BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1134
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
Length = 285
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/58 (77%), Positives = 52/58 (89%)
Query: 25 NKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
N GQHILKNPLII SI+DK A+RPTD VLE+GPGTGNMTVK+LE+AKKV+ACE+DP
Sbjct: 3 NTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDP 60
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 102 VPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHFA 149
+P DF I I +L F+DKRAR+MD+DDF+ LL FN GIHF+
Sbjct: 238 IPEDFSIADKIQQILTSTGFSDKRARSMDIDDFIRLLHGFNAEGIHFS 285
>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase
From Plasmodium Falciparum
pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase
From Plasmodium Falciparum
Length = 299
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 39/53 (73%)
Query: 29 GQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEID 81
GQH+LKNP I+ I+ I+ +D VLEIG GTGN+TVK+L AKKVI +ID
Sbjct: 21 GQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDID 73
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 94 FRNLCL--QEVPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHF 148
++N C ++VP +F K VL ++ +KR+ +D +DF+ LL FNK GIHF
Sbjct: 240 YKNWCTLNKQVPVNFPFKKYCLDVLEHLDMCEKRSINLDENDFLKLLLEFNKKGIHF 296
>pdb|3TQS|A Chain A, Structure Of The Dimethyladenosine Transferase (Ksga)
From Coxiella Burnetii
pdb|3TQS|B Chain B, Structure Of The Dimethyladenosine Transferase (Ksga)
From Coxiella Burnetii
pdb|3TQS|C Chain C, Structure Of The Dimethyladenosine Transferase (Ksga)
From Coxiella Burnetii
pdb|3TQS|D Chain D, Structure Of The Dimethyladenosine Transferase (Ksga)
From Coxiella Burnetii
Length = 255
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 26 KDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCK 85
K FGQH L + ++Q IV + TDT++EIGPG G +T +L + + EID
Sbjct: 5 KRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLV 64
Query: 86 SYFPSLY 92
++ Y
Sbjct: 65 AFLQKKY 71
>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 248
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 22 IQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA-KKVIACEI 80
++ K FGQH+L + +++ I ++ I +TV+E+G GTGN+T +L+ KK+ E+
Sbjct: 2 VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL 61
Query: 81 D 81
D
Sbjct: 62 D 62
>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom
Resolution
pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom
Resolution
pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With
Rna
pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With
Rna And Sah
Length = 249
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 22 IQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA-KKVIACEI 80
++ K FGQH+L + +++ I ++ I +TV+E+G GTGN+T +L+ KK+ E+
Sbjct: 3 VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL 62
Query: 81 D 81
D
Sbjct: 63 D 63
>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
That Confers Macrolide-Lincosamide-Streptogramin
Antibiotic Resistance, Nmr, Minimized Average Structure
Length = 245
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 25 NKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
N + Q+ L + ++ I+ + ++ TDTV EIG G G++T K+ + +K+V + E+D
Sbjct: 4 NIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDS 61
>pdb|3FUU|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Complex With Adenosine In
Space Group P212121
pdb|3FUV|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
pdb|3FUV|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
pdb|3FUV|C Chain C, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
pdb|3FUW|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Complex With
5'-Methylthioadenosine In Space Group P212121
pdb|3FUX|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Complex With
5'-Methylthioadenosine In Space Group P212121
pdb|3FUX|B Chain B, T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Complex With
5'-Methylthioadenosine In Space Group P212121
pdb|3FUX|C Chain C, T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Complex With
5'-Methylthioadenosine In Space Group P212121
Length = 271
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 25 NKDFGQHILKNPLIIQSIVDKGAIRP-TDTVLEIGPGTGNMTVKILEQAKKVIACEID 81
+K FGQ+ L + ++ IV+ A RP T V E+GPG G +T +LE +V A E D
Sbjct: 22 DKRFGQNFLVSEAHLRRIVE--AARPFTGPVFEVGPGLGALTRALLEAGAEVTAIEKD 77
>pdb|3FUT|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P21212
pdb|3FUT|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P21212
Length = 271
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 25 NKDFGQHILKNPLIIQSIVDKGAIRP-TDTVLEIGPGTGNMTVKILEQAKKVIACEID 81
+K FGQ+ L + ++ IV+ A RP T V E+GPG G +T +LE +V A E D
Sbjct: 22 DKRFGQNFLVSEAHLRRIVE--AARPFTGPVFEVGPGLGALTRALLEAGAEVTAIEKD 77
>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Homocysteine And Methanocaldococcus Jannaschi Dim1.
pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And
Methanocaldococcus Jannaschi Dim1
pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And
Methanocaldococcus Jannaschi Dim1
pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Methionine And Methanocaldococcus Jannaschi Dim1
Length = 295
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%)
Query: 26 KDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCK 85
K GQ L + + V+ + D VLEIG G G +T ++ + AKKV EID S +
Sbjct: 26 KKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLE 85
Query: 86 SY 87
Y
Sbjct: 86 PY 87
>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 263
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSL 91
+ V+ + D VLEIG G G +T ++ + AKKV EID S + Y L
Sbjct: 10 VNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKL 62
>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 265
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSL 91
+ V+ + D VLEIG G G +T ++ + AKKV EID S + Y L
Sbjct: 12 VNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKL 64
>pdb|3TPZ|A Chain A, 2.1 Angstrom Crystal Structure Of The L114p Mutant Of E.
Coli Ksga
pdb|3TPZ|B Chain B, 2.1 Angstrom Crystal Structure Of The L114p Mutant Of E.
Coli Ksga
Length = 273
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 26 KDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEID 81
K FGQ+ L + +I SIV + ++EIGPG +T + E+ ++ E+D
Sbjct: 13 KRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELD 68
>pdb|3UZU|A Chain A, The Structure Of The Ribosomal Rna Small Subunit
Methyltransferase A From Burkholderia Pseudomallei
Length = 279
Score = 32.7 bits (73), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 25 NKDFGQHILKNPLIIQSIVDKGAIRPT--DTVLEIGPGTGNMTVKILEQ----AKKVIAC 78
K FGQ+ L + +I +IV AIRP + ++EIGPG G +T ++ + + A
Sbjct: 17 RKRFGQNFLVDHGVIDAIV--AAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAV 74
Query: 79 EID 81
E+D
Sbjct: 75 ELD 77
>pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
pdb|2ERC|B Chain B, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
pdb|1QAM|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAN|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAO|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAQ|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
Length = 244
Score = 32.7 bits (73), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 29 GQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS-CKS 86
Q+ + + I I+ + D + EIG G G+ T++++++ V A EID CK+
Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKT 67
>pdb|3HNR|A Chain A, Crystal Structure Of A Probable Methyltransferase
Bt9727_4108 From Bacillus Thuringiensis Subsp. Northeast
Structural Genomics Consortium Target Id Bur219
Length = 220
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 24/94 (25%)
Query: 38 IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNL 97
I++ +V+K VLE G GTGN+T K+L + V I+PS + R +
Sbjct: 37 ILEDVVNK----SFGNVLEFGVGTGNLTNKLLLAGRTVYG--IEPSRE--------MRMI 82
Query: 98 CLQEVPTDFDIK----------TLIDTVLNEINF 121
+++P +F I T IDT+++ F
Sbjct: 83 AKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYAF 116
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 20 ICIQFNKDFG-QHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIAC 78
+ I+ FG H L ++++ +RP D VL++G G+G + + + K +
Sbjct: 91 LVIEPGMAFGTGHAETTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGGKALGV 148
Query: 79 EIDP 82
+IDP
Sbjct: 149 DIDP 152
>pdb|1KR0|A Chain A, Hevamine Mutant D125aY183F IN COMPLEX WITH TETRA-Nag
Length = 273
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 18/108 (16%)
Query: 38 IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNL 97
I+ + + I+ +L +G G G+ T+ AK V + Y + N
Sbjct: 59 IVSNGIRSCQIQGIKVMLSLGGGIGSYTLASQADAKNV--------------ADYLWNNF 104
Query: 98 CLQEVPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHG 145
+ + + L D VL+ I+FA + T+ DD L+ ++K G
Sbjct: 105 LGGKSSS----RPLGDAVLDGIDFAIEHGSTLYWDDLARYLSAYSKQG 148
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
+RP D VL++G G+G + + + K + +IDP
Sbjct: 118 LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDP 152
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTV---KILEQAKKVIACEI-----DPSCKSY 87
P I I+ I P DTVLE G G+G M++ K + +VI+ E+ D + K+Y
Sbjct: 91 PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNY 150
Query: 88 FPSLYYFRNLCLQEVPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVL 136
++ ++E P + +D + +I+ A + +++ D L
Sbjct: 151 KHWRDSWKLSHVEEWPDN------VDFIHKDISGATEDIKSLTFDAVAL 193
>pdb|1KR1|A Chain A, Hevamine Mutant D125aE127A IN COMPLEX WITH TETRA-Nag
Length = 273
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 18/108 (16%)
Query: 38 IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNL 97
I+ + + I+ +L +G G G+ T+ AK V + Y + N
Sbjct: 59 IVSNGIRSCQIQGIKVMLSLGGGIGSYTLASQADAKNV--------------ADYLWNNF 104
Query: 98 CLQEVPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHG 145
+ + + L D VL+ I+FA T+ DD L+ ++K G
Sbjct: 105 LGGKSSS----RPLGDAVLDGIDFAIAHGSTLYWDDLARYLSAYSKQG 148
>pdb|1KQY|A Chain A, Hevamine Mutant D125aE127AY183F IN COMPLEX WITH PENTA-Nag
pdb|1KQZ|A Chain A, Hevamine Mutant D125aE127AY183F IN COMPLEX WITH TETRA-Nag
Length = 273
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 18/108 (16%)
Query: 38 IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNL 97
I+ + + I+ +L +G G G+ T+ AK V + Y + N
Sbjct: 59 IVSNGIRSCQIQGIKVMLSLGGGIGSYTLASQADAKNV--------------ADYLWNNF 104
Query: 98 CLQEVPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHG 145
+ + + L D VL+ I+FA T+ DD L+ ++K G
Sbjct: 105 LGGKSSS----RPLGDAVLDGIDFAIAHGSTLYWDDLARYLSAYSKQG 148
>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
Length = 231
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 54 VLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLY-YFRNLCL 99
VLEIG G G T I E KV++ EI+ +Y L Y+ N+ L
Sbjct: 74 VLEIGTGIGYYTALIAEIVDKVVSVEINEKXYNYASKLLSYYNNIKL 120
>pdb|1YB2|A Chain A, Structure Of A Putative Methyltransferase From
Thermoplasma Acidophilum
Length = 275
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 28 FGQHILKNPLIIQSI-----VDKGAIRPTDTVLEIGPGTGNMTVKIL 69
FG+ I +N II I + + +RP +LE+G G+GN + IL
Sbjct: 83 FGRVIRRNTQIISEIDASYIIMRCGLRPGXDILEVGVGSGNXSSYIL 129
>pdb|1WG8|A Chain A, Crystal Structure Of A Predicted S-Adenosylmethionine-
Dependent Methyltransferase Tt1512 From Thermus
Thermophilus Hb8.
pdb|1WG8|B Chain B, Crystal Structure Of A Predicted S-Adenosylmethionine-
Dependent Methyltransferase Tt1512 From Thermus
Thermophilus Hb8
Length = 285
Score = 29.3 bits (64), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLY 92
P++ Q +D A+RP ++ G ILE+ +VI + DP + L+
Sbjct: 8 PVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLH 64
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 29.3 bits (64), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 27 DFGQHILKNPLII-----QSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIAC 78
D+ + + P +I IV +G I P VLE G G+G +T+ +L A +VI+
Sbjct: 71 DYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISY 130
Query: 79 E 79
E
Sbjct: 131 E 131
>pdb|1QYR|A Chain A, 2.1 Angstrom Crystal Structure Of Ksga: A Universally
Conserved Adenosine Dimethyltransferase
pdb|1QYR|B Chain B, 2.1 Angstrom Crystal Structure Of Ksga: A Universally
Conserved Adenosine Dimethyltransferase
pdb|4ADV|V Chain V, Structure Of The E. Coli Methyltransferase Ksga Bound To
The E. Coli 30s Ribosomal Subunit
Length = 252
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 30 QHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEID 81
Q+ L + +I SIV + ++EIGPG +T + E+ ++ E+D
Sbjct: 1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELD 52
>pdb|1UWV|A Chain A, Crystal Structure Of Ruma, The Iron-Sulfur Cluster
Containing E. Coli 23s Ribosomal Rna 5-Methyluridine
Methyltransferase
Length = 433
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
++P D VL++ G GN T+ + QA V+ E P+
Sbjct: 284 VQPEDRVLDLFCGXGNFTLPLATQAASVVGVEGVPA 319
>pdb|2BH2|A Chain A, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine.
pdb|2BH2|B Chain B, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine
Length = 433
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
++P D VL++ G GN T+ + QA V+ E P+
Sbjct: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319
>pdb|3HV0|A Chain A, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
pdb|3HV0|B Chain B, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
Length = 393
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 30 QHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFP 89
Q K PL+IQ D+ I ++ LE T N E K +IAC DP F
Sbjct: 103 QDTFKVPLVIQLTDDEKFIFKSNLTLE---ETHNYAY---ENMKDIIACGFDPELTFIFT 156
Query: 90 SLYYFRNL 97
+L Y L
Sbjct: 157 NLEYIAEL 164
>pdb|1G60|A Chain A, Crystal Structure Of Methyltransferase Mboiia (Moraxella
Bovis)
pdb|1G60|B Chain B, Crystal Structure Of Methyltransferase Mboiia (Moraxella
Bovis)
Length = 260
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 10 NYYVCRTVWKICIQFNKD--FGQ-----HILKNPLIIQSIVDKGAIRPTDTVLEIGPGTG 62
N +C VW Q +K+ G+ HI P + + + + P D VL+ G+G
Sbjct: 165 NGRLCGEVWHFSSQRHKEKVNGKTVKLTHITPKPRDLIERIIRASSNPNDLVLDCFMGSG 224
Query: 63 NMTVKILEQAKKVIACEID 81
+ + + I C+++
Sbjct: 225 TTAIVAKKLGRNFIGCDMN 243
>pdb|4HTF|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 54 VLEIGPGTGNMTVKILEQAKKVIACEI 80
VL+ G G G +K E+ +VI C++
Sbjct: 72 VLDAGGGEGQTAIKXAERGHQVILCDL 98
>pdb|4HTF|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 54 VLEIGPGTGNMTVKILEQAKKVIACEI 80
VL+ G G G +K E+ +VI C++
Sbjct: 72 VLDAGGGEGQTAIKXAERGHQVILCDL 98
>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|B Chain B, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|C Chain C, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|D Chain D, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
Length = 210
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 29 GQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYF 88
GQ I P ++ + + + P VLEIG G+G T + + V C ++ +
Sbjct: 57 GQTI-SQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHV--CSVERIKGLQW 113
Query: 89 PSLYYFRNLCLQEVPT 104
+ +NL L V T
Sbjct: 114 QARRRLKNLDLHNVST 129
>pdb|1TJE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase
pdb|1TKE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Serine
pdb|1TKG|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|1TKY|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Seryl-3'-aminoadenosine
Length = 224
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 47 AIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEI 80
A+ P D L+IGPG + + V AC++
Sbjct: 17 AVSPMDVALDIGPGLAKACIAGRVNGELVDACDL 50
>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
With Its Cognate Trna
Length = 642
Score = 26.2 bits (56), Expect = 8.0, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 47 AIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEI 80
A+ P D L+IGPG + + V AC++
Sbjct: 17 AVSPMDVALDIGPGLAKACIAGRVNGELVDACDL 50
>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
pdb|2EIH|B Chain B, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
Length = 343
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 40 QSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK 73
Q +VDK +RP D VL + G+G ++V ++ AK
Sbjct: 156 QMVVDKLGVRPGDDVLVMAAGSG-VSVAAIQIAK 188
>pdb|3DOU|A Chain A, Crystal Structure Of Methyltransferase Involved In Cell
Division From Thermoplasma Volcanicum Gss1
Length = 191
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQAKKVIACEI 80
+R D V+EIG G T + A+K+I+ ++
Sbjct: 23 VRKGDAVIEIGSSPGGWTQVLNSLARKIISIDL 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.142 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,826,601
Number of Sequences: 62578
Number of extensions: 190776
Number of successful extensions: 767
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 730
Number of HSP's gapped (non-prelim): 41
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)