BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1134
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2KHT8|DIM1_BOVIN Probable dimethyladenosine transferase OS=Bos taurus GN=DIMT1
PE=2 SV=1
Length = 313
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 54/61 (88%)
Query: 22 IQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEID 81
+ FN GQHILKNPLI+ SI+DK A+RPTD VLE+GPGTGNMTVK+LE+AKKVIACE+D
Sbjct: 28 LMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVIACELD 87
Query: 82 P 82
P
Sbjct: 88 P 88
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 102 VPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHFA 149
+P DF I I +L F+DKRAR+MD+DDF+ LL FN GIHF+
Sbjct: 266 IPEDFSIADKIQQILTSTGFSDKRARSMDIDDFIRLLHGFNAEGIHFS 313
>sp|Q9UNQ2|DIM1_HUMAN Probable dimethyladenosine transferase OS=Homo sapiens GN=DIMT1
PE=1 SV=1
Length = 313
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 54/61 (88%)
Query: 22 IQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEID 81
+ FN GQHILKNPLII SI+DK A+RPTD VLE+GPGTGNMTVK+LE+AKKV+ACE+D
Sbjct: 28 LMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD 87
Query: 82 P 82
P
Sbjct: 88 P 88
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 102 VPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHFA 149
+P DF I I +L F+DKRAR+MD+DDF+ LL FN GIHF+
Sbjct: 266 IPEDFSIADKIQQILTSTGFSDKRARSMDIDDFIRLLHGFNAEGIHFS 313
>sp|Q95KJ0|DIM1_MACFA Probable dimethyladenosine transferase OS=Macaca fascicularis
GN=DIMT1 PE=2 SV=1
Length = 313
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 54/61 (88%)
Query: 22 IQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEID 81
+ FN GQHILKNPLII SI+DK A+RPTD VLE+GPGTGNMTVK+LE+AKKV+ACE+D
Sbjct: 28 LMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD 87
Query: 82 P 82
P
Sbjct: 88 P 88
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 102 VPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHFA 149
+P DF I I +L F+DKRAR+MD+DDF+ LL FN GIHF+
Sbjct: 266 IPEDFSIADKIQQILTSTGFSDKRARSMDIDDFIRLLHGFNAEGIHFS 313
>sp|Q9VAQ5|DIM1_DROME Probable dimethyladenosine transferase OS=Drosophila melanogaster
GN=CG11837 PE=2 SV=1
Length = 306
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 57/65 (87%)
Query: 17 VWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVI 76
V K I FNKDFGQHILKNPL+I ++++K A+R TD VLEIGPGTGNMTV++LE+AKKVI
Sbjct: 16 VQKQGIVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRMLERAKKVI 75
Query: 77 ACEID 81
ACEID
Sbjct: 76 ACEID 80
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 94 FRNLCLQEVPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHF 148
+R+L + + DF ++ + ++L E + A KRAR+MD+DDF+ LL FN GIHF
Sbjct: 251 YRSLRNEPIEDDFKMQDKVISILEEQDMAAKRARSMDIDDFMRLLLAFNSAGIHF 305
>sp|Q9D0D4|DIM1_MOUSE Probable dimethyladenosine transferase OS=Mus musculus GN=Dimt1
PE=2 SV=1
Length = 313
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 54/61 (88%)
Query: 22 IQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEID 81
+ FN GQHILKNPLI+ SI+DK A+RPTD VLE+GPGTGNMTVK+LE+AKKV+ACE+D
Sbjct: 28 LMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD 87
Query: 82 P 82
P
Sbjct: 88 P 88
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 102 VPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHFA 149
+P DF I I +L F+DKRAR+MD+DDF+ LL FN GIHF+
Sbjct: 266 IPEDFSIADKIQQILTSTGFSDKRARSMDIDDFIRLLHGFNAEGIHFS 313
>sp|P41819|DIM1_YEAST Dimethyladenosine transferase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DIM1 PE=1 SV=1
Length = 318
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 51/60 (85%)
Query: 23 QFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
+FN D GQHILKNPL+ Q IVDK IRP+D VLE+GPGTGN+TV+ILEQAK V+A E+DP
Sbjct: 29 KFNTDLGQHILKNPLVAQGIVDKAQIRPSDVVLEVGPGTGNLTVRILEQAKNVVAVEMDP 88
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 108 IKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHFA 149
+K IDTVL E + DKRA D +DF+ LL F++ GIHF+
Sbjct: 277 VKEKIDTVLKETDLGDKRAGKCDQNDFLRLLYAFHQVGIHFS 318
>sp|Q6FKY3|DIM1_CANGA Dimethyladenosine transferase OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DIM1 PE=3 SV=1
Length = 317
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 52/60 (86%)
Query: 23 QFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
+FN D GQHILKNPL+ Q IVDK I+P+D VLE+GPGTGN+TV+ILEQA+KV+A E+DP
Sbjct: 29 KFNTDLGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILEQARKVVAVEMDP 88
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 108 IKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHFA 149
IK I+TVL E A+KRA D DF+ LL F++ GIHF+
Sbjct: 276 IKQKIETVLKETGLAEKRAGKCDQTDFLKLLYAFHQVGIHFS 317
>sp|Q6BSY5|DIM1_DEBHA Dimethyladenosine transferase OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DIM1 PE=3 SV=1
Length = 327
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 52/60 (86%)
Query: 23 QFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
+FN + GQHILKNPL+ Q IVDK I+P+D VLE+GPGTGN+TV+ILEQA+KVIA E+DP
Sbjct: 31 KFNTNLGQHILKNPLVAQGIVDKAGIKPSDIVLEVGPGTGNLTVRILEQARKVIASEMDP 90
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 108 IKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHFA 149
+K I+ VL E F+DKRA +D DF+ LL F++ G+HFA
Sbjct: 286 VKAKIEQVLTETGFSDKRAAKLDQTDFLKLLYAFHQVGLHFA 327
>sp|P78697|DIM1_KLULA Dimethyladenosine transferase OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DIM1 PE=3 SV=3
Length = 320
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 51/60 (85%)
Query: 23 QFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
+FN D GQHILKNPL+ Q IVDK I+P+D VLEIGPGTGN+TV+ILEQA+KV+A E DP
Sbjct: 30 KFNTDLGQHILKNPLVAQGIVDKAQIKPSDIVLEIGPGTGNLTVRILEQARKVVAVEFDP 89
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 107 DIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHFA 149
++K I+ VL+E A+KRA D DF+ LL F++ GIHFA
Sbjct: 278 EVKEKIEQVLSETGLAEKRAGKCDQTDFLKLLYGFHQVGIHFA 320
>sp|Q75C90|DIM1_ASHGO Dimethyladenosine transferase OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DIM1
PE=3 SV=1
Length = 319
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 51/60 (85%)
Query: 23 QFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
+FN D GQHILKNPL+ Q IVDK I+P+D VLE+GPGTGN+TV+ILEQA+KV+A E DP
Sbjct: 29 KFNTDLGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILEQARKVVAVEFDP 88
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 108 IKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHFA 149
+K I+TVL E +DKRA D DF+ LL F++ G+HF+
Sbjct: 278 VKQKIETVLAETGLSDKRAGKCDQTDFLKLLYAFHQVGLHFS 319
>sp|Q9USU2|DIM1_SCHPO Dimethyladenosine transferase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dim1 PE=3 SV=1
Length = 307
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 54/60 (90%)
Query: 23 QFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
+FNKDFGQHILKNPL+ Q IVDK ++ +DTVLE+GPGTGN+TV++LE+A+KVIA E+DP
Sbjct: 23 KFNKDFGQHILKNPLVAQGIVDKADLKQSDTVLEVGPGTGNLTVRMLEKARKVIAVEMDP 82
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 29 GQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYF 88
G++ + P +++S V + + L G + + L + K + AC S
Sbjct: 186 GKNNFRPPPLVESSVVRIEPKNPPPPLAFEEWDGLLRIVFLRKNKTIGACFKTSSIIEMV 245
Query: 89 PSLYYFRNLCLQE---VPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHG 145
+ Y R C Q V DFD+K+LID VL + N D RA +F+ LL F++ G
Sbjct: 246 ENNY--RTWCSQNERMVEEDFDVKSLIDGVLQQCNLQDARASKCGQTEFLSLLHAFHQVG 303
Query: 146 IHFA 149
+HFA
Sbjct: 304 VHFA 307
>sp|Q6C7H6|DIM1_YARLI Dimethyladenosine transferase OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=DIM1 PE=3 SV=1
Length = 317
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 52/60 (86%)
Query: 23 QFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
+ N D GQHILKNPL+ Q IVDK I+P+DTVLE+GPGTGN+TV+ILE+A+KVIA E+DP
Sbjct: 29 KMNTDLGQHILKNPLVAQGIVDKSDIKPSDTVLEVGPGTGNLTVRILEKARKVIAVEMDP 88
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 108 IKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHFA 149
+K I+ +L + + R+ D +F+ LL F+K GI+FA
Sbjct: 276 VKQKINKILTDTGIGEMRSAKCDQTEFLTLLNEFHKAGIYFA 317
>sp|Q54QK7|DIM1_DICDI Probable dimethyladenosine transferase OS=Dictyostelium
discoideum GN=dimt1 PE=3 SV=1
Length = 314
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 51/60 (85%)
Query: 23 QFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
Q NK +GQH+LKNPLII +IVDK ++ TDTVLEIGPGTGN+T+K+LE KKVIA E+DP
Sbjct: 28 QMNKSYGQHLLKNPLIIDAIVDKSQLKSTDTVLEIGPGTGNLTMKLLENCKKVIAIEVDP 87
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 104 TDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHF 148
+D +K LI L + +F D R+ +D++DF+ LL F++ GIHF
Sbjct: 269 SDEQMKELIIKTLTDNDFLDSRSSKLDINDFLKLLNKFHETGIHF 313
>sp|Q09522|DIM1_CAEEL Probable dimethyladenosine transferase OS=Caenorhabditis elegans
GN=E02H1.1 PE=3 SV=2
Length = 308
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 52/62 (83%)
Query: 21 CIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEI 80
+ FN D GQHILKNP ++ +IV+K A++ TDTVLE+GPGTGN+TVK+LE AK VIACEI
Sbjct: 21 SLPFNTDKGQHILKNPGVVNAIVEKSALKATDTVLEVGPGTGNLTVKMLEVAKTVIACEI 80
Query: 81 DP 82
DP
Sbjct: 81 DP 82
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 94 FRNLCL---QEVPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHF 148
FR +C + +P D ++K +I+ L + + RAR M ++DF+ LL FNK IHF
Sbjct: 249 FRKVCSFKNKPIPKDLNMKKVIEETLTASGYGESRARKMRVEDFLALLLAFNKADIHF 306
>sp|Q8FQZ5|RSMA_COREF Ribosomal RNA small subunit methyltransferase A OS=Corynebacterium
efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM
11189 / NBRC 100395) GN=rsmA PE=3 SV=1
Length = 289
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%)
Query: 19 KICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIAC 78
K+ + K GQ+ + +P ++ IV + P D V+E+GPG G++T+ ++E+A V A
Sbjct: 21 KLDVTPTKKLGQNFVHDPNTVRRIVTAADLTPEDHVVEVGPGLGSLTLALVEKAASVTAV 80
Query: 79 EIDPSCKSYFPSLYYFRNLCLQE 101
EIDP + P+ + +R L +
Sbjct: 81 EIDPRLAAELPATFAWRAPGLAD 103
>sp|A4QCP0|RSMA_CORGB Ribosomal RNA small subunit methyltransferase A OS=Corynebacterium
glutamicum (strain R) GN=rsmA PE=3 SV=1
Length = 293
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 19 KICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIAC 78
K+ + K GQ+ + +P ++ IV + P D V+E+GPG G++T+ ++E A V A
Sbjct: 21 KLDVTPTKKLGQNFVHDPNTVRRIVAAAELTPDDHVVEVGPGLGSLTLALVESAASVTAV 80
Query: 79 EIDPSCKSYFPSLYYFRNLCL 99
EIDP + P + +R L
Sbjct: 81 EIDPRLAAELPETFQWRAPAL 101
>sp|Q8NRY1|RSMA_CORGL Ribosomal RNA small subunit methyltransferase A OS=Corynebacterium
glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /
LMG 3730 / NCIMB 10025) GN=rsmA PE=3 SV=1
Length = 293
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 19 KICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIAC 78
K+ + K GQ+ + +P ++ IV + P D V+E+GPG G++T+ ++E A V A
Sbjct: 21 KLDVTPTKKLGQNFVHDPNTVRRIVAAAELTPDDHVVEVGPGLGSLTLALVESAASVTAV 80
Query: 79 EIDPSCKSYFPSLYYFRNLCL 99
EIDP + P + +R L
Sbjct: 81 EIDPRLAAELPETFQWRAPAL 101
>sp|C1FQ40|RSMA_CLOBJ Ribosomal RNA small subunit methyltransferase A OS=Clostridium
botulinum (strain Kyoto / Type A2) GN=rsmA PE=3 SV=1
Length = 275
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%)
Query: 17 VWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVI 76
V K +FNK+ GQ+ L + +++ I++ I DTV+EIGPG G +T ++LE+AK+V
Sbjct: 7 VNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLERAKEVY 66
Query: 77 ACEID 81
+ E+D
Sbjct: 67 SIELD 71
>sp|C3KXY4|RSMA_CLOB6 Ribosomal RNA small subunit methyltransferase A OS=Clostridium
botulinum (strain 657 / Type Ba4) GN=rsmA PE=3 SV=1
Length = 275
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%)
Query: 17 VWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVI 76
V K +FNK+ GQ+ L + +++ I++ I DTV+EIGPG G +T ++LE+AK+V
Sbjct: 7 VNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLERAKEVY 66
Query: 77 ACEID 81
+ E+D
Sbjct: 67 SIELD 71
>sp|A7FQA9|RSMA_CLOB1 Ribosomal RNA small subunit methyltransferase A OS=Clostridium
botulinum (strain ATCC 19397 / Type A) GN=rsmA PE=3
SV=1
Length = 275
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%)
Query: 17 VWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVI 76
V K +FNK+ GQ+ L + +++ I++ I DTV+EIGPG G +T ++LE+AK+V
Sbjct: 7 VNKYEFKFNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLERAKEVY 66
Query: 77 ACEID 81
+ E+D
Sbjct: 67 SIELD 71
>sp|A7G9I5|RSMA_CLOBL Ribosomal RNA small subunit methyltransferase A OS=Clostridium
botulinum (strain Langeland / NCTC 10281 / Type F)
GN=rsmA PE=3 SV=1
Length = 275
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%)
Query: 17 VWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVI 76
V K +FNK+ GQ+ L + +++ I++ I DTV+EIGPG G +T ++LE+AK+V
Sbjct: 7 VNKYEFKFNKNLGQNFLIDESVLEDIIEGAEISKEDTVIEIGPGVGTLTKELLERAKEVY 66
Query: 77 ACEID 81
+ E+D
Sbjct: 67 SIELD 71
>sp|B1ID54|RSMA_CLOBK Ribosomal RNA small subunit methyltransferase A OS=Clostridium
botulinum (strain Okra / Type B1) GN=rsmA PE=3 SV=1
Length = 275
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%)
Query: 17 VWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVI 76
V K +FNK+ GQ+ L + +++ I++ I DTV+EIGPG G +T ++LE+AK+V
Sbjct: 7 VNKYEFKFNKNLGQNFLIDESVLEDIIEGAEISKEDTVIEIGPGVGTLTKELLERAKEVY 66
Query: 77 ACEID 81
+ E+D
Sbjct: 67 SIELD 71
>sp|Q97EX0|RSMA_CLOAB Ribosomal RNA small subunit methyltransferase A OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=rsmA PE=3 SV=1
Length = 276
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 17 VWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVI 76
V K +F+K GQ+ L + ++ IV+ I+ D ++EIGPG G +T ++LE+AKKV
Sbjct: 10 VEKYNFRFSKRLGQNFLTDNTVLDDIVENAEIQKDDFIIEIGPGVGTLTRRLLEKAKKVC 69
Query: 77 ACEIDPS 83
A E+D S
Sbjct: 70 AIELDES 76
>sp|A6TJK9|RSMA_ALKMQ Ribosomal RNA small subunit methyltransferase A OS=Alkaliphilus
metalliredigens (strain QYMF) GN=rsmA PE=3 SV=1
Length = 287
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 42/65 (64%)
Query: 17 VWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVI 76
V K +F+K GQ+ L + I++ IVD I+P D V+EIGPG G +T I E+A KV+
Sbjct: 14 VEKYKFRFSKSLGQNFLIDQNILEDIVDGADIQPDDCVIEIGPGIGTLTQFIAEKAHKVV 73
Query: 77 ACEID 81
A EID
Sbjct: 74 AIEID 78
>sp|B1VUF9|RSMA_STRGG Ribosomal RNA small subunit methyltransferase A OS=Streptomyces
griseus subsp. griseus (strain JCM 4626 / NBRC 13350)
GN=rsmA PE=3 SV=1
Length = 291
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 20 ICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACE 79
+ ++ K GQ+ + + ++ IV +RP DTV+E+GPG G++T+ +LE A +V+A E
Sbjct: 22 LGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDTVVEVGPGLGSLTLALLEAADRVVAVE 81
Query: 80 IDPSCKSYFPSLYYFR 95
ID + P+ R
Sbjct: 82 IDDVLAAALPATVQAR 97
>sp|B1KRY8|RSMA_CLOBM Ribosomal RNA small subunit methyltransferase A OS=Clostridium
botulinum (strain Loch Maree / Type A3) GN=rsmA PE=3
SV=1
Length = 275
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 17 VWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVI 76
V K +FNK+ GQ+ L + +++ I+ I DTV+EIGPG G +T ++LE+AK+V
Sbjct: 7 VNKYEFKFNKNLGQNFLVDESVLEDIIKGAEISKEDTVIEIGPGVGTLTKELLERAKEVY 66
Query: 77 ACEID 81
+ E+D
Sbjct: 67 SIELD 71
>sp|Q8PU18|RSMA_METMA Probable ribosomal RNA small subunit methyltransferase A
OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647
/ Goe1 / Go1 / JCM 11833 / OCM 88) GN=rsmA PE=3 SV=2
Length = 271
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 28 FGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKS 86
F QH L + + IV + P DTVLEIG G GN+T ++ +AKKVIA E+DP+ S
Sbjct: 16 FDQHFLIDAGYLDRIVAAAELSPQDTVLEIGAGIGNLTERLARRAKKVIAVELDPALVS 74
>sp|Q47SX4|RSMA_THEFY Ribosomal RNA small subunit methyltransferase A OS=Thermobifida
fusca (strain YX) GN=rsmA PE=3 SV=1
Length = 287
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 13 VCRTVWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA 72
V R ++ I+ K GQ+ + +P ++ IV + P D V+E+GPG G++T+ +L
Sbjct: 17 VRRLAAQLGIRPTKTLGQNFVIDPGTVRRIVRAAQVSPDDVVVEVGPGLGSLTLALLPHV 76
Query: 73 KKVIACEIDPSCKSYFPS 90
+ V A EIDP P
Sbjct: 77 RHVTAVEIDPRLAEALPG 94
>sp|A1A3W3|RSMA_BIFAA Ribosomal RNA small subunit methyltransferase A
OS=Bifidobacterium adolescentis (strain ATCC 15703 /
DSM 20083 / NCTC 11814 / E194a) GN=rsmA PE=3 SV=1
Length = 303
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 13 VCRTVWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA 72
+ R I K FGQ+ + +P ++ IV + + D VLE+GPG G++T+ ILE
Sbjct: 19 IRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTADDHVLEVGPGLGSLTLAILETG 78
Query: 73 KKVIACEIDPSCKSYFP 89
+ A EIDP P
Sbjct: 79 ATMTAVEIDPPVAERLP 95
>sp|Q9KGK4|RSMA_BACHD Ribosomal RNA small subunit methyltransferase A OS=Bacillus
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344
/ JCM 9153 / C-125) GN=rsmA PE=3 SV=1
Length = 289
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 24 FNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
F K GQ+ L +P ++++IVD ++ P +EIGPG G +T ++ QAK+V+A EID
Sbjct: 22 FKKSLGQNFLIDPNVLRNIVDVASLTPQSGAIEIGPGIGALTEQLARQAKRVVAFEIDQR 81
Query: 84 CKSYF-PSLYYFRNL-CLQEVPTDFDIKTLIDTVLNE 118
+L + N+ + E D+K +I T E
Sbjct: 82 LIPVLRETLAPYENVTVINEDVLKADVKQVIATTFEE 118
>sp|A1TEH3|RSMA_MYCVP Ribosomal RNA small subunit methyltransferase A OS=Mycobacterium
vanbaalenii (strain DSM 7251 / PYR-1) GN=rsmA PE=3 SV=1
Length = 311
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 26 KDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCK 85
K FGQ+ + + ++ IV +I +D VLE+GPG G++T+ +L++ KV A EIDP
Sbjct: 24 KSFGQNFVHDANTVRRIVSASSINRSDHVLEVGPGLGSLTLALLDRGAKVTAVEIDPVLA 83
Query: 86 SYFPS 90
+ P+
Sbjct: 84 NQLPT 88
>sp|Q5N2S8|RSMA_SYNP6 Ribosomal RNA small subunit methyltransferase A OS=Synechococcus
sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
GN=rsmA PE=3 SV=1
Length = 279
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 25 NKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEID 81
K FGQH L++ I+ IV +RP+D VLEIGPG G +T ++L ++A E+D
Sbjct: 4 RKRFGQHWLRSEAILDRIVAAAELRPSDRVLEIGPGRGALTQRLLAAVDGLVAVELD 60
>sp|Q31RH6|RSMA_SYNE7 Ribosomal RNA small subunit methyltransferase A OS=Synechococcus
elongatus (strain PCC 7942) GN=rsmA PE=3 SV=1
Length = 279
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 25 NKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEID 81
K FGQH L++ I+ IV +RP+D VLEIGPG G +T ++L ++A E+D
Sbjct: 4 RKRFGQHWLRSEAILDRIVAAAELRPSDRVLEIGPGRGALTQRLLAAVDGLVAVELD 60
>sp|B7GPE3|RSMA_BIFLS Ribosomal RNA small subunit methyltransferase A
OS=Bifidobacterium longum subsp. infantis (strain ATCC
15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12)
GN=rsmA PE=3 SV=1
Length = 307
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 13 VCRTVWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA 72
+ R I K FGQ+ + +P ++ IV + + D V+E+GPG G++T+ ILE
Sbjct: 17 IRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAILETG 76
Query: 73 KKVIACEIDPSCKSYFPS 90
+ A EIDP P
Sbjct: 77 ATMTAVEIDPPLAERLPG 94
>sp|Q8G6I3|RSMA_BIFLO Ribosomal RNA small subunit methyltransferase A
OS=Bifidobacterium longum (strain NCC 2705) GN=rsmA
PE=3 SV=1
Length = 308
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 13 VCRTVWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA 72
+ R I K FGQ+ + +P ++ IV + + D V+E+GPG G++T+ ILE
Sbjct: 17 IRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAILETG 76
Query: 73 KKVIACEIDPSCKSYFPS 90
+ A EIDP P
Sbjct: 77 ATMTAVEIDPPLAERLPG 94
>sp|Q82HC3|RSMA_STRAW Ribosomal RNA small subunit methyltransferase A OS=Streptomyces
avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 /
NCIMB 12804 / NRRL 8165 / MA-4680) GN=rsmA PE=3 SV=1
Length = 295
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 20 ICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACE 79
+ ++ K GQ+ + + ++ IV +RP D V+E+GPG G++T+ +LE A +VIA E
Sbjct: 22 LGVRPTKQRGQNFVIDANTVRRIVRTAGVRPDDVVVEVGPGLGSLTLALLEAADRVIAVE 81
Query: 80 IDPSCKSYFPSLYYFR 95
ID P+ R
Sbjct: 82 IDDVLAGALPATIAAR 97
>sp|B1XIV9|RSMA_SYNP2 Ribosomal RNA small subunit methyltransferase A OS=Synechococcus
sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rsmA PE=3
SV=1
Length = 273
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 26 KDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEID 81
K FGQH L + I+ IV ++PTD VLEIGPG G +T ++L Q + +++ EID
Sbjct: 5 KRFGQHWLTDQQILDEIVAAANLQPTDRVLEIGPGKGALTSRLLPQVEALLSVEID 60
>sp|A4T6P3|RSMA_MYCGI Ribosomal RNA small subunit methyltransferase A OS=Mycobacterium
gilvum (strain PYR-GCK) GN=rsmA PE=3 SV=1
Length = 314
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 41/66 (62%)
Query: 25 NKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSC 84
K FGQ+ + + ++ IV ++ +D VLE+GPG G++T+ +L++ +V A EIDP
Sbjct: 23 RKSFGQNFVHDANTVRRIVSASSVNRSDHVLEVGPGLGSLTLALLDRGARVTAVEIDPVL 82
Query: 85 KSYFPS 90
+ P+
Sbjct: 83 ATQLPT 88
>sp|Q2JVW2|RSMA_SYNJA Ribosomal RNA small subunit methyltransferase A OS=Synechococcus
sp. (strain JA-3-3Ab) GN=rsmA PE=3 SV=1
Length = 279
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 25 NKDFGQHILKNPLIIQSIVDKGAIRPTDT----VLEIGPGTGNMTVKILEQAKKVIACEI 80
K FGQH LK+P + ++IV + P VLEIGPGTG +T ++L Q V+A EI
Sbjct: 5 RKRFGQHWLKDPAVHEAIVRAAQLPPPQRDPAWVLEIGPGTGQLTQRLLAQGVHVVAVEI 64
Query: 81 D 81
D
Sbjct: 65 D 65
>sp|Q04DR8|RSMA_OENOB Ribosomal RNA small subunit methyltransferase A OS=Oenococcus
oeni (strain ATCC BAA-331 / PSU-1) GN=rsmA PE=3 SV=1
Length = 292
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 40/57 (70%)
Query: 25 NKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEID 81
+K GQ+ L + ++Q IV AI P DTV+EIGPG G++T ++ + AK+V+A EID
Sbjct: 25 SKRLGQNFLIDLNVLQEIVQGAAIGPDDTVIEIGPGIGSLTEQLAKAAKQVVAYEID 81
>sp|A6W6U4|RSMA_KINRD Ribosomal RNA small subunit methyltransferase A OS=Kineococcus
radiotolerans (strain ATCC BAA-149 / DSM 14245 /
SRS30216) GN=rsmA PE=3 SV=1
Length = 300
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 19 KICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIAC 78
++ I+ K GQ+ + + ++ IV + P D V+E+GPG G++T+ +LE +V+A
Sbjct: 24 RLSIRPTKTLGQNFVVDANTVRRIVRVADLTPEDVVVEVGPGLGSLTLALLEAVDRVVAV 83
Query: 79 EIDPSCKSYFPSLYYFRN 96
EIDP + P+ R
Sbjct: 84 EIDPVLAAELPATVAARG 101
>sp|Q8TQU8|RSMA_METAC Probable ribosomal RNA small subunit methyltransferase A
OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM
2834 / JCM 12185 / C2A) GN=rsmA PE=3 SV=1
Length = 269
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 28 FGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKS 86
F QH L + + IV + P DT+LEIG G GN+T ++ +AKKVIA E+DP+ S
Sbjct: 16 FDQHFLIDIGYLDRIVVAAELSPQDTILEIGAGIGNLTERLARRAKKVIAVELDPALVS 74
>sp|Q3ZZE6|RSMA_DEHSC Ribosomal RNA small subunit methyltransferase A
OS=Dehalococcoides sp. (strain CBDB1) GN=rsmA PE=3 SV=1
Length = 291
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 21 CIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEI 80
++ K GQH L + ++ I+ ++PTDTV+E+GPG G +T ++L++A +VIA E+
Sbjct: 27 TLKARKGLGQHFLISQGVLNKILAAADLKPTDTVIEVGPGLGALTEELLKRAGQVIAVEL 86
Query: 81 D 81
D
Sbjct: 87 D 87
>sp|B1N079|RSMA_LEUCK Ribosomal RNA small subunit methyltransferase A OS=Leuconostoc
citreum (strain KM20) GN=rsmA PE=3 SV=1
Length = 295
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 26 KDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
K FGQ+ L + ++ IVD I D V+EIGPG G +T ++ AKKV+A EIDP
Sbjct: 26 KKFGQNFLTDLNVLHGIVDVAGITSEDYVIEIGPGIGALTEQLARSAKKVVAFEIDP 82
>sp|A5GTK9|RSMA_SYNR3 Ribosomal RNA small subunit methyltransferase A OS=Synechococcus
sp. (strain RCC307) GN=rsmA PE=3 SV=1
Length = 274
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 25 NKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEID 81
K FGQH LK+ ++Q IV A++P D VLE+GPG G +T ++L A V A E+D
Sbjct: 9 RKRFGQHWLKDESVLQRIVAAAALQPDDHVLEVGPGRGALTAQLLASPAASVQAVELD 66
>sp|A5FS52|RSMA_DEHSB Ribosomal RNA small subunit methyltransferase A
OS=Dehalococcoides sp. (strain BAV1) GN=rsmA PE=3 SV=1
Length = 291
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 21 CIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEI 80
++ K GQH L + ++ I+ ++PTDTV+E+GPG G +T ++L++A +VIA E+
Sbjct: 27 TLKARKGLGQHFLISQGVLNKILAAADLKPTDTVIEVGPGLGVLTEELLKRAGQVIAVEV 86
Query: 81 D 81
D
Sbjct: 87 D 87
>sp|Q03HF6|RSMA_PEDPA Ribosomal RNA small subunit methyltransferase A OS=Pediococcus
pentosaceus (strain ATCC 25745 / 183-1w) GN=rsmA PE=3
SV=1
Length = 297
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 19 KICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIAC 78
K + K GQ+ L +P ++ +IVD + P D V+E+GPG G++T +I ++A V+A
Sbjct: 19 KYGLSAKKSLGQNFLTDPNVLLNIVDAAEVSPEDDVIEVGPGIGSLTEQIAKRAHHVLAF 78
Query: 79 EID 81
EID
Sbjct: 79 EID 81
>sp|Q6NIA2|RSMA_CORDI Ribosomal RNA small subunit methyltransferase A
OS=Corynebacterium diphtheriae (strain ATCC 700971 /
NCTC 13129 / Biotype gravis) GN=rsmA PE=3 SV=1
Length = 295
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 19 KICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIAC 78
K+ + K GQ+ + +P ++ IV + D V+E+GPG G++T+ +L+ A+KV A
Sbjct: 21 KLDVTPTKKLGQNFVHDPNTVRMIVSAADLNSDDHVIEVGPGLGSLTLALLDTAQKVTAV 80
Query: 79 EIDPSCKSYFP 89
EIDP P
Sbjct: 81 EIDPRLAQQLP 91
>sp|Q0SQ34|RSMA_CLOPS Ribosomal RNA small subunit methyltransferase A OS=Clostridium
perfringens (strain SM101 / Type A) GN=rsmA PE=3 SV=1
Length = 285
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 17 VWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVI 76
V K +F+K GQ+ L + + + IV+ + D V+EIGPG G +TV++L++AK+V+
Sbjct: 15 VQKYNFRFSKSLGQNFLIDDSVPRDIVNGADVCEDDLVIEIGPGVGTLTVQLLKRAKRVV 74
Query: 77 ACEIDPS 83
A E+D S
Sbjct: 75 AIELDSS 81
>sp|Q8XHG8|RSMA_CLOPE Ribosomal RNA small subunit methyltransferase A OS=Clostridium
perfringens (strain 13 / Type A) GN=rsmA PE=3 SV=1
Length = 285
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 17 VWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVI 76
V K +F+K GQ+ L + + + IV+ + D V+EIGPG G +TV++L++AK+V+
Sbjct: 15 VQKYNFRFSKSLGQNFLIDDSVPRDIVNGADVCEDDLVIEIGPGVGTLTVQLLKRAKRVV 74
Query: 77 ACEIDPS 83
A E+D S
Sbjct: 75 AIELDSS 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.142 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,557,949
Number of Sequences: 539616
Number of extensions: 2371353
Number of successful extensions: 8806
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 8064
Number of HSP's gapped (non-prelim): 837
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)