Query psy11338
Match_columns 206
No_of_seqs 123 out of 1536
Neff 7.3
Searched_HMMs 13730
Date Fri Aug 16 15:50:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11338.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11338hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 28.0 53 0.0039 24.8 6.1 35 78-112 53-89 (447)
2 d1xioa_ f.13.1.1 (A:) Sensory 7.7 3.3E+02 0.024 19.2 5.5 19 12-30 69-87 (226)
3 d1vg0a1 c.3.1.3 (A:3-444,A:558 6.6 98 0.0072 25.6 2.0 32 92-123 11-44 (491)
4 d1rh5a_ f.41.1.1 (A:) Preprote 5.5 5.2E+02 0.038 20.1 6.0 75 15-98 107-182 (422)
5 d1o82a_ a.64.2.1 (A:) Bacterio 4.8 2.1E+02 0.016 16.4 2.2 26 76-101 2-29 (70)
6 d2e74f1 f.23.25.1 (F:1-32) Pet 4.1 1.9E+02 0.014 14.1 1.3 10 86-95 13-22 (32)
7 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.7 7.2E+02 0.052 17.8 6.9 11 190-200 59-69 (248)
8 d1jw3a_ d.208.1.1 (A:) Hypothe 3.2 1.7E+02 0.013 19.4 0.8 18 92-109 17-34 (140)
9 d1adta3 g.51.1.1 (A:386-529) S 2.9 2.6E+02 0.019 19.0 1.5 15 96-110 87-101 (144)
10 d1j5ua_ d.208.1.1 (A:) Hypothe 2.9 2.2E+02 0.016 18.6 1.1 14 92-105 18-31 (127)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=27.99 E-value=53 Score=24.83 Aligned_cols=35 Identities=6% Similarity=0.083 Sum_probs=25.7
Q ss_pred ccCCCchhHHHH--HHHHhcChhHHHHHHHHHhcCCC
Q psy11338 78 TLQVPDSVMGLT--FIAAGMSIPETVSSVIVAGQGQG 112 (206)
Q Consensus 78 ~lgis~~v~Glt--ilA~gtS~pel~~~v~~a~~G~~ 112 (206)
..|+|++-.|.. ...+|..+...+....+-|.|.-
T Consensus 53 ~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r 89 (447)
T d1pw4a_ 53 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR 89 (447)
T ss_dssp SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 479999988874 44557777778887777777743
No 2
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=7.75 E-value=3.3e+02 Score=19.19 Aligned_cols=19 Identities=21% Similarity=0.494 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHhhhh
Q psy11338 12 TIRSKIQWLCMVPLMRILR 30 (206)
Q Consensus 12 ~~~~~~~~~l~~p~~~~~~ 30 (206)
...|++=|+++.|+.++..
T Consensus 69 ~~~RYiDW~lTtPlll~~l 87 (226)
T d1xioa_ 69 HYARYIDWMVTTPLLLLSL 87 (226)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHcccHHHHHH
Confidence 4558899999999887633
No 3
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.59 E-value=98 Score=25.58 Aligned_cols=32 Identities=19% Similarity=0.423 Sum_probs=23.4
Q ss_pred HHhcChhHHHHHHHHHhcCCCC--chhhhccchh
Q psy11338 92 AAGMSIPETVSSVIVAGQGQGS--MALSNSWGSS 123 (206)
Q Consensus 92 A~gtS~pel~~~v~~a~~G~~~--lAlg~iiGs~ 123 (206)
-+||.++|-+.+.+.+|+|+-- +-=.+-+|++
T Consensus 11 I~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~ 44 (491)
T d1vg0a1 11 VIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGN 44 (491)
T ss_dssp EECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG
T ss_pred EECCChHHHHHHHHHHhcCCEEEEecCCCcCCCc
Confidence 3699999999999999999532 2234555654
No 4
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.47 E-value=5.2e+02 Score=20.08 Aligned_cols=75 Identities=12% Similarity=0.084 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhhhhhh-cCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCchhHHHHHHHH
Q psy11338 15 SKIQWLCMVPLMRILRWT-IPPCHYETYQKYVTLTFVMCIFWIAVCSYLIAWMITILGNGEEGNTLQVPDSVMGLTFIAA 93 (206)
Q Consensus 15 ~~~~~~l~~p~~~~~~~~-~p~~~~~~~~~~~~~~f~~sl~~i~~~a~~lv~~~~~~~~~~~~~~lgis~~v~GltilA~ 93 (206)
++....++++++++.... +-......... ...+..++.+..++..+.|..|.+. + .|+...+.=+++...
T Consensus 107 ~~~tr~ltl~la~iQa~~~~~~~~~~~~~~---~~~~~iv~~L~aGt~~lmwL~E~It-----~-~GiGnGiSLiI~~gI 177 (422)
T d1rh5a_ 107 QGCQKLLSIIMCFVEAVLFVGAGAFGILTP---LLAFLVIIQIAFGSIILIYLDEIVS-----K-YGIGSGIGLFIAAGV 177 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHH-----H-HSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHh-----h-cCcccchHHHHHHHH
Confidence 456668888888763322 11111111111 1222335667778888899999998 7 899877766666666
Q ss_pred hcChh
Q psy11338 94 GMSIP 98 (206)
Q Consensus 94 gtS~p 98 (206)
..++|
T Consensus 178 ~~~i~ 182 (422)
T d1rh5a_ 178 SQTIF 182 (422)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 5
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=4.81 E-value=2.1e+02 Score=16.36 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=15.3
Q ss_pred ccccCCCchhHHHHH--HHHhcChhHHH
Q psy11338 76 GNTLQVPDSVMGLTF--IAAGMSIPETV 101 (206)
Q Consensus 76 ~~~lgis~~v~Glti--lA~gtS~pel~ 101 (206)
++.+|||.++.|..+ +-.|..+..++
T Consensus 2 akefgipa~ia~~vlniv~agg~vttiv 29 (70)
T d1o82a_ 2 AKEFGIPAAVAGTVLNVVEAGGWVTTIV 29 (70)
T ss_dssp HHHHCCCHHHHHHHHHHHHTTCCHHHHH
T ss_pred chhhCCcHHHHHHHHHhhccCcchhhHH
Confidence 367899988887653 23344444333
No 6
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.15 E-value=1.9e+02 Score=14.13 Aligned_cols=10 Identities=40% Similarity=0.933 Sum_probs=6.1
Q ss_pred HHHHHHHHhc
Q psy11338 86 MGLTFIAAGM 95 (206)
Q Consensus 86 ~GltilA~gt 95 (206)
.|++++.||-
T Consensus 13 fglifvgwgl 22 (32)
T d2e74f1 13 FGLIFVGWGL 22 (32)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHhHH
Confidence 4666666663
No 7
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.65 E-value=7.2e+02 Score=17.79 Aligned_cols=11 Identities=0% Similarity=-0.082 Sum_probs=8.3
Q ss_pred HHHHHHHHHhh
Q psy11338 190 RIYRVNMKNVT 200 (206)
Q Consensus 190 g~~Li~~Y~~~ 200 (206)
|++++..|.+|
T Consensus 59 G~~~l~~Fvi~ 69 (248)
T d2r6gf1 59 GMAGMGLFVLF 69 (248)
T ss_dssp HHHHHHHHTHH
T ss_pred HHHHHHHHHHH
Confidence 78887777765
No 8
>d1jw3a_ d.208.1.1 (A:) Hypothetical protein MTH1598 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=3.16 E-value=1.7e+02 Score=19.40 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=14.2
Q ss_pred HHhcChhHHHHHHHHHhc
Q psy11338 92 AAGMSIPETVSSVIVAGQ 109 (206)
Q Consensus 92 A~gtS~pel~~~v~~a~~ 109 (206)
++|.|++|++.+.+.+..
T Consensus 17 ~~g~tleelf~~aa~am~ 34 (140)
T d1jw3a_ 17 AYGHDLEEVFENAALAMF 34 (140)
T ss_dssp EECSSSHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHH
Confidence 688999999988776543
No 9
>d1adta3 g.51.1.1 (A:386-529) Second Zn-domain of early E2A DNA-binding protein, ADDBP {Human adenovirus type 5 [TaxId: 28285]}
Probab=2.90 E-value=2.6e+02 Score=18.99 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=13.2
Q ss_pred ChhHHHHHHHHHhcC
Q psy11338 96 SIPETVSSVIVAGQG 110 (206)
Q Consensus 96 S~pel~~~v~~a~~G 110 (206)
|.||+..++..+|+=
T Consensus 87 Sa~Dl~~Alqlak~~ 101 (144)
T d1adta3 87 SAPDLLNALVMVRSL 101 (144)
T ss_dssp EHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 589999999999874
No 10
>d1j5ua_ d.208.1.1 (A:) Hypothetical protein TM1083 {Thermotoga maritima [TaxId: 2336]}
Probab=2.86 E-value=2.2e+02 Score=18.56 Aligned_cols=14 Identities=21% Similarity=0.190 Sum_probs=11.6
Q ss_pred HHhcChhHHHHHHH
Q psy11338 92 AAGMSIPETVSSVI 105 (206)
Q Consensus 92 A~gtS~pel~~~v~ 105 (206)
++|.|++|++.+.+
T Consensus 18 ~~G~tleelF~~Aa 31 (127)
T d1j5ua_ 18 ISGNSYEELLEEAR 31 (127)
T ss_dssp EEESSHHHHHHHHH
T ss_pred EEeCCHHHHHHHHH
Confidence 78999999998753
Done!