RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11338
         (206 letters)



>d2d0oa1 c.8.6.1 (A:93-254) Diol dehydratase-reactivating factor
           large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
          Length = 162

 Score = 25.8 bits (57), Expect = 2.9
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 81  VPDSVMGLTFIAAGMSIPETVSSVIVAGQGQGSMALSNSWGSSTF 125
           + D V+ +  I  GM     ++++ VA  G+    LSN +G +T 
Sbjct: 89  IVDEVLYIDRIPLGM-----LAAIEVAVPGKVIETLSNPYGIATV 128


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.139    0.443 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 784,905
Number of extensions: 34375
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 5
Length of query: 206
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,295,466
Effective search space: 161933250
Effective search space used: 161933250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.9 bits)