Query psy11338
Match_columns 206
No_of_seqs 123 out of 1536
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 15:49:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 99.9 1.5E-21 5.2E-26 169.5 12.8 131 46-200 165-296 (320)
2 3v5u_A Uncharacterized membran 99.8 7.3E-21 2.5E-25 165.2 11.7 134 46-201 6-139 (320)
3 3o7q_A L-fucose-proton symport 14.5 4.8E+02 0.016 21.0 7.2 35 77-111 54-90 (438)
4 2l6x_A GPR, green-light absorb 9.0 4.7E+02 0.016 20.7 5.1 22 12-33 74-95 (243)
5 3ddl_A Xanthorhodopsin; carote 7.6 5.8E+02 0.02 20.6 5.1 19 13-31 91-109 (273)
6 1p3q_Q VPS9P, vacuolar protein 7.2 2.6E+02 0.009 17.1 2.1 23 98-120 28-50 (54)
7 3ug9_A Archaeal-type opsin 1, 6.5 9.5E+02 0.032 20.1 5.9 20 12-31 133-152 (333)
8 3arc_Y Protein YCF12; PSII, me 4.7 5.1E+02 0.018 13.7 2.5 20 92-111 9-28 (29)
9 1j5u_A Archease, possible chap 4.5 2.6E+02 0.009 20.3 1.1 17 92-108 27-43 (136)
10 2knc_B Integrin beta-3; transm 4.1 8.8E+02 0.03 15.6 5.5 19 47-65 15-33 (79)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.86 E-value=1.5e-21 Score=169.50 Aligned_cols=131 Identities=23% Similarity=0.295 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCchhHHHHHHHHhcChhHHHHHHHHHhcCCCCchhhhccchhhh
Q psy11338 46 TLTFVMCIFWIAVCSYLIAWMITILGNGEEGNTLQVPDSVMGLTFIAAGMSIPETVSSVIVAGQGQGSMALSNSWGSSTF 125 (206)
Q Consensus 46 ~~~f~~sl~~i~~~a~~lv~~~~~~~~~~~~~~lgis~~v~GltilA~gtS~pel~~~v~~a~~G~~~lAlg~iiGs~if 125 (206)
...++.++..+..+++.+++.++.++ +.+|+||.++|+|++|+|||+||+++++.+++||+.|+|+||++|||+|
T Consensus 165 ~~~l~~~l~~l~~~a~~lv~~~~~ia-----~~~gis~~~iGltlva~gtslPE~~~sv~aa~~g~~~laig~iiGS~if 239 (320)
T 3v5u_A 165 LVLLIIGLIGVLVGAELFVDGAKKIA-----LALDISDKVIGFTLVAFGTSLPELMVSLAAAKRNLGGMVLGNVIGSNIA 239 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHTTCCCHHHHHHTHHHHHTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHH-----HHhCCchHHHHHHHHHHHhccHHHHHHHHHHHcCCCcHHHHHHHhHHHH
Confidence 46678899999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHhhhhhhcccCCCCCCCCceEEecCCchHHHHHHHHHHHHHHHHHHHHcCCeecHHHHHHHHHHHHh-h
Q psy11338 126 DILLCLGIPWLIKSTYFPNQLGVDGHYVQISSHGLEYSSFALLLILFLVYSILYFNKFKLDKKVRIYRVNMKNV-T 200 (206)
Q Consensus 126 nill~lGl~~ll~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~l~~~l~~~~~~~~~i~r~~g~~Li~~Y~~-~ 200 (206)
|+++++|++++++|... + .++..+++.....+. ...+|++++|++|..++..|++ |
T Consensus 240 n~~~v~g~~~li~p~~~-------------~----~~d~~~~l~~~~ll~--~~~~~~~i~~~eG~~ll~~Y~~~y 296 (320)
T 3v5u_A 240 DIGGALAVGSLFMHLPA-------------E----NVQMAVLVIMSLLLY--LFAKYSKIGRWQGILFLALYIIAI 296 (320)
T ss_dssp HHHTHHHHHHHHSCBCC-------------C----HHHHHHHHHHHHHHH--HHHHHSCBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccc-------------h----HHHHHHHHHHHHHHH--HHHhCCcCcHHHHHHHHHHHHHHH
Confidence 99999999999876532 1 244433333333222 2467899999999999999998 5
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.84 E-value=7.3e-21 Score=165.24 Aligned_cols=134 Identities=17% Similarity=0.198 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCchhHHHHHHHHhcChhHHHHHHHHHhcCCCCchhhhccchhhh
Q psy11338 46 TLTFVMCIFWIAVCSYLIAWMITILGNGEEGNTLQVPDSVMGLTFIAAGMSIPETVSSVIVAGQGQGSMALSNSWGSSTF 125 (206)
Q Consensus 46 ~~~f~~sl~~i~~~a~~lv~~~~~~~~~~~~~~lgis~~v~GltilA~gtS~pel~~~v~~a~~G~~~lAlg~iiGs~if 125 (206)
++.++.++..+..+++.+++.++.++ +++|+||.+.|+|++|+|||+||+++++.++++|++|+|+||++|||+|
T Consensus 6 ~~~l~~g~~~l~~~a~~lv~~~~~la-----~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~ 80 (320)
T 3v5u_A 6 VGYFLLGLILLYYGSDWFVLGSERIA-----RHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCIC 80 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHH
Confidence 35678899999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHhhhhhhcccCCCCCCCCceEEecCCchHHHHHHHHHHHHHHHHHHHHcCCeecHHHHHHHHHHHHhhc
Q psy11338 126 DILLCLGIPWLIKSTYFPNQLGVDGHYVQISSHGLEYSSFALLLILFLVYSILYFNKFKLDKKVRIYRVNMKNVTK 201 (206)
Q Consensus 126 nill~lGl~~ll~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~l~~~l~~~~~~~~~i~r~~g~~Li~~Y~~~~ 201 (206)
|+++++|++.++++... + +.+.++..+++.+...+ .....++ ++|++|++|+..|+.|-
T Consensus 81 nillvlG~~~li~p~~v-~-------------~~~~~d~~~~l~~~~~l--~~~~~~g-is~~~g~~Ll~~Y~~yl 139 (320)
T 3v5u_A 81 NIGLVLGLSAIISPIIV-D-------------KNLQKNILVYLLFVIFA--AVIGIDG-FSWIDGVVLLILFIIYL 139 (320)
T ss_dssp HHHTHHHHHHHHSCBCC-C-------------HHHHHHHHHHHHHHHHH--HHHTTTC-BCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccc-c-------------HHHHHHHHHHHHHHHHH--HHHHHcc-cHHHHHHHHHHHHHHHH
Confidence 99999999999988653 1 22345554444443333 2334566 99999999999998873
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=14.47 E-value=4.8e+02 Score=21.01 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=25.2
Q ss_pred cccCCCchhHHHHHH--HHhcChhHHHHHHHHHhcCC
Q psy11338 77 NTLQVPDSVMGLTFI--AAGMSIPETVSSVIVAGQGQ 111 (206)
Q Consensus 77 ~~lgis~~v~Gltil--A~gtS~pel~~~v~~a~~G~ 111 (206)
+.+|+++...|.... .++..+........+-|-|.
T Consensus 54 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~ 90 (438)
T 3o7q_A 54 QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSY 90 (438)
T ss_dssp HHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 889999998887644 44666667777776667664
No 4
>2l6x_A GPR, green-light absorbing proteorhodopsin; membrane protein structure, cell-free expre proton transport; HET: LYR; NMR {Uncultured marine gamma PROTEOBACTERIUEBAC31A08}
Probab=9.04 E-value=4.7e+02 Score=20.68 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHhhhhhhc
Q psy11338 12 TIRSKIQWLCMVPLMRILRWTI 33 (206)
Q Consensus 12 ~~~~~~~~~l~~p~~~~~~~~~ 33 (206)
+..|++=|+++.|+.++-+.-+
T Consensus 74 ~~~RYidWllTvPLllvel~Li 95 (243)
T 2l6x_A 74 TVFRYIDWLLTVPLLICEFYLI 95 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhcHHHHHHHHHHHHHHH
Confidence 5679999999999997744434
No 5
>3ddl_A Xanthorhodopsin; carotenoid, ION pump, light-harvesting, antenna, retinal, transport protein; HET: SXN UNL RET PX4 PCW; 1.90A {Salinibacter ruber}
Probab=7.58 E-value=5.8e+02 Score=20.59 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHhhhhh
Q psy11338 13 IRSKIQWLCMVPLMRILRW 31 (206)
Q Consensus 13 ~~~~~~~~l~~p~~~~~~~ 31 (206)
..|++=|++++|+.++-+.
T Consensus 91 ~~RYIDWlLTvPLllve~~ 109 (273)
T 3ddl_A 91 AYRYVDWLLTVPLLTVELV 109 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhHHHHHHHHHHHHH
Confidence 3699999999999988444
No 6
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=7.17 E-value=2.6e+02 Score=17.11 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhcCCCCchhhhcc
Q psy11338 98 PETVSSVIVAGQGQGSMALSNSW 120 (206)
Q Consensus 98 pel~~~v~~a~~G~~~lAlg~ii 120 (206)
+|++-++.-+++|+.+-++-+++
T Consensus 28 ~evI~~Vl~a~~G~~~~~IdaLL 50 (54)
T 1p3q_Q 28 PSLIEDVCIAAASRIGPCVDALL 50 (54)
T ss_dssp HHHHHHHHHHSCC--CGGGC---
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Confidence 57788888899999888877665
No 7
>3ug9_A Archaeal-type opsin 1, archaeal-type opsin 2; microbialrhodopsin, seven-transmembrane, light-gated cation membrane protein; HET: RET OLA; 2.30A {Chlamydomonas reinhardtii}
Probab=6.48 E-value=9.5e+02 Score=20.14 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHhhhhh
Q psy11338 12 TIRSKIQWLCMVPLMRILRW 31 (206)
Q Consensus 12 ~~~~~~~~~l~~p~~~~~~~ 31 (206)
...|++=|+++.|+.++-+.
T Consensus 133 ~~~RYIDWlLTvPLLLvel~ 152 (333)
T 3ug9_A 133 VWLRYAEWLLTCPVILIHLS 152 (333)
T ss_dssp CHHHHHHHHHHHHHHHHHHT
T ss_pred eeehhhCHHHHHHHHHHHHH
Confidence 46799999999999988444
No 8
>3arc_Y Protein YCF12; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3a0b_Y* 3a0h_Y*
Probab=4.66 E-value=5.1e+02 Score=13.74 Aligned_cols=20 Identities=10% Similarity=-0.006 Sum_probs=10.3
Q ss_pred HHhcChhHHHHHHHHHhcCC
Q psy11338 92 AAGMSIPETVSSVIVAGQGQ 111 (206)
Q Consensus 92 A~gtS~pel~~~v~~a~~G~ 111 (206)
++-...+-++...-++|+|+
T Consensus 9 ~lIv~aGP~VI~lLa~r~Gn 28 (29)
T 3arc_Y 9 AMIGIAGPMIIFLLAVRRGN 28 (29)
T ss_dssp HHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhcCChheeehhhhcCC
Confidence 33333445555566666664
No 9
>1j5u_A Archease, possible chaperone; structural genomics, joint center for structural G JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: d.208.1.1
Probab=4.50 E-value=2.6e+02 Score=20.29 Aligned_cols=17 Identities=18% Similarity=0.012 Sum_probs=14.0
Q ss_pred HHhcChhHHHHHHHHHh
Q psy11338 92 AAGMSIPETVSSVIVAG 108 (206)
Q Consensus 92 A~gtS~pel~~~v~~a~ 108 (206)
++|.|++|++.+.+.|.
T Consensus 27 a~G~tleEaFe~aa~Am 43 (136)
T 1j5u_A 27 ISGNSYEELLEEARNIL 43 (136)
T ss_dssp EEESSHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHH
Confidence 78999999998877654
No 10
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=4.06 E-value=8.8e+02 Score=15.63 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11338 47 LTFVMCIFWIAVCSYLIAW 65 (206)
Q Consensus 47 ~~f~~sl~~i~~~a~~lv~ 65 (206)
++.+++++.++....++-.
T Consensus 15 ~gvi~gilliGllllliwk 33 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555556655555544444
Done!