RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11338
(206 letters)
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 111 bits (278), Expect = 2e-28
Identities = 64/177 (36%), Positives = 105/177 (59%), Gaps = 11/177 (6%)
Query: 11 KTIRSKIQWLCMVPLMRILRWTIPPCHYETYQKYVTLTFVMCIFWIAVCSYLIAWMITIL 70
+T + + +L ++P++ L T+P + +K+ +TF+ I WIA+ SYL+ W
Sbjct: 900 ETRQKQAIYLFLLPIVFPLWLTVPDVRRQEARKFFVITFLGSIMWIAMFSYLMVWWAH-- 957
Query: 71 GNGEEGNTLQVPDSVMGLTFIAAGMSIPETVSSVIVAGQGQGSMALSNSWGSSTFDILLC 130
+ G T+ + + +MGLT +AAG SIP+ ++SVIVA +G G MA+S+S GS+ FDI +
Sbjct: 958 ---QVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVG 1014
Query: 131 LGIPWLIKSTYFPNQLGVDGHYVQISSHGLEYSSFALLLILFLVYSILYFNKFKLDK 187
L +PWL+ S N L V +SS+GL + L L+L V S + K++++K
Sbjct: 1015 LPVPWLLFS--LINGL----QPVPVSSNGLFCAIVLLFLMLLFVISSIASCKWRMNK 1065
Score = 40.0 bits (93), Expect = 5e-04
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 79 LQVPDSVMGLTFIAAGMSIPETVSSVIVAGQGQGSMALSNSWGSSTFDILLCLG 132
LQ+ + V G TF+AAG S PE +S+I ++ + GS+ F+IL +G
Sbjct: 490 LQISEDVAGATFMAAGGSAPELFTSLIGVFISHSNVGIGTIVGSAVFNILFVIG 543
>gnl|CDD|216653 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein. This is a
family of sodium/calcium exchanger integral membrane
proteins. This family covers the integral membrane
regions of the proteins. Sodium/calcium exchangers
regulate intracellular Ca2+ concentrations in many
cells; cardiac myocytes, epithelial cells, neurons
retinal rod photoreceptors and smooth muscle cells. Ca2+
is moved into or out of the cytosol depending on Na+
concentration. In humans and rats there are 3 isoforms;
NCX1 NCX2 and NCX3.
Length = 135
Score = 72.2 bits (178), Expect = 2e-16
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 54 FWIAVCSYLIAWMITILGNGEEGNTLQVPDSVMGLTFIAAGMSIPETVSSVIVAGQGQGS 113
I + + L+ + L + +V+GLT +A G S+PE SS+I A +G
Sbjct: 1 LLIILLADLLVDSAESIAE-----VLGISPTVIGLTLLALGTSLPELFSSIIAALKGNAD 55
Query: 114 MALSNSWGSSTFDILLCLGIPWLIKSTYFPNQLGVDGHYVQISSHGLEYSSFALLLILFL 173
+AL N GS+ F+ILL LG+ LI V +S L++S L+L+L L
Sbjct: 56 LALGNVIGSNLFNILLVLGLSALISPIG---------LKVLVSPLSLDFSFLLLVLLLLL 106
Query: 174 V 174
+
Sbjct: 107 L 107
>gnl|CDD|232943 TIGR00367, TIGR00367, K+-dependent Na+/Ca+ exchanger
related-protein. This model models a family of
bacterial and archaeal proteins that is homologous,
except for lacking a central region of ~ 250 amino acids
and an N-terminal region of > 100 residues, to a
functionally proven potassium-dependent sodium-calcium
exchanger of the rat [Unknown function, General].
Length = 307
Score = 73.1 bits (180), Expect = 1e-15
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 47 LTFVMCIFWIAVCSYLIAWMITILGNGEEGNTLQVPDSVMGLTFIAAGMSIPETVSSVIV 106
+ ++ + + V S L+ + L + + ++GLT +A G S+PE V S+
Sbjct: 173 VLLIIGLIGLVVGSRLLVDGAVKIAE-----ILGISEKIIGLTLLAIGTSLPELVVSLAA 227
Query: 107 AGQGQGSMALSNSWGSSTFDILLCLGIPWLI 137
A +G G +A+ N GS+ F+IL+ LG+P L
Sbjct: 228 ARKGLGDIAVGNVIGSNIFNILVGLGVPSLF 258
Score = 46.5 bits (111), Expect = 3e-06
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 76 GNTLQVPDSVMGLTFIAAGMSIPETVSSVIVAGQGQGSMALSNSWGSSTFDILLCLGIPW 135
L + ++G+T +A G S+PE +S+I + GQ + + N GS+ F+ILL LG+
Sbjct: 29 ARHLGISPLIIGVTVVAIGTSLPELFTSLIASLMGQPDIGVGNVIGSNIFNILLILGLSA 88
Query: 136 LI 137
+
Sbjct: 89 IF 90
>gnl|CDD|223604 COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and
metabolism].
Length = 320
Score = 61.1 bits (149), Expect = 3e-11
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 18/143 (12%)
Query: 47 LTFVMCIFWIAVCSYLIAWMITILGNGEEGNTLQVPDSVMGLTFIAAGMSIPETVSSVIV 106
L V+ + + V S L+ + + + ++GLT +A G S+PE V S++
Sbjct: 178 LVLVIGLILLVVGSELLVDGAVEIAE-----IFGISELIIGLTIVAIGTSLPELVVSIVA 232
Query: 107 AGQGQGSMALSNSWGSSTFDILLCLGIPWLIKSTYFPNQLGVDGHYVQISSHGLEYSSFA 166
A +G+ +A+ N GS+ F+IL+ LGI LI + + L +
Sbjct: 233 ARKGEDDIAVGNVIGSNIFNILIVLGISALIGP-------------ITVEPSALLVDAPV 279
Query: 167 LLLILFLVYSILYFNKFKLDKKV 189
L+L+ L+ L + ++ +K
Sbjct: 280 LILVTLLLLLFLARRRRRIGRKE 302
Score = 44.1 bits (105), Expect = 2e-05
Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 12/157 (7%)
Query: 53 IFWIAVCSYLIAWMITILGNGEE--GNTLQVPDSVMGLTFIAAGMSIPETVSSVIVAGQG 110
I + L+ +L + + + ++GLT +A G S+PE S++ A G
Sbjct: 12 ILLLIAGLILLVKGADLLVDAASAISRRFGISELIIGLTIVAFGTSLPELAVSLVAALSG 71
Query: 111 QGSMALSNSWGSSTFDILLCLGIPWLIKS-TYFPNQLGVDGHYVQISSHGLEYSSF---- 165
+A+ N GS+ F+ILL LG+ LI + L + ++ +++ L
Sbjct: 72 NPDIAVGNVLGSNIFNILLILGLAALIAPLKVDSDVLRREIPFLLLATLILLLVLLDGHL 131
Query: 166 -----ALLLILFLVYSILYFNKFKLDKKVRIYRVNMK 197
+LL+L+++Y + ++
Sbjct: 132 SRLDGIVLLLLYVLYLYYLLKLSREAEEPGEQENERP 168
>gnl|CDD|233149 TIGR00845, caca, sodium/calcium exchanger 1. The Ca2+:Cation
Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA
family are found ubiquitously, having been identified in
animals, plants, yeast, archaea and widely divergent
bacteria.All of the characterized animal proteins
catalyze Ca2+:Na+ exchange although some also transport
K+. The NCX1 plasma membrane protein exchanges 3 Na+ for
1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+
antiport but may also catalyze Na+:H+ antiport. All
remaining well-characterized members of the family
catalyze Ca2+:H+ exchange.This model is specific for the
eukaryotic sodium ion/calcium ion exchangers of the Caca
family [Transport and binding proteins, Other].
Length = 928
Score = 60.2 bits (146), Expect = 8e-11
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 19/155 (12%)
Query: 27 RILRWTIPPCHYETYQKYVTLTFVMCIFWIAVCSYLIAWMITILGNGEEGNTLQVPDSVM 86
++L +PP Y + + FV+ I I V + I + + G T+ + DSV
Sbjct: 741 KVLFAFVPPTEY--WGGWAC--FVVSILMIGVLTAFIGDLASHFGC-----TIGLKDSVT 791
Query: 87 GLTFIAAGMSIPETVSSVIVAGQGQGS-MALSNSWGSSTFDILLCLGIPWLIKSTYFPNQ 145
+ F+A G S+P+T +S + A Q Q + ++ N GS+ ++ L +G+ W I + Y
Sbjct: 792 AVVFVALGTSVPDTFASKVAATQDQYADASIGNVTGSNAVNVFLGIGVAWSIAAIYHAAN 851
Query: 146 LGVDGHYVQISSHGLEYS-----SFALLLILFLVY 175
G ++S L +S FA + I L+Y
Sbjct: 852 ----GTQFKVSPGTLAFSVTLFTIFAFICIGVLLY 882
Score = 31.3 bits (71), Expect = 0.42
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 67 ITILGNGEEGNTLQV---PDSVMGLTFIAAGMSIPETVSSVI-VAGQG--QGSMALSNSW 120
ITI E V ++V LT +A G S PE + SVI V G G + S
Sbjct: 110 ITIKKPNGETTVTTVRIWNETVSNLTLMALGSSAPEILLSVIEVCGHNFEAGDLGPSTIV 169
Query: 121 GSSTFDILLCLGI 133
GS+ F++ + + I
Sbjct: 170 GSAAFNMFIIIAI 182
>gnl|CDD|182684 PRK10734, PRK10734, putative calcium/sodium:proton antiporter;
Provisional.
Length = 325
Score = 48.5 bits (116), Expect = 6e-07
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 85 VMGLTFIAAGMSIPETVSSVIVAGQGQGSMALSNSWGSSTFDILLCLGIPWLI 137
+GLT IA G S+PE +++ A +G+ +A+ N GS+ F+I++ LG+P LI
Sbjct: 210 TIGLTVIAIGTSLPELATAIAGARKGENDIAVGNIIGSNIFNIVIVLGLPALI 262
Score = 45.4 bits (108), Expect = 6e-06
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 78 TLQVPDSVMGLTFIAAGMSIPETVSSVIVAGQGQGSMALSNSWGSSTFDILLCLGIPWLI 137
T +P ++G+T + G S+PE + SV + GQ +A+ + GS+ +ILL LG+ LI
Sbjct: 32 TFGIPPLIIGMTVVGIGTSLPEIIVSVAASLHGQRDLAVGTALGSNITNILLILGLAALI 91
Query: 138 K 138
+
Sbjct: 92 R 92
>gnl|CDD|215604 PLN03151, PLN03151, cation/calcium exchanger; Provisional.
Length = 650
Score = 34.4 bits (79), Expect = 0.038
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 49 FVMCIFWI-AVCSYLIAWMITILGNGEEGNTLQVPDSVMGLTFIAAGMSIPETVSSVIVA 107
F+M I W + + L+A ++ G + S++GLT +A G S+ + +S+V +A
Sbjct: 489 FIMSIVWFYMIANELVALLVAF------GVIFGINPSILGLTVLAWGNSMGDLMSNVALA 542
Query: 108 GQGQGS--MALSNSWGSSTFDILLCLGIPWLI 137
G +A+S + F+ L+ LG+ L+
Sbjct: 543 MNGGDGVQIAMSGCYAGPMFNTLVGLGMSMLL 574
>gnl|CDD|213768 TIGR03072, release_prfH, putative peptide chain release factor H.
Members of this protein family are bacterial proteins
homologous to peptide chain release factors 1 (RF-1,
product of the prfA gene), and 2 (RF-2, product of the
prfB gene). The member from Escherichia coli K-12,
designated prfH, appears to be a pseudogene. This class
I release factor is always found as the downstream gene
of a two-gene operon [Protein synthesis, Translation
factors].
Length = 200
Score = 31.7 bits (72), Expect = 0.18
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
Query: 98 PETVSSVIVAGQGQGSMALSNSWGSSTFDILLCLGIPWLIKSTYFPN 144
P T+ S +V+ G+ + AL++ W + W+ S Y P+
Sbjct: 47 PGTLRSALVSLDGEAAAALADRW---------EGTLLWICPSPYRPH 84
>gnl|CDD|221543 pfam12351, Fig1, Ca2+ regulator and membrane fusion protein Fig1.
During the mating process of yeast cells, two Ca2+
influx pathways become activated. The resulting
elevation of cytosolic free Ca2+ activates downstream
signaling factors that promote long term survival of
unmated cells. Fig1 is a regulator of the low affinity
Ca2+ influx system (LACS), and is also required for
efficient membrane fusion during yeast mating.
Length = 185
Score = 29.3 bits (66), Expect = 1.0
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 92 AAGMSIPETVSSVIVAGQGQGSMALSNSWGSSTFDILLCLGIPWLIKS 139
AA ++ G+ +MAL W + F +++CLG+ +
Sbjct: 140 AASTVAEPLSMGIVTGKVGKKAMALG--WFAFAFLLIVCLGLWAVYLR 185
>gnl|CDD|172503 PRK14002, PRK14002, potassium-transporting ATPase subunit C;
Provisional.
Length = 186
Score = 28.9 bits (65), Expect = 1.4
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 43 KYVTLTFVMCIFWIAVCSYLIAWMITIL----GNGE 74
K + LT V C+F+ +V L W L GNGE
Sbjct: 6 KSLKLTLVFCVFF-SVFYILALWGFAQLAPNKGNGE 40
>gnl|CDD|181271 PRK08179, prfH, peptide chain release factor-like protein;
Reviewed.
Length = 200
Score = 28.5 bits (64), Expect = 1.9
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 98 PETVSSVIVAGQGQGSMALSNSWGSSTFDILLCLGIPWLIKSTYFP 143
P+T+ S +V+ G + AL+ SW C I W+ S Y P
Sbjct: 48 PDTLRSALVSLDGDNAEALAESW---------CGTIQWICPSPYRP 84
>gnl|CDD|235738 PRK06199, PRK06199, ornithine cyclodeaminase; Validated.
Length = 379
Score = 28.5 bits (64), Expect = 2.5
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 85 VMGLTFIAAGMSIPETVSSVIVAGQGQGSMALSNSWGSSTF 125
VMG T +AA M++ + ++ + G+GQ S+ +W + T+
Sbjct: 165 VMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETY 205
>gnl|CDD|221279 pfam11867, DUF3387, Domain of unknown function (DUF3387). This
domain is functionally uncharacterized. This domain is
found in bacteria and archaea. This presumed domain is
typically between 255 to 340 amino acids in length. This
domain is found associated with pfam04851, pfam04313.
Length = 333
Score = 27.5 bits (62), Expect = 4.4
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 7 WSSRKTIRSKIQWLCMVPLMRILR-WTIPPCHYETYQKYV 45
W R+++R+K++ V + RILR + PP E + V
Sbjct: 286 WQKRESVRAKLR----VLVKRILRKYGYPPDKQEEAIETV 321
>gnl|CDD|235622 PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M;
Reviewed.
Length = 497
Score = 27.5 bits (62), Expect = 5.1
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 144 NQLGVDGHYVQISSHGLEYSSFALLLILFLVYS 176
NQLG+ G Q+ SHGL SS AL L++ ++Y
Sbjct: 324 NQLGIQGAIFQMISHGL--SSAALFLLVGVLYD 354
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 27.6 bits (62), Expect = 5.9
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 90 FIAAGMSIPETVSSVIVAGQGQGSMALSNSWGSSTFDILLCLGIPW 135
F+ G +P + + ++G + L+ +G P
Sbjct: 213 FLCGGAPVP---RELARRAAEALGAKVVRAYGMTEV-PLVTVGTPD 254
>gnl|CDD|143549 cd07066, CRD_FZ, CRD_domain cysteine-rich domain, also known as Fz
(frizzled) domain. CRD_FZ is an essential component of
a number of cell surface receptors, which are involved
in multiple signal transduction pathways, particularly
in modulating the activity of the Wnt proteins, which
play a fundamental role in the early development of
metazoans. CRD is also found in secreted frizzled
related proteins (SFRPs), which lack the transmembrane
segment found in the frizzled protein. The CRD domain is
also present in the alpha-1 chain of mouse type XVIII
collagen, in carboxypeptidase Z, several receptor
tyrosine kinases, and the mosaic transmembrane serine
protease corin. The CRD domain is well conserved in
metazoans - 10 frizzled proteins have been identified in
mammals, 4 in Drosophila and 3 in Caenorhabditis
elegans. CRD domains have also been identified in
multiple tandem copies in a Dictyostelium discoideum
protein. Very little is known about the mechanism by
which CRD domains interact with their ligands. The
domain contains 10 conserved cysteines.
Length = 119
Score = 26.3 bits (58), Expect = 5.9
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 129 LCLGIPWLIKSTYFPNQLGVDGHYVQISSHGLEYSSFALLLI 170
LC G+P+ +T FPN L GH Q + E SF L+
Sbjct: 9 LCRGLPY--NTTRFPNLL---GHESQEEAE-QELESFTPLVN 44
>gnl|CDD|220281 pfam09531, Ndc1_Nup, Nucleoporin protein Ndc1-Nup. Ndc1 is a
nucleoporin protein that is a component of the Nuclear
Pore Complex, and, in fungi, also of the Spindle Pole
Body. It consists of six transmembrane segments, three
lumenal loops, both concentrated at the N-terminus and
cytoplasmic domains largely at the C-terminus, all of
which are well conserved.
Length = 557
Score = 27.3 bits (61), Expect = 6.9
Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 19 WLCMVPL--MRILRWTIPPCHYET-----YQKYVTLTFVMCIFWIAVCSYLIAWMITIL 70
+L ++ + +R + + Y + +L F++ + V ++L AW+
Sbjct: 55 FLALLLIGILRKNQLHVGYRPYSSRIAQILGSLFSLRFLLTLLTYVVSAWLFAWVYIWS 113
>gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain
in Subtilisin-like proteins. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 259
Score = 26.8 bits (60), Expect = 7.2
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 84 SVMGLTFIAAGMSIPETVSSVIVA---GQGQGSMALSNSWGSSTFDILLC 130
+M L F+ A S T S I A G+ ++NSWG L
Sbjct: 91 KIMPLKFLGADGSG--TTSDAIKAIDYAVDMGAKIINNSWGGGGPSQALR 138
>gnl|CDD|202199 pfam02305, Phage_F, Capsid protein (F protein). This is a family
of proteins from single-stranded DNA bacteriophages.
Protein F is the major capsid component, sixty copies of
which are found in the virion.
Length = 450
Score = 26.7 bits (59), Expect = 9.7
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 79 LQVPDSVMGLTFIAAGMSIPETVSSVIVAGQG 110
LQ P+ +MG +F A+G +P+T S+ + QG
Sbjct: 244 LQRPELLMGSSFWASGYDVPQTSSTDSKSPQG 275
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.139 0.443
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,457,533
Number of extensions: 967357
Number of successful extensions: 1649
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1638
Number of HSP's successfully gapped: 77
Length of query: 206
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 114
Effective length of database: 6,857,034
Effective search space: 781701876
Effective search space used: 781701876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.7 bits)