RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11338
         (206 letters)



>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation
           protein complex, sodium,calcium EX membrane protein;
           HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii}
           PDB: 3v5s_A*
          Length = 320

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 77  NTLQVPDSVMGLTFIAAGMSIPETVSSVIVAGQGQGSMALSNSWGSSTFDILLCLGIPWL 136
             L + D V+G T +A G S+PE + S+  A +  G M L N  GS+  DI   L +  L
Sbjct: 191 LALDISDKVIGFTLVAFGTSLPELMVSLAAAKRNLGGMVLGNVIGSNIADIGGALAVGSL 250

Query: 137 I 137
            
Sbjct: 251 F 251



 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 8/118 (6%)

Query: 79  LQVPDSVMGLTFIAAGMSIPETVSSVIVAGQGQGSMALSNSWGSSTFDILLCLGIPWLIK 138
             V + V+G T +A G S+PE ++S   +      +++ N+ GS   +I L LG+  +I 
Sbjct: 34  FNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIGLVLGLSAIIS 93

Query: 139 STYFPNQ--------LGVDGHYVQISSHGLEYSSFALLLILFLVYSILYFNKFKLDKK 188
                          L        I   G  +    +LLILF++Y          + +
Sbjct: 94  PIIVDKNLQKNILVYLLFVIFAAVIGIDGFSWIDGVVLLILFIIYLRWTVKNGSAEIE 151


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 52.0 bits (124), Expect = 4e-08
 Identities = 35/192 (18%), Positives = 65/192 (33%), Gaps = 54/192 (28%)

Query: 26  MRILRW-----TIPPCHYETYQKYVTLTFVMCIFWIAVCSYLIAWMITILGNGEEGNTLQ 80
           + IL W       P    + Y   + ++  + I  I +  Y++     +LG        +
Sbjct: 213 LNILEWLENPSNTPD---KDYLLSIPISCPL-IGVIQLAHYVVT--AKLLGF----TPGE 262

Query: 81  VPDSVMGLTFIAAGMSIPETVSSVIVAGQGQGSMALSNSWGSSTFDILLCLGIPWLIKST 140
           +   + G T  + G+     V++V +A         ++SW S  F + +   I  L    
Sbjct: 263 LRSYLKGATGHSQGL-----VTAVAIA--------ETDSWES--FFVSVRKAITVL---- 303

Query: 141 YFPNQLGVDGH-----------YVQIS-SHGLEYSSFAL----LLILFLVYSILYFNK-F 183
            F   +GV  +            ++ S  +     S  L    L    +   +   N   
Sbjct: 304 -F--FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360

Query: 184 KLDKKVRIYRVN 195
              K+V I  VN
Sbjct: 361 PAGKQVEISLVN 372



 Score = 27.3 bits (60), Expect = 4.4
 Identities = 15/87 (17%), Positives = 24/87 (27%), Gaps = 27/87 (31%)

Query: 26  MRILRWTIPPCHYETYQKYVTLTFVMCIFWIAVCSYLIAWMITILGNGEEGNTLQVPDSV 85
           +R+L  +I           V     + + W     +    ++   G          P   
Sbjct: 468 LRVLSGSISERI-------VDCIIRLPVKWETTTQFKATHILD-FG----------PGGA 509

Query: 86  MGLTF----IAAGMSIPETVSSVIVAG 108
            GL         G  +      VIVAG
Sbjct: 510 SGLGVLTHRNKDGTGV-----RVIVAG 531


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.4 bits (65), Expect = 0.87
 Identities = 5/46 (10%), Positives = 16/46 (34%), Gaps = 6/46 (13%)

Query: 1   MYISSGWSSRKTIRSKIQWLCMVPLMRILRWTIPPCHYETYQKYVT 46
           +++   +  +K       W     ++  L+        + Y+ Y+ 
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQ------QLKFYKPYIC 535


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.139    0.443 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,151,643
Number of extensions: 175283
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 11
Length of query: 206
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 117
Effective length of database: 4,216,824
Effective search space: 493368408
Effective search space used: 493368408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.1 bits)