGMSIPETVSSVIVAGQGQGSMALSNSWGSSTFDI 127
           V+G T +A G S+PE + S+  A +  G M L N  GS+  DI
Sbjct: 199 VIGFTLVAFGTSLPELMVSLAAAKRNLGGMVLGNVIGSNIADI 241



 Score = 30.4 bits (67), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 36/70 (51%)

Query: 69  ILGNGEEGNTLQVPDSVMGLTFIAAGMSIPETVSSVIVAGQGQGSMALSNSWGSSTFDIL 128
           +LG+        V + V+G T +A G S+PE ++S   +      +++ N+ GS   +I 
Sbjct: 24  VLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIG 83

Query: 129 LCLGIPWLIK 138
           L LG+  +I 
Sbjct: 84  LVLGLSAIIS 93


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,797,336
Number of Sequences: 62578
Number of extensions: 212122
Number of successful extensions: 457
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 3
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)