Query psy1134
Match_columns 149
No_of_seqs 107 out of 1256
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 15:52:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1134.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1134hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2227 UbiG 2-polyprenyl-3-me 99.7 6.3E-16 1.4E-20 113.3 9.8 127 9-145 12-154 (243)
2 KOG1270|consensus 99.6 2.3E-14 5.1E-19 106.1 8.8 101 38-148 70-192 (282)
3 PRK00274 ksgA 16S ribosomal RN 99.5 4.4E-14 9.5E-19 107.1 9.7 81 13-93 5-85 (272)
4 COG2226 UbiE Methylase involve 99.5 8E-14 1.7E-18 103.2 9.3 89 36-125 37-138 (238)
5 KOG0820|consensus 99.5 1.5E-13 3.3E-18 102.2 10.4 73 19-91 27-99 (315)
6 PTZ00338 dimethyladenosine tra 99.5 8E-14 1.7E-18 106.6 7.6 75 19-93 5-79 (294)
7 COG2230 Cfa Cyclopropane fatty 99.5 1.8E-13 4E-18 103.2 8.3 101 37-145 59-170 (283)
8 PRK14896 ksgA 16S ribosomal RN 99.5 2.1E-13 4.6E-18 102.6 7.9 71 23-93 2-72 (258)
9 COG0030 KsgA Dimethyladenosine 99.5 3.2E-13 6.9E-18 100.9 8.8 78 24-101 4-82 (259)
10 PLN02396 hexaprenyldihydroxybe 99.4 6.8E-13 1.5E-17 102.6 9.7 73 50-123 131-215 (322)
11 PRK14103 trans-aconitate 2-met 99.4 5.2E-13 1.1E-17 100.1 8.1 84 38-122 17-105 (255)
12 PRK11207 tellurite resistance 99.4 4.5E-13 9.8E-18 97.0 7.5 79 41-120 21-109 (197)
13 TIGR00477 tehB tellurite resis 99.4 5.4E-13 1.2E-17 96.5 7.3 80 40-120 20-108 (195)
14 PRK05785 hypothetical protein; 99.4 4.3E-13 9.3E-18 99.1 6.5 89 36-125 35-129 (226)
15 TIGR00755 ksgA dimethyladenosi 99.4 8.8E-13 1.9E-17 98.9 8.1 71 23-93 2-72 (253)
16 PF02353 CMAS: Mycolic acid cy 99.4 5.4E-13 1.2E-17 101.1 6.8 102 36-145 48-159 (273)
17 COG4976 Predicted methyltransf 99.4 3.8E-13 8.3E-18 98.1 4.7 110 11-121 85-203 (287)
18 PTZ00098 phosphoethanolamine N 99.4 2.9E-12 6.3E-17 96.7 9.5 105 15-120 15-131 (263)
19 PF12847 Methyltransf_18: Meth 99.4 5.7E-13 1.2E-17 87.5 4.9 63 50-112 1-77 (112)
20 PLN02233 ubiquinone biosynthes 99.4 2.7E-12 5.8E-17 96.8 9.2 86 36-122 59-161 (261)
21 PRK10258 biotin biosynthesis p 99.4 2.9E-12 6.4E-17 95.8 8.3 87 34-121 26-118 (251)
22 PLN02585 magnesium protoporphy 99.4 1.2E-12 2.6E-17 101.0 6.3 86 36-122 127-228 (315)
23 PLN02244 tocopherol O-methyltr 99.4 3.8E-12 8.2E-17 99.3 9.0 85 37-122 100-202 (340)
24 PF01209 Ubie_methyltran: ubiE 99.4 8.3E-13 1.8E-17 98.0 5.1 88 35-123 32-133 (233)
25 PRK11036 putative S-adenosyl-L 99.4 3.7E-12 8.1E-17 95.6 8.7 81 40-122 35-128 (255)
26 TIGR02021 BchM-ChlM magnesium 99.4 3.3E-12 7.2E-17 93.7 8.2 84 37-121 40-134 (219)
27 COG4106 Tam Trans-aconitate me 99.3 4.1E-12 9E-17 91.9 7.9 98 39-145 19-123 (257)
28 PRK01683 trans-aconitate 2-met 99.3 4.1E-12 8.9E-17 95.3 8.1 85 37-122 18-109 (258)
29 PF05401 NodS: Nodulation prot 99.3 1.9E-12 4.2E-17 92.7 5.8 95 26-121 19-121 (201)
30 TIGR02752 MenG_heptapren 2-hep 99.3 9.3E-12 2E-16 91.8 9.5 107 14-121 8-129 (231)
31 PF08242 Methyltransf_12: Meth 99.3 3.1E-13 6.7E-18 87.2 1.2 82 55-146 1-97 (99)
32 TIGR03587 Pse_Me-ase pseudamin 99.3 7.6E-12 1.6E-16 91.2 8.5 70 50-120 43-119 (204)
33 PF13847 Methyltransf_31: Meth 99.3 2E-12 4.3E-17 89.7 5.0 73 49-122 2-89 (152)
34 PRK12335 tellurite resistance 99.3 5E-12 1.1E-16 96.5 7.5 71 49-120 119-198 (287)
35 PF13489 Methyltransf_23: Meth 99.3 5.2E-12 1.1E-16 87.6 6.1 81 38-121 9-93 (161)
36 PRK06202 hypothetical protein; 99.3 1.4E-11 3.1E-16 91.1 7.9 77 45-122 55-145 (232)
37 PRK11705 cyclopropane fatty ac 99.3 1.9E-11 4.1E-16 96.8 9.0 82 38-120 155-242 (383)
38 TIGR00452 methyltransferase, p 99.2 2.6E-11 5.7E-16 93.5 8.0 81 41-122 112-204 (314)
39 PF00398 RrnaAD: Ribosomal RNA 99.2 2.9E-11 6.2E-16 91.2 8.0 78 22-99 2-80 (262)
40 PF03848 TehB: Tellurite resis 99.2 2.2E-11 4.8E-16 87.6 6.9 79 42-121 22-109 (192)
41 PF08241 Methyltransf_11: Meth 99.2 2E-11 4.3E-16 77.3 5.4 65 55-120 1-74 (95)
42 PLN02336 phosphoethanolamine N 99.2 4.3E-11 9.2E-16 97.1 8.4 98 24-122 238-348 (475)
43 PRK15068 tRNA mo(5)U34 methylt 99.2 4.1E-11 8.9E-16 92.9 7.7 82 40-122 112-205 (322)
44 PRK07580 Mg-protoporphyrin IX 99.2 3E-11 6.4E-16 88.9 6.6 82 39-121 49-142 (230)
45 PRK15451 tRNA cmo(5)U34 methyl 99.2 1.2E-10 2.6E-15 87.1 9.9 71 50-121 56-140 (247)
46 KOG1541|consensus 99.2 1.6E-11 3.4E-16 89.2 4.8 97 11-112 14-119 (270)
47 PF07021 MetW: Methionine bios 99.2 4.3E-11 9.4E-16 85.5 5.9 82 41-125 6-94 (193)
48 TIGR00537 hemK_rel_arch HemK-r 99.2 4.9E-11 1.1E-15 84.9 6.2 69 44-112 13-89 (179)
49 PF13649 Methyltransf_25: Meth 99.2 2.6E-11 5.6E-16 78.6 4.2 68 54-121 1-83 (101)
50 PRK00107 gidB 16S rRNA methylt 99.2 1.3E-10 2.8E-15 83.6 7.4 63 50-112 45-119 (187)
51 COG2518 Pcm Protein-L-isoaspar 99.2 1E-10 2.2E-15 84.7 6.6 92 28-121 51-153 (209)
52 COG2264 PrmA Ribosomal protein 99.1 1.6E-10 3.4E-15 88.1 7.1 88 23-111 136-235 (300)
53 PRK05134 bifunctional 3-demeth 99.1 7.7E-10 1.7E-14 81.7 10.6 86 36-122 34-130 (233)
54 PRK08317 hypothetical protein; 99.1 3.5E-10 7.7E-15 83.0 8.7 86 36-122 5-103 (241)
55 TIGR02469 CbiT precorrin-6Y C5 99.1 2.9E-10 6.2E-15 75.5 7.1 57 36-92 5-63 (124)
56 smart00650 rADc Ribosomal RNA 99.1 1.8E-10 4E-15 81.4 6.4 55 39-93 2-56 (169)
57 TIGR00080 pimt protein-L-isoas 99.1 3E-10 6.4E-15 83.3 7.3 60 34-93 61-123 (215)
58 PF06325 PrmA: Ribosomal prote 99.1 1.8E-10 3.8E-15 88.2 6.2 89 22-111 134-231 (295)
59 PLN02490 MPBQ/MSBQ methyltrans 99.1 5.8E-10 1.2E-14 86.9 9.1 86 36-122 98-194 (340)
60 PRK13944 protein-L-isoaspartat 99.1 4.3E-10 9.3E-15 81.9 7.8 86 34-120 56-156 (205)
61 TIGR03840 TMPT_Se_Te thiopurin 99.1 7.3E-10 1.6E-14 81.3 8.9 49 42-90 26-74 (213)
62 smart00828 PKS_MT Methyltransf 99.1 4.7E-10 1E-14 82.4 7.6 69 52-121 1-82 (224)
63 TIGR02081 metW methionine bios 99.1 3E-10 6.5E-15 81.9 6.4 82 41-125 6-94 (194)
64 PRK13942 protein-L-isoaspartat 99.1 4.9E-10 1.1E-14 82.1 7.5 84 28-112 55-152 (212)
65 PRK08287 cobalt-precorrin-6Y C 99.1 5.8E-10 1.3E-14 79.9 7.5 78 34-111 15-103 (187)
66 PF05175 MTS: Methyltransferas 99.1 1.6E-10 3.4E-15 81.8 4.1 72 41-112 22-105 (170)
67 PLN02336 phosphoethanolamine N 99.1 7.1E-10 1.5E-14 90.0 8.3 86 36-122 23-119 (475)
68 PRK07402 precorrin-6B methylas 99.1 6.7E-10 1.5E-14 80.2 7.3 60 34-93 24-85 (196)
69 TIGR00740 methyltransferase, p 99.0 1.4E-09 3.1E-14 80.8 9.1 71 50-121 53-137 (239)
70 PRK00517 prmA ribosomal protei 99.0 5.6E-10 1.2E-14 83.6 6.7 63 49-111 118-185 (250)
71 PHA03412 putative methyltransf 99.0 5.7E-10 1.2E-14 82.5 6.2 87 23-112 25-121 (241)
72 PRK00216 ubiE ubiquinone/menaq 99.0 3.8E-09 8.3E-14 77.7 10.6 86 35-121 36-136 (239)
73 COG4123 Predicted O-methyltran 99.0 6.5E-10 1.4E-14 82.7 6.2 105 42-146 36-164 (248)
74 TIGR00138 gidB 16S rRNA methyl 99.0 9.5E-10 2.1E-14 78.7 6.8 63 50-112 42-116 (181)
75 TIGR02072 BioC biotin biosynth 99.0 8.5E-10 1.9E-14 81.1 6.6 85 37-122 18-114 (240)
76 smart00138 MeTrc Methyltransfe 99.0 1.3E-09 2.9E-14 82.3 7.7 42 50-91 99-151 (264)
77 PRK14967 putative methyltransf 99.0 1.1E-09 2.3E-14 80.7 6.9 58 36-93 22-80 (223)
78 PRK00312 pcm protein-L-isoaspa 99.0 1.6E-09 3.4E-14 79.2 7.4 60 34-93 62-121 (212)
79 PRK04148 hypothetical protein; 99.0 3.1E-09 6.7E-14 72.2 7.0 56 37-92 3-59 (134)
80 KOG1540|consensus 98.9 3.4E-09 7.4E-14 78.7 7.6 94 27-125 81-196 (296)
81 PRK09489 rsmC 16S ribosomal RN 98.9 2E-09 4.3E-14 84.1 6.3 73 40-112 186-268 (342)
82 PRK06922 hypothetical protein; 98.9 3E-09 6.5E-14 88.4 7.4 73 46-119 414-500 (677)
83 PRK13168 rumA 23S rRNA m(5)U19 98.9 2.8E-09 6E-14 86.0 7.1 58 36-93 283-340 (443)
84 TIGR00406 prmA ribosomal prote 98.9 3.6E-09 7.9E-14 80.9 7.3 70 24-94 134-204 (288)
85 COG2263 Predicted RNA methylas 98.9 4.5E-09 9.8E-14 74.8 7.2 61 34-94 26-90 (198)
86 PHA03411 putative methyltransf 98.9 4.3E-09 9.3E-14 79.5 7.3 82 28-112 45-133 (279)
87 PRK00377 cbiT cobalt-precorrin 98.9 4.7E-09 1E-13 76.0 7.3 60 34-93 24-86 (198)
88 PRK03522 rumB 23S rRNA methylu 98.9 3.4E-09 7.3E-14 82.0 6.6 52 43-94 166-217 (315)
89 PF08003 Methyltransf_9: Prote 98.9 6.4E-09 1.4E-13 79.2 7.8 85 39-124 104-200 (315)
90 PF01135 PCMT: Protein-L-isoas 98.9 4.4E-09 9.6E-14 76.9 6.7 80 33-112 55-148 (209)
91 PRK13256 thiopurine S-methyltr 98.9 2.3E-08 5E-13 73.9 10.2 83 1-90 1-83 (226)
92 PRK11873 arsM arsenite S-adeno 98.9 5.2E-09 1.1E-13 79.1 6.8 74 47-121 74-161 (272)
93 TIGR01983 UbiG ubiquinone bios 98.9 1.3E-08 2.8E-13 74.6 8.5 87 35-122 26-128 (224)
94 PRK15001 SAM-dependent 23S rib 98.9 4.6E-09 9.9E-14 82.9 6.5 55 39-93 217-273 (378)
95 PRK13255 thiopurine S-methyltr 98.9 6.8E-09 1.5E-13 76.4 7.0 44 46-89 33-76 (218)
96 COG2242 CobL Precorrin-6B meth 98.9 8.5E-09 1.8E-13 73.5 7.1 78 34-111 18-108 (187)
97 PRK14968 putative methyltransf 98.9 7.1E-09 1.5E-13 73.8 6.6 52 42-93 15-66 (188)
98 TIGR03438 probable methyltrans 98.9 7.2E-09 1.6E-13 79.7 6.8 54 37-92 52-108 (301)
99 TIGR01177 conserved hypothetic 98.8 1.1E-08 2.4E-13 79.6 7.7 60 34-93 166-225 (329)
100 TIGR00091 tRNA (guanine-N(7)-) 98.8 2.2E-09 4.7E-14 77.6 3.3 44 50-93 16-61 (194)
101 PRK13943 protein-L-isoaspartat 98.8 1.1E-08 2.3E-13 79.4 7.2 61 33-93 63-126 (322)
102 TIGR01934 MenG_MenH_UbiE ubiqu 98.8 1.8E-08 3.8E-13 73.4 7.9 84 36-120 25-120 (223)
103 PRK11088 rrmA 23S rRNA methylt 98.8 1.2E-08 2.7E-13 77.3 7.3 72 40-112 76-158 (272)
104 PRK14121 tRNA (guanine-N(7)-)- 98.8 1.5E-08 3.3E-13 80.0 7.8 98 42-145 114-228 (390)
105 PRK04266 fibrillarin; Provisio 98.8 1.4E-08 3E-13 75.1 6.7 48 45-92 67-116 (226)
106 PRK00121 trmB tRNA (guanine-N( 98.8 1E-08 2.3E-13 74.5 5.9 43 50-92 40-84 (202)
107 PF13659 Methyltransf_26: Meth 98.8 9.7E-09 2.1E-13 67.8 4.9 44 51-94 1-45 (117)
108 TIGR00479 rumA 23S rRNA (uraci 98.8 1.5E-08 3.2E-13 81.5 6.9 57 38-94 280-336 (431)
109 PF02475 Met_10: Met-10+ like- 98.8 6.4E-09 1.4E-13 75.5 3.9 80 17-98 68-151 (200)
110 PRK04457 spermidine synthase; 98.8 5.7E-08 1.2E-12 73.4 8.8 57 37-93 52-111 (262)
111 COG2890 HemK Methylase of poly 98.7 2.1E-08 4.6E-13 76.4 6.1 73 38-111 99-182 (280)
112 TIGR03533 L3_gln_methyl protei 98.7 3.3E-08 7.1E-13 75.5 6.9 49 45-93 116-166 (284)
113 PRK14966 unknown domain/N5-glu 98.7 2.8E-08 6.2E-13 79.1 6.4 55 37-93 240-296 (423)
114 TIGR02085 meth_trns_rumB 23S r 98.7 2.9E-08 6.3E-13 78.5 6.5 64 32-95 211-278 (374)
115 COG2813 RsmC 16S RNA G1207 met 98.7 2.4E-08 5.1E-13 76.1 5.6 60 39-98 147-208 (300)
116 PRK10909 rsmD 16S rRNA m(2)G96 98.7 4.5E-08 9.8E-13 71.1 6.8 61 35-95 37-99 (199)
117 TIGR03704 PrmC_rel_meth putati 98.7 4.7E-08 1E-12 73.4 6.9 59 36-94 71-132 (251)
118 TIGR00536 hemK_fam HemK family 98.7 3.8E-08 8.2E-13 75.1 6.5 58 36-93 99-159 (284)
119 PRK00811 spermidine synthase; 98.7 6E-08 1.3E-12 74.0 7.4 43 50-92 76-120 (283)
120 PRK09328 N5-glutamine S-adenos 98.7 4.8E-08 1E-12 73.7 6.8 58 36-93 94-153 (275)
121 TIGR02143 trmA_only tRNA (urac 98.7 4.2E-08 9E-13 77.1 6.5 60 36-96 184-243 (353)
122 TIGR03534 RF_mod_PrmC protein- 98.7 5.9E-08 1.3E-12 72.1 6.7 57 36-93 74-132 (251)
123 KOG1500|consensus 98.7 4.4E-08 9.5E-13 75.6 5.9 55 38-93 165-220 (517)
124 PF05958 tRNA_U5-meth_tr: tRNA 98.7 5.9E-08 1.3E-12 76.2 6.8 61 36-97 183-243 (352)
125 PLN02781 Probable caffeoyl-CoA 98.7 6.1E-08 1.3E-12 72.1 6.6 62 34-95 52-116 (234)
126 KOG3010|consensus 98.7 7.1E-08 1.5E-12 71.1 6.5 80 36-118 21-112 (261)
127 KOG1271|consensus 98.7 3.6E-08 7.9E-13 70.0 4.8 82 10-92 19-111 (227)
128 TIGR00478 tly hemolysin TlyA f 98.7 7.9E-08 1.7E-12 71.2 6.6 51 40-90 64-117 (228)
129 TIGR02716 C20_methyl_CrtF C-20 98.7 1.7E-07 3.6E-12 72.1 8.7 55 38-93 137-193 (306)
130 KOG3420|consensus 98.7 2.3E-08 4.9E-13 68.5 3.4 67 28-95 23-94 (185)
131 TIGR00095 RNA methyltransferas 98.7 8.5E-08 1.8E-12 69.1 6.6 63 33-95 31-95 (189)
132 PRK11188 rrmJ 23S rRNA methylt 98.7 5.2E-08 1.1E-12 71.2 5.6 34 49-82 50-86 (209)
133 KOG1499|consensus 98.6 2.9E-08 6.4E-13 76.6 3.9 56 36-92 46-102 (346)
134 PRK11805 N5-glutamine S-adenos 98.6 8.9E-08 1.9E-12 73.9 6.6 43 51-93 134-178 (307)
135 KOG2361|consensus 98.6 5.3E-08 1.2E-12 71.8 4.8 105 15-120 30-158 (264)
136 PRK05031 tRNA (uracil-5-)-meth 98.6 1.2E-07 2.6E-12 74.7 6.7 57 38-95 195-251 (362)
137 PRK11727 23S rRNA mA1618 methy 98.6 1.6E-07 3.4E-12 72.8 6.8 60 36-95 92-161 (321)
138 COG1041 Predicted DNA modifica 98.6 1.8E-07 3.9E-12 72.5 6.9 79 16-95 164-242 (347)
139 PF02384 N6_Mtase: N-6 DNA Met 98.6 1.6E-07 3.6E-12 72.2 6.7 76 16-92 13-97 (311)
140 PF05219 DREV: DREV methyltran 98.6 1.9E-07 4.1E-12 69.8 6.6 96 27-123 66-168 (265)
141 PRK01544 bifunctional N5-gluta 98.6 1.6E-07 3.4E-12 77.1 6.7 43 51-93 139-183 (506)
142 KOG4300|consensus 98.5 1E-07 2.2E-12 68.9 4.5 79 46-125 72-164 (252)
143 PRK10901 16S rRNA methyltransf 98.5 1.9E-07 4.1E-12 75.1 6.5 60 34-93 228-289 (427)
144 PLN03075 nicotianamine synthas 98.5 4.5E-07 9.7E-12 69.4 7.9 78 40-119 113-207 (296)
145 COG2265 TrmA SAM-dependent met 98.5 2E-07 4.4E-12 74.9 6.1 63 36-98 279-341 (432)
146 PLN02366 spermidine synthase 98.5 7.4E-07 1.6E-11 68.8 8.3 44 49-92 90-135 (308)
147 PRK11783 rlmL 23S rRNA m(2)G24 98.5 2.7E-07 5.7E-12 78.4 6.2 62 32-95 522-584 (702)
148 PRK15128 23S rRNA m(5)C1962 me 98.5 4.3E-07 9.3E-12 72.4 6.9 62 32-95 204-266 (396)
149 PF01596 Methyltransf_3: O-met 98.5 2.6E-07 5.7E-12 67.4 5.0 60 36-95 31-93 (205)
150 PLN02476 O-methyltransferase 98.4 7.7E-07 1.7E-11 67.7 7.3 64 34-97 102-168 (278)
151 PRK14904 16S rRNA methyltransf 98.4 4.8E-07 1E-11 73.1 6.6 56 38-93 238-296 (445)
152 KOG2904|consensus 98.4 4.8E-07 1E-11 68.0 6.0 57 36-92 131-192 (328)
153 cd02440 AdoMet_MTases S-adenos 98.4 5.3E-07 1.2E-11 56.6 5.5 37 53-89 1-38 (107)
154 TIGR00563 rsmB ribosomal RNA s 98.4 4.6E-07 1E-11 72.9 6.3 59 35-93 223-283 (426)
155 TIGR00446 nop2p NOL1/NOP2/sun 98.4 5E-07 1.1E-11 68.3 6.1 51 43-93 64-117 (264)
156 TIGR00438 rrmJ cell division p 98.4 5.3E-07 1.2E-11 64.6 5.8 39 46-84 28-69 (188)
157 PRK14902 16S rRNA methyltransf 98.4 5E-07 1.1E-11 73.0 6.3 58 36-93 236-296 (444)
158 PF05724 TPMT: Thiopurine S-me 98.4 1E-06 2.2E-11 64.9 7.1 53 36-89 24-76 (218)
159 PRK01581 speE spermidine synth 98.4 9.4E-07 2E-11 69.3 7.2 42 49-90 149-192 (374)
160 KOG2899|consensus 98.4 4.2E-07 9E-12 67.3 4.7 44 50-93 58-103 (288)
161 PRK14903 16S rRNA methyltransf 98.4 6.8E-07 1.5E-11 72.0 6.3 58 36-93 223-283 (431)
162 TIGR00417 speE spermidine synt 98.4 1.1E-06 2.3E-11 66.7 7.0 44 49-92 71-116 (270)
163 COG0220 Predicted S-adenosylme 98.4 1.2E-06 2.6E-11 64.8 6.8 97 52-148 50-162 (227)
164 KOG2187|consensus 98.4 4.5E-07 9.7E-12 73.2 4.8 77 22-98 351-431 (534)
165 PTZ00146 fibrillarin; Provisio 98.4 5.8E-07 1.3E-11 68.6 5.2 41 45-85 127-170 (293)
166 COG2519 GCD14 tRNA(1-methylade 98.4 4.9E-07 1.1E-11 67.3 4.5 57 38-94 82-141 (256)
167 PRK00050 16S rRNA m(4)C1402 me 98.4 9.3E-07 2E-11 67.8 6.1 57 36-92 5-64 (296)
168 PRK14901 16S rRNA methyltransf 98.4 9.3E-07 2E-11 71.3 6.1 59 35-93 237-298 (434)
169 PLN02672 methionine S-methyltr 98.3 5.2E-07 1.1E-11 79.2 4.7 44 51-94 119-164 (1082)
170 PF02390 Methyltransf_4: Putat 98.3 1.6E-06 3.4E-11 62.8 6.5 93 53-145 20-126 (195)
171 COG3963 Phospholipid N-methylt 98.3 4.3E-06 9.2E-11 58.7 8.0 79 15-94 14-95 (194)
172 PRK03612 spermidine synthase; 98.3 1.1E-06 2.5E-11 72.3 6.0 43 49-91 296-340 (521)
173 PF13679 Methyltransf_32: Meth 98.3 2.3E-06 5E-11 58.7 6.3 44 49-92 24-73 (141)
174 PF08704 GCD14: tRNA methyltra 98.3 2.4E-06 5.1E-11 64.0 6.5 59 36-94 26-87 (247)
175 COG4122 Predicted O-methyltran 98.3 2.1E-06 4.6E-11 63.1 6.1 61 36-96 45-108 (219)
176 PF10294 Methyltransf_16: Puta 98.3 2E-06 4.3E-11 61.1 5.5 46 48-94 43-90 (173)
177 PF01170 UPF0020: Putative RNA 98.3 3.9E-06 8.5E-11 59.9 6.9 63 34-96 12-85 (179)
178 PF03602 Cons_hypoth95: Conser 98.2 2.6E-06 5.6E-11 61.1 5.2 60 34-93 24-86 (183)
179 TIGR02987 met_A_Alw26 type II 98.2 2.2E-06 4.8E-11 70.6 5.4 66 26-92 1-83 (524)
180 PF08123 DOT1: Histone methyla 98.2 7.2E-06 1.6E-10 59.8 7.0 72 17-91 12-85 (205)
181 COG2521 Predicted archaeal met 98.2 1E-06 2.2E-11 65.0 2.5 104 44-148 128-242 (287)
182 PF03291 Pox_MCEL: mRNA cappin 98.2 4.3E-06 9.3E-11 65.2 6.0 93 50-148 62-182 (331)
183 PRK04338 N(2),N(2)-dimethylgua 98.2 4.5E-06 9.7E-11 66.3 6.2 64 34-97 40-106 (382)
184 COG1092 Predicted SAM-dependen 98.2 4.4E-06 9.6E-11 66.3 5.9 64 32-97 201-265 (393)
185 PLN02589 caffeoyl-CoA O-methyl 98.1 8.3E-06 1.8E-10 61.1 6.5 61 35-95 64-127 (247)
186 PF09445 Methyltransf_15: RNA 98.1 3.8E-06 8.2E-11 59.1 4.4 42 52-93 1-42 (163)
187 TIGR01444 fkbM_fam methyltrans 98.1 4.3E-06 9.3E-11 57.0 4.3 41 53-93 1-43 (143)
188 KOG3191|consensus 98.1 1.2E-05 2.6E-10 57.2 6.2 49 44-92 37-88 (209)
189 COG2520 Predicted methyltransf 98.0 7E-06 1.5E-10 64.0 4.9 82 16-99 154-238 (341)
190 KOG3987|consensus 98.0 3.3E-06 7.2E-11 61.3 2.0 96 26-123 85-186 (288)
191 PF09243 Rsm22: Mitochondrial 98.0 5.3E-05 1.1E-09 57.7 8.5 99 36-142 19-131 (274)
192 PRK01544 bifunctional N5-gluta 97.9 1.3E-05 2.7E-10 66.0 4.8 96 50-145 347-455 (506)
193 PRK11524 putative methyltransf 97.9 4.2E-05 9E-10 58.5 7.0 57 36-93 195-251 (284)
194 PF01555 N6_N4_Mtase: DNA meth 97.9 3.5E-05 7.6E-10 56.0 6.3 56 34-90 176-231 (231)
195 COG0742 N6-adenine-specific me 97.9 5.8E-05 1.2E-09 54.1 7.1 61 34-94 25-88 (187)
196 COG4076 Predicted RNA methylas 97.9 7.9E-06 1.7E-10 58.5 2.7 47 50-96 32-78 (252)
197 PF00891 Methyltransf_2: O-met 97.9 3.6E-05 7.7E-10 57.2 5.8 80 40-122 90-174 (241)
198 PF05185 PRMT5: PRMT5 arginine 97.8 2.3E-05 5.1E-10 63.4 4.0 41 51-91 187-233 (448)
199 PF06080 DUF938: Protein of un 97.8 0.00011 2.3E-09 53.5 6.7 102 36-145 11-135 (204)
200 PRK13699 putative methylase; P 97.7 0.00014 3E-09 53.9 7.0 58 35-93 149-206 (227)
201 COG0421 SpeE Spermidine syntha 97.7 0.00021 4.6E-09 54.6 7.7 89 51-145 77-183 (282)
202 KOG2915|consensus 97.7 8.6E-05 1.9E-09 56.0 5.4 90 39-128 94-194 (314)
203 COG0116 Predicted N6-adenine-s 97.6 0.00025 5.4E-09 56.0 7.5 62 35-96 176-278 (381)
204 PRK11760 putative 23S rRNA C24 97.6 8E-05 1.7E-09 58.1 4.6 38 49-87 210-247 (357)
205 KOG1661|consensus 97.6 5.5E-05 1.2E-09 55.1 3.3 60 34-93 64-129 (237)
206 PRK11783 rlmL 23S rRNA m(2)G24 97.6 0.00019 4.2E-09 61.3 6.3 64 34-97 173-281 (702)
207 PRK10611 chemotaxis methyltran 97.6 0.00074 1.6E-08 51.8 8.9 60 31-90 95-165 (287)
208 PF01728 FtsJ: FtsJ-like methy 97.5 0.00022 4.7E-09 50.7 4.7 34 50-83 23-59 (181)
209 PHA01634 hypothetical protein 97.5 0.00028 6E-09 47.6 4.8 47 50-96 28-75 (156)
210 COG3897 Predicted methyltransf 97.4 0.00011 2.3E-09 53.0 2.8 80 36-116 65-152 (218)
211 TIGR03439 methyl_EasF probable 97.4 0.00056 1.2E-08 53.2 7.0 55 37-93 65-125 (319)
212 PLN02823 spermine synthase 97.4 0.0004 8.7E-09 54.4 5.8 44 50-93 103-148 (336)
213 KOG2730|consensus 97.4 0.00022 4.8E-09 52.3 3.9 62 33-94 76-138 (263)
214 PF10672 Methyltrans_SAM: S-ad 97.4 0.0007 1.5E-08 51.9 6.7 63 32-97 108-171 (286)
215 PF01739 CheR: CheR methyltran 97.3 0.00028 6.1E-09 51.2 3.9 41 50-90 31-82 (196)
216 PF11599 AviRa: RRNA methyltra 97.3 0.00035 7.6E-09 51.1 4.3 58 36-93 37-98 (246)
217 COG1352 CheR Methylase of chem 97.3 0.0013 2.8E-08 50.0 7.4 40 51-90 97-147 (268)
218 PF05971 Methyltransf_10: Prot 97.2 0.001 2.2E-08 51.2 6.1 57 37-93 84-147 (299)
219 KOG1663|consensus 97.2 0.002 4.3E-08 47.6 7.2 62 32-93 55-119 (237)
220 COG0286 HsdM Type I restrictio 97.2 0.0012 2.7E-08 54.1 6.7 80 17-97 154-239 (489)
221 KOG2078|consensus 97.2 0.00029 6.3E-09 56.2 2.7 76 17-94 216-293 (495)
222 COG1189 Predicted rRNA methyla 97.1 0.0011 2.4E-08 49.2 5.4 47 42-88 70-118 (245)
223 PRK10742 putative methyltransf 97.1 0.0015 3.3E-08 48.9 6.0 54 40-93 76-131 (250)
224 TIGR00308 TRM1 tRNA(guanine-26 97.1 0.0016 3.4E-08 51.8 6.2 45 52-96 46-93 (374)
225 PF07091 FmrO: Ribosomal RNA m 97.1 0.00077 1.7E-08 50.4 4.2 54 37-92 94-149 (251)
226 TIGR00006 S-adenosyl-methyltra 97.1 0.0025 5.5E-08 49.2 7.0 57 36-92 6-64 (305)
227 COG1565 Uncharacterized conser 97.0 0.0024 5.1E-08 50.2 6.5 53 42-94 69-131 (370)
228 PF03141 Methyltransf_29: Puta 97.0 0.0019 4.2E-08 52.6 6.0 77 36-112 99-188 (506)
229 KOG2940|consensus 97.0 0.0017 3.6E-08 48.3 4.9 70 51-121 73-152 (325)
230 PRK11933 yebU rRNA (cytosine-C 96.9 0.0026 5.6E-08 52.0 6.3 60 34-93 95-159 (470)
231 COG0500 SmtA SAM-dependent met 96.9 0.0042 9.2E-08 40.8 6.2 37 54-91 52-91 (257)
232 PF07757 AdoMet_MTase: Predict 96.9 0.00086 1.9E-08 43.8 2.6 33 50-82 58-90 (112)
233 KOG4058|consensus 96.8 0.0028 6.2E-08 44.0 4.7 56 36-91 58-114 (199)
234 KOG1975|consensus 96.8 0.0016 3.5E-08 50.5 3.8 55 38-92 105-160 (389)
235 KOG0821|consensus 96.8 0.0028 6.1E-08 46.8 4.9 78 13-90 13-91 (326)
236 PF01564 Spermine_synth: Sperm 96.7 0.0032 6.8E-08 47.3 4.8 43 50-92 76-120 (246)
237 PRK00536 speE spermidine synth 96.7 0.0045 9.8E-08 46.9 5.6 55 38-92 57-114 (262)
238 PF07942 N2227: N2227-like pro 96.6 0.0069 1.5E-07 46.0 5.9 77 11-88 12-94 (270)
239 COG0293 FtsJ 23S rRNA methylas 96.4 0.0088 1.9E-07 43.6 5.5 34 49-82 44-80 (205)
240 PF02527 GidB: rRNA small subu 96.3 0.02 4.3E-07 41.1 6.9 59 53-111 51-121 (184)
241 KOG3115|consensus 96.3 0.0032 7E-08 45.9 2.4 43 50-92 60-104 (249)
242 PF04816 DUF633: Family of unk 96.2 0.0079 1.7E-07 44.0 4.0 41 54-94 1-43 (205)
243 KOG1501|consensus 96.1 0.007 1.5E-07 48.9 3.9 40 53-92 69-109 (636)
244 KOG4589|consensus 96.1 0.0089 1.9E-07 43.1 4.0 33 50-82 69-104 (232)
245 PF05891 Methyltransf_PK: AdoM 96.0 0.014 3.1E-07 42.9 4.9 43 50-92 55-98 (218)
246 KOG2920|consensus 95.9 0.0062 1.3E-07 46.3 2.7 38 50-87 116-154 (282)
247 COG0357 GidB Predicted S-adeno 95.9 0.022 4.7E-07 41.9 5.3 90 22-111 32-141 (215)
248 KOG2651|consensus 95.9 0.027 5.9E-07 44.7 5.9 40 51-90 154-194 (476)
249 PF02636 Methyltransf_28: Puta 95.8 0.023 5E-07 42.6 5.4 55 39-93 6-71 (252)
250 KOG2671|consensus 95.7 0.013 2.7E-07 46.0 3.6 72 15-87 174-245 (421)
251 PF01795 Methyltransf_5: MraW 95.6 0.025 5.4E-07 43.9 4.9 58 36-93 6-65 (310)
252 COG2384 Predicted SAM-dependen 95.6 0.031 6.7E-07 41.2 5.1 55 38-94 6-62 (226)
253 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.6 0.043 9.3E-07 42.0 6.1 53 40-92 75-130 (283)
254 PF01269 Fibrillarin: Fibrilla 95.6 0.033 7.1E-07 41.2 5.1 56 36-91 56-121 (229)
255 PLN02232 ubiquinone biosynthes 95.5 0.018 3.8E-07 40.2 3.4 45 76-121 1-59 (160)
256 KOG3045|consensus 95.5 0.039 8.4E-07 41.8 5.2 65 40-112 169-235 (325)
257 COG0144 Sun tRNA and rRNA cyto 95.4 0.057 1.2E-06 42.7 6.5 58 36-93 142-203 (355)
258 PF02086 MethyltransfD12: D12 95.4 0.018 3.9E-07 42.9 3.6 54 37-90 7-60 (260)
259 KOG1227|consensus 95.3 0.018 3.8E-07 44.4 3.1 48 50-97 194-243 (351)
260 COG0863 DNA modification methy 95.0 0.12 2.5E-06 39.3 6.9 59 34-93 207-265 (302)
261 COG4262 Predicted spermidine s 94.9 0.089 1.9E-06 41.8 6.0 42 50-91 289-332 (508)
262 PF11968 DUF3321: Putative met 94.9 0.017 3.8E-07 42.4 2.0 90 36-128 33-126 (219)
263 cd00315 Cyt_C5_DNA_methylase C 94.8 0.052 1.1E-06 41.3 4.6 41 53-93 2-43 (275)
264 COG0275 Predicted S-adenosylme 94.7 0.14 3E-06 39.6 6.4 57 36-92 9-68 (314)
265 PF12147 Methyltransf_20: Puta 94.6 0.16 3.4E-06 39.2 6.5 49 49-97 134-186 (311)
266 PF11899 DUF3419: Protein of u 94.5 0.11 2.3E-06 41.6 5.6 47 44-90 29-75 (380)
267 PF05148 Methyltransf_8: Hypot 94.2 0.081 1.8E-06 38.8 4.1 42 40-82 61-103 (219)
268 KOG1709|consensus 93.5 0.32 6.9E-06 36.1 6.0 63 28-91 80-143 (271)
269 COG1064 AdhP Zn-dependent alco 93.4 0.22 4.7E-06 39.2 5.4 47 45-91 161-209 (339)
270 KOG1331|consensus 93.3 0.13 2.8E-06 39.4 3.9 73 50-125 45-122 (293)
271 COG1889 NOP1 Fibrillarin-like 93.3 0.19 4E-06 36.8 4.5 43 46-88 72-116 (231)
272 KOG0024|consensus 93.2 0.21 4.5E-06 39.0 5.0 49 42-90 161-212 (354)
273 PF00145 DNA_methylase: C-5 cy 93.2 0.18 3.9E-06 38.5 4.8 41 53-93 2-43 (335)
274 PF04672 Methyltransf_19: S-ad 93.2 0.17 3.6E-06 38.5 4.4 60 34-93 51-116 (267)
275 PF04445 SAM_MT: Putative SAM- 93.1 0.19 4.2E-06 37.5 4.5 48 42-89 65-114 (234)
276 PF05050 Methyltransf_21: Meth 93.0 0.16 3.5E-06 34.7 3.8 36 56-91 1-42 (167)
277 cd08283 FDH_like_1 Glutathione 92.3 0.44 9.5E-06 37.7 6.0 47 45-91 179-228 (386)
278 KOG1269|consensus 92.3 0.082 1.8E-06 42.0 1.8 75 50-125 110-197 (364)
279 KOG2798|consensus 92.2 0.2 4.4E-06 39.0 3.7 74 13-87 108-187 (369)
280 PF05206 TRM13: Methyltransfer 92.0 0.45 9.8E-06 36.0 5.4 45 38-82 6-57 (259)
281 COG3129 Predicted SAM-dependen 91.6 0.32 7E-06 36.4 4.0 57 36-92 58-122 (292)
282 PF13578 Methyltransf_24: Meth 90.8 0.12 2.6E-06 33.1 1.1 29 55-83 1-34 (106)
283 KOG3178|consensus 90.3 0.63 1.4E-05 36.6 4.8 42 52-93 179-220 (342)
284 TIGR00675 dcm DNA-methyltransf 90.1 0.51 1.1E-05 36.6 4.2 39 54-92 1-40 (315)
285 PF03721 UDPG_MGDP_dh_N: UDP-g 90.0 0.39 8.5E-06 34.4 3.3 31 60-90 7-41 (185)
286 KOG3924|consensus 89.7 0.48 1E-05 38.0 3.8 56 36-91 178-235 (419)
287 PF04989 CmcI: Cephalosporin h 89.0 0.6 1.3E-05 34.2 3.6 54 29-82 11-70 (206)
288 KOG2793|consensus 88.7 0.61 1.3E-05 35.1 3.6 36 50-85 86-122 (248)
289 PRK09424 pntA NAD(P) transhydr 88.4 1.1 2.3E-05 37.4 5.1 42 49-90 163-206 (509)
290 COG5379 BtaA S-adenosylmethion 88.3 1.3 2.7E-05 34.5 5.0 43 49-91 62-104 (414)
291 KOG1098|consensus 88.1 0.47 1E-05 40.2 2.8 33 50-82 44-79 (780)
292 TIGR03201 dearomat_had 6-hydro 88.0 2.1 4.5E-05 33.3 6.4 46 45-90 161-208 (349)
293 PF02254 TrkA_N: TrkA-N domain 87.9 0.74 1.6E-05 29.7 3.3 33 59-91 4-40 (116)
294 COG1063 Tdh Threonine dehydrog 87.7 1.3 2.9E-05 34.8 5.1 42 50-91 168-212 (350)
295 cd08254 hydroxyacyl_CoA_DH 6-h 87.6 1.9 4.1E-05 32.8 5.9 44 47-90 162-207 (338)
296 PF01234 NNMT_PNMT_TEMT: NNMT/ 87.6 0.38 8.2E-06 36.4 1.9 41 50-90 56-97 (256)
297 PLN02668 indole-3-acetate carb 87.4 0.45 9.8E-06 38.1 2.3 20 51-70 64-83 (386)
298 COG1867 TRM1 N2,N2-dimethylgua 87.2 1.6 3.5E-05 34.7 5.2 45 51-95 53-99 (380)
299 TIGR00497 hsdM type I restrict 87.1 2.2 4.8E-05 35.3 6.3 65 27-92 193-265 (501)
300 COG0270 Dcm Site-specific DNA 86.9 1.4 3E-05 34.4 4.8 44 51-94 3-47 (328)
301 PF03059 NAS: Nicotianamine sy 86.8 2.7 5.9E-05 32.2 6.1 43 51-93 121-167 (276)
302 PF02005 TRM: N2,N2-dimethylgu 86.2 1 2.2E-05 36.0 3.7 49 51-99 50-101 (377)
303 cd05188 MDR Medium chain reduc 86.1 3.4 7.5E-05 30.1 6.4 42 49-90 133-176 (271)
304 PF12692 Methyltransf_17: S-ad 85.1 2.8 6E-05 29.2 4.9 43 36-79 15-59 (160)
305 TIGR02822 adh_fam_2 zinc-bindi 84.9 3.9 8.4E-05 31.6 6.4 47 45-91 160-208 (329)
306 KOG3201|consensus 84.6 0.28 6E-06 34.8 -0.1 53 39-91 18-73 (201)
307 PRK09880 L-idonate 5-dehydroge 83.9 4.6 0.0001 31.3 6.4 47 44-90 163-212 (343)
308 TIGR02818 adh_III_F_hyde S-(hy 83.8 3.4 7.3E-05 32.5 5.7 46 45-90 180-228 (368)
309 COG3510 CmcI Cephalosporin hyd 83.7 3.1 6.7E-05 30.4 4.8 59 29-87 48-112 (237)
310 cd00401 AdoHcyase S-adenosyl-L 82.9 4.8 0.0001 32.6 6.2 53 38-90 188-243 (413)
311 COG5459 Predicted rRNA methyla 82.7 2.5 5.4E-05 33.8 4.4 95 47-148 110-221 (484)
312 PRK10458 DNA cytosine methylas 82.6 5.6 0.00012 32.8 6.6 41 52-92 89-130 (467)
313 PLN03154 putative allyl alcoho 81.5 4.3 9.2E-05 31.7 5.4 45 45-89 153-200 (348)
314 PF00107 ADH_zinc_N: Zinc-bind 81.4 1.4 3.1E-05 28.8 2.4 32 60-91 1-33 (130)
315 KOG2352|consensus 81.2 1.2 2.7E-05 36.5 2.3 44 50-93 295-340 (482)
316 PF03686 UPF0146: Uncharacteri 81.2 6.4 0.00014 26.6 5.4 34 50-83 13-47 (127)
317 PF05575 V_cholerae_RfbT: Vibr 81.0 3.4 7.3E-05 29.6 4.2 55 36-92 67-123 (286)
318 cd08281 liver_ADH_like1 Zinc-d 81.0 5.6 0.00012 31.2 6.0 47 44-90 185-234 (371)
319 cd08255 2-desacetyl-2-hydroxye 80.9 6.8 0.00015 29.0 6.2 46 45-90 92-140 (277)
320 cd08245 CAD Cinnamyl alcohol d 80.8 6.8 0.00015 29.8 6.3 45 46-90 158-204 (330)
321 KOG0022|consensus 80.7 4.6 9.9E-05 31.8 5.1 49 42-90 184-235 (375)
322 TIGR03451 mycoS_dep_FDH mycoth 80.4 4.9 0.00011 31.3 5.4 45 46-90 172-219 (358)
323 cd08237 ribitol-5-phosphate_DH 80.3 4.7 0.0001 31.3 5.3 44 47-90 160-207 (341)
324 TIGR03366 HpnZ_proposed putati 80.1 5.7 0.00012 29.8 5.6 47 44-90 114-163 (280)
325 PF07101 DUF1363: Protein of u 80.0 0.66 1.4E-05 29.7 0.3 18 54-71 6-23 (124)
326 KOG1122|consensus 79.8 2.9 6.3E-05 33.9 3.9 48 45-92 236-286 (460)
327 TIGR00571 dam DNA adenine meth 79.3 3.9 8.5E-05 30.9 4.4 51 36-89 12-62 (266)
328 COG0677 WecC UDP-N-acetyl-D-ma 79.1 2 4.3E-05 34.7 2.8 31 60-90 16-50 (436)
329 PLN02740 Alcohol dehydrogenase 78.9 6.8 0.00015 30.9 5.9 46 45-90 193-241 (381)
330 PF03492 Methyltransf_7: SAM d 78.8 2.8 6.1E-05 32.9 3.6 22 50-71 16-37 (334)
331 cd08232 idonate-5-DH L-idonate 77.9 9.3 0.0002 29.2 6.3 45 46-90 161-208 (339)
332 cd01075 NAD_bind_Leu_Phe_Val_D 77.4 14 0.00031 26.6 6.7 40 50-91 27-70 (200)
333 KOG1596|consensus 77.4 2.1 4.6E-05 32.4 2.3 47 45-91 151-204 (317)
334 COG3392 Adenine-specific DNA m 77.0 1.9 4.1E-05 32.9 2.1 31 50-80 27-57 (330)
335 cd08239 THR_DH_like L-threonin 77.0 8.4 0.00018 29.6 5.8 48 43-90 156-206 (339)
336 PTZ00338 dimethyladenosine tra 76.9 2.2 4.7E-05 32.9 2.4 36 114-149 259-294 (294)
337 PRK06035 3-hydroxyacyl-CoA deh 76.7 5.4 0.00012 30.4 4.6 39 52-90 4-44 (291)
338 COG0338 Dam Site-specific DNA 76.3 1.6 3.4E-05 33.4 1.5 50 36-88 13-62 (274)
339 TIGR02825 B4_12hDH leukotriene 76.2 8.2 0.00018 29.5 5.5 47 44-90 132-181 (325)
340 cd08230 glucose_DH Glucose deh 76.0 9.9 0.00021 29.5 6.0 43 48-90 170-217 (355)
341 KOG2912|consensus 75.8 5.3 0.00011 31.5 4.2 56 38-93 85-147 (419)
342 PRK07417 arogenate dehydrogena 75.8 5.6 0.00012 30.2 4.4 38 53-90 2-41 (279)
343 PRK03659 glutathione-regulated 75.1 3.4 7.4E-05 35.0 3.4 37 52-90 401-441 (601)
344 PRK10669 putative cation:proto 74.8 3.5 7.6E-05 34.5 3.3 37 52-90 418-458 (558)
345 COG1255 Uncharacterized protei 74.5 5.6 0.00012 26.6 3.5 33 51-83 14-47 (129)
346 cd08261 Zn_ADH7 Alcohol dehydr 74.3 14 0.0003 28.3 6.3 46 45-90 154-201 (337)
347 PRK09260 3-hydroxybutyryl-CoA 73.8 7 0.00015 29.7 4.5 38 53-90 3-42 (288)
348 COG1062 AdhC Zn-dependent alco 73.2 10 0.00022 30.1 5.2 51 41-91 176-229 (366)
349 PRK08293 3-hydroxybutyryl-CoA 73.0 7.9 0.00017 29.4 4.6 40 52-91 4-45 (287)
350 PRK07819 3-hydroxybutyryl-CoA 72.9 7.6 0.00017 29.7 4.5 40 52-91 6-47 (286)
351 COG2933 Predicted SAM-dependen 72.8 6.1 0.00013 30.4 3.8 38 50-88 211-248 (358)
352 PRK15057 UDP-glucose 6-dehydro 72.6 4.8 0.0001 32.3 3.5 37 54-90 3-40 (388)
353 cd08295 double_bond_reductase_ 72.5 11 0.00023 29.0 5.3 45 46-90 147-194 (338)
354 KOG2352|consensus 71.4 7.4 0.00016 32.2 4.2 65 53-118 51-126 (482)
355 KOG2360|consensus 71.0 6 0.00013 31.8 3.6 50 46-95 209-261 (413)
356 KOG1253|consensus 71.0 1.1 2.3E-05 37.0 -0.6 54 50-103 109-165 (525)
357 PRK05808 3-hydroxybutyryl-CoA 71.0 8.5 0.00018 29.1 4.4 37 53-89 5-43 (282)
358 cd08294 leukotriene_B4_DH_like 70.5 13 0.00027 28.3 5.3 46 45-90 138-186 (329)
359 cd08300 alcohol_DH_class_III c 70.1 13 0.00028 29.1 5.4 47 44-90 180-229 (368)
360 PF12242 Eno-Rase_NADH_b: NAD( 69.9 6.9 0.00015 24.0 2.9 39 44-82 32-74 (78)
361 PRK07066 3-hydroxybutyryl-CoA 69.9 10 0.00023 29.6 4.7 39 52-90 8-48 (321)
362 PF02737 3HCDH_N: 3-hydroxyacy 69.4 6.9 0.00015 27.7 3.4 38 54-91 2-41 (180)
363 PRK08862 short chain dehydroge 69.3 14 0.0003 27.0 5.1 41 50-90 4-47 (227)
364 COG4798 Predicted methyltransf 68.2 4.4 9.5E-05 29.7 2.1 41 43-83 41-84 (238)
365 PRK03562 glutathione-regulated 68.0 5.5 0.00012 34.0 3.0 38 51-90 400-441 (621)
366 cd05285 sorbitol_DH Sorbitol d 67.9 22 0.00048 27.3 6.2 46 44-89 156-204 (343)
367 KOG0023|consensus 67.9 31 0.00067 27.3 6.8 47 44-90 175-223 (360)
368 PRK15182 Vi polysaccharide bio 67.8 6.8 0.00015 31.8 3.4 36 52-89 7-45 (425)
369 PRK15431 ferrous iron transpor 67.8 6.4 0.00014 24.2 2.5 52 11-63 5-60 (78)
370 PRK12829 short chain dehydroge 67.8 19 0.00041 26.3 5.6 39 49-88 9-51 (264)
371 PRK10904 DNA adenine methylase 67.8 8.6 0.00019 29.2 3.8 50 36-89 15-64 (271)
372 PRK09496 trkA potassium transp 67.7 6.8 0.00015 31.6 3.4 39 51-91 231-273 (453)
373 cd08277 liver_alcohol_DH_like 67.7 17 0.00036 28.5 5.6 46 45-90 179-227 (365)
374 cd08278 benzyl_alcohol_DH Benz 67.5 17 0.00038 28.3 5.6 45 46-90 182-229 (365)
375 KOG2198|consensus 67.4 9.9 0.00022 30.4 4.1 46 46-91 151-202 (375)
376 KOG1209|consensus 67.1 9.5 0.00021 28.5 3.7 39 50-88 6-49 (289)
377 PRK05867 short chain dehydroge 66.6 24 0.00053 25.7 6.0 41 50-90 8-51 (253)
378 COG1004 Ugd Predicted UDP-gluc 66.4 8 0.00017 31.3 3.4 38 54-91 3-42 (414)
379 PLN02780 ketoreductase/ oxidor 66.4 16 0.00035 28.3 5.1 42 50-91 52-96 (320)
380 PRK06130 3-hydroxybutyryl-CoA 66.4 13 0.00028 28.5 4.6 39 52-90 5-45 (311)
381 cd08238 sorbose_phosphate_red 66.3 13 0.00029 29.6 4.8 46 46-91 171-222 (410)
382 cd08241 QOR1 Quinone oxidoredu 65.9 20 0.00043 26.7 5.5 44 46-89 135-181 (323)
383 cd08234 threonine_DH_like L-th 65.6 19 0.00041 27.4 5.4 46 45-90 154-202 (334)
384 COG1743 Adenine-specific DNA m 65.6 8.5 0.00018 33.8 3.6 43 50-92 90-132 (875)
385 TIGR00518 alaDH alanine dehydr 65.0 15 0.00032 29.3 4.7 41 50-90 166-208 (370)
386 cd01065 NAD_bind_Shikimate_DH 64.8 39 0.00085 22.6 6.5 43 49-91 17-62 (155)
387 PLN02827 Alcohol dehydrogenase 64.8 17 0.00036 28.8 5.1 45 46-90 189-236 (378)
388 TIGR00936 ahcY adenosylhomocys 64.0 32 0.00069 27.9 6.5 51 38-88 181-234 (406)
389 cd08285 NADP_ADH NADP(H)-depen 64.0 22 0.00047 27.5 5.5 46 45-90 161-209 (351)
390 cd08236 sugar_DH NAD(P)-depend 62.8 32 0.0007 26.3 6.3 45 45-89 154-201 (343)
391 PRK11730 fadB multifunctional 62.8 14 0.00031 32.1 4.6 40 52-91 314-355 (715)
392 KOG1201|consensus 62.6 18 0.00039 28.1 4.6 43 50-92 37-82 (300)
393 PRK06129 3-hydroxyacyl-CoA deh 61.9 16 0.00036 28.0 4.4 37 53-89 4-42 (308)
394 PRK07454 short chain dehydroge 61.8 39 0.00084 24.3 6.3 38 50-88 5-46 (241)
395 PRK08213 gluconate 5-dehydroge 61.5 33 0.00071 25.1 5.9 39 50-89 11-53 (259)
396 cd05278 FDH_like Formaldehyde 61.2 22 0.00048 27.2 5.1 44 47-90 164-210 (347)
397 PRK09072 short chain dehydroge 61.2 27 0.0006 25.6 5.4 40 50-89 4-46 (263)
398 cd08301 alcohol_DH_plants Plan 61.2 37 0.0008 26.5 6.4 44 45-90 182-230 (369)
399 cd01080 NAD_bind_m-THF_DH_Cycl 60.9 31 0.00067 24.3 5.3 43 41-83 33-79 (168)
400 PRK12826 3-ketoacyl-(acyl-carr 60.9 38 0.00081 24.4 6.1 37 50-87 5-45 (251)
401 PRK05993 short chain dehydroge 60.4 26 0.00057 26.1 5.3 39 51-89 4-45 (277)
402 PRK07814 short chain dehydroge 60.4 33 0.00073 25.2 5.8 39 50-89 9-51 (263)
403 cd08293 PTGR2 Prostaglandin re 60.3 25 0.00054 26.9 5.2 39 52-90 156-198 (345)
404 PLN02545 3-hydroxybutyryl-CoA 60.3 19 0.00042 27.3 4.6 38 52-89 5-44 (295)
405 PLN02256 arogenate dehydrogena 60.0 21 0.00045 27.7 4.6 46 38-83 23-70 (304)
406 PRK07326 short chain dehydroge 59.9 27 0.00059 25.0 5.1 38 50-88 5-46 (237)
407 PRK07523 gluconate 5-dehydroge 59.5 44 0.00095 24.3 6.3 39 50-89 9-51 (255)
408 PRK08339 short chain dehydroge 59.3 32 0.0007 25.5 5.5 41 50-90 7-50 (263)
409 PRK11064 wecC UDP-N-acetyl-D-m 59.2 13 0.00027 30.1 3.5 38 52-89 4-43 (415)
410 COG4017 Uncharacterized protei 58.9 8.7 0.00019 28.1 2.2 47 49-95 43-90 (254)
411 PF03269 DUF268: Caenorhabditi 58.7 14 0.00029 26.3 3.1 97 51-148 2-108 (177)
412 PRK06124 gluconate 5-dehydroge 58.6 37 0.00081 24.7 5.8 39 50-89 10-52 (256)
413 COG4301 Uncharacterized conser 58.4 36 0.00078 26.1 5.5 52 49-100 77-136 (321)
414 PRK07666 fabG 3-ketoacyl-(acyl 58.4 43 0.00092 24.1 6.0 37 50-87 6-46 (239)
415 PF01861 DUF43: Protein of unk 58.3 42 0.00091 25.3 5.8 71 24-95 16-90 (243)
416 PF03514 GRAS: GRAS domain fam 58.2 30 0.00065 27.6 5.4 48 44-91 104-164 (374)
417 PRK11154 fadJ multifunctional 58.2 20 0.00044 31.1 4.8 40 52-91 310-352 (708)
418 PRK08703 short chain dehydroge 57.2 32 0.0007 24.8 5.2 38 50-88 5-46 (239)
419 PRK06720 hypothetical protein; 57.1 41 0.00088 23.5 5.4 39 50-88 15-56 (169)
420 PRK07478 short chain dehydroge 57.1 46 0.001 24.2 6.0 41 50-90 5-48 (254)
421 PRK05866 short chain dehydroge 56.9 50 0.0011 25.0 6.3 41 50-90 39-82 (293)
422 PRK06949 short chain dehydroge 56.8 34 0.00073 24.9 5.3 41 49-90 7-51 (258)
423 TIGR03325 BphB_TodD cis-2,3-di 56.7 35 0.00075 25.1 5.3 40 50-89 4-46 (262)
424 PF02006 DUF137: Protein of un 56.3 39 0.00084 24.1 5.0 29 54-82 92-120 (178)
425 KOG2811|consensus 55.6 18 0.00039 29.1 3.6 31 51-81 183-218 (420)
426 PRK06849 hypothetical protein; 55.4 30 0.00065 27.4 5.0 37 50-86 3-42 (389)
427 PRK08945 putative oxoacyl-(acy 55.2 37 0.0008 24.6 5.2 39 49-88 10-52 (247)
428 PRK00421 murC UDP-N-acetylmura 55.1 20 0.00044 29.2 4.1 35 49-83 5-42 (461)
429 PRK07530 3-hydroxybutyryl-CoA 55.1 28 0.00061 26.4 4.7 38 52-89 5-44 (292)
430 PRK02318 mannitol-1-phosphate 54.9 25 0.00053 28.1 4.5 39 53-91 2-43 (381)
431 PRK09496 trkA potassium transp 54.1 28 0.00062 28.0 4.8 36 53-90 2-41 (453)
432 cd05283 CAD1 Cinnamyl alcohol 53.8 45 0.00098 25.5 5.7 45 45-89 164-210 (337)
433 PRK07677 short chain dehydroge 53.7 43 0.00092 24.4 5.3 40 51-90 1-43 (252)
434 PF03446 NAD_binding_2: NAD bi 53.6 22 0.00048 24.5 3.6 36 54-91 4-43 (163)
435 PF06962 rRNA_methylase: Putat 52.7 13 0.00029 25.5 2.3 22 74-95 1-22 (140)
436 TIGR02441 fa_ox_alpha_mit fatt 52.4 25 0.00055 30.8 4.4 40 52-91 336-377 (737)
437 COG0569 TrkA K+ transport syst 52.4 19 0.00041 26.5 3.2 36 53-88 2-39 (225)
438 PF06564 YhjQ: YhjQ protein; 52.3 13 0.00028 28.0 2.4 17 67-83 25-41 (243)
439 TIGR03026 NDP-sugDHase nucleot 52.3 18 0.0004 29.0 3.4 36 54-89 3-40 (411)
440 PRK12771 putative glutamate sy 51.6 23 0.00051 29.7 4.0 35 48-82 134-170 (564)
441 KOG2539|consensus 51.5 5.5 0.00012 32.8 0.2 74 49-123 199-291 (491)
442 cd08243 quinone_oxidoreductase 51.4 53 0.0011 24.5 5.7 43 47-89 139-184 (320)
443 cd08282 PFDH_like Pseudomonas 51.2 62 0.0014 25.3 6.2 45 45-89 171-218 (375)
444 PRK13771 putative alcohol dehy 50.9 73 0.0016 24.1 6.4 45 45-89 157-204 (334)
445 cd08246 crotonyl_coA_red croto 50.7 36 0.00078 26.8 4.8 44 47-90 190-236 (393)
446 PRK07062 short chain dehydroge 50.7 51 0.0011 24.2 5.4 40 50-89 7-49 (265)
447 cd08296 CAD_like Cinnamyl alco 50.6 60 0.0013 24.8 5.9 43 45-89 158-204 (333)
448 PRK10309 galactitol-1-phosphat 50.3 39 0.00084 26.0 4.8 45 46-90 156-203 (347)
449 PRK07576 short chain dehydroge 50.2 50 0.0011 24.4 5.3 38 50-88 8-49 (264)
450 KOG2782|consensus 49.8 18 0.0004 27.1 2.7 54 36-89 29-84 (303)
451 PRK13394 3-hydroxybutyrate deh 49.5 68 0.0015 23.3 5.9 40 50-90 6-49 (262)
452 PRK07533 enoyl-(acyl carrier p 49.5 53 0.0011 24.2 5.3 35 50-84 9-48 (258)
453 PRK07890 short chain dehydroge 49.2 64 0.0014 23.4 5.7 39 50-89 4-46 (258)
454 PRK06171 sorbitol-6-phosphate 49.2 37 0.0008 24.9 4.4 36 50-85 8-46 (266)
455 TIGR01963 PHB_DH 3-hydroxybuty 48.2 61 0.0013 23.3 5.4 37 52-89 2-42 (255)
456 PRK08217 fabG 3-ketoacyl-(acyl 48.0 79 0.0017 22.7 6.0 39 50-89 4-46 (253)
457 PRK07502 cyclohexadienyl dehyd 47.8 36 0.00079 26.0 4.3 39 52-90 7-49 (307)
458 cd08235 iditol_2_DH_like L-idi 47.7 79 0.0017 24.1 6.2 44 46-89 161-207 (343)
459 TIGR02622 CDP_4_6_dhtase CDP-g 47.6 35 0.00075 26.4 4.2 33 50-83 3-39 (349)
460 PRK06398 aldose dehydrogenase; 47.4 41 0.00088 24.8 4.4 33 50-82 5-40 (258)
461 KOG1099|consensus 47.3 9.8 0.00021 28.7 1.0 32 51-82 42-84 (294)
462 PRK05650 short chain dehydroge 47.3 72 0.0016 23.5 5.8 36 53-88 2-40 (270)
463 PRK08643 acetoin reductase; Va 47.2 74 0.0016 23.1 5.8 39 51-90 2-44 (256)
464 cd08240 6_hydroxyhexanoate_dh_ 47.0 60 0.0013 24.9 5.5 40 50-89 175-217 (350)
465 cd08270 MDR4 Medium chain dehy 46.7 81 0.0017 23.4 6.0 45 46-90 128-175 (305)
466 PRK07067 sorbitol dehydrogenas 46.5 57 0.0012 23.7 5.1 40 50-90 5-48 (257)
467 TIGR01202 bchC 2-desacetyl-2-h 46.5 30 0.00065 26.3 3.7 41 50-90 144-187 (308)
468 PRK12384 sorbitol-6-phosphate 46.3 58 0.0013 23.7 5.1 37 51-88 2-42 (259)
469 PRK06138 short chain dehydroge 46.3 80 0.0017 22.7 5.8 39 50-89 4-46 (252)
470 PRK06196 oxidoreductase; Provi 46.3 65 0.0014 24.5 5.5 38 50-88 25-66 (315)
471 PRK05653 fabG 3-ketoacyl-(acyl 46.1 78 0.0017 22.5 5.7 38 50-88 4-45 (246)
472 PRK08589 short chain dehydroge 46.0 72 0.0016 23.6 5.6 35 50-84 5-42 (272)
473 PRK07774 short chain dehydroge 45.7 64 0.0014 23.2 5.2 38 50-88 5-46 (250)
474 PRK12823 benD 1,6-dihydroxycyc 45.7 67 0.0014 23.4 5.3 34 50-83 7-43 (260)
475 PRK07035 short chain dehydroge 45.6 84 0.0018 22.7 5.9 41 50-90 7-50 (252)
476 PRK12409 D-amino acid dehydrog 45.4 29 0.00063 27.5 3.5 30 53-82 3-34 (410)
477 cd05286 QOR2 Quinone oxidoredu 45.4 69 0.0015 23.6 5.5 44 46-89 132-178 (320)
478 COG0773 MurC UDP-N-acetylmuram 45.0 14 0.0003 30.5 1.6 33 54-86 12-45 (459)
479 PRK11559 garR tartronate semia 44.7 46 0.001 25.2 4.4 37 53-89 4-42 (296)
480 PLN02353 probable UDP-glucose 44.6 47 0.001 27.5 4.7 38 53-90 3-44 (473)
481 PRK05786 fabG 3-ketoacyl-(acyl 44.6 69 0.0015 22.9 5.2 38 50-88 4-45 (238)
482 cd08279 Zn_ADH_class_III Class 44.5 78 0.0017 24.6 5.8 44 46-89 178-224 (363)
483 PRK08993 2-deoxy-D-gluconate 3 44.5 46 0.001 24.3 4.3 33 50-82 9-44 (253)
484 PRK06113 7-alpha-hydroxysteroi 44.4 72 0.0016 23.2 5.3 39 50-88 10-51 (255)
485 cd08299 alcohol_DH_class_I_II_ 44.3 60 0.0013 25.5 5.2 44 44-89 184-232 (373)
486 PLN02253 xanthoxin dehydrogena 44.3 68 0.0015 23.7 5.2 39 50-89 17-59 (280)
487 PRK08267 short chain dehydroge 44.2 65 0.0014 23.5 5.1 39 52-90 2-43 (260)
488 PRK08265 short chain dehydroge 44.2 72 0.0016 23.4 5.3 39 50-88 5-46 (261)
489 TIGR02437 FadB fatty oxidation 44.2 42 0.00092 29.3 4.5 40 52-91 314-355 (714)
490 PRK12770 putative glutamate sy 44.2 41 0.00088 26.2 4.1 42 42-83 9-52 (352)
491 PF01494 FAD_binding_3: FAD bi 44.2 30 0.00066 26.2 3.4 32 53-84 3-36 (356)
492 PRK06153 hypothetical protein; 44.2 33 0.00071 27.8 3.5 32 50-81 175-209 (393)
493 COG0451 WcaG Nucleoside-diphos 44.1 36 0.00078 25.4 3.7 33 54-87 3-39 (314)
494 PRK08268 3-hydroxy-acyl-CoA de 43.9 46 0.001 27.8 4.5 39 52-90 8-48 (507)
495 TIGR03452 mycothione_red mycot 43.9 29 0.00064 28.2 3.4 27 53-79 4-30 (452)
496 PRK12939 short chain dehydroge 43.7 1.1E+02 0.0024 21.9 6.2 39 50-89 6-48 (250)
497 PRK07453 protochlorophyllide o 43.7 1.1E+02 0.0024 23.3 6.5 40 50-89 5-47 (322)
498 PRK08085 gluconate 5-dehydroge 43.7 1E+02 0.0022 22.4 6.0 38 50-88 8-49 (254)
499 PRK06181 short chain dehydroge 43.6 86 0.0019 22.8 5.7 36 52-88 2-41 (263)
500 TIGR02279 PaaC-3OHAcCoADH 3-hy 43.5 47 0.001 27.7 4.5 40 51-90 5-46 (503)
No 1
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.66 E-value=6.3e-16 Score=113.32 Aligned_cols=127 Identities=17% Similarity=0.216 Sum_probs=88.2
Q ss_pred chhhHHHHHHHhhcccccc---cccccccCHHHHHHHHHHcCC---CCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCCh
Q psy1134 9 LNYYVCRTVWKICIQFNKD---FGQHILKNPLIIQSIVDKGAI---RPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82 (149)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~ 82 (149)
.++.....+.+....|-.. +.+....++.....+...... ..+.+|||+|||.|+++.++|+.|+.|+|+|+++
T Consensus 12 id~~e~~~F~~la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se 91 (243)
T COG2227 12 VDYKELDKFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGIDASE 91 (243)
T ss_pred CCHHHHHHHHHHHhhhcCCCCceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCCeeEEecCCh
Confidence 3444555555544444322 333333444444444444432 4788999999999999999999999999999999
Q ss_pred hHHhhhhhhhcccCee-------ecc---CCCCCcchhhHHHHhccccchhHhhccCChhhHHHHHHhhhccC
Q psy1134 83 SCKSYFPSLYYFRNLC-------LQE---VPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHG 145 (149)
Q Consensus 83 ~~i~~a~~~~~~~~~~-------~~~---~~~~~d~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (149)
++|+.|+.+.....+. .+. ..++||+|+|. .+++|.+++ ..|++-++.+-++|
T Consensus 92 ~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cm-EVlEHv~dp---------~~~~~~c~~lvkP~ 154 (243)
T COG2227 92 KPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCM-EVLEHVPDP---------ESFLRACAKLVKPG 154 (243)
T ss_pred HHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEh-hHHHccCCH---------HHHHHHHHHHcCCC
Confidence 9999999775443333 222 22699999999 999999975 44777777776655
No 2
>KOG1270|consensus
Probab=99.55 E-value=2.3e-14 Score=106.09 Aligned_cols=101 Identities=16% Similarity=0.244 Sum_probs=71.3
Q ss_pred HHHHHHHHcCC-CC------CCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhc--------------ccC
Q psy1134 38 IIQSIVDKGAI-RP------TDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYY--------------FRN 96 (149)
Q Consensus 38 ~~~~~~~~l~~-~~------~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~--------------~~~ 96 (149)
+.+.++++.+. .+ |++|||+|||+|.++.+|++.|+.|+|||+++.|++.|+++.. +..
T Consensus 70 i~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~ 149 (282)
T KOG1270|consen 70 IRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYED 149 (282)
T ss_pred HHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhh
Confidence 44555555522 23 3679999999999999999999999999999999999988731 111
Q ss_pred eeeccCCCCCcchhhHHHHhccccchhHhhccCChhhHHHHH-HhhhccCccc
Q psy1134 97 LCLQEVPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLL-ATFNKHGIHF 148 (149)
Q Consensus 97 ~~~~~~~~~~d~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 148 (149)
...+.....||.|+|. .+++|+.++ .+|+.-+ +-++++|..|
T Consensus 150 ~~~E~~~~~fDaVvcs-evleHV~dp---------~~~l~~l~~~lkP~G~lf 192 (282)
T KOG1270|consen 150 TDVEGLTGKFDAVVCS-EVLEHVKDP---------QEFLNCLSALLKPNGRLF 192 (282)
T ss_pred cchhhcccccceeeeH-HHHHHHhCH---------HHHHHHHHHHhCCCCceE
Confidence 1222244679999999 999998865 3444433 3445555544
No 3
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.54 E-value=4.4e-14 Score=107.07 Aligned_cols=81 Identities=35% Similarity=0.498 Sum_probs=74.9
Q ss_pred HHHHHHHhhcccccccccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhh
Q psy1134 13 VCRTVWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 13 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~ 92 (149)
....+..++..+++.+|++|..++.+.+.+++.+...++.+|||||||+|.++..+++++.+|+|+|+|++|++.+++++
T Consensus 5 ~~~~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~ 84 (272)
T PRK00274 5 TRELLERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETF 84 (272)
T ss_pred HHHHHHHcCCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhh
Confidence 56778888999999999999999999999999999888999999999999999999999889999999999999998765
Q ss_pred c
Q psy1134 93 Y 93 (149)
Q Consensus 93 ~ 93 (149)
.
T Consensus 85 ~ 85 (272)
T PRK00274 85 A 85 (272)
T ss_pred c
Confidence 3
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=8e-14 Score=103.23 Aligned_cols=89 Identities=21% Similarity=0.244 Sum_probs=71.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcC--CeEEEEeCChhHHhhhhhhhcc----------cCeeecc-C
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA--KKVIACEIDPSCKSYFPSLYYF----------RNLCLQE-V 102 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~i~~a~~~~~~----------~~~~~~~-~ 102 (149)
..|.+.+.+.+...+|.+|||+|||||.++..+++.. .+|+|+|+|++|++.++++... ++..... .
T Consensus 37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~ 116 (238)
T COG2226 37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFP 116 (238)
T ss_pred HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCC
Confidence 5688888888887789999999999999999999984 7999999999999999988643 2222222 2
Q ss_pred CCCCcchhhHHHHhccccchhHh
Q psy1134 103 PTDFDIKTLIDTVLNEINFADKR 125 (149)
Q Consensus 103 ~~~~d~v~~~~~~l~~~~~~~~~ 125 (149)
..+||.+++. -.|.++++..+.
T Consensus 117 D~sFD~vt~~-fglrnv~d~~~a 138 (238)
T COG2226 117 DNSFDAVTIS-FGLRNVTDIDKA 138 (238)
T ss_pred CCccCEEEee-ehhhcCCCHHHH
Confidence 3799999887 777777765444
No 5
>KOG0820|consensus
Probab=99.51 E-value=1.5e-13 Score=102.24 Aligned_cols=73 Identities=59% Similarity=0.929 Sum_probs=68.2
Q ss_pred HhhcccccccccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhh
Q psy1134 19 KICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~ 91 (149)
.-+..+.+.+|||+..++.+...+....+..+++.|||+|.|||++|..+.+.+++|+++|+++.|+....++
T Consensus 27 ~~~~kfnkd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~kr 99 (315)
T KOG0820|consen 27 SGGSKFNKDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKR 99 (315)
T ss_pred ccCcccccccchhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHH
Confidence 4467889999999999999999999999999999999999999999999999999999999999999998644
No 6
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.49 E-value=8e-14 Score=106.62 Aligned_cols=75 Identities=61% Similarity=0.927 Sum_probs=69.6
Q ss_pred HhhcccccccccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhc
Q psy1134 19 KICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~ 93 (149)
.++..+++.+||+|..++.+..++.+.+...++++|||||||+|.+|..+++.+.+|+++|+|+.|++.+++++.
T Consensus 5 ~~~~~~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~ 79 (294)
T PTZ00338 5 KSGMVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQ 79 (294)
T ss_pred cCCcCcCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHH
Confidence 356788999999999999999999999998889999999999999999999998899999999999999988753
No 7
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.47 E-value=1.8e-13 Score=103.24 Aligned_cols=101 Identities=20% Similarity=0.330 Sum_probs=78.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhhhcccCee----ec--c---CCCCC
Q psy1134 37 LIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSLYYFRNLC----LQ--E---VPTDF 106 (149)
Q Consensus 37 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~----~~--~---~~~~~ 106 (149)
.-.+.+++.+...+|++|||||||.|.+++.++++ +.+|+|+++|+++.+.+++++...++. +. . ..+.|
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 35677788899999999999999999999999999 899999999999999999986544433 21 1 44679
Q ss_pred cchhhHHHHhccccchhHhhccCChhhHHHHHHh-hhccC
Q psy1134 107 DIKTLIDTVLNEINFADKRARTMDLDDFVLLLAT-FNKHG 145 (149)
Q Consensus 107 d~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 145 (149)
|-|+++ ..++|+... ..++|.+.+.. +++.|
T Consensus 139 DrIvSv-gmfEhvg~~-------~~~~ff~~~~~~L~~~G 170 (283)
T COG2230 139 DRIVSV-GMFEHVGKE-------NYDDFFKKVYALLKPGG 170 (283)
T ss_pred ceeeeh-hhHHHhCcc-------cHHHHHHHHHhhcCCCc
Confidence 999999 888887652 34555555444 44444
No 8
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.46 E-value=2.1e-13 Score=102.61 Aligned_cols=71 Identities=37% Similarity=0.580 Sum_probs=66.3
Q ss_pred ccccccccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhc
Q psy1134 23 QFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~ 93 (149)
.+++++||+|..++.+.+++.+.+...++++|||||||+|.++..+++.+.+|+|+|+++.+++.+++++.
T Consensus 2 ~~~k~~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~ 72 (258)
T PRK14896 2 RMNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEI 72 (258)
T ss_pred CCCCcCCccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhc
Confidence 36789999999999999999999988889999999999999999999998899999999999999988754
No 9
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=3.2e-13 Score=100.91 Aligned_cols=78 Identities=38% Similarity=0.592 Sum_probs=70.6
Q ss_pred cccccccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhc-ccCeeecc
Q psy1134 24 FNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYY-FRNLCLQE 101 (149)
Q Consensus 24 ~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~-~~~~~~~~ 101 (149)
+.+++||+|..++..++++.+.+...+++.|||||+|.|.+|..|++++.+|+++|+++.+++.+++.+. +.+..+..
T Consensus 4 ~~K~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~ 82 (259)
T COG0030 4 PNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVIN 82 (259)
T ss_pred CCCCcccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEe
Confidence 4589999999999999999999999899999999999999999999999999999999999999998864 55555543
No 10
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.44 E-value=6.8e-13 Score=102.61 Aligned_cols=73 Identities=11% Similarity=0.088 Sum_probs=58.4
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhccc----Ceeec-----c---CCCCCcchhhHHHHhc
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFR----NLCLQ-----E---VPTDFDIKTLIDTVLN 117 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~----~~~~~-----~---~~~~~d~v~~~~~~l~ 117 (149)
++.+|||||||+|.++..+++.+.+|+|||+|++|++.|+++.... ++... . ....||.|++. .+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~-~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSL-EVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEh-hHHH
Confidence 5679999999999999999988999999999999999998765321 12111 1 23589999998 8999
Q ss_pred cccchh
Q psy1134 118 EINFAD 123 (149)
Q Consensus 118 ~~~~~~ 123 (149)
|++++.
T Consensus 210 Hv~d~~ 215 (322)
T PLN02396 210 HVANPA 215 (322)
T ss_pred hcCCHH
Confidence 998754
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.43 E-value=5.2e-13 Score=100.15 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=65.0
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhh-hcccCeeec--cCCCCCcchhhH
Q psy1134 38 IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSL-YYFRNLCLQ--EVPTDFDIKTLI 112 (149)
Q Consensus 38 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~-~~~~~~~~~--~~~~~~d~v~~~ 112 (149)
....+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++ ..+...+.. .....||.|++.
T Consensus 17 ~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~fD~v~~~ 96 (255)
T PRK14103 17 PFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWKPKPDTDVVVSN 96 (255)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCCCCCCceEEEEe
Confidence 4456778888778899999999999999999988 67999999999999999764 222112221 123689999987
Q ss_pred HHHhccccch
Q psy1134 113 DTVLNEINFA 122 (149)
Q Consensus 113 ~~~l~~~~~~ 122 (149)
.++++++++
T Consensus 97 -~~l~~~~d~ 105 (255)
T PRK14103 97 -AALQWVPEH 105 (255)
T ss_pred -hhhhhCCCH
Confidence 788888754
No 12
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.43 E-value=4.5e-13 Score=97.03 Aligned_cols=79 Identities=15% Similarity=0.227 Sum_probs=59.1
Q ss_pred HHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcccC---eee-------ccCCCCCcchh
Q psy1134 41 SIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRN---LCL-------QEVPTDFDIKT 110 (149)
Q Consensus 41 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~~---~~~-------~~~~~~~d~v~ 110 (149)
.+.+.+...++++|||+|||+|..+..|++++.+|+|+|+|+.|++.++++....+ +.. ...+..||.|+
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~ 100 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFIL 100 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEE
Confidence 34455556677899999999999999999999999999999999999987643221 111 11345799988
Q ss_pred hHHHHhcccc
Q psy1134 111 LIDTVLNEIN 120 (149)
Q Consensus 111 ~~~~~l~~~~ 120 (149)
+. .++++++
T Consensus 101 ~~-~~~~~~~ 109 (197)
T PRK11207 101 ST-VVLMFLE 109 (197)
T ss_pred Ee-cchhhCC
Confidence 77 6666554
No 13
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.42 E-value=5.4e-13 Score=96.48 Aligned_cols=80 Identities=16% Similarity=0.183 Sum_probs=59.6
Q ss_pred HHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcccCeee---------ccCCCCCcchh
Q psy1134 40 QSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNLCL---------QEVPTDFDIKT 110 (149)
Q Consensus 40 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~---------~~~~~~~d~v~ 110 (149)
..+.+.+...++.+|||+|||+|..+..+++++.+|+|+|+|+.|++.++++....++.+ ...+..||.|+
T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~ 99 (195)
T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFIF 99 (195)
T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEEE
Confidence 345566666677899999999999999999999999999999999999877653322211 11235789887
Q ss_pred hHHHHhcccc
Q psy1134 111 LIDTVLNEIN 120 (149)
Q Consensus 111 ~~~~~l~~~~ 120 (149)
+. .++++++
T Consensus 100 ~~-~~~~~~~ 108 (195)
T TIGR00477 100 ST-VVFMFLQ 108 (195)
T ss_pred Ee-cccccCC
Confidence 76 5666554
No 14
>PRK05785 hypothetical protein; Provisional
Probab=99.41 E-value=4.3e-13 Score=99.14 Aligned_cols=89 Identities=12% Similarity=0.044 Sum_probs=63.7
Q ss_pred HHHHHHHHHHcCC--CCCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhhhcc--cCeeecc-CCCCCcch
Q psy1134 36 PLIIQSIVDKGAI--RPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSLYYF--RNLCLQE-VPTDFDIK 109 (149)
Q Consensus 36 ~~~~~~~~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~~~~--~~~~~~~-~~~~~d~v 109 (149)
..|.+.+.+.+.. .++.+|||+|||||.++..+++. +.+|+|+|+|++|++.|+++... .+..... ...+||.|
T Consensus 35 ~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v 114 (226)
T PRK05785 35 VRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVV 114 (226)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEE
Confidence 4455555554421 24779999999999999999988 68999999999999999876322 1222222 34689999
Q ss_pred hhHHHHhccccchhHh
Q psy1134 110 TLIDTVLNEINFADKR 125 (149)
Q Consensus 110 ~~~~~~l~~~~~~~~~ 125 (149)
++. .++++++++.+.
T Consensus 115 ~~~-~~l~~~~d~~~~ 129 (226)
T PRK05785 115 MSS-FALHASDNIEKV 129 (226)
T ss_pred Eec-ChhhccCCHHHH
Confidence 987 567777665443
No 15
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.41 E-value=8.8e-13 Score=98.93 Aligned_cols=71 Identities=41% Similarity=0.597 Sum_probs=66.1
Q ss_pred ccccccccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhc
Q psy1134 23 QFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~ 93 (149)
.+++.+||+|..++.+.+.+++.+...++++|||||||+|.++..+++.+..|+++|+++.+++.+++++.
T Consensus 2 ~~~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 2 RPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred CCCCCCCCccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhC
Confidence 46789999999999999999999998889999999999999999999998899999999999999987753
No 16
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.41 E-value=5.4e-13 Score=101.12 Aligned_cols=102 Identities=20% Similarity=0.312 Sum_probs=68.6
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhhhcccCe----eec-----cCCCC
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSLYYFRNL----CLQ-----EVPTD 105 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~~~~~~~----~~~-----~~~~~ 105 (149)
.+..+.+++.+.+.+|.+|||||||.|.++..++++ +.+|+|+.+|+++.+.++++....++ .+. ..+..
T Consensus 48 ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~ 127 (273)
T PF02353_consen 48 ERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGK 127 (273)
T ss_dssp HHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCC
Confidence 446677888889999999999999999999999999 99999999999999999887654332 221 14469
Q ss_pred CcchhhHHHHhccccchhHhhccCChhhHHHHHHhhhccC
Q psy1134 106 FDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHG 145 (149)
Q Consensus 106 ~d~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (149)
||.|+++ ..++|+... ....|.+.+..+-+.|
T Consensus 128 fD~IvSi-~~~Ehvg~~-------~~~~~f~~~~~~Lkpg 159 (273)
T PF02353_consen 128 FDRIVSI-EMFEHVGRK-------NYPAFFRKISRLLKPG 159 (273)
T ss_dssp -SEEEEE-SEGGGTCGG-------GHHHHHHHHHHHSETT
T ss_pred CCEEEEE-echhhcChh-------HHHHHHHHHHHhcCCC
Confidence 9999999 888888532 2344555555544444
No 17
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.39 E-value=3.8e-13 Score=98.05 Aligned_cols=110 Identities=16% Similarity=0.223 Sum_probs=85.9
Q ss_pred hhHHHHHHHhhcccccc-cccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhh
Q psy1134 11 YYVCRTVWKICIQFNKD-FGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 11 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~ 89 (149)
-|+...++.|...++.. .++--+.-+...+.++......+-+++||+|||||..+..+......++|+|+|++|++.|.
T Consensus 85 aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~ 164 (287)
T COG4976 85 AYVETLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAH 164 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHH
Confidence 67888888887777654 34444555788888888887766789999999999999999999999999999999999998
Q ss_pred hhhcccCee------ec--cCCCCCcchhhHHHHhccccc
Q psy1134 90 SLYYFRNLC------LQ--EVPTDFDIKTLIDTVLNEINF 121 (149)
Q Consensus 90 ~~~~~~~~~------~~--~~~~~~d~v~~~~~~l~~~~~ 121 (149)
++-.|..+. .. ..+.+||+|+.. +|+-++..
T Consensus 165 eKg~YD~L~~Aea~~Fl~~~~~er~DLi~Aa-DVl~YlG~ 203 (287)
T COG4976 165 EKGLYDTLYVAEAVLFLEDLTQERFDLIVAA-DVLPYLGA 203 (287)
T ss_pred hccchHHHHHHHHHHHhhhccCCcccchhhh-hHHHhhcc
Confidence 874433221 11 245799999887 88877764
No 18
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.38 E-value=2.9e-12 Score=96.69 Aligned_cols=105 Identities=14% Similarity=0.130 Sum_probs=78.6
Q ss_pred HHHHHhhcccccccccccccC--HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhh
Q psy1134 15 RTVWKICIQFNKDFGQHILKN--PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 15 ~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~ 91 (149)
.|-.+-...|...+|..+... ......++..+.+.++.+|||||||+|..+..+++. +.+|+|+|+|+.|++.|+++
T Consensus 15 ~y~~~~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~ 94 (263)
T PTZ00098 15 QYSDEGIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLR 94 (263)
T ss_pred ccccccchhHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHH
Confidence 444455677888889887665 345777888888888999999999999999999876 67999999999999999876
Q ss_pred hcc-cCeee-------ccC-CCCCcchhhHHHHhcccc
Q psy1134 92 YYF-RNLCL-------QEV-PTDFDIKTLIDTVLNEIN 120 (149)
Q Consensus 92 ~~~-~~~~~-------~~~-~~~~d~v~~~~~~l~~~~ 120 (149)
... .++.. ... ...||.|++. .++.+++
T Consensus 95 ~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~-~~l~h~~ 131 (263)
T PTZ00098 95 NSDKNKIEFEANDILKKDFPENTFDMIYSR-DAILHLS 131 (263)
T ss_pred cCcCCceEEEECCcccCCCCCCCeEEEEEh-hhHHhCC
Confidence 532 11211 112 3589999877 5555554
No 19
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.38 E-value=5.7e-13 Score=87.50 Aligned_cols=63 Identities=19% Similarity=0.367 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCcchhHHHHHh--cCCeEEEEeCChhHHhhhhhhhc----ccCeee--------ccCCCCCcchhhH
Q psy1134 50 PTDTVLEIGPGTGNMTVKILE--QAKKVIACEIDPSCKSYFPSLYY----FRNLCL--------QEVPTDFDIKTLI 112 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~giD~s~~~i~~a~~~~~----~~~~~~--------~~~~~~~d~v~~~ 112 (149)
|+.+|||+|||+|.++..+++ .+.+|+|+|+|+.+++.|+++.. ..++.. ......||.|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEEC
Confidence 578999999999999999999 58999999999999999998861 122221 1134578988877
No 20
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.38 E-value=2.7e-12 Score=96.78 Aligned_cols=86 Identities=17% Similarity=0.182 Sum_probs=62.6
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc-C--CeEEEEeCChhHHhhhhhhhc------ccCeee-----c-
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-A--KKVIACEIDPSCKSYFPSLYY------FRNLCL-----Q- 100 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~i~~a~~~~~------~~~~~~-----~- 100 (149)
..|.+.+.+.+...++.+|||+|||+|.++..+++. + .+|+|+|+|++|++.|+++.. ..++.. .
T Consensus 59 ~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 59 RIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD 138 (261)
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence 445666666777778889999999999999999886 3 589999999999999976532 112211 1
Q ss_pred -cC-CCCCcchhhHHHHhccccch
Q psy1134 101 -EV-PTDFDIKTLIDTVLNEINFA 122 (149)
Q Consensus 101 -~~-~~~~d~v~~~~~~l~~~~~~ 122 (149)
.+ ..+||.|++. .++++++++
T Consensus 139 lp~~~~sfD~V~~~-~~l~~~~d~ 161 (261)
T PLN02233 139 LPFDDCYFDAITMG-YGLRNVVDR 161 (261)
T ss_pred CCCCCCCEeEEEEe-cccccCCCH
Confidence 12 2579998876 667776643
No 21
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.36 E-value=2.9e-12 Score=95.75 Aligned_cols=87 Identities=15% Similarity=0.077 Sum_probs=65.9
Q ss_pred cCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcc-----cCeeecc-CCCCCc
Q psy1134 34 KNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYF-----RNLCLQE-VPTDFD 107 (149)
Q Consensus 34 ~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~-----~~~~~~~-~~~~~d 107 (149)
.+....+.+++.++..++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.++++... .+..... ....||
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD 105 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFD 105 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEE
Confidence 3466778888888766778999999999999999998899999999999999999877432 2222222 235799
Q ss_pred chhhHHHHhccccc
Q psy1134 108 IKTLIDTVLNEINF 121 (149)
Q Consensus 108 ~v~~~~~~l~~~~~ 121 (149)
.|++. ..++++++
T Consensus 106 ~V~s~-~~l~~~~d 118 (251)
T PRK10258 106 LAWSN-LAVQWCGN 118 (251)
T ss_pred EEEEC-chhhhcCC
Confidence 98876 55665554
No 22
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.36 E-value=1.2e-12 Score=101.01 Aligned_cols=86 Identities=16% Similarity=0.096 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcCC---CCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhccc--------Ceee-----
Q psy1134 36 PLIIQSIVDKGAI---RPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFR--------NLCL----- 99 (149)
Q Consensus 36 ~~~~~~~~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~--------~~~~----- 99 (149)
..+.+.+++.+.. .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.++++.... ....
T Consensus 127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 3455666666643 25779999999999999999999999999999999999998876421 1111
Q ss_pred ccCCCCCcchhhHHHHhccccch
Q psy1134 100 QEVPTDFDIKTLIDTVLNEINFA 122 (149)
Q Consensus 100 ~~~~~~~d~v~~~~~~l~~~~~~ 122 (149)
......||.|++. +++.|++..
T Consensus 207 ~~l~~~fD~Vv~~-~vL~H~p~~ 228 (315)
T PLN02585 207 ESLSGKYDTVTCL-DVLIHYPQD 228 (315)
T ss_pred hhcCCCcCEEEEc-CEEEecCHH
Confidence 1134789999887 777776653
No 23
>PLN02244 tocopherol O-methyltransferase
Probab=99.36 E-value=3.8e-12 Score=99.32 Aligned_cols=85 Identities=12% Similarity=0.184 Sum_probs=64.5
Q ss_pred HHHHHHHHHcCC-----CCCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhhhccc----Ceeec------
Q psy1134 37 LIIQSIVDKGAI-----RPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSLYYFR----NLCLQ------ 100 (149)
Q Consensus 37 ~~~~~~~~~l~~-----~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~~~~~----~~~~~------ 100 (149)
++.+.+++.+.. .++++|||||||+|.++..+++. +.+|+|+|+|+.|++.++++.... ++...
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~ 179 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN 179 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence 466777777766 56789999999999999999987 789999999999999988764321 11111
Q ss_pred -c-CCCCCcchhhHHHHhccccch
Q psy1134 101 -E-VPTDFDIKTLIDTVLNEINFA 122 (149)
Q Consensus 101 -~-~~~~~d~v~~~~~~l~~~~~~ 122 (149)
. ....||.|++. .+++|+++.
T Consensus 180 ~~~~~~~FD~V~s~-~~~~h~~d~ 202 (340)
T PLN02244 180 QPFEDGQFDLVWSM-ESGEHMPDK 202 (340)
T ss_pred CCCCCCCccEEEEC-CchhccCCH
Confidence 1 23689999887 677777653
No 24
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.36 E-value=8.3e-13 Score=98.00 Aligned_cols=88 Identities=20% Similarity=0.265 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhcc---cCeee-------cc
Q psy1134 35 NPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYYF---RNLCL-------QE 101 (149)
Q Consensus 35 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~~---~~~~~-------~~ 101 (149)
+..|++.+.+.+...++.+|||+|||||.++..+++. ..+|+|+|+|++|++.|+++... .++.. ..
T Consensus 32 ~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp 111 (233)
T PF01209_consen 32 DRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP 111 (233)
T ss_dssp -----SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--
T ss_pred HHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc
Confidence 3557777888787788999999999999999999887 36899999999999999987532 12222 11
Q ss_pred -CCCCCcchhhHHHHhccccchh
Q psy1134 102 -VPTDFDIKTLIDTVLNEINFAD 123 (149)
Q Consensus 102 -~~~~~d~v~~~~~~l~~~~~~~ 123 (149)
..++||.|++. -.++++++..
T Consensus 112 ~~d~sfD~v~~~-fglrn~~d~~ 133 (233)
T PF01209_consen 112 FPDNSFDAVTCS-FGLRNFPDRE 133 (233)
T ss_dssp S-TT-EEEEEEE-S-GGG-SSHH
T ss_pred CCCCceeEEEHH-hhHHhhCCHH
Confidence 23689999887 6677777543
No 25
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.36 E-value=3.7e-12 Score=95.56 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=62.1
Q ss_pred HHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhccc----Ceeec---------cCCCCC
Q psy1134 40 QSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFR----NLCLQ---------EVPTDF 106 (149)
Q Consensus 40 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~----~~~~~---------~~~~~~ 106 (149)
..+++.++ .++.+|||+|||+|.++..+++.+.+|+|+|+|++|++.|+++.... ++... .....|
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~f 113 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPV 113 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCC
Confidence 34555555 45679999999999999999999999999999999999998875322 11111 124689
Q ss_pred cchhhHHHHhccccch
Q psy1134 107 DIKTLIDTVLNEINFA 122 (149)
Q Consensus 107 d~v~~~~~~l~~~~~~ 122 (149)
|.|++. .+++++.++
T Consensus 114 D~V~~~-~vl~~~~~~ 128 (255)
T PRK11036 114 DLILFH-AVLEWVADP 128 (255)
T ss_pred CEEEeh-hHHHhhCCH
Confidence 999887 888888655
No 26
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.36 E-value=3.3e-12 Score=93.69 Aligned_cols=84 Identities=20% Similarity=0.218 Sum_probs=63.2
Q ss_pred HHHHHHHHHcC--CCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhccc----Ceeec-----cCCCC
Q psy1134 37 LIIQSIVDKGA--IRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFR----NLCLQ-----EVPTD 105 (149)
Q Consensus 37 ~~~~~~~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~----~~~~~-----~~~~~ 105 (149)
.+...+++.+. ..++++|||+|||+|.++..+++.+.+|+|+|+|++|++.|++++... +.... ..+..
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 119 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGE 119 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCC
Confidence 35556666665 456889999999999999999988889999999999999998875322 22221 12378
Q ss_pred CcchhhHHHHhccccc
Q psy1134 106 FDIKTLIDTVLNEINF 121 (149)
Q Consensus 106 ~d~v~~~~~~l~~~~~ 121 (149)
||.|++. .++.+++.
T Consensus 120 fD~ii~~-~~l~~~~~ 134 (219)
T TIGR02021 120 FDIVVCM-DVLIHYPA 134 (219)
T ss_pred cCEEEEh-hHHHhCCH
Confidence 9999887 66666543
No 27
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.35 E-value=4.1e-12 Score=91.95 Aligned_cols=98 Identities=14% Similarity=0.156 Sum_probs=75.3
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc---ccCeee-cc-CCCCCcchhh
Q psy1134 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY---FRNLCL-QE-VPTDFDIKTL 111 (149)
Q Consensus 39 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~---~~~~~~-~~-~~~~~d~v~~ 111 (149)
...++.+++.....+|.|+|||+|+.|..|+++ ++.|+|+|-|++|++.|+++.. +...++ .| .....|++..
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllfa 98 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLFA 98 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhhh
Confidence 466888899889999999999999999999999 8899999999999999987753 222222 23 4467888776
Q ss_pred HHHHhccccchhHhhccCChhhHHHHHHhhhccC
Q psy1134 112 IDTVLNEINFADKRARTMDLDDFVLLLATFNKHG 145 (149)
Q Consensus 112 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (149)
. .+|+.+|+.. ..|-+++..+.+.|
T Consensus 99 N-AvlqWlpdH~--------~ll~rL~~~L~Pgg 123 (257)
T COG4106 99 N-AVLQWLPDHP--------ELLPRLVSQLAPGG 123 (257)
T ss_pred h-hhhhhccccH--------HHHHHHHHhhCCCc
Confidence 6 8888888643 34556666666655
No 28
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.34 E-value=4.1e-12 Score=95.26 Aligned_cols=85 Identities=15% Similarity=0.179 Sum_probs=64.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhcc-----cCeeeccCCCCCcch
Q psy1134 37 LIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYYF-----RNLCLQEVPTDFDIK 109 (149)
Q Consensus 37 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~~-----~~~~~~~~~~~~d~v 109 (149)
.....++..+...++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++... .+.........||.+
T Consensus 18 ~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 18 RPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred cHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 35667777787778899999999999999999987 57999999999999999877431 111111133589999
Q ss_pred hhHHHHhccccch
Q psy1134 110 TLIDTVLNEINFA 122 (149)
Q Consensus 110 ~~~~~~l~~~~~~ 122 (149)
++. .+++++++.
T Consensus 98 ~~~-~~l~~~~d~ 109 (258)
T PRK01683 98 FAN-ASLQWLPDH 109 (258)
T ss_pred EEc-cChhhCCCH
Confidence 876 777777643
No 29
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.34 E-value=1.9e-12 Score=92.73 Aligned_cols=95 Identities=16% Similarity=0.135 Sum_probs=65.0
Q ss_pred cccccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcc-cCee------
Q psy1134 26 KDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYF-RNLC------ 98 (149)
Q Consensus 26 ~~~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~-~~~~------ 98 (149)
+.+....|...++...+...++.....++||+|||.|.+|..|++++..++++|+|+.+++.|+++... .++.
T Consensus 19 W~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dv 98 (201)
T PF05401_consen 19 WGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADV 98 (201)
T ss_dssp GGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-T
T ss_pred CCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcC
Confidence 344444443334444455567777778999999999999999999999999999999999999987532 3332
Q ss_pred -eccCCCCCcchhhHHHHhccccc
Q psy1134 99 -LQEVPTDFDIKTLIDTVLNEINF 121 (149)
Q Consensus 99 -~~~~~~~~d~v~~~~~~l~~~~~ 121 (149)
..+.+..||+|++. .++.++.+
T Consensus 99 p~~~P~~~FDLIV~S-EVlYYL~~ 121 (201)
T PF05401_consen 99 PEFWPEGRFDLIVLS-EVLYYLDD 121 (201)
T ss_dssp TT---SS-EEEEEEE-S-GGGSSS
T ss_pred CCCCCCCCeeEEEEe-hHhHcCCC
Confidence 22355899999988 88888865
No 30
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.34 E-value=9.3e-12 Score=91.83 Aligned_cols=107 Identities=14% Similarity=0.120 Sum_probs=73.3
Q ss_pred HHHHHHhhccccccccc-ccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhh
Q psy1134 14 CRTVWKICIQFNKDFGQ-HILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 14 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~ 89 (149)
...++.....++...+. .+.....+...+++.+...++++|||+|||+|.++..+++. +.+|+|+|+|+++++.++
T Consensus 8 ~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~ 87 (231)
T TIGR02752 8 HKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGR 87 (231)
T ss_pred HHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 34444444444433221 12345778888999998888899999999999999999876 358999999999999998
Q ss_pred hhhcc---cCeeec-------c-CCCCCcchhhHHHHhccccc
Q psy1134 90 SLYYF---RNLCLQ-------E-VPTDFDIKTLIDTVLNEINF 121 (149)
Q Consensus 90 ~~~~~---~~~~~~-------~-~~~~~d~v~~~~~~l~~~~~ 121 (149)
++... .++... . ....||.|++. .++++.+.
T Consensus 88 ~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~-~~l~~~~~ 129 (231)
T TIGR02752 88 QKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIG-FGLRNVPD 129 (231)
T ss_pred HHHHhcCCCceEEEEechhcCCCCCCCccEEEEe-cccccCCC
Confidence 77532 222211 1 23578888765 55565554
No 31
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.33 E-value=3.1e-13 Score=87.22 Aligned_cols=82 Identities=24% Similarity=0.342 Sum_probs=51.9
Q ss_pred EEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhcccC------eeecc-------CCCCCcchhhHHHHhccc
Q psy1134 55 LEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYYFRN------LCLQE-------VPTDFDIKTLIDTVLNEI 119 (149)
Q Consensus 55 LDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~~~~------~~~~~-------~~~~~d~v~~~~~~l~~~ 119 (149)
||||||+|.++..+.+. ..+|+|+|+|+.|++.+++++.... ..... ....||.|++. .+++++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~-~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVAS-NVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE--TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhh-hhHhhh
Confidence 79999999999999998 7899999999999998887753211 11111 11499999998 999998
Q ss_pred cchhHhhccCChhhHHHHHHhhhccCc
Q psy1134 120 NFADKRARTMDLDDFVLLLATFNKHGI 146 (149)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (149)
+ +...+++-+..+-+.|.
T Consensus 80 ~---------~~~~~l~~~~~~L~pgG 97 (99)
T PF08242_consen 80 E---------DIEAVLRNIYRLLKPGG 97 (99)
T ss_dssp S----------HHHHHHHHTTT-TSS-
T ss_pred h---------hHHHHHHHHHHHcCCCC
Confidence 3 34455666555555553
No 32
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.33 E-value=7.6e-12 Score=91.16 Aligned_cols=70 Identities=20% Similarity=0.142 Sum_probs=54.4
Q ss_pred CCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhccc---Ceeec-c-CCCCCcchhhHHHHhcccc
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYYFR---NLCLQ-E-VPTDFDIKTLIDTVLNEIN 120 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~~~---~~~~~-~-~~~~~d~v~~~~~~l~~~~ 120 (149)
++.+|||+|||+|.++..+++. +.+|+|+|+|++|++.|+++.... ..+.. . ....||.|++. .+++|++
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~-~vL~hl~ 119 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTK-GVLIHIN 119 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEEC-ChhhhCC
Confidence 5678999999999999999887 679999999999999998764211 11111 1 24589999877 8888775
No 33
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.32 E-value=2e-12 Score=89.75 Aligned_cols=73 Identities=22% Similarity=0.398 Sum_probs=53.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHh-c--CCeEEEEeCChhHHhhhhhhhc---ccCeeec-----cCC----CCCcchhhHH
Q psy1134 49 RPTDTVLEIGPGTGNMTVKILE-Q--AKKVIACEIDPSCKSYFPSLYY---FRNLCLQ-----EVP----TDFDIKTLID 113 (149)
Q Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~-~--~~~v~giD~s~~~i~~a~~~~~---~~~~~~~-----~~~----~~~d~v~~~~ 113 (149)
+++.+|||+|||+|.++..+++ . +.+|+|+|+|++|++.|++++. ..++... ..+ ..||.|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~- 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISN- 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEE-
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEc-
Confidence 3578999999999999999994 3 6799999999999999998642 2222221 122 578998877
Q ss_pred HHhccccch
Q psy1134 114 TVLNEINFA 122 (149)
Q Consensus 114 ~~l~~~~~~ 122 (149)
.+++++.++
T Consensus 81 ~~l~~~~~~ 89 (152)
T PF13847_consen 81 GVLHHFPDP 89 (152)
T ss_dssp STGGGTSHH
T ss_pred CchhhccCH
Confidence 666666654
No 34
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.32 E-value=5e-12 Score=96.47 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=55.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcccCe--eec-------cCCCCCcchhhHHHHhccc
Q psy1134 49 RPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNL--CLQ-------EVPTDFDIKTLIDTVLNEI 119 (149)
Q Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~~~--~~~-------~~~~~~d~v~~~~~~l~~~ 119 (149)
.++++|||+|||+|..+..+++.+.+|+|+|+|+.+++.++++....+. ... .....||.|++. .+++++
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~-~vl~~l 197 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILST-VVLMFL 197 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEc-chhhhC
Confidence 4566999999999999999999999999999999999999877543222 111 124689999877 677765
Q ss_pred c
Q psy1134 120 N 120 (149)
Q Consensus 120 ~ 120 (149)
.
T Consensus 198 ~ 198 (287)
T PRK12335 198 N 198 (287)
T ss_pred C
Confidence 4
No 35
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.30 E-value=5.2e-12 Score=87.58 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=60.3
Q ss_pred HHHHHHHHcC-CCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcccCe---eeccCCCCCcchhhHH
Q psy1134 38 IIQSIVDKGA-IRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNL---CLQEVPTDFDIKTLID 113 (149)
Q Consensus 38 ~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~~~---~~~~~~~~~d~v~~~~ 113 (149)
+.+.+....+ ..++++|||||||+|.++..+++.+.+|+|+|+|+.+++. .+...... ........||.|++.
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~i~~~- 85 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--RNVVFDNFDAQDPPFPDGSFDLIICN- 85 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--TTSEEEEEECHTHHCHSSSEEEEEEE-
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--hhhhhhhhhhhhhhccccchhhHhhH-
Confidence 3444444443 4578899999999999999998888999999999999988 22111111 111245799999999
Q ss_pred HHhccccc
Q psy1134 114 TVLNEINF 121 (149)
Q Consensus 114 ~~l~~~~~ 121 (149)
.+++++++
T Consensus 86 ~~l~~~~d 93 (161)
T PF13489_consen 86 DVLEHLPD 93 (161)
T ss_dssp SSGGGSSH
T ss_pred HHHhhccc
Confidence 99999995
No 36
>PRK06202 hypothetical protein; Provisional
Probab=99.28 E-value=1.4e-11 Score=91.14 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=57.7
Q ss_pred HcCCCCCCeEEEEcCCcchhHHHHHhc----C--CeEEEEeCChhHHhhhhhhhcccCeeec-------c-CCCCCcchh
Q psy1134 45 KGAIRPTDTVLEIGPGTGNMTVKILEQ----A--KKVIACEIDPSCKSYFPSLYYFRNLCLQ-------E-VPTDFDIKT 110 (149)
Q Consensus 45 ~l~~~~~~~vLDiGcG~G~~~~~l~~~----~--~~v~giD~s~~~i~~a~~~~~~~~~~~~-------~-~~~~~d~v~ 110 (149)
.+...++.+|||+|||+|.++..|++. + .+|+|+|+|++|++.|+++....+.... . .+.+||.|+
T Consensus 55 ~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 55 ALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred hcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEE
Confidence 344456779999999999999988753 2 4899999999999999887533222111 1 246899999
Q ss_pred hHHHHhccccch
Q psy1134 111 LIDTVLNEINFA 122 (149)
Q Consensus 111 ~~~~~l~~~~~~ 122 (149)
+. .++++++++
T Consensus 135 ~~-~~lhh~~d~ 145 (232)
T PRK06202 135 SN-HFLHHLDDA 145 (232)
T ss_pred EC-CeeecCChH
Confidence 88 788988764
No 37
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.28 E-value=1.9e-11 Score=96.76 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=63.4
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhhhcccCeeec-----cCCCCCcchhh
Q psy1134 38 IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSLYYFRNLCLQ-----EVPTDFDIKTL 111 (149)
Q Consensus 38 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~-----~~~~~~d~v~~ 111 (149)
....+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++......... .....||.|++
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs 234 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVS 234 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEE
Confidence 4556677778788999999999999999999887 78999999999999999987632222211 12467999887
Q ss_pred HHHHhcccc
Q psy1134 112 IDTVLNEIN 120 (149)
Q Consensus 112 ~~~~l~~~~ 120 (149)
. .++++++
T Consensus 235 ~-~~~ehvg 242 (383)
T PRK11705 235 V-GMFEHVG 242 (383)
T ss_pred e-CchhhCC
Confidence 6 6667664
No 38
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.25 E-value=2.6e-11 Score=93.51 Aligned_cols=81 Identities=14% Similarity=0.142 Sum_probs=57.4
Q ss_pred HHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCC-eEEEEeCChhHHhhhhhh---hc-ccCe-----ee--ccCCCCCcc
Q psy1134 41 SIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK-KVIACEIDPSCKSYFPSL---YY-FRNL-----CL--QEVPTDFDI 108 (149)
Q Consensus 41 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~i~~a~~~---~~-~~~~-----~~--~~~~~~~d~ 108 (149)
+++..+...++++|||+|||+|.++..++..+. .|+|+|+|+.|+..++.. .. .... .. ......||.
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~ 191 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDT 191 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCE
Confidence 345556667889999999999999999888854 799999999998764321 11 1111 11 112358999
Q ss_pred hhhHHHHhccccch
Q psy1134 109 KTLIDTVLNEINFA 122 (149)
Q Consensus 109 v~~~~~~l~~~~~~ 122 (149)
|++. .+++|.+++
T Consensus 192 V~s~-gvL~H~~dp 204 (314)
T TIGR00452 192 VFSM-GVLYHRKSP 204 (314)
T ss_pred EEEc-chhhccCCH
Confidence 9988 888887654
No 39
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=99.25 E-value=2.9e-11 Score=91.23 Aligned_cols=78 Identities=38% Similarity=0.571 Sum_probs=68.8
Q ss_pred cccccccccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhc-ccCeee
Q psy1134 22 IQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYY-FRNLCL 99 (149)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~-~~~~~~ 99 (149)
.+.++++||+|..++.+++++++.+...++..|||||+|+|.+|..|++.+.+|+++|+++.+++.+++++. ..+...
T Consensus 2 ~k~kk~~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~v 80 (262)
T PF00398_consen 2 HKPKKSLGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEV 80 (262)
T ss_dssp -SC-CGCTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEE
T ss_pred CCCCCCCCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhccccee
Confidence 467889999999999999999999998889999999999999999999999999999999999999988654 344443
No 40
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.24 E-value=2.2e-11 Score=87.62 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=55.4
Q ss_pred HHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcccCeee---------ccCCCCCcchhhH
Q psy1134 42 IVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNLCL---------QEVPTDFDIKTLI 112 (149)
Q Consensus 42 ~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~---------~~~~~~~d~v~~~ 112 (149)
+.+.++..++.++||+|||.|..+..|+++|..|+++|.|+..++.+++.....++.+ ...+..+|+|++.
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~I~st 101 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDFIVST 101 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEEEEEE
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCEEEEE
Confidence 4556666678899999999999999999999999999999999998876543222221 1234678888764
Q ss_pred HHHhccccc
Q psy1134 113 DTVLNEINF 121 (149)
Q Consensus 113 ~~~l~~~~~ 121 (149)
.++.+++.
T Consensus 102 -~v~~fL~~ 109 (192)
T PF03848_consen 102 -VVFMFLQR 109 (192)
T ss_dssp -SSGGGS-G
T ss_pred -EEeccCCH
Confidence 55555553
No 41
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.23 E-value=2e-11 Score=77.26 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=50.0
Q ss_pred EEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhhhcccCeee-------cc-CCCCCcchhhHHHHhcccc
Q psy1134 55 LEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSLYYFRNLCL-------QE-VPTDFDIKTLIDTVLNEIN 120 (149)
Q Consensus 55 LDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~-------~~-~~~~~d~v~~~~~~l~~~~ 120 (149)
||+|||+|..+..+++. +.+|+|+|+|+++++.++++....+... .. ...+||.|++. .++++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~-~~~~~~~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSN-SVLHHLE 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEE-SHGGGSS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccc-cceeecc
Confidence 89999999999999999 8999999999999999998765433221 11 23799999888 8888883
No 42
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.22 E-value=4.3e-11 Score=97.07 Aligned_cols=98 Identities=18% Similarity=0.275 Sum_probs=69.9
Q ss_pred cccccccccccCHH--HHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhhhccc--Cee
Q psy1134 24 FNKDFGQHILKNPL--IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSLYYFR--NLC 98 (149)
Q Consensus 24 ~~~~~g~~~~~~~~--~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~~~~~--~~~ 98 (149)
+...+|..|...+. -.+.+++.+...++.+|||||||+|..+..+++. +.+|+|+|+|+.+++.|+++.... .+.
T Consensus 238 ~~~f~g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~ 317 (475)
T PLN02336 238 YERVFGEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVE 317 (475)
T ss_pred HHHHhCCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceE
Confidence 33445555544433 3456667777777889999999999999999887 779999999999999998764311 111
Q ss_pred e-------ccC-CCCCcchhhHHHHhccccch
Q psy1134 99 L-------QEV-PTDFDIKTLIDTVLNEINFA 122 (149)
Q Consensus 99 ~-------~~~-~~~~d~v~~~~~~l~~~~~~ 122 (149)
. ... ...||.|++. .+++|++++
T Consensus 318 ~~~~d~~~~~~~~~~fD~I~s~-~~l~h~~d~ 348 (475)
T PLN02336 318 FEVADCTKKTYPDNSFDVIYSR-DTILHIQDK 348 (475)
T ss_pred EEEcCcccCCCCCCCEEEEEEC-CcccccCCH
Confidence 1 112 2579999887 777887754
No 43
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.22 E-value=4.1e-11 Score=92.90 Aligned_cols=82 Identities=18% Similarity=0.165 Sum_probs=58.7
Q ss_pred HHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcC-CeEEEEeCChhHHhhhhhhhc----ccCeeec-------cCCCCCc
Q psy1134 40 QSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA-KKVIACEIDPSCKSYFPSLYY----FRNLCLQ-------EVPTDFD 107 (149)
Q Consensus 40 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~i~~a~~~~~----~~~~~~~-------~~~~~~d 107 (149)
..+...++..++++|||||||+|.++..+++.+ ..|+|+|+|+.++..++.... ..++... .....||
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD 191 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFD 191 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcC
Confidence 345556766678999999999999999999885 469999999999876432211 1112211 1357899
Q ss_pred chhhHHHHhccccch
Q psy1134 108 IKTLIDTVLNEINFA 122 (149)
Q Consensus 108 ~v~~~~~~l~~~~~~ 122 (149)
.|++. .+++|..++
T Consensus 192 ~V~s~-~vl~H~~dp 205 (322)
T PRK15068 192 TVFSM-GVLYHRRSP 205 (322)
T ss_pred EEEEC-ChhhccCCH
Confidence 99987 778876654
No 44
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.22 E-value=3e-11 Score=88.90 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=59.7
Q ss_pred HHHHHHHcCC---CCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhccc----Ceeec-----cCCCCC
Q psy1134 39 IQSIVDKGAI---RPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFR----NLCLQ-----EVPTDF 106 (149)
Q Consensus 39 ~~~~~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~----~~~~~-----~~~~~~ 106 (149)
...+...+.. .++.+|||+|||+|.++..+++.+.+|+|+|+|++|++.|+++.... .+... .....|
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~f 128 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRF 128 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCc
Confidence 3445555432 45779999999999999999998888999999999999998875322 12111 123679
Q ss_pred cchhhHHHHhccccc
Q psy1134 107 DIKTLIDTVLNEINF 121 (149)
Q Consensus 107 d~v~~~~~~l~~~~~ 121 (149)
|.|++. +++++.+.
T Consensus 129 D~v~~~-~~l~~~~~ 142 (230)
T PRK07580 129 DTVVCL-DVLIHYPQ 142 (230)
T ss_pred CEEEEc-chhhcCCH
Confidence 998877 66666543
No 45
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.22 E-value=1.2e-10 Score=87.14 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=53.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhc----CCeEEEEeCChhHHhhhhhhhccc----Ceeecc------CCCCCcchhhHHHH
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ----AKKVIACEIDPSCKSYFPSLYYFR----NLCLQE------VPTDFDIKTLIDTV 115 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~i~~a~~~~~~~----~~~~~~------~~~~~d~v~~~~~~ 115 (149)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|++++... ++.... ....+|.+++. .+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~-~~ 134 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLN-FT 134 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehh-hH
Confidence 6789999999999999988872 579999999999999999876421 222211 12457887766 77
Q ss_pred hccccc
Q psy1134 116 LNEINF 121 (149)
Q Consensus 116 l~~~~~ 121 (149)
+++++.
T Consensus 135 l~~l~~ 140 (247)
T PRK15451 135 LQFLEP 140 (247)
T ss_pred HHhCCH
Confidence 777764
No 46
>KOG1541|consensus
Probab=99.21 E-value=1.6e-11 Score=89.22 Aligned_cols=97 Identities=19% Similarity=0.146 Sum_probs=70.8
Q ss_pred hhHHHHHHHhhcccccccccccccCHHHHHHHHHHcCCCC--CCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhh
Q psy1134 11 YYVCRTVWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRP--TDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYF 88 (149)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a 88 (149)
||.+.-...|..+-+... .+.++..+.++.+.... +.-|||||||+|..+..|.+.|..++|+|+|+.|++.|
T Consensus 14 fYnd~eA~kYt~nsri~~-----IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a 88 (270)
T KOG1541|consen 14 FYNDTEAPKYTQNSRIVL-----IQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQA 88 (270)
T ss_pred eechhhhhhccccceeee-----ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHH
Confidence 667766666666555433 33556677777665543 66799999999999999999999999999999999999
Q ss_pred hhhhcccCeeec-------cCCCCCcchhhH
Q psy1134 89 PSLYYFRNLCLQ-------EVPTDFDIKTLI 112 (149)
Q Consensus 89 ~~~~~~~~~~~~-------~~~~~~d~v~~~ 112 (149)
.++-...++... ..+..||.++++
T Consensus 89 ~~~e~egdlil~DMG~GlpfrpGtFDg~ISI 119 (270)
T KOG1541|consen 89 VERELEGDLILCDMGEGLPFRPGTFDGVISI 119 (270)
T ss_pred HHhhhhcCeeeeecCCCCCCCCCccceEEEe
Confidence 864322333222 145799999886
No 47
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.18 E-value=4.3e-11 Score=85.55 Aligned_cols=82 Identities=21% Similarity=0.232 Sum_probs=62.0
Q ss_pred HHHHHcCCCCCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhhh-cccCeeec----c-CCCCCcchhhHH
Q psy1134 41 SIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSLY-YFRNLCLQ----E-VPTDFDIKTLID 113 (149)
Q Consensus 41 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~~-~~~~~~~~----~-~~~~~d~v~~~~ 113 (149)
.+.++++ ++.+|||+|||.|.+...|.+. +.+.+|+|++++.+..|.++- ..-+.+.. . ...+||.|++.
T Consensus 6 ~I~~~I~--pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIls- 82 (193)
T PF07021_consen 6 IIAEWIE--PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILS- 82 (193)
T ss_pred HHHHHcC--CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehH-
Confidence 4555666 6889999999999999999886 889999999999999887662 22222221 1 34799999877
Q ss_pred HHhccccchhHh
Q psy1134 114 TVLNEINFADKR 125 (149)
Q Consensus 114 ~~l~~~~~~~~~ 125 (149)
.+|.++..+.+.
T Consensus 83 qtLQ~~~~P~~v 94 (193)
T PF07021_consen 83 QTLQAVRRPDEV 94 (193)
T ss_pred hHHHhHhHHHHH
Confidence 888877766554
No 48
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.18 E-value=4.9e-11 Score=84.95 Aligned_cols=69 Identities=25% Similarity=0.338 Sum_probs=51.8
Q ss_pred HHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcccCeee--c------cCCCCCcchhhH
Q psy1134 44 DKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNLCL--Q------EVPTDFDIKTLI 112 (149)
Q Consensus 44 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~--~------~~~~~~d~v~~~ 112 (149)
..+...++++|||+|||+|.++..+++.+.+|+|+|+|+++++.++++....+... . ....+||.|++.
T Consensus 13 ~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n 89 (179)
T TIGR00537 13 ANLRELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFN 89 (179)
T ss_pred HHHHhcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEEC
Confidence 34444567899999999999999999987799999999999999998754322111 1 123578888764
No 49
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.18 E-value=2.6e-11 Score=78.58 Aligned_cols=68 Identities=19% Similarity=0.318 Sum_probs=48.3
Q ss_pred EEEEcCCcchhHHHHHhcC-----CeEEEEeCChhHHhhhhhhhcccC--eeecc--------CCCCCcchhhHHHHhcc
Q psy1134 54 VLEIGPGTGNMTVKILEQA-----KKVIACEIDPSCKSYFPSLYYFRN--LCLQE--------VPTDFDIKTLIDTVLNE 118 (149)
Q Consensus 54 vLDiGcG~G~~~~~l~~~~-----~~v~giD~s~~~i~~a~~~~~~~~--~~~~~--------~~~~~d~v~~~~~~l~~ 118 (149)
|||+|||+|..+..+++.. .+++|+|+|++|++.++++....+ ..... ....||.|++...++++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999873 799999999999999998864222 11111 23588999886566777
Q ss_pred ccc
Q psy1134 119 INF 121 (149)
Q Consensus 119 ~~~ 121 (149)
+..
T Consensus 81 ~~~ 83 (101)
T PF13649_consen 81 LSP 83 (101)
T ss_dssp SSH
T ss_pred CCH
Confidence 553
No 50
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.16 E-value=1.3e-10 Score=83.58 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhcccCe---eecc-------CCCCCcchhhH
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYYFRNL---CLQE-------VPTDFDIKTLI 112 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~~~~~---~~~~-------~~~~~d~v~~~ 112 (149)
++.+|||+|||+|..+..+++. +.+|+|+|+|++|++.|+++....+. .... ...+||.|++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~ 119 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSR 119 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEc
Confidence 4789999999999999999874 67999999999999999887533222 1111 23478888764
No 51
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1e-10 Score=84.73 Aligned_cols=92 Identities=20% Similarity=0.257 Sum_probs=73.1
Q ss_pred cccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcc---cCeeec----
Q psy1134 28 FGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYF---RNLCLQ---- 100 (149)
Q Consensus 28 ~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~---~~~~~~---- 100 (149)
.|+.. ..+.+..+|+..+.+.++++|||||||+|+.+..+++...+|+++|..++..+.|++|+.. .+....
T Consensus 51 ~gqti-s~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG 129 (209)
T COG2518 51 CGQTI-SAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDG 129 (209)
T ss_pred CCcee-cCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc
Confidence 45554 5688999999999999999999999999999999999988999999999999999998643 333222
Q ss_pred ---c-CCCCCcchhhHHHHhccccc
Q psy1134 101 ---E-VPTDFDIKTLIDTVLNEINF 121 (149)
Q Consensus 101 ---~-~~~~~d~v~~~~~~l~~~~~ 121 (149)
| ...+||.|++. .....+|.
T Consensus 130 ~~G~~~~aPyD~I~Vt-aaa~~vP~ 153 (209)
T COG2518 130 SKGWPEEAPYDRIIVT-AAAPEVPE 153 (209)
T ss_pred ccCCCCCCCcCEEEEe-eccCCCCH
Confidence 2 22699998775 44444543
No 52
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.6e-10 Score=88.06 Aligned_cols=88 Identities=19% Similarity=0.249 Sum_probs=67.3
Q ss_pred ccccccccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCC-eEEEEeCChhHHhhhhhhhcccCeee--
Q psy1134 23 QFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK-KVIACEIDPSCKSYFPSLYYFRNLCL-- 99 (149)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~i~~a~~~~~~~~~~~-- 99 (149)
.+...+|...+-...++-..++.... ++++|||+|||+|++++..++.|+ +|+|+|++|-+++.++.|.+..+...
T Consensus 136 DPGlAFGTG~HpTT~lcL~~Le~~~~-~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~ 214 (300)
T COG2264 136 DPGLAFGTGTHPTTSLCLEALEKLLK-KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLV 214 (300)
T ss_pred ccccccCCCCChhHHHHHHHHHHhhc-CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhh
Confidence 44456777766666676666666653 789999999999999999999965 69999999999999999987655551
Q ss_pred --cc-------CCCCCcchhh
Q psy1134 100 --QE-------VPTDFDIKTL 111 (149)
Q Consensus 100 --~~-------~~~~~d~v~~ 111 (149)
.. ...+||.|++
T Consensus 215 ~~~~~~~~~~~~~~~~DvIVA 235 (300)
T COG2264 215 QAKGFLLLEVPENGPFDVIVA 235 (300)
T ss_pred hcccccchhhcccCcccEEEe
Confidence 11 1148888864
No 53
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.13 E-value=7.7e-10 Score=81.73 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=63.6
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcccC--eeec-----c----CCC
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRN--LCLQ-----E----VPT 104 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~~--~~~~-----~----~~~ 104 (149)
+..+..+...+...++.+|||||||+|.++..+++.+.+|+++|+++.+++.++++..... .... . ...
T Consensus 34 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (233)
T PRK05134 34 PLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPG 113 (233)
T ss_pred HHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCC
Confidence 4455666666666678899999999999999999888899999999999999987643211 1111 1 236
Q ss_pred CCcchhhHHHHhccccch
Q psy1134 105 DFDIKTLIDTVLNEINFA 122 (149)
Q Consensus 105 ~~d~v~~~~~~l~~~~~~ 122 (149)
.||.|++. .++++.+.+
T Consensus 114 ~fD~Ii~~-~~l~~~~~~ 130 (233)
T PRK05134 114 QFDVVTCM-EMLEHVPDP 130 (233)
T ss_pred CccEEEEh-hHhhccCCH
Confidence 89998876 677766543
No 54
>PRK08317 hypothetical protein; Provisional
Probab=99.13 E-value=3.5e-10 Score=83.02 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhc--ccCeee-----c---cC
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYY--FRNLCL-----Q---EV 102 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~--~~~~~~-----~---~~ 102 (149)
..+...++..+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.++++.. ..+... . ..
T Consensus 5 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCC
Confidence 456677888888888899999999999999999886 3689999999999999987621 111211 1 12
Q ss_pred CCCCcchhhHHHHhccccch
Q psy1134 103 PTDFDIKTLIDTVLNEINFA 122 (149)
Q Consensus 103 ~~~~d~v~~~~~~l~~~~~~ 122 (149)
...||.|++. .++++++++
T Consensus 85 ~~~~D~v~~~-~~~~~~~~~ 103 (241)
T PRK08317 85 DGSFDAVRSD-RVLQHLEDP 103 (241)
T ss_pred CCCceEEEEe-chhhccCCH
Confidence 3578998876 777776654
No 55
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.12 E-value=2.9e-10 Score=75.53 Aligned_cols=57 Identities=23% Similarity=0.349 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhh
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~ 92 (149)
+.+...+++.+...++++|||+|||+|.++..+++. +.+|+++|+|+.+++.++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~ 63 (124)
T TIGR02469 5 REVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNA 63 (124)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHH
Confidence 556677888888777889999999999999999987 468999999999999998764
No 56
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.11 E-value=1.8e-10 Score=81.37 Aligned_cols=55 Identities=45% Similarity=0.722 Sum_probs=49.5
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhc
Q psy1134 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 39 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~ 93 (149)
.+.+++.+...++.+|||+|||+|.++..+++++.+|+++|+|+.+++.+++++.
T Consensus 2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~ 56 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFA 56 (169)
T ss_pred HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhc
Confidence 4567788888888899999999999999999998899999999999999988753
No 57
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.10 E-value=3e-10 Score=83.27 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=53.1
Q ss_pred cCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCC---eEEEEeCChhHHhhhhhhhc
Q psy1134 34 KNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK---KVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 34 ~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~i~~a~~~~~ 93 (149)
..+.....+.+.+.+.++.+|||||||+|.++..+++... +|+++|+++++++.|++++.
T Consensus 61 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~ 123 (215)
T TIGR00080 61 SAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLR 123 (215)
T ss_pred chHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 4577888999999988999999999999999999998743 59999999999999998764
No 58
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.10 E-value=1.8e-10 Score=88.16 Aligned_cols=89 Identities=21% Similarity=0.290 Sum_probs=62.8
Q ss_pred cccccccccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCC-eEEEEeCChhHHhhhhhhhcccCeee-
Q psy1134 22 IQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK-KVIACEIDPSCKSYFPSLYYFRNLCL- 99 (149)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~i~~a~~~~~~~~~~~- 99 (149)
..+...||-..+-.++.+-.++.... .++++|||+|||||++++..++.|+ +|+|+|++|.+++.|++|....++..
T Consensus 134 idPg~AFGTG~H~TT~lcl~~l~~~~-~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~ 212 (295)
T PF06325_consen 134 IDPGMAFGTGHHPTTRLCLELLEKYV-KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDR 212 (295)
T ss_dssp ESTTSSS-SSHCHHHHHHHHHHHHHS-STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTC
T ss_pred ECCCCcccCCCCHHHHHHHHHHHHhc-cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCee
Confidence 34556677766555666666666664 4678999999999999999998864 79999999999999999875433221
Q ss_pred ---cc----CCCCCcchhh
Q psy1134 100 ---QE----VPTDFDIKTL 111 (149)
Q Consensus 100 ---~~----~~~~~d~v~~ 111 (149)
.. ....||+|+.
T Consensus 213 ~~v~~~~~~~~~~~dlvvA 231 (295)
T PF06325_consen 213 IEVSLSEDLVEGKFDLVVA 231 (295)
T ss_dssp EEESCTSCTCCS-EEEEEE
T ss_pred EEEEEecccccccCCEEEE
Confidence 11 2367888754
No 59
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.10 E-value=5.8e-10 Score=86.88 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=62.7
Q ss_pred HHHHHHHHHHcCC-CCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhcccCeeec-------c-CCC
Q psy1134 36 PLIIQSIVDKGAI-RPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYYFRNLCLQ-------E-VPT 104 (149)
Q Consensus 36 ~~~~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~-------~-~~~ 104 (149)
+.++..+++.... .++.+|||+|||+|.++..+++. +.+|+++|+|++|++.|+++....++... . ...
T Consensus 98 e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~ 177 (340)
T PLN02490 98 EDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTD 177 (340)
T ss_pred HHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCC
Confidence 5566666666654 35679999999999999998876 46899999999999999886543332221 1 235
Q ss_pred CCcchhhHHHHhccccch
Q psy1134 105 DFDIKTLIDTVLNEINFA 122 (149)
Q Consensus 105 ~~d~v~~~~~~l~~~~~~ 122 (149)
.||.+++. .++++.+++
T Consensus 178 sFDvVIs~-~~L~~~~d~ 194 (340)
T PLN02490 178 YADRYVSA-GSIEYWPDP 194 (340)
T ss_pred ceeEEEEc-ChhhhCCCH
Confidence 79988876 777776654
No 60
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.09 E-value=4.3e-10 Score=81.94 Aligned_cols=86 Identities=20% Similarity=0.218 Sum_probs=64.1
Q ss_pred cCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhcccC----eeecc-----
Q psy1134 34 KNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYYFRN----LCLQE----- 101 (149)
Q Consensus 34 ~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~~~~----~~~~~----- 101 (149)
..+.+...+.+.+...++.+|||+|||+|..+..+++. +.+|+++|+++++++.|++++...+ .....
T Consensus 56 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~ 135 (205)
T PRK13944 56 SAPHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKR 135 (205)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCccc
Confidence 45778888889998888899999999999999998876 3689999999999999988753221 22111
Q ss_pred ---CCCCCcchhhHHHHhcccc
Q psy1134 102 ---VPTDFDIKTLIDTVLNEIN 120 (149)
Q Consensus 102 ---~~~~~d~v~~~~~~l~~~~ 120 (149)
....||.|++. ..+.+++
T Consensus 136 ~~~~~~~fD~Ii~~-~~~~~~~ 156 (205)
T PRK13944 136 GLEKHAPFDAIIVT-AAASTIP 156 (205)
T ss_pred CCccCCCccEEEEc-cCcchhh
Confidence 12478888765 4444433
No 61
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.09 E-value=7.3e-10 Score=81.25 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=41.5
Q ss_pred HHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhh
Q psy1134 42 IVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 42 ~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
.+..+...++.+|||+|||.|..+..|+++|..|+|+|+|+.+++.+.+
T Consensus 26 ~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~ 74 (213)
T TIGR03840 26 HWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFA 74 (213)
T ss_pred HHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHH
Confidence 4444433467799999999999999999999999999999999998643
No 62
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.08 E-value=4.7e-10 Score=82.37 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=52.7
Q ss_pred CeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhcccC----eee-------ccCCCCCcchhhHHHHhcc
Q psy1134 52 DTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYYFRN----LCL-------QEVPTDFDIKTLIDTVLNE 118 (149)
Q Consensus 52 ~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~~~~----~~~-------~~~~~~~d~v~~~~~~l~~ 118 (149)
++|||||||+|.++..+++. +.+|+|+|+|+++++.++++....+ +.. ...+..||.|++. .++++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~-~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGF-EVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehH-HHHHh
Confidence 47999999999999999887 4689999999999999988753211 111 1134679999877 77787
Q ss_pred ccc
Q psy1134 119 INF 121 (149)
Q Consensus 119 ~~~ 121 (149)
+++
T Consensus 80 ~~~ 82 (224)
T smart00828 80 IKD 82 (224)
T ss_pred CCC
Confidence 754
No 63
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.08 E-value=3e-10 Score=81.94 Aligned_cols=82 Identities=20% Similarity=0.182 Sum_probs=58.7
Q ss_pred HHHHHcCCCCCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhh-hcccCeeec-----cCCCCCcchhhHH
Q psy1134 41 SIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSL-YYFRNLCLQ-----EVPTDFDIKTLID 113 (149)
Q Consensus 41 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~-~~~~~~~~~-----~~~~~~d~v~~~~ 113 (149)
.+.+.++ ++++|||+|||+|.++..+++. +..++|+|+|+++++.++++ ......+.. ....+||.|++.
T Consensus 6 ~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~- 82 (194)
T TIGR02081 6 SILNLIP--PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILS- 82 (194)
T ss_pred HHHHhcC--CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEh-
Confidence 3444554 5679999999999999999876 56889999999999998653 222111211 123579999887
Q ss_pred HHhccccchhHh
Q psy1134 114 TVLNEINFADKR 125 (149)
Q Consensus 114 ~~l~~~~~~~~~ 125 (149)
.++++++++...
T Consensus 83 ~~l~~~~d~~~~ 94 (194)
T TIGR02081 83 QTLQATRNPEEI 94 (194)
T ss_pred hHhHcCcCHHHH
Confidence 788888765543
No 64
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.08 E-value=4.9e-10 Score=82.06 Aligned_cols=84 Identities=20% Similarity=0.223 Sum_probs=65.2
Q ss_pred cccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhcc---cCeeecc
Q psy1134 28 FGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYYF---RNLCLQE 101 (149)
Q Consensus 28 ~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~~---~~~~~~~ 101 (149)
.|+.. ..+.....++..+.+.++.+|||||||+|.++..+++. +.+|+++|+++++++.+++++.. .+.....
T Consensus 55 ~g~~~-~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~ 133 (212)
T PRK13942 55 YGQTI-SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIV 133 (212)
T ss_pred CCCEe-CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE
Confidence 34443 56889999999999889999999999999999999877 36999999999999999987642 2222221
Q ss_pred --------CCCCCcchhhH
Q psy1134 102 --------VPTDFDIKTLI 112 (149)
Q Consensus 102 --------~~~~~d~v~~~ 112 (149)
....||.|++.
T Consensus 134 gd~~~~~~~~~~fD~I~~~ 152 (212)
T PRK13942 134 GDGTLGYEENAPYDRIYVT 152 (212)
T ss_pred CCcccCCCcCCCcCEEEEC
Confidence 12578888764
No 65
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.07 E-value=5.8e-10 Score=79.95 Aligned_cols=78 Identities=17% Similarity=0.240 Sum_probs=59.9
Q ss_pred cCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhcc---cCeeecc------C
Q psy1134 34 KNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYYF---RNLCLQE------V 102 (149)
Q Consensus 34 ~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~~---~~~~~~~------~ 102 (149)
..+..+..++..+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++... .++.... .
T Consensus 15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~ 94 (187)
T PRK08287 15 TKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIEL 94 (187)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhc
Confidence 44667777788888878899999999999999999887 46999999999999999887532 2222221 2
Q ss_pred CCCCcchhh
Q psy1134 103 PTDFDIKTL 111 (149)
Q Consensus 103 ~~~~d~v~~ 111 (149)
...||.+++
T Consensus 95 ~~~~D~v~~ 103 (187)
T PRK08287 95 PGKADAIFI 103 (187)
T ss_pred CcCCCEEEE
Confidence 346787765
No 66
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.06 E-value=1.6e-10 Score=81.85 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=53.3
Q ss_pred HHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCC--eEEEEeCChhHHhhhhhhhcccCee---ecc-------CCCCCcc
Q psy1134 41 SIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK--KVIACEIDPSCKSYFPSLYYFRNLC---LQE-------VPTDFDI 108 (149)
Q Consensus 41 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~i~~a~~~~~~~~~~---~~~-------~~~~~d~ 108 (149)
.+++.+...++++|||+|||+|.++..+++.+. +|+++|+|+.+++.+++++...+.. ..+ ....||.
T Consensus 22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~ 101 (170)
T PF05175_consen 22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDL 101 (170)
T ss_dssp HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEE
T ss_pred HHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeE
Confidence 344444444778999999999999999999844 5999999999999999987544332 222 1257888
Q ss_pred hhhH
Q psy1134 109 KTLI 112 (149)
Q Consensus 109 v~~~ 112 (149)
|++.
T Consensus 102 Iv~N 105 (170)
T PF05175_consen 102 IVSN 105 (170)
T ss_dssp EEE-
T ss_pred EEEc
Confidence 7765
No 67
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.05 E-value=7.1e-10 Score=89.98 Aligned_cols=86 Identities=20% Similarity=0.154 Sum_probs=63.7
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhc-ccCee-----e--cc---CCC
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYY-FRNLC-----L--QE---VPT 104 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~-~~~~~-----~--~~---~~~ 104 (149)
...+..+++.++..++++|||+|||+|.++..+++.+.+|+|+|+|++|++.+++... ..++. . .. ...
T Consensus 23 ~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 23 KEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred chhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 3445677788877677899999999999999999998899999999999998764321 11111 1 11 235
Q ss_pred CCcchhhHHHHhccccch
Q psy1134 105 DFDIKTLIDTVLNEINFA 122 (149)
Q Consensus 105 ~~d~v~~~~~~l~~~~~~ 122 (149)
.||.|++. .+++++++.
T Consensus 103 ~fD~I~~~-~~l~~l~~~ 119 (475)
T PLN02336 103 SVDLIFSN-WLLMYLSDK 119 (475)
T ss_pred CEEEEehh-hhHHhCCHH
Confidence 78999876 777777653
No 68
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.05 E-value=6.7e-10 Score=80.23 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=51.9
Q ss_pred cCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc
Q psy1134 34 KNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 34 ~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~ 93 (149)
........+.+.+...++.+|||+|||+|.++..+++. +.+|+++|+|+++++.++++..
T Consensus 24 t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~ 85 (196)
T PRK07402 24 TKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCD 85 (196)
T ss_pred CHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 44666777888888888899999999999999999865 5799999999999999998764
No 69
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.05 E-value=1.4e-09 Score=80.80 Aligned_cols=71 Identities=13% Similarity=0.064 Sum_probs=51.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhc----CCeEEEEeCChhHHhhhhhhhccc----Ceeecc------CCCCCcchhhHHHH
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ----AKKVIACEIDPSCKSYFPSLYYFR----NLCLQE------VPTDFDIKTLIDTV 115 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~i~~a~~~~~~~----~~~~~~------~~~~~d~v~~~~~~ 115 (149)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|++++... +..... ....+|.+++. .+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~-~~ 131 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILN-FT 131 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeee-cc
Confidence 6679999999999999999874 568999999999999998875321 122211 12356766654 56
Q ss_pred hccccc
Q psy1134 116 LNEINF 121 (149)
Q Consensus 116 l~~~~~ 121 (149)
+++++.
T Consensus 132 l~~~~~ 137 (239)
T TIGR00740 132 LQFLPP 137 (239)
T ss_pred hhhCCH
Confidence 666654
No 70
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.04 E-value=5.6e-10 Score=83.64 Aligned_cols=63 Identities=22% Similarity=0.268 Sum_probs=48.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC-eEEEEeCChhHHhhhhhhhcccCee-ecc-CC--CCCcchhh
Q psy1134 49 RPTDTVLEIGPGTGNMTVKILEQAK-KVIACEIDPSCKSYFPSLYYFRNLC-LQE-VP--TDFDIKTL 111 (149)
Q Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~i~~a~~~~~~~~~~-~~~-~~--~~~d~v~~ 111 (149)
.++++|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++....+.. ... .. ..||.|++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vva 185 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVA 185 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEE
Confidence 4688999999999999998887755 5999999999999999987654442 111 11 26888764
No 71
>PHA03412 putative methyltransferase; Provisional
Probab=99.03 E-value=5.7e-10 Score=82.49 Aligned_cols=87 Identities=13% Similarity=0.209 Sum_probs=61.0
Q ss_pred ccccccccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc-----CCeEEEEeCChhHHhhhhhhhc---c
Q psy1134 23 QFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-----AKKVIACEIDPSCKSYFPSLYY---F 94 (149)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~v~giD~s~~~i~~a~~~~~---~ 94 (149)
.-++..|+.| ++..+++.+... ...+.+|||+|||+|.++..++++ ..+|+++|+++.+++.|+++.. +
T Consensus 25 ~~~~~~GqFf-TP~~iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~ 101 (241)
T PHA03412 25 TNNSELGAFF-TPIGLARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATW 101 (241)
T ss_pred cccccCCccC-CCHHHHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEE
Confidence 3445667755 888887776533 224679999999999999998764 3589999999999999998752 1
Q ss_pred cCeeec--cCCCCCcchhhH
Q psy1134 95 RNLCLQ--EVPTDFDIKTLI 112 (149)
Q Consensus 95 ~~~~~~--~~~~~~d~v~~~ 112 (149)
...+.. .....||.|++.
T Consensus 102 ~~~D~~~~~~~~~FDlIIsN 121 (241)
T PHA03412 102 INADALTTEFDTLFDMAISN 121 (241)
T ss_pred EEcchhcccccCCccEEEEC
Confidence 112221 123467777653
No 72
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.03 E-value=3.8e-09 Score=77.74 Aligned_cols=86 Identities=16% Similarity=0.223 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcC---CeEEEEeCChhHHhhhhhhhcc----cCeeecc------
Q psy1134 35 NPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA---KKVIACEIDPSCKSYFPSLYYF----RNLCLQE------ 101 (149)
Q Consensus 35 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~i~~a~~~~~~----~~~~~~~------ 101 (149)
...+...++..+...++.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++++.. .++....
T Consensus 36 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 115 (239)
T PRK00216 36 HRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL 115 (239)
T ss_pred cHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence 35677777787777677899999999999999998874 7999999999999999887532 1222111
Q ss_pred --CCCCCcchhhHHHHhccccc
Q psy1134 102 --VPTDFDIKTLIDTVLNEINF 121 (149)
Q Consensus 102 --~~~~~d~v~~~~~~l~~~~~ 121 (149)
....+|.|++. .++++...
T Consensus 116 ~~~~~~~D~I~~~-~~l~~~~~ 136 (239)
T PRK00216 116 PFPDNSFDAVTIA-FGLRNVPD 136 (239)
T ss_pred CCCCCCccEEEEe-cccccCCC
Confidence 12568887664 55555543
No 73
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.02 E-value=6.5e-10 Score=82.73 Aligned_cols=105 Identities=20% Similarity=0.313 Sum_probs=69.1
Q ss_pred HHHHcCCCCCCeEEEEcCCcchhHHHHHhc-C-CeEEEEeCChhHHhhhhhhhcccCee----ecc----------CCCC
Q psy1134 42 IVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-A-KKVIACEIDPSCKSYFPSLYYFRNLC----LQE----------VPTD 105 (149)
Q Consensus 42 ~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~giD~s~~~i~~a~~~~~~~~~~----~~~----------~~~~ 105 (149)
+.++.+....++|||+|||+|.+++.++++ . .+|+|||+++++++.|+++.....+. +.. ...+
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~ 115 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFAS 115 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccc
Confidence 334555556889999999999999999998 4 79999999999999999986543322 111 1135
Q ss_pred CcchhhHH------HHhc--cccchhHhhccCChhhHHHHHHhhhccCc
Q psy1134 106 FDIKTLID------TVLN--EINFADKRARTMDLDDFVLLLATFNKHGI 146 (149)
Q Consensus 106 ~d~v~~~~------~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (149)
||.|+|.+ ...+ ............+..++++....+-+.|.
T Consensus 116 fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G 164 (248)
T COG4123 116 FDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGG 164 (248)
T ss_pred cCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCC
Confidence 88888742 1111 12222233334566777777666555553
No 74
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.02 E-value=9.5e-10 Score=78.73 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=47.2
Q ss_pred CCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhcc---cCeeecc-------CCCCCcchhhH
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYYF---RNLCLQE-------VPTDFDIKTLI 112 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~~---~~~~~~~-------~~~~~d~v~~~ 112 (149)
++++|||+|||+|.++..++.. +.+|+|+|+|++|++.++++... .++.... ....||.|++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEeh
Confidence 5889999999999999998866 46899999999999998876432 2222211 23578887664
No 75
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.01 E-value=8.5e-10 Score=81.11 Aligned_cols=85 Identities=18% Similarity=0.110 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCC---CCCCeEEEEcCCcchhHHHHHhcC--CeEEEEeCChhHHhhhhhhhcc------cCeeecc-CCC
Q psy1134 37 LIIQSIVDKGAI---RPTDTVLEIGPGTGNMTVKILEQA--KKVIACEIDPSCKSYFPSLYYF------RNLCLQE-VPT 104 (149)
Q Consensus 37 ~~~~~~~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~i~~a~~~~~~------~~~~~~~-~~~ 104 (149)
.....+++.+.. .++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.++++... .++.... ...
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 97 (240)
T TIGR02072 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDS 97 (240)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCC
Confidence 334444444432 345789999999999999999883 5789999999999998876431 1111111 236
Q ss_pred CCcchhhHHHHhccccch
Q psy1134 105 DFDIKTLIDTVLNEINFA 122 (149)
Q Consensus 105 ~~d~v~~~~~~l~~~~~~ 122 (149)
.||.|++. .+++++.++
T Consensus 98 ~fD~vi~~-~~l~~~~~~ 114 (240)
T TIGR02072 98 SFDLIVSN-LALQWCDDL 114 (240)
T ss_pred ceeEEEEh-hhhhhccCH
Confidence 79999876 777776543
No 76
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.01 E-value=1.3e-09 Score=82.30 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=34.0
Q ss_pred CCCeEEEEcCCcch----hHHHHHhc-------CCeEEEEeCChhHHhhhhhh
Q psy1134 50 PTDTVLEIGPGTGN----MTVKILEQ-------AKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 50 ~~~~vLDiGcG~G~----~~~~l~~~-------~~~v~giD~s~~~i~~a~~~ 91 (149)
++.+|||+|||||- ++..+++. +.+|+|+|+|+.|++.|++.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 45689999999996 55555554 35899999999999999875
No 77
>PRK14967 putative methyltransferase; Provisional
Probab=99.01 E-value=1.1e-09 Score=80.74 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCC-eEEEEeCChhHHhhhhhhhc
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK-KVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~i~~a~~~~~ 93 (149)
.......+......++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++..
T Consensus 22 s~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~ 80 (223)
T PRK14967 22 TQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNAL 80 (223)
T ss_pred HHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHH
Confidence 44455555666666788999999999999999988754 99999999999999988764
No 78
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.00 E-value=1.6e-09 Score=79.19 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=53.8
Q ss_pred cCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhc
Q psy1134 34 KNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 34 ~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~ 93 (149)
..+....++...+...++.+|||+|||+|.++..+++...+|+++|+++++++.+++++.
T Consensus 62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~ 121 (212)
T PRK00312 62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLK 121 (212)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHH
Confidence 568888899999988889999999999999999888887799999999999999988753
No 79
>PRK04148 hypothetical protein; Provisional
Probab=98.95 E-value=3.1e-09 Score=72.20 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCcch-hHHHHHhcCCeEEEEeCChhHHhhhhhhh
Q psy1134 37 LIIQSIVDKGAIRPTDTVLEIGPGTGN-MTVKILEQAKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 37 ~~~~~~~~~l~~~~~~~vLDiGcG~G~-~~~~l~~~~~~v~giD~s~~~i~~a~~~~ 92 (149)
.+.+.+.+.++..++.++||||||+|. ++..|++.|..|+++|+|+..++.++++.
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~ 59 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG 59 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC
Confidence 355667777766677899999999996 99999988999999999999999987763
No 80
>KOG1540|consensus
Probab=98.95 E-value=3.4e-09 Score=78.66 Aligned_cols=94 Identities=21% Similarity=0.225 Sum_probs=67.1
Q ss_pred ccccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--C------CeEEEEeCChhHHhhhhhhhcc----
Q psy1134 27 DFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--A------KKVIACEIDPSCKSYFPSLYYF---- 94 (149)
Q Consensus 27 ~~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~------~~v~giD~s~~~i~~a~~~~~~---- 94 (149)
+.|.| .-|.+.....+.+.++.++||++||||.++.-+.+. . .+|+.+|+||+|++.++++...
T Consensus 81 SlGiH----RlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~ 156 (296)
T KOG1540|consen 81 SLGIH----RLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK 156 (296)
T ss_pred hcchh----HHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC
Confidence 45654 336677778899889999999999999999999887 3 6899999999999999887521
Q ss_pred ---------cCeeecc-CCCCCcchhhHHHHhccccchhHh
Q psy1134 95 ---------RNLCLQE-VPTDFDIKTLIDTVLNEINFADKR 125 (149)
Q Consensus 95 ---------~~~~~~~-~~~~~d~v~~~~~~l~~~~~~~~~ 125 (149)
.+.+... ....||..++. -.+.+.++..+.
T Consensus 157 ~~~~~~w~~~dAE~LpFdd~s~D~yTia-fGIRN~th~~k~ 196 (296)
T KOG1540|consen 157 ASSRVEWVEGDAEDLPFDDDSFDAYTIA-FGIRNVTHIQKA 196 (296)
T ss_pred cCCceEEEeCCcccCCCCCCcceeEEEe-cceecCCCHHHH
Confidence 1222222 22577777664 444555544443
No 81
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.94 E-value=2e-09 Score=84.14 Aligned_cols=73 Identities=12% Similarity=0.195 Sum_probs=54.6
Q ss_pred HHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhcccCee--ec------cCCCCCcch
Q psy1134 40 QSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYYFRNLC--LQ------EVPTDFDIK 109 (149)
Q Consensus 40 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~--~~------~~~~~~d~v 109 (149)
+.+++.++....++|||+|||+|.++..++++ ..+|+++|+|+.+++.+++++...+.. .. .....||.|
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI 265 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI 265 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence 45566666555668999999999999999987 358999999999999998876433221 11 124578888
Q ss_pred hhH
Q psy1134 110 TLI 112 (149)
Q Consensus 110 ~~~ 112 (149)
++.
T Consensus 266 vsN 268 (342)
T PRK09489 266 ISN 268 (342)
T ss_pred EEC
Confidence 774
No 82
>PRK06922 hypothetical protein; Provisional
Probab=98.93 E-value=3e-09 Score=88.39 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=52.5
Q ss_pred cCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhccc--Ce-----eec-----cCCCCCcchhh
Q psy1134 46 GAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYYFR--NL-----CLQ-----EVPTDFDIKTL 111 (149)
Q Consensus 46 l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~~~--~~-----~~~-----~~~~~~d~v~~ 111 (149)
.+..++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++.... +. +.. ..+.+||.+++
T Consensus 414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 414 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred hhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 34446889999999999999998876 679999999999999998764221 11 111 12357898876
Q ss_pred HHHHhccc
Q psy1134 112 IDTVLNEI 119 (149)
Q Consensus 112 ~~~~l~~~ 119 (149)
. .+++++
T Consensus 494 n-~vLH~L 500 (677)
T PRK06922 494 S-SILHEL 500 (677)
T ss_pred c-hHHHhh
Confidence 5 555543
No 83
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.93 E-value=2.8e-09 Score=85.98 Aligned_cols=58 Identities=21% Similarity=0.182 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhc
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~ 93 (149)
..+.+.+++.+...++.+|||+|||+|.+++.+++.+.+|+|+|+|+.|++.|++++.
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~ 340 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENAR 340 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH
Confidence 4455666677776678899999999999999999998999999999999999998864
No 84
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.93 E-value=3.6e-09 Score=80.86 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=50.9
Q ss_pred cccccccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcC-CeEEEEeCChhHHhhhhhhhcc
Q psy1134 24 FNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA-KKVIACEIDPSCKSYFPSLYYF 94 (149)
Q Consensus 24 ~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~i~~a~~~~~~ 94 (149)
+...+|-...-....+..++.... .++++|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++...
T Consensus 134 pg~aFgtG~h~tt~l~l~~l~~~~-~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~ 204 (288)
T TIGR00406 134 PGLAFGTGTHPTTSLCLEWLEDLD-LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL 204 (288)
T ss_pred CCCcccCCCCHHHHHHHHHHHhhc-CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH
Confidence 334454433333444444555443 367899999999999999988775 5899999999999999988643
No 85
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=4.5e-09 Score=74.85 Aligned_cols=61 Identities=21% Similarity=0.216 Sum_probs=48.5
Q ss_pred cCHHHHHHHHHHc---CCCCCCeEEEEcCCcchhHHHHHhcC-CeEEEEeCChhHHhhhhhhhcc
Q psy1134 34 KNPLIIQSIVDKG---AIRPTDTVLEIGPGTGNMTVKILEQA-KKVIACEIDPSCKSYFPSLYYF 94 (149)
Q Consensus 34 ~~~~~~~~~~~~l---~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~i~~a~~~~~~ 94 (149)
++......++... ..-.+++|+|+|||||.+++-.+-.| ..|+|+|+++++++.+++|...
T Consensus 26 Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~ 90 (198)
T COG2263 26 TPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE 90 (198)
T ss_pred CChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh
Confidence 4555555544433 33468899999999999999988885 6899999999999999998753
No 86
>PHA03411 putative methyltransferase; Provisional
Probab=98.92 E-value=4.3e-09 Score=79.49 Aligned_cols=82 Identities=17% Similarity=0.222 Sum_probs=57.1
Q ss_pred cccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc---ccCeeecc-
Q psy1134 28 FGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY---FRNLCLQE- 101 (149)
Q Consensus 28 ~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~---~~~~~~~~- 101 (149)
.|+.| .+..+...+. +....+.+|||+|||+|.++..++.+ +.+|+|+|+|+.|++.+++++. +...+...
T Consensus 45 ~G~Ff-TP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~ 121 (279)
T PHA03411 45 SGAFF-TPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEF 121 (279)
T ss_pred ceeEc-CCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhh
Confidence 46654 7777765543 23334679999999999999988776 4699999999999999988642 11111111
Q ss_pred -CCCCCcchhhH
Q psy1134 102 -VPTDFDIKTLI 112 (149)
Q Consensus 102 -~~~~~d~v~~~ 112 (149)
....||.|++.
T Consensus 122 ~~~~kFDlIIsN 133 (279)
T PHA03411 122 ESNEKFDVVISN 133 (279)
T ss_pred cccCCCcEEEEc
Confidence 23578888774
No 87
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.92 E-value=4.7e-09 Score=75.99 Aligned_cols=60 Identities=27% Similarity=0.238 Sum_probs=50.8
Q ss_pred cCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhc
Q psy1134 34 KNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 34 ~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~ 93 (149)
+.++.+...+..+...++.+|||+|||+|.++..++.. +.+|+++|+|+.+++.++++..
T Consensus 24 t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~ 86 (198)
T PRK00377 24 TKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAE 86 (198)
T ss_pred CHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence 33566666778888889999999999999999998765 4689999999999999988753
No 88
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.91 E-value=3.4e-09 Score=81.99 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=44.7
Q ss_pred HHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcc
Q psy1134 43 VDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYF 94 (149)
Q Consensus 43 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~ 94 (149)
.+.+...++.+|||+|||+|.+++.+++.+.+|+|+|+|+.+++.|+++...
T Consensus 166 ~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~ 217 (315)
T PRK03522 166 RDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAE 217 (315)
T ss_pred HHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH
Confidence 3444434578999999999999999999999999999999999999988644
No 89
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.90 E-value=6.4e-09 Score=79.22 Aligned_cols=85 Identities=18% Similarity=0.168 Sum_probs=61.5
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCC-eEEEEeCChhHHhhhhh--hhc-c------cCeeec--cCCCCC
Q psy1134 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK-KVIACEIDPSCKSYFPS--LYY-F------RNLCLQ--EVPTDF 106 (149)
Q Consensus 39 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~i~~a~~--~~~-~------~~~~~~--~~~~~~ 106 (149)
..++...++..+|++|||||||.|+.+..++.+|+ .|+|+|.++......+. ++. . -.+.++ .....|
T Consensus 104 W~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~F 183 (315)
T PF08003_consen 104 WDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAF 183 (315)
T ss_pred HHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCc
Confidence 35577777767899999999999999999988854 79999999987766432 111 1 101111 124789
Q ss_pred cchhhHHHHhccccchhH
Q psy1134 107 DIKTLIDTVLNEINFADK 124 (149)
Q Consensus 107 d~v~~~~~~l~~~~~~~~ 124 (149)
|.|++. +||.|..+|..
T Consensus 184 DtVF~M-GVLYHrr~Pl~ 200 (315)
T PF08003_consen 184 DTVFSM-GVLYHRRSPLD 200 (315)
T ss_pred CEEEEe-eehhccCCHHH
Confidence 999999 99988776533
No 90
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.90 E-value=4.4e-09 Score=76.88 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=59.8
Q ss_pred ccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc-C--CeEEEEeCChhHHhhhhhhhcc---cCeeecc-----
Q psy1134 33 LKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-A--KKVIACEIDPSCKSYFPSLYYF---RNLCLQE----- 101 (149)
Q Consensus 33 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~i~~a~~~~~~---~~~~~~~----- 101 (149)
...+....++++.+.+.++.+|||||||+|+.+..++.. + .+|+++|.++.+++.|++++.. .+.....
T Consensus 55 is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 55 ISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE 134 (209)
T ss_dssp E--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG
T ss_pred chHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh
Confidence 366999999999999999999999999999999999987 3 3699999999999999988642 2322221
Q ss_pred ---CCCCCcchhhH
Q psy1134 102 ---VPTDFDIKTLI 112 (149)
Q Consensus 102 ---~~~~~d~v~~~ 112 (149)
....||.|++.
T Consensus 135 g~~~~apfD~I~v~ 148 (209)
T PF01135_consen 135 GWPEEAPFDRIIVT 148 (209)
T ss_dssp TTGGG-SEEEEEES
T ss_pred ccccCCCcCEEEEe
Confidence 22578888765
No 91
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.89 E-value=2.3e-08 Score=73.85 Aligned_cols=83 Identities=20% Similarity=0.172 Sum_probs=57.6
Q ss_pred CCCCCcCcchhhHHHHHHHhhcccccccccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeC
Q psy1134 1 MQLPNVDKLNYYVCRTVWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEI 80 (149)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~ 80 (149)
||-..+...+||.+...+... .|.+.- .++.+.++. ..+...++.+||.+|||.|.-+..|+++|.+|+|+|+
T Consensus 1 ~~~~~~~~~~fW~~rw~~~~~-----~f~~~~-pnp~L~~~~-~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDl 73 (226)
T PRK13256 1 MNKLETNNNQYWLDRWQNDDV-----GFCQES-PNEFLVKHF-SKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIEL 73 (226)
T ss_pred CCccccCCHHHHHHHHhcCCC-----CCccCC-CCHHHHHHH-HhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEec
Confidence 444444455577777755421 111111 224444443 3444456789999999999999999999999999999
Q ss_pred ChhHHhhhhh
Q psy1134 81 DPSCKSYFPS 90 (149)
Q Consensus 81 s~~~i~~a~~ 90 (149)
|+.+++.+.+
T Consensus 74 S~~Ai~~~~~ 83 (226)
T PRK13256 74 SEKAVLSFFS 83 (226)
T ss_pred CHHHHHHHHH
Confidence 9999999755
No 92
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.88 E-value=5.2e-09 Score=79.14 Aligned_cols=74 Identities=22% Similarity=0.256 Sum_probs=52.2
Q ss_pred CCCCCCeEEEEcCCcchhHHHHHhc-C--CeEEEEeCChhHHhhhhhhhcc---cCeeec-------cC-CCCCcchhhH
Q psy1134 47 AIRPTDTVLEIGPGTGNMTVKILEQ-A--KKVIACEIDPSCKSYFPSLYYF---RNLCLQ-------EV-PTDFDIKTLI 112 (149)
Q Consensus 47 ~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~i~~a~~~~~~---~~~~~~-------~~-~~~~d~v~~~ 112 (149)
...++++|||+|||+|..+..+++. + .+|+|+|+|+.|++.|+++... .+.... .. ...||.|++.
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 4457889999999999998877765 3 4799999999999999886422 122111 11 2478888765
Q ss_pred HHHhccccc
Q psy1134 113 DTVLNEINF 121 (149)
Q Consensus 113 ~~~l~~~~~ 121 (149)
.++++.+.
T Consensus 154 -~v~~~~~d 161 (272)
T PRK11873 154 -CVINLSPD 161 (272)
T ss_pred -CcccCCCC
Confidence 56655544
No 93
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.88 E-value=1.3e-08 Score=74.60 Aligned_cols=87 Identities=18% Similarity=0.147 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHcCC----CCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcccC---eeec-------
Q psy1134 35 NPLIIQSIVDKGAI----RPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRN---LCLQ------- 100 (149)
Q Consensus 35 ~~~~~~~~~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~~---~~~~------- 100 (149)
++....++...+.. .++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.++++..... ....
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~ 105 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDL 105 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHh
Confidence 34445555555542 347799999999999999998888889999999999999987653221 1111
Q ss_pred c--CCCCCcchhhHHHHhccccch
Q psy1134 101 E--VPTDFDIKTLIDTVLNEINFA 122 (149)
Q Consensus 101 ~--~~~~~d~v~~~~~~l~~~~~~ 122 (149)
. .+..||++++. .+++++..+
T Consensus 106 ~~~~~~~~D~i~~~-~~l~~~~~~ 128 (224)
T TIGR01983 106 AEKGAKSFDVVTCM-EVLEHVPDP 128 (224)
T ss_pred hcCCCCCccEEEeh-hHHHhCCCH
Confidence 1 12579988776 666666543
No 94
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.88 E-value=4.6e-09 Score=82.95 Aligned_cols=55 Identities=13% Similarity=0.194 Sum_probs=47.2
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc
Q psy1134 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 39 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~ 93 (149)
.+.+++.++...+++|||+|||+|.++..++++ ..+|+++|+|+.+++.+++++.
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~ 273 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVE 273 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence 455677777665679999999999999999887 5799999999999999998863
No 95
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.87 E-value=6.8e-09 Score=76.40 Aligned_cols=44 Identities=20% Similarity=0.118 Sum_probs=39.5
Q ss_pred cCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhh
Q psy1134 46 GAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 46 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~ 89 (149)
+...++.+|||+|||.|..+..|+++|.+|+|||+|+.+++.+.
T Consensus 33 ~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 33 LALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF 76 (218)
T ss_pred hCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH
Confidence 44446789999999999999999999999999999999999864
No 96
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.87 E-value=8.5e-09 Score=73.46 Aligned_cols=78 Identities=26% Similarity=0.259 Sum_probs=62.5
Q ss_pred cCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc---ccCeeecc--C----
Q psy1134 34 KNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY---FRNLCLQE--V---- 102 (149)
Q Consensus 34 ~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~---~~~~~~~~--~---- 102 (149)
+-++++...++.|.+.++++++|||||||..++..+.. ..+|+++|-++++++..++|.+ ..++.+.. .
T Consensus 18 TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L 97 (187)
T COG2242 18 TKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL 97 (187)
T ss_pred cHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh
Confidence 44788999999999999999999999999999999954 6799999999999999998853 44444432 1
Q ss_pred -C-CCCcchhh
Q psy1134 103 -P-TDFDIKTL 111 (149)
Q Consensus 103 -~-~~~d~v~~ 111 (149)
. ..+|.+++
T Consensus 98 ~~~~~~daiFI 108 (187)
T COG2242 98 PDLPSPDAIFI 108 (187)
T ss_pred cCCCCCCEEEE
Confidence 1 15777765
No 97
>PRK14968 putative methyltransferase; Provisional
Probab=98.86 E-value=7.1e-09 Score=73.78 Aligned_cols=52 Identities=23% Similarity=0.397 Sum_probs=44.4
Q ss_pred HHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhc
Q psy1134 42 IVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 42 ~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~ 93 (149)
+.+.+...++++|||+|||+|.++..+++.+.+|+|+|+|+++++.++++..
T Consensus 15 l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~ 66 (188)
T PRK14968 15 LAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAK 66 (188)
T ss_pred HHHhhhccCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHH
Confidence 4444444578899999999999999999989999999999999999987753
No 98
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.85 E-value=7.2e-09 Score=79.69 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhh
Q psy1134 37 LIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 37 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~ 92 (149)
.....+.+.++ ++.+|||+|||+|..+..|++. +.+|+++|+|++|++.+++++
T Consensus 52 ~~~~~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l 108 (301)
T TIGR03438 52 RHADEIAAATG--AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAAL 108 (301)
T ss_pred HHHHHHHHhhC--CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHH
Confidence 34555555554 5678999999999999999888 478999999999999998774
No 99
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.85 E-value=1.1e-08 Score=79.58 Aligned_cols=60 Identities=23% Similarity=0.260 Sum_probs=53.1
Q ss_pred cCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhc
Q psy1134 34 KNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 34 ~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~ 93 (149)
..+.+...+++...+.++++|||+|||+|.++..++..+.+|+|+|+|+.|++.+++|+.
T Consensus 166 l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~ 225 (329)
T TIGR01177 166 MDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLE 225 (329)
T ss_pred CCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHH
Confidence 347788888888888888999999999999998887779999999999999999998864
No 100
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.84 E-value=2.2e-09 Score=77.58 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=38.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~ 93 (149)
...++||||||+|.++..+++. ...|+|+|+++.+++.|+++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~ 61 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKAN 61 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHH
Confidence 4568999999999999999987 5689999999999999987653
No 101
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.84 E-value=1.1e-08 Score=79.39 Aligned_cols=61 Identities=18% Similarity=0.155 Sum_probs=52.7
Q ss_pred ccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcC---CeEEEEeCChhHHhhhhhhhc
Q psy1134 33 LKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA---KKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 33 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~i~~a~~~~~ 93 (149)
..++.+...+.+.+.+.++++|||+|||+|.++..+++.. ..|+++|+++++++.|++++.
T Consensus 63 ~~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~ 126 (322)
T PRK13943 63 SSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVR 126 (322)
T ss_pred CCcHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHH
Confidence 3467888889898888888999999999999999999873 369999999999999987653
No 102
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.83 E-value=1.8e-08 Score=73.44 Aligned_cols=84 Identities=18% Similarity=0.229 Sum_probs=60.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcC---CeEEEEeCChhHHhhhhhhhcc-cCeee-----cc---CC
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA---KKVIACEIDPSCKSYFPSLYYF-RNLCL-----QE---VP 103 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~i~~a~~~~~~-~~~~~-----~~---~~ 103 (149)
..+...+...+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++... .++.. .. ..
T Consensus 25 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (223)
T TIGR01934 25 RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFED 104 (223)
T ss_pred HHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCC
Confidence 4566777777776678899999999999999998883 4899999999999999876531 11111 11 22
Q ss_pred CCCcchhhHHHHhcccc
Q psy1134 104 TDFDIKTLIDTVLNEIN 120 (149)
Q Consensus 104 ~~~d~v~~~~~~l~~~~ 120 (149)
..+|.+++. .++++..
T Consensus 105 ~~~D~i~~~-~~~~~~~ 120 (223)
T TIGR01934 105 NSFDAVTIA-FGLRNVT 120 (223)
T ss_pred CcEEEEEEe-eeeCCcc
Confidence 468887665 4555444
No 103
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.83 E-value=1.2e-08 Score=77.25 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=49.0
Q ss_pred HHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcC-----CeEEEEeCChhHHhhhhhhhcc-----cCeeecc-CCCCCcc
Q psy1134 40 QSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA-----KKVIACEIDPSCKSYFPSLYYF-----RNLCLQE-VPTDFDI 108 (149)
Q Consensus 40 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~v~giD~s~~~i~~a~~~~~~-----~~~~~~~-~~~~~d~ 108 (149)
..+.+.+. .+..+|||+|||+|.++..+++.. ..|+|+|+|+.|++.|+++... .+..... ...+||.
T Consensus 76 ~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~ 154 (272)
T PRK11088 76 NLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDA 154 (272)
T ss_pred HHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeE
Confidence 33333333 355789999999999999988752 3799999999999999876421 1111111 2357888
Q ss_pred hhhH
Q psy1134 109 KTLI 112 (149)
Q Consensus 109 v~~~ 112 (149)
|+++
T Consensus 155 I~~~ 158 (272)
T PRK11088 155 IIRI 158 (272)
T ss_pred EEEe
Confidence 8754
No 104
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.83 E-value=1.5e-08 Score=80.05 Aligned_cols=98 Identities=18% Similarity=0.136 Sum_probs=65.7
Q ss_pred HHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhccc---Ceeecc----------CCCCC
Q psy1134 42 IVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYYFR---NLCLQE----------VPTDF 106 (149)
Q Consensus 42 ~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~~~---~~~~~~----------~~~~~ 106 (149)
+...+....+..+||||||+|.++..+|+. ...++|+|+++.+++.+.++.... ++.... ...++
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~ 193 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSV 193 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCce
Confidence 444555556679999999999999999998 578999999999999998775332 222211 11234
Q ss_pred cchhhHHHHhccccchh--HhhccCChhhHHHHHHhhhccC
Q psy1134 107 DIKTLIDTVLNEINFAD--KRARTMDLDDFVLLLATFNKHG 145 (149)
Q Consensus 107 d~v~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 145 (149)
|.|. .+.|+++ ++.+++....|+..+...-+.|
T Consensus 194 D~I~------lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpG 228 (390)
T PRK14121 194 EKIF------VHFPVPWDKKPHRRVISEDFLNEALRVLKPG 228 (390)
T ss_pred eEEE------EeCCCCccccchhhccHHHHHHHHHHHcCCC
Confidence 4443 3456554 2334455677888877765555
No 105
>PRK04266 fibrillarin; Provisional
Probab=98.81 E-value=1.4e-08 Score=75.13 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=41.5
Q ss_pred HcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhh
Q psy1134 45 KGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 45 ~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~ 92 (149)
.+++.++.+|||+|||+|.++..+++. ..+|+|+|+++.|++.+.++.
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a 116 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVA 116 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHh
Confidence 577788999999999999999999987 358999999999998665443
No 106
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.80 E-value=1e-08 Score=74.49 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=38.7
Q ss_pred CCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~ 92 (149)
++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~ 84 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKI 84 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHH
Confidence 5779999999999999999887 468999999999999998765
No 107
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.79 E-value=9.7e-09 Score=67.76 Aligned_cols=44 Identities=25% Similarity=0.365 Sum_probs=40.1
Q ss_pred CCeEEEEcCCcchhHHHHHhcC-CeEEEEeCChhHHhhhhhhhcc
Q psy1134 51 TDTVLEIGPGTGNMTVKILEQA-KKVIACEIDPSCKSYFPSLYYF 94 (149)
Q Consensus 51 ~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~i~~a~~~~~~ 94 (149)
|.+|||+|||+|.++..+++.+ .+++|+|+++..++.++.++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~ 45 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPR 45 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHH
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHH
Confidence 4689999999999999999997 8999999999999999987643
No 108
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.79 E-value=1.5e-08 Score=81.45 Aligned_cols=57 Identities=18% Similarity=0.268 Sum_probs=48.4
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcc
Q psy1134 38 IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYF 94 (149)
Q Consensus 38 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~ 94 (149)
+...+.+.+...++++|||+|||+|.+++.+++.+.+|+|+|+|+.+++.|++|+..
T Consensus 280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~ 336 (431)
T TIGR00479 280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAEL 336 (431)
T ss_pred HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHH
Confidence 344555556666778999999999999999999888999999999999999988643
No 109
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.78 E-value=6.4e-09 Score=75.47 Aligned_cols=80 Identities=21% Similarity=0.382 Sum_probs=53.0
Q ss_pred HHHhhcccccccccccccCHH--HHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHh--cCCeEEEEeCChhHHhhhhhhh
Q psy1134 17 VWKICIQFNKDFGQHILKNPL--IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILE--QAKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~giD~s~~~i~~a~~~~ 92 (149)
.++++..+.......++.... =..++.+. ..+++.|+|..||.|.+++++++ .++.|+++|++|..++.++++.
T Consensus 68 ~~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni 145 (200)
T PF02475_consen 68 HKENGIRFKVDLSKVYFSPRLSTERRRIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENI 145 (200)
T ss_dssp EEETTEEEEEETTTS---GGGHHHHHHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHH
T ss_pred EEeCCEEEEEccceEEEccccHHHHHHHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHH
Confidence 456666666666666654422 22334333 45789999999999999999998 4788999999999999999987
Q ss_pred cccCee
Q psy1134 93 YFRNLC 98 (149)
Q Consensus 93 ~~~~~~ 98 (149)
+.....
T Consensus 146 ~lNkv~ 151 (200)
T PF02475_consen 146 RLNKVE 151 (200)
T ss_dssp HHTT-T
T ss_pred HHcCCC
Confidence 655444
No 110
>PRK04457 spermidine synthase; Provisional
Probab=98.76 E-value=5.7e-08 Score=73.38 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=45.8
Q ss_pred HHHHHHHHHcC-CCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc
Q psy1134 37 LIIQSIVDKGA-IRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 37 ~~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~ 93 (149)
.+.+.|...+. ..++++|||||||+|.++..+++. +.+|+++|+++++++.|++++.
T Consensus 52 ~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~ 111 (262)
T PRK04457 52 AYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFE 111 (262)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcC
Confidence 35555554433 235789999999999999999877 5789999999999999998764
No 111
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=2.1e-08 Score=76.39 Aligned_cols=73 Identities=16% Similarity=0.282 Sum_probs=51.8
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcC--CeEEEEeCChhHHhhhhhhhcccCe------eecc---CCCCC
Q psy1134 38 IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA--KKVIACEIDPSCKSYFPSLYYFRNL------CLQE---VPTDF 106 (149)
Q Consensus 38 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~i~~a~~~~~~~~~------~~~~---~~~~~ 106 (149)
+.+.+...+..... +|||+|||||.+++.++..+ ..|+|+|+|+.+++.|++|....++ ...+ ....|
T Consensus 99 Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~f 177 (280)
T COG2890 99 LVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKF 177 (280)
T ss_pred HHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCce
Confidence 44444333332222 79999999999999999984 4999999999999999998755431 1111 22468
Q ss_pred cchhh
Q psy1134 107 DIKTL 111 (149)
Q Consensus 107 d~v~~ 111 (149)
|.+++
T Consensus 178 DlIVs 182 (280)
T COG2890 178 DLIVS 182 (280)
T ss_pred eEEEe
Confidence 88876
No 112
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.73 E-value=3.3e-08 Score=75.50 Aligned_cols=49 Identities=16% Similarity=0.189 Sum_probs=41.7
Q ss_pred HcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc
Q psy1134 45 KGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 45 ~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~ 93 (149)
.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++..
T Consensus 116 ~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~ 166 (284)
T TIGR03533 116 WLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIE 166 (284)
T ss_pred HhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 343345678999999999999999987 5699999999999999998864
No 113
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.72 E-value=2.8e-08 Score=79.09 Aligned_cols=55 Identities=16% Similarity=0.284 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc
Q psy1134 37 LIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 37 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~ 93 (149)
.+.+.+.+.+. ++.+|||+|||+|.+++.++.. +.+|+|+|+|+.+++.|++|..
T Consensus 240 ~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~ 296 (423)
T PRK14966 240 HLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAA 296 (423)
T ss_pred HHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence 34555555443 4569999999999999998865 6799999999999999998864
No 114
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.72 E-value=2.9e-08 Score=78.51 Aligned_cols=64 Identities=11% Similarity=0.134 Sum_probs=50.6
Q ss_pred cccCHHHHHHHHHH----cCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhccc
Q psy1134 32 ILKNPLIIQSIVDK----GAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFR 95 (149)
Q Consensus 32 ~~~~~~~~~~~~~~----l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~ 95 (149)
|-.+....+.+++. +...++.+|||+|||+|.+++.++..+.+|+|+|+|+.+++.|++|+...
T Consensus 211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~ 278 (374)
T TIGR02085 211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQML 278 (374)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHc
Confidence 44445666555543 33345679999999999999999988899999999999999999887543
No 115
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=2.4e-08 Score=76.05 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=50.7
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcC--CeEEEEeCChhHHhhhhhhhcccCee
Q psy1134 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA--KKVIACEIDPSCKSYFPSLYYFRNLC 98 (149)
Q Consensus 39 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~ 98 (149)
-+.+++.++...+.+|||+|||.|.+++.+++.. .+|+-+|+|..+++.+++|+...+.+
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~ 208 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE 208 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC
Confidence 4556677877767799999999999999999984 59999999999999999997654443
No 116
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.72 E-value=4.5e-08 Score=71.09 Aligned_cols=61 Identities=11% Similarity=0.036 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHcCC-CCCCeEEEEcCCcchhHHHH-HhcCCeEEEEeCChhHHhhhhhhhccc
Q psy1134 35 NPLIIQSIVDKGAI-RPTDTVLEIGPGTGNMTVKI-LEQAKKVIACEIDPSCKSYFPSLYYFR 95 (149)
Q Consensus 35 ~~~~~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~l-~~~~~~v~giD~s~~~i~~a~~~~~~~ 95 (149)
...+.+.+++.+.. .++.+|||+|||+|.+++.+ ++...+|+++|.++.+++.+++|++..
T Consensus 37 ~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~ 99 (199)
T PRK10909 37 TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATL 99 (199)
T ss_pred CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHh
Confidence 35666667776643 46789999999999999864 444679999999999999999886543
No 117
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.71 E-value=4.7e-08 Score=73.41 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCC-CCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhcc
Q psy1134 36 PLIIQSIVDKGAI-RPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYYF 94 (149)
Q Consensus 36 ~~~~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~~ 94 (149)
..+.+.+...+.. ..+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++|+..
T Consensus 71 e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~ 132 (251)
T TIGR03704 71 EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD 132 (251)
T ss_pred HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 3444555554432 23458999999999999999876 56899999999999999988643
No 118
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.71 E-value=3.8e-08 Score=75.09 Aligned_cols=58 Identities=16% Similarity=0.259 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCCC-CCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc
Q psy1134 36 PLIIQSIVDKGAIRP-TDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~-~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~ 93 (149)
..+....++.+...+ ..+|||+|||+|.++..++.. +.+|+|+|+|+++++.|++|..
T Consensus 99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~ 159 (284)
T TIGR00536 99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAE 159 (284)
T ss_pred HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 445555555543223 368999999999999999987 4699999999999999998864
No 119
>PRK00811 spermidine synthase; Provisional
Probab=98.70 E-value=6e-08 Score=74.04 Aligned_cols=43 Identities=26% Similarity=0.364 Sum_probs=39.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~ 92 (149)
++++||+||||+|..+..+++. ..+|++||+++.+++.|++.+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~ 120 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYL 120 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHh
Confidence 5789999999999999999887 468999999999999999875
No 120
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.70 E-value=4.8e-08 Score=73.74 Aligned_cols=58 Identities=16% Similarity=0.295 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~ 93 (149)
..+.+.+...+...++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.++++..
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 345566665555567789999999999999999987 4799999999999999998865
No 121
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.69 E-value=4.2e-08 Score=77.08 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcccC
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRN 96 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~~ 96 (149)
..+..++.+.+... +++|||+|||+|.+++.+++...+|+|+|+|+++++.|++|+...+
T Consensus 184 ~~l~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~ 243 (353)
T TIGR02143 184 IKMLEWACEVTQGS-KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANN 243 (353)
T ss_pred HHHHHHHHHHhhcC-CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 33445555555432 3479999999999999999988899999999999999999875543
No 122
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.68 E-value=5.9e-08 Score=72.14 Aligned_cols=57 Identities=16% Similarity=0.335 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~ 93 (149)
..+...+++.+. .++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.++++..
T Consensus 74 ~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~ 132 (251)
T TIGR03534 74 EELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAA 132 (251)
T ss_pred HHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 446666666665 34568999999999999999987 5699999999999999988754
No 123
>KOG1500|consensus
Probab=98.67 E-value=4.4e-08 Score=75.58 Aligned_cols=55 Identities=25% Similarity=0.341 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhhhc
Q psy1134 38 IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 38 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~~~ 93 (149)
+.+.++..-..-+++.|||+|||+|+++.+.++. .++|+++|-| +|.++|++...
T Consensus 165 Y~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~ 220 (517)
T KOG1500|consen 165 YQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVA 220 (517)
T ss_pred HHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHh
Confidence 4444444444457889999999999999999888 4689999966 59999987543
No 124
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.67 E-value=5.9e-08 Score=76.19 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcccCe
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNL 97 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~~~ 97 (149)
..+...+.++++..++ +|||+-||+|.++++|++.+.+|+|||+++++++.|++|+...++
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i 243 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI 243 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC
Confidence 4455556666776555 899999999999999999999999999999999999998765444
No 125
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.67 E-value=6.1e-08 Score=72.05 Aligned_cols=62 Identities=16% Similarity=-0.046 Sum_probs=48.8
Q ss_pred cCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhccc
Q psy1134 34 KNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYYFR 95 (149)
Q Consensus 34 ~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~~~ 95 (149)
..+.....+...+...++++|||+|||+|..++.++.. +.+|+++|+++++++.|++++...
T Consensus 52 v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~ 116 (234)
T PLN02781 52 VPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA 116 (234)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 44544455545555567889999999999999888775 569999999999999999987543
No 126
>KOG3010|consensus
Probab=98.66 E-value=7.1e-08 Score=71.14 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhccc---------C---eeeccCC
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFR---------N---LCLQEVP 103 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~---------~---~~~~~~~ 103 (149)
..|...++..-+- .+.++|+|||+|..++.+++.-.+|+|+|+|+.|++.|+++.... + ....--+
T Consensus 21 tdw~~~ia~~~~~--h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e 98 (261)
T KOG3010|consen 21 TDWFKKIASRTEG--HRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGE 98 (261)
T ss_pred HHHHHHHHhhCCC--cceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCC
Confidence 4555555554332 228999999999888888988899999999999999998764211 1 1111135
Q ss_pred CCCcchhhHHHHhcc
Q psy1134 104 TDFDIKTLIDTVLNE 118 (149)
Q Consensus 104 ~~~d~v~~~~~~l~~ 118 (149)
++.|.|++. ..+|.
T Consensus 99 ~SVDlI~~A-qa~HW 112 (261)
T KOG3010|consen 99 ESVDLITAA-QAVHW 112 (261)
T ss_pred cceeeehhh-hhHHh
Confidence 788888877 44443
No 127
>KOG1271|consensus
Probab=98.66 E-value=3.6e-08 Score=69.98 Aligned_cols=82 Identities=16% Similarity=0.333 Sum_probs=55.8
Q ss_pred hhhHHHHHHHhhccccc--cccccccc---CHHHHHHHHHHcC---CCC-CCeEEEEcCCcchhHHHHHhcC--CeEEEE
Q psy1134 10 NYYVCRTVWKICIQFNK--DFGQHILK---NPLIIQSIVDKGA---IRP-TDTVLEIGPGTGNMTVKILEQA--KKVIAC 78 (149)
Q Consensus 10 ~~~~~~~~~~~~~~~~~--~~g~~~~~---~~~~~~~~~~~l~---~~~-~~~vLDiGcG~G~~~~~l~~~~--~~v~gi 78 (149)
+||++.|..+.. +++. .-|..++. ..++..++...+. ..+ ..+|||+|||.|.+...|++.+ .+.+|+
T Consensus 19 ~yWD~~Y~~El~-Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~Gv 97 (227)
T KOG1271|consen 19 SYWDAAYELELT-NFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGV 97 (227)
T ss_pred HHHHHHHHHHHh-hcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCcccc
Confidence 477777766533 2221 12222222 2566777766655 223 3499999999999999999984 469999
Q ss_pred eCChhHHhhhhhhh
Q psy1134 79 EIDPSCKSYFPSLY 92 (149)
Q Consensus 79 D~s~~~i~~a~~~~ 92 (149)
|.|+.+++.|+...
T Consensus 98 DYs~~AV~LA~niA 111 (227)
T KOG1271|consen 98 DYSEKAVELAQNIA 111 (227)
T ss_pred ccCHHHHHHHHHHH
Confidence 99999999987554
No 128
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.65 E-value=7.9e-08 Score=71.15 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=40.4
Q ss_pred HHHHHHcCC-CCCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhh-hhh
Q psy1134 40 QSIVDKGAI-RPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSY-FPS 90 (149)
Q Consensus 40 ~~~~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~-a~~ 90 (149)
..++..+.+ .+++++||+|||||.++..+++. ..+|+|+|++++|+.. .++
T Consensus 64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~ 117 (228)
T TIGR00478 64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ 117 (228)
T ss_pred HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc
Confidence 344444444 36789999999999999999999 4689999999988876 443
No 129
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.65 E-value=1.7e-07 Score=72.14 Aligned_cols=55 Identities=13% Similarity=0.326 Sum_probs=45.1
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc
Q psy1134 38 IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 38 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~ 93 (149)
..+.+.+.+...++.+|||||||+|.++..++++ ..+++++|. +.+++.++++..
T Consensus 137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~ 193 (306)
T TIGR02716 137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA 193 (306)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHH
Confidence 3455666667677889999999999999999988 468999997 789999887754
No 130
>KOG3420|consensus
Probab=98.65 E-value=2.3e-08 Score=68.54 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=53.5
Q ss_pred cccccccCHHHHHHHHHHcCCC----CCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhhhccc
Q psy1134 28 FGQHILKNPLIIQSIVDKGAIR----PTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSLYYFR 95 (149)
Q Consensus 28 ~g~~~~~~~~~~~~~~~~l~~~----~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~~~~~ 95 (149)
+.|+. ..++++.-|+..++-. .|++++|+|||+|.++...+-- ...|+|+|++|++++.+.+|....
T Consensus 23 LEQY~-T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf 94 (185)
T KOG3420|consen 23 LEQYP-TRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEF 94 (185)
T ss_pred hhhCC-CcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHh
Confidence 44443 6788888888877543 6789999999999999666555 678999999999999999986543
No 131
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.65 E-value=8.5e-08 Score=69.11 Aligned_cols=63 Identities=10% Similarity=0.044 Sum_probs=52.0
Q ss_pred ccCHHHHHHHHHHcCC-CCCCeEEEEcCCcchhHHHHHhcCC-eEEEEeCChhHHhhhhhhhccc
Q psy1134 33 LKNPLIIQSIVDKGAI-RPTDTVLEIGPGTGNMTVKILEQAK-KVIACEIDPSCKSYFPSLYYFR 95 (149)
Q Consensus 33 ~~~~~~~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~i~~a~~~~~~~ 95 (149)
-.+..+.+.+++.+.. .++.++||++||+|.+++.++.+++ +|+++|.++.+++.+++|+...
T Consensus 31 pt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~ 95 (189)
T TIGR00095 31 PTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALL 95 (189)
T ss_pred CchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 3456677777787642 3688999999999999999999864 8999999999999999886543
No 132
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.65 E-value=5.2e-08 Score=71.25 Aligned_cols=34 Identities=35% Similarity=0.659 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCCh
Q psy1134 49 RPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDP 82 (149)
Q Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~ 82 (149)
.++.+|||+|||+|.++..+++. ..+|+|||+++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 56789999999999999999887 25899999998
No 133
>KOG1499|consensus
Probab=98.63 E-value=2.9e-08 Score=76.61 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcC-CeEEEEeCChhHHhhhhhhh
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA-KKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~i~~a~~~~ 92 (149)
..++..++..-..-+++.|||+|||||+++.+.++.| .+|+|+|-|. +++.|++.+
T Consensus 46 ~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv 102 (346)
T KOG1499|consen 46 LAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIV 102 (346)
T ss_pred HHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHH
Confidence 3344445444445579999999999999999999995 5899999776 447777654
No 134
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.63 E-value=8.9e-08 Score=73.89 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=39.1
Q ss_pred CCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc
Q psy1134 51 TDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 51 ~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~ 93 (149)
+.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++..
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~ 178 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIE 178 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 368999999999999999887 5699999999999999998864
No 135
>KOG2361|consensus
Probab=98.62 E-value=5.3e-08 Score=71.80 Aligned_cols=105 Identities=21% Similarity=0.257 Sum_probs=69.6
Q ss_pred HHHHHhhcccccccc---cccccCHHHHHHHHHHcCCCCCC---eEEEEcCCcchhHHHHHhc--C--CeEEEEeCChhH
Q psy1134 15 RTVWKICIQFNKDFG---QHILKNPLIIQSIVDKGAIRPTD---TVLEIGPGTGNMTVKILEQ--A--KKVIACEIDPSC 84 (149)
Q Consensus 15 ~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~l~~~~~~---~vLDiGcG~G~~~~~l~~~--~--~~v~giD~s~~~ 84 (149)
.+..+..+.|+..++ ..|+++.+|..+-+..+.....+ +|||+|||.|+...++.+. + -+|+++|.||++
T Consensus 30 ~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~A 109 (264)
T KOG2361|consen 30 KYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRA 109 (264)
T ss_pred hhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHH
Confidence 333333344444333 34667888888877776544333 6999999999999999887 2 589999999999
Q ss_pred HhhhhhhhcccCe---------eec-----cCCCCCcchhhHHHHhcccc
Q psy1134 85 KSYFPSLYYFRNL---------CLQ-----EVPTDFDIKTLIDTVLNEIN 120 (149)
Q Consensus 85 i~~a~~~~~~~~~---------~~~-----~~~~~~d~v~~~~~~l~~~~ 120 (149)
++..+++..+... ... .....+|.++++ -+|.-++
T Consensus 110 i~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I-FvLSAi~ 158 (264)
T KOG2361|consen 110 IELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI-FVLSAIH 158 (264)
T ss_pred HHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE-EEEeccC
Confidence 9999887533211 110 133578888776 4444333
No 136
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.60 E-value=1.2e-07 Score=74.71 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhccc
Q psy1134 38 IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFR 95 (149)
Q Consensus 38 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~ 95 (149)
+..++.+.+... +.++||++||+|.+++.+++...+|+|+|.|+.+++.+++|+...
T Consensus 195 l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~ 251 (362)
T PRK05031 195 MLEWALDATKGS-KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAAN 251 (362)
T ss_pred HHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHh
Confidence 334444444422 357999999999999999988889999999999999999886543
No 137
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.58 E-value=1.6e-07 Score=72.80 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcC--------CCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhccc
Q psy1134 36 PLIIQSIVDKGA--------IRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYYFR 95 (149)
Q Consensus 36 ~~~~~~~~~~l~--------~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~~~ 95 (149)
-.|+.++...+. ..++.++||||||+|.+...++.+ +.+++|+|+|+.+++.|++++...
T Consensus 92 ~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~N 161 (321)
T PRK11727 92 ADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISAN 161 (321)
T ss_pred HHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 345565555542 224578999999999888887765 779999999999999999886544
No 138
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.58 E-value=1.8e-07 Score=72.55 Aligned_cols=79 Identities=16% Similarity=0.110 Sum_probs=65.0
Q ss_pred HHHHhhcccccccccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhccc
Q psy1134 16 TVWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFR 95 (149)
Q Consensus 16 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~ 95 (149)
.+......-+..+++ -..++++.+.+.+.....+|+.|||.-||||.+.+...-.|.+|+|+|++..|++-|+.|+++-
T Consensus 164 ~~~~r~~~kRPf~~p-~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y 242 (347)
T COG1041 164 AFEKRDPEKRPFFRP-GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYY 242 (347)
T ss_pred HHhhcCcccCCccCc-CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhh
Confidence 344444444344444 4567999999999999999999999999999999998777999999999999999999997654
No 139
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.58 E-value=1.6e-07 Score=72.25 Aligned_cols=76 Identities=22% Similarity=0.267 Sum_probs=57.5
Q ss_pred HHHHhhcccccccccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHh---------cCCeEEEEeCChhHHh
Q psy1134 16 TVWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILE---------QAKKVIACEIDPSCKS 86 (149)
Q Consensus 16 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~---------~~~~v~giD~s~~~i~ 86 (149)
.+..+....++..|++| ++..+.+.|.+.+...++.+|+|.+||+|.+...+.+ ....++|+|+++.++.
T Consensus 13 ~l~~~~~~~~k~~G~~~-TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~ 91 (311)
T PF02384_consen 13 FLKKFAKESRKKLGQFY-TPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVA 91 (311)
T ss_dssp HHHHHHHCTTTSCGGC----HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHH
T ss_pred HHHHHHHHhccccceee-hHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHH
Confidence 33444455667778876 8899999999999888888999999999999988776 2568999999999999
Q ss_pred hhhhhh
Q psy1134 87 YFPSLY 92 (149)
Q Consensus 87 ~a~~~~ 92 (149)
.|+.++
T Consensus 92 la~~nl 97 (311)
T PF02384_consen 92 LAKLNL 97 (311)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 988764
No 140
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.57 E-value=1.9e-07 Score=69.76 Aligned_cols=96 Identities=17% Similarity=0.252 Sum_probs=68.7
Q ss_pred ccccccccCHHHHHHHHHHc-----CCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhh-hcccCeee-
Q psy1134 27 DFGQHILKNPLIIQSIVDKG-----AIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSL-YYFRNLCL- 99 (149)
Q Consensus 27 ~~g~~~~~~~~~~~~~~~~l-----~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~-~~~~~~~~- 99 (149)
-.|..|...+.-.++++..- +-.+..++||||+|.|..|..++..-.+|++.|.|+.|....+++ +..-+...
T Consensus 66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w 145 (265)
T PF05219_consen 66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKGFTVLDIDDW 145 (265)
T ss_pred cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCCCeEEehhhh
Confidence 45666666655555555543 112456899999999999999999989999999999999988765 22222221
Q ss_pred ccCCCCCcchhhHHHHhccccchh
Q psy1134 100 QEVPTDFDIKTLIDTVLNEINFAD 123 (149)
Q Consensus 100 ~~~~~~~d~v~~~~~~l~~~~~~~ 123 (149)
.....+||+|.|. ++|+....|.
T Consensus 146 ~~~~~~fDvIscL-NvLDRc~~P~ 168 (265)
T PF05219_consen 146 QQTDFKFDVISCL-NVLDRCDRPL 168 (265)
T ss_pred hccCCceEEEeeh-hhhhccCCHH
Confidence 1134689999999 9998666553
No 141
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.56 E-value=1.6e-07 Score=77.06 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=38.6
Q ss_pred CCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc
Q psy1134 51 TDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 51 ~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~ 93 (149)
+.+|||+|||+|.+++.++.. +.+|+|+|+|+.+++.|++|..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~ 183 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAI 183 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHH
Confidence 468999999999999998875 5799999999999999998864
No 142
>KOG4300|consensus
Probab=98.55 E-value=1e-07 Score=68.94 Aligned_cols=79 Identities=15% Similarity=-0.011 Sum_probs=56.1
Q ss_pred cCCCCCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhhhcc---cC--------eeecc--CCCCCcchhh
Q psy1134 46 GAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSLYYF---RN--------LCLQE--VPTDFDIKTL 111 (149)
Q Consensus 46 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~~~~---~~--------~~~~~--~~~~~d~v~~ 111 (149)
+.......|||+|||||..--++--. +.+|+++|++++|-+.+.+.+.. .+ .+... ...++|.|++
T Consensus 72 ~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~ 151 (252)
T KOG4300|consen 72 LGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVC 151 (252)
T ss_pred hcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEE
Confidence 33334457999999999988766544 88999999999999998766421 11 11111 3368899988
Q ss_pred HHHHhccccchhHh
Q psy1134 112 IDTVLNEINFADKR 125 (149)
Q Consensus 112 ~~~~l~~~~~~~~~ 125 (149)
. .+|+...++.+.
T Consensus 152 T-lvLCSve~~~k~ 164 (252)
T KOG4300|consen 152 T-LVLCSVEDPVKQ 164 (252)
T ss_pred E-EEEeccCCHHHH
Confidence 7 778877776665
No 143
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.54 E-value=1.9e-07 Score=75.10 Aligned_cols=60 Identities=23% Similarity=0.165 Sum_probs=49.8
Q ss_pred cCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcC--CeEEEEeCChhHHhhhhhhhc
Q psy1134 34 KNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA--KKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 34 ~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~i~~a~~~~~ 93 (149)
.+..-...+...+.+.++.+|||+|||+|..+..+++.. .+|+++|+|+.+++.+++++.
T Consensus 228 iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~ 289 (427)
T PRK10901 228 VQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQ 289 (427)
T ss_pred EECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Confidence 334444556667777889999999999999999999873 599999999999999988864
No 144
>PLN03075 nicotianamine synthase; Provisional
Probab=98.53 E-value=4.5e-07 Score=69.40 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=51.7
Q ss_pred HHHHHHcCCCCCCeEEEEcCCcc-hhHHHHHhc---CCeEEEEeCChhHHhhhhhhhcc-----cCeeecc--------C
Q psy1134 40 QSIVDKGAIRPTDTVLEIGPGTG-NMTVKILEQ---AKKVIACEIDPSCKSYFPSLYYF-----RNLCLQE--------V 102 (149)
Q Consensus 40 ~~~~~~l~~~~~~~vLDiGcG~G-~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~~-----~~~~~~~--------~ 102 (149)
..++..+...++++|+|||||.| ..++.+++. +.+++|+|+|+++++.|++.+.. ..+.... .
T Consensus 113 ~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~ 192 (296)
T PLN03075 113 FDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES 192 (296)
T ss_pred HHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc
Confidence 33444444457899999999966 444444433 56899999999999999987632 1122211 1
Q ss_pred CCCCcchhhHHHHhccc
Q psy1134 103 PTDFDIKTLIDTVLNEI 119 (149)
Q Consensus 103 ~~~~d~v~~~~~~l~~~ 119 (149)
...||.|++. ++.++
T Consensus 193 l~~FDlVF~~--ALi~~ 207 (296)
T PLN03075 193 LKEYDVVFLA--ALVGM 207 (296)
T ss_pred cCCcCEEEEe--ccccc
Confidence 2589999877 55544
No 145
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=2e-07 Score=74.89 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcccCee
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNLC 98 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~~~~ 98 (149)
..+..+..+++...+++++||+=||.|.++++|+++..+|+|+|+++++++.|++|+...++.
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~ 341 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGID 341 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCC
Confidence 445566666677777889999999999999999999999999999999999999997665554
No 146
>PLN02366 spermidine synthase
Probab=98.49 E-value=7.4e-07 Score=68.82 Aligned_cols=44 Identities=23% Similarity=0.412 Sum_probs=39.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhh
Q psy1134 49 RPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~ 92 (149)
.++++||+||||.|.++..+++. ..+|+.+|+++.+++.|++.+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f 135 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFF 135 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhh
Confidence 46789999999999999999987 368999999999999998875
No 147
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.49 E-value=2.7e-07 Score=78.44 Aligned_cols=62 Identities=8% Similarity=0.107 Sum_probs=47.5
Q ss_pred cccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCC-eEEEEeCChhHHhhhhhhhccc
Q psy1134 32 ILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK-KVIACEIDPSCKSYFPSLYYFR 95 (149)
Q Consensus 32 ~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~i~~a~~~~~~~ 95 (149)
++.+.+-.+..+..+. ++++|||+|||||.+++.++..++ +|+++|+|+.+++.|++|+...
T Consensus 522 ~flDqr~~R~~~~~~~--~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~n 584 (702)
T PRK11783 522 LFLDHRPTRRMIGQMA--KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALN 584 (702)
T ss_pred ECHHHHHHHHHHHHhc--CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 3344433334444333 578999999999999999998854 6999999999999999987543
No 148
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.48 E-value=4.3e-07 Score=72.37 Aligned_cols=62 Identities=11% Similarity=0.033 Sum_probs=46.6
Q ss_pred cccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhhhccc
Q psy1134 32 ILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSLYYFR 95 (149)
Q Consensus 32 ~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~~~~~ 95 (149)
++.+++-.+..+..+. ++++|||+|||||.+++.++.. +.+|+++|+|+.+++.|++|+...
T Consensus 204 ~flDqr~~R~~~~~~~--~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~N 266 (396)
T PRK15128 204 YYLDQRDSRLATRRYV--ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELN 266 (396)
T ss_pred cChhhHHHHHHHHHhc--CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 3344444444444443 5789999999999999886655 458999999999999999987543
No 149
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.47 E-value=2.6e-07 Score=67.37 Aligned_cols=60 Identities=25% Similarity=0.200 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhccc
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYYFR 95 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~~~ 95 (149)
+.....+...+...+.++||||||++|+.++.+++. +.+|+++|++++..+.|++++...
T Consensus 31 ~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a 93 (205)
T PF01596_consen 31 PETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA 93 (205)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc
Confidence 333333333333446789999999999999999986 679999999999999999886543
No 150
>PLN02476 O-methyltransferase
Probab=98.45 E-value=7.7e-07 Score=67.65 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=51.5
Q ss_pred cCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhcccCe
Q psy1134 34 KNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYYFRNL 97 (149)
Q Consensus 34 ~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~~~~~ 97 (149)
..+...+.+...+...++++|||||||+|..++.++.. ..+|+++|.+++.++.|+++++..+.
T Consensus 102 v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl 168 (278)
T PLN02476 102 VSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV 168 (278)
T ss_pred cCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 44555565655666667899999999999999999875 56899999999999999998754433
No 151
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.45 E-value=4.8e-07 Score=73.13 Aligned_cols=56 Identities=16% Similarity=0.064 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhc
Q psy1134 38 IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 38 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~ 93 (149)
-.......+.+.++++|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++++.
T Consensus 238 ~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~ 296 (445)
T PRK14904 238 TQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHAS 296 (445)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHH
Confidence 3334445667778899999999999999998875 4689999999999999988864
No 152
>KOG2904|consensus
Probab=98.45 E-value=4.8e-07 Score=68.03 Aligned_cols=57 Identities=14% Similarity=0.281 Sum_probs=46.7
Q ss_pred HHHHHHHHHHc---CCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhh
Q psy1134 36 PLIIQSIVDKG---AIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 36 ~~~~~~~~~~l---~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~ 92 (149)
++|.+++...+ ...++..+||+|||+|.+++.++.. ...|+++|.|+.++..|.+|.
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~ 192 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENA 192 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHH
Confidence 55666665554 4446678999999999999999877 678999999999999998874
No 153
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.44 E-value=5.3e-07 Score=56.65 Aligned_cols=37 Identities=24% Similarity=0.481 Sum_probs=33.9
Q ss_pred eEEEEcCCcchhHHHHHh-cCCeEEEEeCChhHHhhhh
Q psy1134 53 TVLEIGPGTGNMTVKILE-QAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 53 ~vLDiGcG~G~~~~~l~~-~~~~v~giD~s~~~i~~a~ 89 (149)
+++|+|||+|..+..+++ .+.+++++|++++++..++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 38 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELAR 38 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence 489999999999999988 4789999999999999887
No 154
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.44 E-value=4.6e-07 Score=72.86 Aligned_cols=59 Identities=20% Similarity=0.137 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc
Q psy1134 35 NPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 35 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~ 93 (149)
+..-...+...+.+.++.+|||+|||+|..+..+++. ..+|+|+|+|+++++.+++++.
T Consensus 223 Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~ 283 (426)
T TIGR00563 223 QDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLK 283 (426)
T ss_pred ECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3344556666778888999999999999999999987 3799999999999999988864
No 155
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.44 E-value=5e-07 Score=68.32 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=44.2
Q ss_pred HHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhc
Q psy1134 43 VDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 43 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~ 93 (149)
...+.+.++++|||+|||+|..+..+++. ...|+++|+++.+++.+++++.
T Consensus 64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~ 117 (264)
T TIGR00446 64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANIN 117 (264)
T ss_pred HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 34567778899999999999999999886 3589999999999999988864
No 156
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.43 E-value=5.3e-07 Score=64.64 Aligned_cols=39 Identities=36% Similarity=0.607 Sum_probs=32.9
Q ss_pred cCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhH
Q psy1134 46 GAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSC 84 (149)
Q Consensus 46 l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~ 84 (149)
..+.++++|||+|||+|.++..+++. ..+|+|+|+|+.+
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~ 69 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK 69 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence 34457889999999999999998876 3479999999965
No 157
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.43 E-value=5e-07 Score=72.99 Aligned_cols=58 Identities=21% Similarity=0.109 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhc
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~ 93 (149)
......+...+.+.++++|||+|||+|..+..+++. ..+|+++|+++.+++.+++++.
T Consensus 236 d~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~ 296 (444)
T PRK14902 236 DESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAK 296 (444)
T ss_pred ChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 334445555677778889999999999999999886 4689999999999999988764
No 158
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.42 E-value=1e-06 Score=64.94 Aligned_cols=53 Identities=25% Similarity=0.410 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhh
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~ 89 (149)
+.+.+.+ ..+...++.+||..|||.|.-...|+++|.+|+|+|+|+.+++.+.
T Consensus 24 p~L~~~~-~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~ 76 (218)
T PF05724_consen 24 PALVEYL-DSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAF 76 (218)
T ss_dssp HHHHHHH-HHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHH
T ss_pred HHHHHHH-HhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHH
Confidence 4444444 3356567789999999999999999999999999999999999983
No 159
>PRK01581 speE spermidine synthase; Validated
Probab=98.41 E-value=9.4e-07 Score=69.35 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=37.8
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhh
Q psy1134 49 RPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~ 90 (149)
..+++||++|||+|..+..+++. ..+|++||+++++++.|++
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN 192 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Confidence 45779999999999999998887 3799999999999999986
No 160
>KOG2899|consensus
Probab=98.40 E-value=4.2e-07 Score=67.26 Aligned_cols=44 Identities=20% Similarity=0.368 Sum_probs=39.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~ 93 (149)
.++.+|||||.+|.+|..+++. ...|+|+||++..|+.|+++.+
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence 5778999999999999999998 5689999999999999998853
No 161
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.40 E-value=6.8e-07 Score=72.01 Aligned_cols=58 Identities=19% Similarity=0.097 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhc
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~ 93 (149)
..-...+...+.+.++.+|||+|||+|..|.++++. +.+|+++|+|+.+++.+++++.
T Consensus 223 d~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~ 283 (431)
T PRK14903 223 GESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAK 283 (431)
T ss_pred CHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHH
Confidence 333444555677778999999999999999999886 4699999999999999998864
No 162
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.39 E-value=1.1e-06 Score=66.66 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=38.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhh
Q psy1134 49 RPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~ 92 (149)
.++++||+||||+|.++..+++. ..+|+++|+++++++.+++.+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~ 116 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFL 116 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHh
Confidence 35679999999999999988877 468999999999999998865
No 163
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.38 E-value=1.2e-06 Score=64.80 Aligned_cols=97 Identities=25% Similarity=0.222 Sum_probs=66.4
Q ss_pred CeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhcccCe---eeccCC-----CCCcchhhHHHHhccccc
Q psy1134 52 DTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYYFRNL---CLQEVP-----TDFDIKTLIDTVLNEINF 121 (149)
Q Consensus 52 ~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~~~~~---~~~~~~-----~~~d~v~~~~~~l~~~~~ 121 (149)
..+||||||.|.+...+|++ ...++|||+...-+..|.+.+...++ .+.... ..+..--+++.+.-.+|+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 57999999999999999998 56899999999999999877644433 333211 011111122233346788
Q ss_pred hh--Hhh--ccCChhhHHHHHHhhhccC--ccc
Q psy1134 122 AD--KRA--RTMDLDDFVLLLATFNKHG--IHF 148 (149)
Q Consensus 122 ~~--~~~--~~~~~~~~~~~~~~~~~~~--~~~ 148 (149)
|+ ++. +++-..+|+.+++..-+.| +||
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~ 162 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF 162 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence 77 333 5588899999988766665 665
No 164
>KOG2187|consensus
Probab=98.38 E-value=4.5e-07 Score=73.21 Aligned_cols=77 Identities=18% Similarity=0.279 Sum_probs=61.5
Q ss_pred cccccccccccccCHHHHHHHHH----HcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcccCe
Q psy1134 22 IQFNKDFGQHILKNPLIIQSIVD----KGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNL 97 (149)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~~~~~----~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~~~ 97 (149)
..++.+-+..|-.+...++.+.+ ++....++.+||+.||||.+++.+++...+|+|||+++..++.|+.|+...++
T Consensus 351 ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngi 430 (534)
T KOG2187|consen 351 LTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGI 430 (534)
T ss_pred eEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCc
Confidence 45666666667667666655555 44555678899999999999999999999999999999999999998765554
Q ss_pred e
Q psy1134 98 C 98 (149)
Q Consensus 98 ~ 98 (149)
.
T Consensus 431 s 431 (534)
T KOG2187|consen 431 S 431 (534)
T ss_pred c
Confidence 4
No 165
>PTZ00146 fibrillarin; Provisional
Probab=98.38 E-value=5.8e-07 Score=68.61 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=35.2
Q ss_pred HcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHH
Q psy1134 45 KGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCK 85 (149)
Q Consensus 45 ~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i 85 (149)
.+++.++.+|||+|||+|.++.++++. ...|+++|+|++|.
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~ 170 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG 170 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH
Confidence 356678889999999999999999998 25899999998744
No 166
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=4.9e-07 Score=67.30 Aligned_cols=57 Identities=25% Similarity=0.237 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhcc
Q psy1134 38 IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYYF 94 (149)
Q Consensus 38 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~~ 94 (149)
=...+..++.+.++++|||.|.|+|.++..|+.. ..+|+++|+.++.++.|++|+..
T Consensus 82 D~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~ 141 (256)
T COG2519 82 DAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE 141 (256)
T ss_pred CHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH
Confidence 3455677888899999999999999999999975 46999999999999999999754
No 167
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.37 E-value=9.3e-07 Score=67.79 Aligned_cols=57 Identities=26% Similarity=0.412 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhh
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~ 92 (149)
|-+...+++.+.+.++..+||.+||.|..+..+++. ..+|+|+|.++.+++.+++++
T Consensus 5 pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L 64 (296)
T PRK00050 5 PVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRL 64 (296)
T ss_pred cccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhh
Confidence 556778888888888899999999999999999988 368999999999999998765
No 168
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.36 E-value=9.3e-07 Score=71.27 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhc
Q psy1134 35 NPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 35 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~ 93 (149)
+......+...+.+.++++|||+|||+|..+..+++. ..+|+++|+++.+++.+++++.
T Consensus 237 qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~ 298 (434)
T PRK14901 237 QDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQ 298 (434)
T ss_pred ECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHH
Confidence 3444455556677778999999999999999999886 3589999999999999988764
No 169
>PLN02672 methionine S-methyltransferase
Probab=98.34 E-value=5.2e-07 Score=79.15 Aligned_cols=44 Identities=30% Similarity=0.432 Sum_probs=39.5
Q ss_pred CCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhcc
Q psy1134 51 TDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYYF 94 (149)
Q Consensus 51 ~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~~ 94 (149)
+++|||+|||+|.+++.+++. ..+|+|+|+|+.+++.|++|...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~ 164 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL 164 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 468999999999999999887 46899999999999999888753
No 170
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.34 E-value=1.6e-06 Score=62.83 Aligned_cols=93 Identities=20% Similarity=0.216 Sum_probs=57.1
Q ss_pred eEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc---ccCeeeccCCCCCcch-----hhHHHHhccccch
Q psy1134 53 TVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY---FRNLCLQEVPTDFDIK-----TLIDTVLNEINFA 122 (149)
Q Consensus 53 ~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~---~~~~~~~~~~~~~d~v-----~~~~~~l~~~~~~ 122 (149)
.+||||||.|.+...+|+. ...++|+|++...+..+.++.. ..++.........-+. -+++.+.-.+|+|
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 8999999999999999988 6789999999999999877653 3444433321111000 1122233357776
Q ss_pred h--H--hhccCChhhHHHHHHhhhccC
Q psy1134 123 D--K--RARTMDLDDFVLLLATFNKHG 145 (149)
Q Consensus 123 ~--~--~~~~~~~~~~~~~~~~~~~~~ 145 (149)
+ + ..+++-..+|+.++...-+.|
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~g 126 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPG 126 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEE
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCC
Confidence 5 2 335577788888887755555
No 171
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.33 E-value=4.3e-06 Score=58.74 Aligned_cols=79 Identities=22% Similarity=0.238 Sum_probs=64.2
Q ss_pred HHHHHhhcccccccccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhh
Q psy1134 15 RTVWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 15 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~ 91 (149)
++++++...++ ..|.---+.+-.+++|.+.+.+..+..|||+|.|||.+|..+.++ ...++++|.|++.+..+++.
T Consensus 14 ~F~k~wi~~Pr-tVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~ 92 (194)
T COG3963 14 SFFKGWIDNPR-TVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL 92 (194)
T ss_pred HHHHHHhcCCc-eeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh
Confidence 45566665554 344444456778999999999999999999999999999999888 45799999999999999887
Q ss_pred hcc
Q psy1134 92 YYF 94 (149)
Q Consensus 92 ~~~ 94 (149)
+.-
T Consensus 93 ~p~ 95 (194)
T COG3963 93 YPG 95 (194)
T ss_pred CCC
Confidence 643
No 172
>PRK03612 spermidine synthase; Provisional
Probab=98.32 E-value=1.1e-06 Score=72.28 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=38.8
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-C-CeEEEEeCChhHHhhhhhh
Q psy1134 49 RPTDTVLEIGPGTGNMTVKILEQ-A-KKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~giD~s~~~i~~a~~~ 91 (149)
.++++|||||||+|..+..++++ . .+|+++|+|+++++.++++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~ 340 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTS 340 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhC
Confidence 45789999999999999999887 3 6999999999999999984
No 173
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.30 E-value=2.3e-06 Score=58.73 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=39.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHh-----c-CCeEEEEeCChhHHhhhhhhh
Q psy1134 49 RPTDTVLEIGPGTGNMTVKILE-----Q-AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~-----~-~~~v~giD~s~~~i~~a~~~~ 92 (149)
.+..+|+|+|||-|+++..|+. . +.+|+|+|.++..++.++++.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~ 73 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRA 73 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHH
Confidence 4677899999999999999998 4 789999999999999987764
No 174
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.29 E-value=2.4e-06 Score=64.01 Aligned_cols=59 Identities=25% Similarity=0.303 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhcc
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYYF 94 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~~ 94 (149)
+.=+..++.++.+.+|++|||.|.|+|.++..|++. ..+|+..|+.++.++.|+++++.
T Consensus 26 pkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~ 87 (247)
T PF08704_consen 26 PKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER 87 (247)
T ss_dssp HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred CchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH
Confidence 455566888999999999999999999999999987 46999999999999999999754
No 175
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.28 E-value=2.1e-06 Score=63.07 Aligned_cols=61 Identities=13% Similarity=0.046 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhcccC
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYYFRN 96 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~~~~ 96 (149)
+.....+.-.+...++++|||||+++|+.++.++.. ..++++||.++++++.|++++...+
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag 108 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG 108 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC
Confidence 444444444555567899999999999999999987 4689999999999999999975443
No 176
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.27 E-value=2e-06 Score=61.11 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=36.7
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhcc
Q psy1134 48 IRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYYF 94 (149)
Q Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~~ 94 (149)
..++++|||+|||+|..++.++.. +.+|+..|.++ .++.++.|.+.
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~ 90 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIEL 90 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHT
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHh
Confidence 447889999999999999999998 77999999999 88888877543
No 177
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.26 E-value=3.9e-06 Score=59.94 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=49.0
Q ss_pred cCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCe---------EEEEeCChhHHhhhhhhhcccC
Q psy1134 34 KNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKK---------VIACEIDPSCKSYFPSLYYFRN 96 (149)
Q Consensus 34 ~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~---------v~giD~s~~~i~~a~~~~~~~~ 96 (149)
..+.++..|++...+.++..|||.-||+|.+.+..+-. ... ++|+|+++++++.|++|+...+
T Consensus 12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag 85 (179)
T PF01170_consen 12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG 85 (179)
T ss_dssp S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc
Confidence 45888999999999989999999999999999887655 333 8899999999999999975433
No 178
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.21 E-value=2.6e-06 Score=61.14 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=49.9
Q ss_pred cCHHHHHHHHHHcCCC--CCCeEEEEcCCcchhHHHHHhcC-CeEEEEeCChhHHhhhhhhhc
Q psy1134 34 KNPLIIQSIVDKGAIR--PTDTVLEIGPGTGNMTVKILEQA-KKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 34 ~~~~~~~~~~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~i~~a~~~~~ 93 (149)
...++++.+++.+... ++.++||+-||||.+++..+.+| .+|+.||.|+..++.+++|++
T Consensus 24 T~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~ 86 (183)
T PF03602_consen 24 TTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLE 86 (183)
T ss_dssp SSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHH
Confidence 4478899999988764 78999999999999999888775 689999999999999999864
No 179
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.21 E-value=2.2e-06 Score=70.61 Aligned_cols=66 Identities=17% Similarity=0.290 Sum_probs=52.9
Q ss_pred cccccccccCHHHHHHHHHHcCCC-------CCCeEEEEcCCcchhHHHHHhcC----------CeEEEEeCChhHHhhh
Q psy1134 26 KDFGQHILKNPLIIQSIVDKGAIR-------PTDTVLEIGPGTGNMTVKILEQA----------KKVIACEIDPSCKSYF 88 (149)
Q Consensus 26 ~~~g~~~~~~~~~~~~~~~~l~~~-------~~~~vLDiGcG~G~~~~~l~~~~----------~~v~giD~s~~~i~~a 88 (149)
++.|++| +++.+.+.|++.+... .+.+|||+|||+|.+...+++.. ..++|+|+++..+..+
T Consensus 1 K~~Gqfy-TP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a 79 (524)
T TIGR02987 1 KAYGTFF-TPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRA 79 (524)
T ss_pred CCCcccC-CcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHH
Confidence 3567766 8899999999876322 34589999999999999987651 4689999999999999
Q ss_pred hhhh
Q psy1134 89 PSLY 92 (149)
Q Consensus 89 ~~~~ 92 (149)
+.++
T Consensus 80 ~~~l 83 (524)
T TIGR02987 80 KKLL 83 (524)
T ss_pred HHHH
Confidence 8774
No 180
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.18 E-value=7.2e-06 Score=59.83 Aligned_cols=72 Identities=25% Similarity=0.406 Sum_probs=49.2
Q ss_pred HHHhhcccccccccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhh
Q psy1134 17 VWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~ 91 (149)
++.|...-..-+|.. .......++..+.+.+++..+|||||.|......+-. ..+++|||+.+...+.|+..
T Consensus 12 l~~y~~~s~~~YGEi---~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~ 85 (205)
T PF08123_consen 12 LNKYKSFSSETYGEI---SPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEEL 85 (205)
T ss_dssp GGCSTTTCCCCGGGC---HHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHH
T ss_pred HhccccCCCcceeec---CHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHH
Confidence 333443444456653 3567777888899888999999999999998887655 45699999999999888653
No 181
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.18 E-value=1e-06 Score=64.97 Aligned_cols=104 Identities=19% Similarity=0.252 Sum_probs=70.4
Q ss_pred HHcCCCCCCeEEEEcCCcchhHHHHHhcCC-eEEEEeCChhHHhhhhhhhccc-----Ceeecc-----CCCCCcchhhH
Q psy1134 44 DKGAIRPTDTVLEIGPGTGNMTVKILEQAK-KVIACEIDPSCKSYFPSLYYFR-----NLCLQE-----VPTDFDIKTLI 112 (149)
Q Consensus 44 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~i~~a~~~~~~~-----~~~~~~-----~~~~~d~v~~~ 112 (149)
+...+.++++|||-+.|-|+.++..+++|+ +|+.+|.+|+.++.|.-|-.-. .+.+.. ....|+.. ++
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~-sf 206 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDE-SF 206 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcc-cc
Confidence 344556799999999999999999999987 9999999999999997663211 122111 11222222 23
Q ss_pred HHHhccccchhHhhccCChhhHHHHHHhhhccCccc
Q psy1134 113 DTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHF 148 (149)
Q Consensus 113 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
+.++|+.|.-..+...+++.-|..++--+++.|..|
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 344566776666666666666666677777777444
No 182
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.17 E-value=4.3e-06 Score=65.21 Aligned_cols=93 Identities=19% Similarity=0.211 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhhhc---------cc--Ceeec--------------cCC
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSLYY---------FR--NLCLQ--------------EVP 103 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~~~---------~~--~~~~~--------------~~~ 103 (149)
++.+|||+|||-|.-...-... ...++|+|+++..|+.|++++. .. ..... ..+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6779999999977766666555 6899999999999999998861 00 00000 011
Q ss_pred --CCCcchhhHHHHhccccchhHhhccCChhhHHHHHHhhhccCccc
Q psy1134 104 --TDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHF 148 (149)
Q Consensus 104 --~~~d~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
..||+|.|- -.+|+....+.. ...++.-+....+.|..|
T Consensus 142 ~~~~FDvVScQ-FalHY~Fese~~-----ar~~l~Nvs~~Lk~GG~F 182 (331)
T PF03291_consen 142 RSRKFDVVSCQ-FALHYAFESEEK-----ARQFLKNVSSLLKPGGYF 182 (331)
T ss_dssp TTS-EEEEEEE-S-GGGGGSSHHH-----HHHHHHHHHHTEEEEEEE
T ss_pred cCCCcceeehH-HHHHHhcCCHHH-----HHHHHHHHHHhcCCCCEE
Confidence 378888766 778887766655 344666666666666444
No 183
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.17 E-value=4.5e-06 Score=66.31 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=48.5
Q ss_pred cCHHHHHHHHHHcCCC-CCCeEEEEcCCcchhHHHHHhc-C-CeEEEEeCChhHHhhhhhhhcccCe
Q psy1134 34 KNPLIIQSIVDKGAIR-PTDTVLEIGPGTGNMTVKILEQ-A-KKVIACEIDPSCKSYFPSLYYFRNL 97 (149)
Q Consensus 34 ~~~~~~~~~~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~-~-~~v~giD~s~~~i~~a~~~~~~~~~ 97 (149)
.+..+...+.+.+... .+.+|||++||+|..++.++.. + .+|+++|+|+.+++.+++|+...++
T Consensus 40 ~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~ 106 (382)
T PRK04338 40 LNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL 106 (382)
T ss_pred chhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 3345555555555432 3468999999999999999876 3 4899999999999999998765443
No 184
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.16 E-value=4.4e-06 Score=66.33 Aligned_cols=64 Identities=13% Similarity=0.092 Sum_probs=51.2
Q ss_pred cccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCC-eEEEEeCChhHHhhhhhhhcccCe
Q psy1134 32 ILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK-KVIACEIDPSCKSYFPSLYYFRNL 97 (149)
Q Consensus 32 ~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~i~~a~~~~~~~~~ 97 (149)
|+.+.+-.+..+...- +|++||++-|=||.++.+.+..|+ +||+||+|..++++|++|+...++
T Consensus 201 fFlDqR~~R~~l~~~~--~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~ 265 (393)
T COG1092 201 FFLDQRDNRRALGELA--AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGL 265 (393)
T ss_pred eeHHhHHHHHHHhhhc--cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCC
Confidence 4455444444444433 399999999999999999998876 999999999999999999876554
No 185
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.13 E-value=8.3e-06 Score=61.15 Aligned_cols=61 Identities=15% Similarity=-0.016 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhccc
Q psy1134 35 NPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYYFR 95 (149)
Q Consensus 35 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~~~ 95 (149)
.+.....+...+...+.++|||||+++|+.++.++.. ..+|+++|.+++..+.|++++...
T Consensus 64 ~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a 127 (247)
T PLN02589 64 SADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA 127 (247)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence 3555555555555567889999999999999999875 569999999999999999887543
No 186
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.13 E-value=3.8e-06 Score=59.07 Aligned_cols=42 Identities=29% Similarity=0.283 Sum_probs=36.5
Q ss_pred CeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhc
Q psy1134 52 DTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 52 ~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~ 93 (149)
+.|+|+.||.|..++.+|+...+|++||+++..++.|+.|++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~ 42 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAE 42 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHH
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHH
Confidence 369999999999999999999999999999999999999864
No 187
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.11 E-value=4.3e-06 Score=57.01 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=36.3
Q ss_pred eEEEEcCCcchhHHHHHhcCC--eEEEEeCChhHHhhhhhhhc
Q psy1134 53 TVLEIGPGTGNMTVKILEQAK--KVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 53 ~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~i~~a~~~~~ 93 (149)
.+||+|||+|.++..+++.+. +|+++|+++.+.+.++++..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~ 43 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVK 43 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHH
Confidence 489999999999999998843 69999999999999988754
No 188
>KOG3191|consensus
Probab=98.08 E-value=1.2e-05 Score=57.20 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=39.2
Q ss_pred HHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhh
Q psy1134 44 DKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 44 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~ 92 (149)
..+.....+.++|||||+|..+-+|++. +..+.++|+||.+++...+.+
T Consensus 37 ~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA 88 (209)
T KOG3191|consen 37 AELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETA 88 (209)
T ss_pred HHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHH
Confidence 3344345788999999999999999987 356789999999999865543
No 189
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.05 E-value=7e-06 Score=64.01 Aligned_cols=82 Identities=17% Similarity=0.266 Sum_probs=60.3
Q ss_pred HHHHhhcccccccccccccCHHHHH--HHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCe-EEEEeCChhHHhhhhhhh
Q psy1134 16 TVWKICIQFNKDFGQHILKNPLIIQ--SIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKK-VIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 16 ~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-v~giD~s~~~i~~a~~~~ 92 (149)
..++++..+.......|+......+ +++++.. .|++|||.-+|.|.++++++..+.. |+++|+||..++.+++|+
T Consensus 154 ihrE~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~--~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi 231 (341)
T COG2520 154 IHRENGCRFKVDVAKVYFSPRLSTERARVAELVK--EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENI 231 (341)
T ss_pred EEecCCEEEEEchHHeEECCCchHHHHHHHhhhc--CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHH
Confidence 3456666666655555655533333 3444444 5999999999999999999999765 999999999999999997
Q ss_pred cccCeee
Q psy1134 93 YFRNLCL 99 (149)
Q Consensus 93 ~~~~~~~ 99 (149)
.......
T Consensus 232 ~LN~v~~ 238 (341)
T COG2520 232 RLNKVEG 238 (341)
T ss_pred HhcCccc
Confidence 6554443
No 190
>KOG3987|consensus
Probab=97.99 E-value=3.3e-06 Score=61.33 Aligned_cols=96 Identities=15% Similarity=0.214 Sum_probs=67.9
Q ss_pred cccccccccCHHHHHHHHHHcCCC---CCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcccCee-ecc
Q psy1134 26 KDFGQHILKNPLIIQSIVDKGAIR---PTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNLC-LQE 101 (149)
Q Consensus 26 ~~~g~~~~~~~~~~~~~~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~~~~-~~~ 101 (149)
.-.|..|...++-.++++..-.+. .+.++||+|+|.|-.+...+..-.+|++.|+|..|....++. .+.-+. ..|
T Consensus 85 lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk-~ynVl~~~ew 163 (288)
T KOG3987|consen 85 LGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK-NYNVLTEIEW 163 (288)
T ss_pred cccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc-CCceeeehhh
Confidence 345666766666666665544222 357899999999999999999888999999999999998654 222222 233
Q ss_pred --CCCCCcchhhHHHHhccccchh
Q psy1134 102 --VPTDFDIKTLIDTVLNEINFAD 123 (149)
Q Consensus 102 --~~~~~d~v~~~~~~l~~~~~~~ 123 (149)
..-++|+|.|+ ++++...++.
T Consensus 164 ~~t~~k~dli~cl-NlLDRc~~p~ 186 (288)
T KOG3987|consen 164 LQTDVKLDLILCL-NLLDRCFDPF 186 (288)
T ss_pred hhcCceeehHHHH-HHHHhhcChH
Confidence 33578999998 7777555443
No 191
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.98 E-value=5.3e-05 Score=57.67 Aligned_cols=99 Identities=16% Similarity=0.049 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhcccC-eeec----------c
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYYFRN-LCLQ----------E 101 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~~~~-~~~~----------~ 101 (149)
..+...+...++.-.+.+|||+|||.|..+..+.+. -.+++++|.|+.|++.++..+.... .... .
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL 98 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc
Confidence 345556666666557889999999999877666554 4689999999999999876542111 1100 0
Q ss_pred CCCCCcchhhHHHHhccccchhHhhccCChhhHHHHHHhhh
Q psy1134 102 VPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFN 142 (149)
Q Consensus 102 ~~~~~d~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (149)
.....|+|++. .+|.+++. .. ...++..+|...
T Consensus 99 ~~~~~DLvi~s-~~L~EL~~-~~------r~~lv~~LW~~~ 131 (274)
T PF09243_consen 99 PFPPDDLVIAS-YVLNELPS-AA------RAELVRSLWNKT 131 (274)
T ss_pred cCCCCcEEEEe-hhhhcCCc-hH------HHHHHHHHHHhc
Confidence 11234888766 89988886 32 245666676643
No 192
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.94 E-value=1.3e-05 Score=65.96 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=63.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhcccCeeecc-CCCCCcch------hhHHHHhcccc
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYYFRNLCLQE-VPTDFDIK------TLIDTVLNEIN 120 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~-~~~~~d~v------~~~~~~l~~~~ 120 (149)
.+..+||||||.|-++..+|+. ...++|+|++..-+..+.+.....++.... .......+ -+++.+.-++|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 3557999999999999999998 568999999999888876664333322111 11111100 11323344788
Q ss_pred chh----HhhccCChhhHHHHHHhhhccC
Q psy1134 121 FAD----KRARTMDLDDFVLLLATFNKHG 145 (149)
Q Consensus 121 ~~~----~~~~~~~~~~~~~~~~~~~~~~ 145 (149)
+|+ ++.+++-..+|+.++...-+.|
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~g 455 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDN 455 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCC
Confidence 888 3355577788998887766655
No 193
>PRK11524 putative methyltransferase; Provisional
Probab=97.92 E-value=4.2e-05 Score=58.46 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhc
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~ 93 (149)
..+.++++.... .+|+.|||.-||+|..+....+.+.+.+|+|+++++++.|++++.
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 557777777665 579999999999999999988889999999999999999998864
No 194
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.91 E-value=3.5e-05 Score=56.02 Aligned_cols=56 Identities=25% Similarity=0.339 Sum_probs=44.8
Q ss_pred cCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhh
Q psy1134 34 KNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 34 ~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
.+..+.++++.... .+++.|||.-||+|..+....+.+.+.+|+|+++.+++.|++
T Consensus 176 kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 176 KPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 34678888887765 478999999999999999988889999999999999998863
No 195
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.91 E-value=5.8e-05 Score=54.13 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=54.0
Q ss_pred cCHHHHHHHHHHcCC--CCCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhhhcc
Q psy1134 34 KNPLIIQSIVDKGAI--RPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSLYYF 94 (149)
Q Consensus 34 ~~~~~~~~~~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~~~~ 94 (149)
+..++++.+++.+.. ..+.++||+-+|+|.+++..+.+ +.+++.||.|.+.+..+++|...
T Consensus 25 T~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~ 88 (187)
T COG0742 25 TTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKA 88 (187)
T ss_pred CchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHH
Confidence 447899999999976 58999999999999999998888 56899999999999999998643
No 196
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.90 E-value=7.9e-06 Score=58.54 Aligned_cols=47 Identities=28% Similarity=0.375 Sum_probs=41.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcccC
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRN 96 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~~ 96 (149)
..+.+.|+|+|+|.++...+..+.+|+++|.+|.....|.+|+...+
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g 78 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPG 78 (252)
T ss_pred hhhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCC
Confidence 34689999999999999988888999999999999999999975433
No 197
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.87 E-value=3.6e-05 Score=57.19 Aligned_cols=80 Identities=15% Similarity=0.242 Sum_probs=55.0
Q ss_pred HHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhh--hcccCeee-ccCCCCCcchhhHHH
Q psy1134 40 QSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSL--YYFRNLCL-QEVPTDFDIKTLIDT 114 (149)
Q Consensus 40 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~--~~~~~~~~-~~~~~~~d~v~~~~~ 114 (149)
..+....++...++|+|||+|+|.++..++++ +.+++..|+ |..++.+++. ..+...+. ...+. +|.+++. +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~~~rv~~~~gd~f~~~P~-~D~~~l~-~ 166 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKEADRVEFVPGDFFDPLPV-ADVYLLR-H 166 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHHTTTEEEEES-TTTCCSS-ESEEEEE-S
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-HhhhhccccccccccccccHHhhhcc-ccceeee-h
Confidence 45556677777889999999999999999988 679999997 8899888762 11111111 22445 7877665 8
Q ss_pred Hhccccch
Q psy1134 115 VLNEINFA 122 (149)
Q Consensus 115 ~l~~~~~~ 122 (149)
+|++.++.
T Consensus 167 vLh~~~d~ 174 (241)
T PF00891_consen 167 VLHDWSDE 174 (241)
T ss_dssp SGGGS-HH
T ss_pred hhhhcchH
Confidence 88876654
No 198
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.80 E-value=2.3e-05 Score=63.44 Aligned_cols=41 Identities=27% Similarity=0.447 Sum_probs=32.6
Q ss_pred CCeEEEEcCCcchhHHHHHhcC------CeEEEEeCChhHHhhhhhh
Q psy1134 51 TDTVLEIGPGTGNMTVKILEQA------KKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 51 ~~~vLDiGcG~G~~~~~l~~~~------~~v~giD~s~~~i~~a~~~ 91 (149)
++.|+|+|||+|.++...++.+ .+|++||-|+.++..++++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~ 233 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKR 233 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHH
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHH
Confidence 5689999999999998876663 5999999999988776543
No 199
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.77 E-value=0.00011 Score=53.48 Aligned_cols=102 Identities=18% Similarity=0.135 Sum_probs=61.0
Q ss_pred HHHHHHHHH-HcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc---c------cCeeec---
Q psy1134 36 PLIIQSIVD-KGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY---F------RNLCLQ--- 100 (149)
Q Consensus 36 ~~~~~~~~~-~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~---~------~~~~~~--- 100 (149)
+.-+-.++. .++ ..+.+|||||||||..+.+++++ .-...-.|+++......+.... . ..+++.
T Consensus 11 k~pIl~vL~~~l~-~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~ 89 (204)
T PF06080_consen 11 KDPILEVLKQYLP-DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPP 89 (204)
T ss_pred HhHHHHHHHHHhC-ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCC
Confidence 333333444 444 33436999999999999999998 4567788999888533332211 0 111111
Q ss_pred c--------CCCCCcchhhHHHHhccccchhHhhccCChhhHHHHHHhhhccC
Q psy1134 101 E--------VPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHG 145 (149)
Q Consensus 101 ~--------~~~~~d~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (149)
| ....+|.|+++ +++|-++...- ..-|...-..+++.|
T Consensus 90 w~~~~~~~~~~~~~D~i~~~-N~lHI~p~~~~------~~lf~~a~~~L~~gG 135 (204)
T PF06080_consen 90 WPWELPAPLSPESFDAIFCI-NMLHISPWSAV------EGLFAGAARLLKPGG 135 (204)
T ss_pred CccccccccCCCCcceeeeh-hHHHhcCHHHH------HHHHHHHHHhCCCCC
Confidence 1 13489999999 88886665421 233444445555555
No 200
>PRK13699 putative methylase; Provisional
Probab=97.73 E-value=0.00014 Score=53.89 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhc
Q psy1134 35 NPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 35 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~ 93 (149)
+..+.++++.... .+|+.|||.-||+|..+....+.+.+++|+|+++++.+.+.+++.
T Consensus 149 P~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 149 PVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred cHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHH
Confidence 3567777776555 478899999999999999988889999999999999999988753
No 201
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.70 E-value=0.00021 Score=54.55 Aligned_cols=89 Identities=18% Similarity=0.171 Sum_probs=62.7
Q ss_pred CCeEEEEcCCcchhHHHHHhcC--CeEEEEeCChhHHhhhhhhhcccC-------eeecc---------CCCCCcchhhH
Q psy1134 51 TDTVLEIGPGTGNMTVKILEQA--KKVIACEIDPSCKSYFPSLYYFRN-------LCLQE---------VPTDFDIKTLI 112 (149)
Q Consensus 51 ~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~i~~a~~~~~~~~-------~~~~~---------~~~~~d~v~~~ 112 (149)
.++||-||-|.|..++.+.+.. .+++.||+++..++.+++.+.... ..+.. .+..||+|++-
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 4699999999999999999984 799999999999999998753211 11111 22367776532
Q ss_pred HHHhccccchhHhhccCChhhHHHHHHhhhccC
Q psy1134 113 DTVLNEINFADKRARTMDLDDFVLLLATFNKHG 145 (149)
Q Consensus 113 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (149)
..++......+...+|.+.+...-+.+
T Consensus 157 ------~tdp~gp~~~Lft~eFy~~~~~~L~~~ 183 (282)
T COG0421 157 ------STDPVGPAEALFTEEFYEGCRRALKED 183 (282)
T ss_pred ------CCCCCCcccccCCHHHHHHHHHhcCCC
Confidence 333445566677888888776544444
No 202
>KOG2915|consensus
Probab=97.70 E-value=8.6e-05 Score=56.03 Aligned_cols=90 Identities=19% Similarity=0.231 Sum_probs=64.8
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhcccCe----eecc---CCCCCcc
Q psy1134 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYYFRNL----CLQE---VPTDFDI 108 (149)
Q Consensus 39 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~~~~~----~~~~---~~~~~d~ 108 (149)
+..+..++...+|.+|+|-|.|+|.++..+++. ..+++..|+.+...+.|.+.++...+ .+.. +..-|+.
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 345677889999999999999999999999998 37999999999999999888764432 2221 2334444
Q ss_pred -hhhHHHHhccccchhHhhcc
Q psy1134 109 -KTLIDTVLNEINFADKRART 128 (149)
Q Consensus 109 -v~~~~~~l~~~~~~~~~~~~ 128 (149)
....+.++-++|.|+.+...
T Consensus 174 ks~~aDaVFLDlPaPw~AiPh 194 (314)
T KOG2915|consen 174 KSLKADAVFLDLPAPWEAIPH 194 (314)
T ss_pred cccccceEEEcCCChhhhhhh
Confidence 33344555567766665433
No 203
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.64 E-value=0.00025 Score=56.01 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCC-----------------------------------------
Q psy1134 35 NPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK----------------------------------------- 73 (149)
Q Consensus 35 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~----------------------------------------- 73 (149)
.+.++..|+....+.++..++|.-||+|.+.+..|-.+.
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 367888888888988888999999999999998776642
Q ss_pred eEEEEeCChhHHhhhhhhhcccC
Q psy1134 74 KVIACEIDPSCKSYFPSLYYFRN 96 (149)
Q Consensus 74 ~v~giD~s~~~i~~a~~~~~~~~ 96 (149)
.++|+|+++.+++.|+.|++..+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AG 278 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAG 278 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcC
Confidence 37799999999999999975443
No 204
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.63 E-value=8e-05 Score=58.10 Aligned_cols=38 Identities=18% Similarity=0.340 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhh
Q psy1134 49 RPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSY 87 (149)
Q Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~ 87 (149)
.+++++||+||++|.+|..++++|.+|++||.++ |...
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~~~ 247 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MAQS 247 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cCHh
Confidence 4788999999999999999999999999999665 4443
No 205
>KOG1661|consensus
Probab=97.62 E-value=5.5e-05 Score=55.05 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=50.4
Q ss_pred cCHHHHHHHHHHcC--CCCCCeEEEEcCCcchhHHHHHhc----CCeEEEEeCChhHHhhhhhhhc
Q psy1134 34 KNPLIIQSIVDKGA--IRPTDTVLEIGPGTGNMTVKILEQ----AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 34 ~~~~~~~~~~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~i~~a~~~~~ 93 (149)
..+.+-..+++.|. ..+|-+.||+|.|||+++-.++.- +..++|||.-++.++.+++++.
T Consensus 64 SAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~ 129 (237)
T KOG1661|consen 64 SAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLD 129 (237)
T ss_pred cchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHH
Confidence 44777778888887 678999999999999999988854 4445999999999999998864
No 206
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.55 E-value=0.00019 Score=61.27 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=51.3
Q ss_pred cCHHHHHHHHHHcCC-CCCCeEEEEcCCcchhHHHHHhc-----------------------------------------
Q psy1134 34 KNPLIIQSIVDKGAI-RPTDTVLEIGPGTGNMTVKILEQ----------------------------------------- 71 (149)
Q Consensus 34 ~~~~~~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~----------------------------------------- 71 (149)
..+.++..|+....+ .++..++|.+||+|.+.+..+..
T Consensus 173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 336788888888777 56789999999999999887541
Q ss_pred ---CCeEEEEeCChhHHhhhhhhhcccCe
Q psy1134 72 ---AKKVIACEIDPSCKSYFPSLYYFRNL 97 (149)
Q Consensus 72 ---~~~v~giD~s~~~i~~a~~~~~~~~~ 97 (149)
..+++|+|+++.+++.|++|+...++
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~ 281 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARKNARRAGV 281 (702)
T ss_pred cccCceEEEEECCHHHHHHHHHHHHHcCC
Confidence 12699999999999999999765443
No 207
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.55 E-value=0.00074 Score=51.77 Aligned_cols=60 Identities=17% Similarity=0.223 Sum_probs=41.7
Q ss_pred ccccCHHHHHHHHHHcCCC-CCCeEEEEcCCcch----hHHHHHhc------CCeEEEEeCChhHHhhhhh
Q psy1134 31 HILKNPLIIQSIVDKGAIR-PTDTVLEIGPGTGN----MTVKILEQ------AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~~-~~~~vLDiGcG~G~----~~~~l~~~------~~~v~giD~s~~~i~~a~~ 90 (149)
.|+.++...+.+.+.+... ..-+|+-.||+||- ++..+.+. ..+|+|+|+|+.+++.|++
T Consensus 95 ~FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~ 165 (287)
T PRK10611 95 AFFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARS 165 (287)
T ss_pred CccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHh
Confidence 3666666666666554322 23489999999994 44444443 2479999999999999975
No 208
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.46 E-value=0.00022 Score=50.70 Aligned_cols=34 Identities=26% Similarity=0.528 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC---CeEEEEeCChh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQA---KKVIACEIDPS 83 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~ 83 (149)
++.++||+||++|.++..+.+++ .+|+|+|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45799999999999999999997 79999999986
No 209
>PHA01634 hypothetical protein
Probab=97.46 E-value=0.00028 Score=47.61 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=41.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhhhcccC
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSLYYFRN 96 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~~~~~~ 96 (149)
++++|+|||.+.|..++.++-+ +++|+++|+++.+.+..+++....+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence 6889999999999999999877 5689999999999999988765433
No 210
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.44 E-value=0.00011 Score=53.04 Aligned_cols=80 Identities=19% Similarity=0.289 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcC-CeEEEEeCChhHHhhhhhhhcccCeee-------ccCCCCCc
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA-KKVIACEIDPSCKSYFPSLYYFRNLCL-------QEVPTDFD 107 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~-------~~~~~~~d 107 (149)
....+.+..+.+...+++|||+|.|+|..++..+..| ..|++.|+.|...+..+-|.......+ .-.+..+|
T Consensus 65 ~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~D 144 (218)
T COG3897 65 QVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFD 144 (218)
T ss_pred HHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCccee
Confidence 4456667777777789999999999999999988885 589999999988888776653322221 12556788
Q ss_pred chhhHHHHh
Q psy1134 108 IKTLIDTVL 116 (149)
Q Consensus 108 ~v~~~~~~l 116 (149)
.+... +++
T Consensus 145 l~Lag-Dlf 152 (218)
T COG3897 145 LLLAG-DLF 152 (218)
T ss_pred EEEee-cee
Confidence 87765 444
No 211
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.44 E-value=0.00056 Score=53.19 Aligned_cols=55 Identities=15% Similarity=0.048 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc------CCeEEEEeCChhHHhhhhhhhc
Q psy1134 37 LIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ------AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 37 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~giD~s~~~i~~a~~~~~ 93 (149)
+....++..++ ++..|+|+|||.|.=+..|.+. ...++++|+|.++++.+.+++.
T Consensus 65 ~~~~~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 65 KHSSDIAASIP--SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred HHHHHHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh
Confidence 34555666665 4668999999999988877664 2469999999999999988765
No 212
>PLN02823 spermine synthase
Probab=97.40 E-value=0.0004 Score=54.37 Aligned_cols=44 Identities=25% Similarity=0.501 Sum_probs=39.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~ 93 (149)
++++||.||+|.|..+..+.+. ..+|+.||+++++++.|++.+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~ 148 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLT 148 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcc
Confidence 5679999999999999988876 4689999999999999998764
No 213
>KOG2730|consensus
Probab=97.38 E-value=0.00022 Score=52.34 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=51.0
Q ss_pred ccCHHHHHHHHHHcCCC-CCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcc
Q psy1134 33 LKNPLIIQSIVDKGAIR-PTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYF 94 (149)
Q Consensus 33 ~~~~~~~~~~~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~ 94 (149)
.+.+.....++.+.... ....|+|.-||.|-.++.++.++..|++||++|.-+..|+.|++.
T Consensus 76 vTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaei 138 (263)
T KOG2730|consen 76 VTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEV 138 (263)
T ss_pred eccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhcccee
Confidence 34466666666665433 667899999999999999999999999999999999999998653
No 214
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.37 E-value=0.0007 Score=51.86 Aligned_cols=63 Identities=13% Similarity=0.091 Sum_probs=46.0
Q ss_pred cccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCC-eEEEEeCChhHHhhhhhhhcccCe
Q psy1134 32 ILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK-KVIACEIDPSCKSYFPSLYYFRNL 97 (149)
Q Consensus 32 ~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~i~~a~~~~~~~~~ 97 (149)
|..+...+.++.+. .++++|||+-|=||.++...+..|+ +|++||.|..+++++++|+...++
T Consensus 108 FlDqR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~ 171 (286)
T PF10672_consen 108 FLDQRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGL 171 (286)
T ss_dssp -GGGHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-
T ss_pred cHHHHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 33334455555444 2588999999999999999887764 799999999999999999755443
No 215
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.32 E-value=0.00028 Score=51.16 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCcch----hHHHHHhc----C---CeEEEEeCChhHHhhhhh
Q psy1134 50 PTDTVLEIGPGTGN----MTVKILEQ----A---KKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 50 ~~~~vLDiGcG~G~----~~~~l~~~----~---~~v~giD~s~~~i~~a~~ 90 (149)
+.-+|+-.||+||- ++..+.+. . .+|+|+|+|+.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 34479999999995 44445551 2 489999999999999974
No 216
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.32 E-value=0.00035 Score=51.13 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc----CCeEEEEeCChhHHhhhhhhhc
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ----AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~i~~a~~~~~ 93 (149)
.++.++.+..+.-..+-++.|.+||.|++.--+.=. -..|+|.|+++++++.|++|+.
T Consensus 37 sEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 37 SEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp HHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 344455555555444558999999999987665322 3589999999999999999853
No 217
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.31 E-value=0.0013 Score=49.97 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=31.0
Q ss_pred CCeEEEEcCCcch----hHHHHHhc-------CCeEEEEeCChhHHhhhhh
Q psy1134 51 TDTVLEIGPGTGN----MTVKILEQ-------AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 51 ~~~vLDiGcG~G~----~~~~l~~~-------~~~v~giD~s~~~i~~a~~ 90 (149)
.-+|+-+||+||- ++..+.+. ..+|+|+|+|...++.|++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 4589999999994 44444444 2479999999999999963
No 218
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.21 E-value=0.001 Score=51.16 Aligned_cols=57 Identities=21% Similarity=0.127 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCCC-----CCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc
Q psy1134 37 LIIQSIVDKGAIRP-----TDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 37 ~~~~~~~~~l~~~~-----~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~ 93 (149)
.|+.++...+.... .-++||||||.-.+--.|..+ +.+++|.|+++..++.|+++..
T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~ 147 (299)
T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVE 147 (299)
T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHH
Confidence 46666666665432 347999999998775555444 8999999999999999998754
No 219
>KOG1663|consensus
Probab=97.21 E-value=0.002 Score=47.60 Aligned_cols=62 Identities=23% Similarity=0.134 Sum_probs=51.3
Q ss_pred cccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhc
Q psy1134 32 ILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 32 ~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~ 93 (149)
+...++....+...+...+++++||||.=||+.++..|.. +.+|+++|++++..+.+.+...
T Consensus 55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k 119 (237)
T KOG1663|consen 55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVK 119 (237)
T ss_pred eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHH
Confidence 4455777777777777778999999999999999888776 7899999999999999865543
No 220
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.18 E-value=0.0012 Score=54.14 Aligned_cols=80 Identities=14% Similarity=0.161 Sum_probs=62.3
Q ss_pred HHHhhcccccccccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc----C--CeEEEEeCChhHHhhhhh
Q psy1134 17 VWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ----A--KKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~--~~v~giD~s~~~i~~a~~ 90 (149)
++.+...-.+..|+.| +++.+.+.|...+.+.+..+|.|..||+|.+.....+. . ..++|.|+++.....|+.
T Consensus 154 l~~fa~~~~k~~GEfy-TP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~m 232 (489)
T COG0286 154 LRKFAEAEGKEAGEFY-TPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKM 232 (489)
T ss_pred HHHHHHhcCCCCCccC-ChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHH
Confidence 3344445555567765 88999999999998877789999999999888776554 1 468999999999999998
Q ss_pred hhcccCe
Q psy1134 91 LYYFRNL 97 (149)
Q Consensus 91 ~~~~~~~ 97 (149)
+.-.+++
T Consensus 233 N~~lhgi 239 (489)
T COG0286 233 NLILHGI 239 (489)
T ss_pred HHHHhCC
Confidence 8654444
No 221
>KOG2078|consensus
Probab=97.17 E-value=0.00029 Score=56.18 Aligned_cols=76 Identities=16% Similarity=0.288 Sum_probs=58.1
Q ss_pred HHHhhcccccccccccccCHHH--HHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcc
Q psy1134 17 VWKICIQFNKDFGQHILKNPLI--IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYF 94 (149)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~ 94 (149)
.++++..+...+|..+|..... -+++.. -..+|+.|-|+.||.|-++++++.+++.|++.|++++++++++.+...
T Consensus 216 vre~~~~Fk~DfskVYWnsRL~~Eherlsg--~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~l 293 (495)
T KOG2078|consen 216 VREGGERFKFDFSKVYWNSRLSHEHERLSG--LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKL 293 (495)
T ss_pred EecCCeeEEEecceEEeeccchhHHHHHhh--ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccc
Confidence 4566777777788877543221 122222 334788999999999999999999999999999999999999887543
No 222
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.0011 Score=49.17 Aligned_cols=47 Identities=26% Similarity=0.371 Sum_probs=38.8
Q ss_pred HHHHcCCC-CCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhh
Q psy1134 42 IVDKGAIR-PTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYF 88 (149)
Q Consensus 42 ~~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a 88 (149)
.++...+. +++.+||+|..||-+|..+.++ +.+|+|+|..-+++.+-
T Consensus 70 ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k 118 (245)
T COG1189 70 ALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK 118 (245)
T ss_pred HHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh
Confidence 33444443 6889999999999999999999 56899999999888774
No 223
>PRK10742 putative methyltransferase; Provisional
Probab=97.13 E-value=0.0015 Score=48.93 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=46.6
Q ss_pred HHHHHHcCCCCCC--eEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhc
Q psy1134 40 QSIVDKGAIRPTD--TVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 40 ~~~~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~ 93 (149)
+.+++...+.++. +|||.-+|+|..++.++..|++|+++|-|+.+....+.++.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ 131 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLA 131 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH
Confidence 3456677777777 89999999999999999999899999999999999887653
No 224
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.09 E-value=0.0016 Score=51.80 Aligned_cols=45 Identities=11% Similarity=0.232 Sum_probs=39.8
Q ss_pred CeEEEEcCCcchhHHHHHhc--C-CeEEEEeCChhHHhhhhhhhcccC
Q psy1134 52 DTVLEIGPGTGNMTVKILEQ--A-KKVIACEIDPSCKSYFPSLYYFRN 96 (149)
Q Consensus 52 ~~vLDiGcG~G~~~~~l~~~--~-~~v~giD~s~~~i~~a~~~~~~~~ 96 (149)
-+|||+.||+|..++.++.+ + .+|+++|+|+.+++.+++|++..+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~ 93 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS 93 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 48999999999999999887 3 689999999999999999876543
No 225
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.09 E-value=0.00077 Score=50.42 Aligned_cols=54 Identities=22% Similarity=0.419 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhh
Q psy1134 37 LIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 37 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~ 92 (149)
++.+.++..++ ++.+|+|||||.=-++.+.... +..++|+|++..+++...+-+
T Consensus 94 ~fY~~if~~~~--~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l 149 (251)
T PF07091_consen 94 EFYDEIFGRIP--PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFL 149 (251)
T ss_dssp HHHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHH
Confidence 34444444433 4789999999999999987666 579999999999999987654
No 226
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.07 E-value=0.0025 Score=49.22 Aligned_cols=57 Identities=21% Similarity=0.409 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhh
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~ 92 (149)
+-+.+.+++.+.+.+++.++|-=||.|..+..+++. ..+|+|+|.++.+++.+++++
T Consensus 6 pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L 64 (305)
T TIGR00006 6 SVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERL 64 (305)
T ss_pred chhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH
Confidence 667888899998888899999999999999999887 479999999999999998764
No 227
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.0024 Score=50.18 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=39.7
Q ss_pred HHHHcCCCCCCeEEEEcCCcchhHHHHHhc----------CCeEEEEeCChhHHhhhhhhhcc
Q psy1134 42 IVDKGAIRPTDTVLEIGPGTGNMTVKILEQ----------AKKVIACEIDPSCKSYFPSLYYF 94 (149)
Q Consensus 42 ~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----------~~~v~giD~s~~~i~~a~~~~~~ 94 (149)
+...+....+-.++|+|.|+|.++..+++. ..++.-||+|++..+.=++++.-
T Consensus 69 ~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 69 LWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred HHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 333444334568999999999999887664 45899999999999986666543
No 228
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.00 E-value=0.0019 Score=52.58 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCC--CCCC--eEEEEcCCcchhHHHHHhcCCeEEEE---eCChhHHhhhhhhhcc---cC--eeecc-C
Q psy1134 36 PLIIQSIVDKGAI--RPTD--TVLEIGPGTGNMTVKILEQAKKVIAC---EIDPSCKSYFPSLYYF---RN--LCLQE-V 102 (149)
Q Consensus 36 ~~~~~~~~~~l~~--~~~~--~vLDiGcG~G~~~~~l~~~~~~v~gi---D~s~~~i~~a~~~~~~---~~--~~~~~-~ 102 (149)
.++++.+.+.++. ..+. .+||+|||+|.++..|.+++-.+..+ |..+.+++.|.++-.. .. ..-.. .
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp 178 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFP 178 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCC
Confidence 6788888888876 2232 58999999999999999986654443 5556677777665211 11 12222 3
Q ss_pred CCCCcchhhH
Q psy1134 103 PTDFDIKTLI 112 (149)
Q Consensus 103 ~~~~d~v~~~ 112 (149)
...||.|-|.
T Consensus 179 ~~~fDmvHcs 188 (506)
T PF03141_consen 179 SNAFDMVHCS 188 (506)
T ss_pred ccchhhhhcc
Confidence 4788888775
No 229
>KOG2940|consensus
Probab=96.97 E-value=0.0017 Score=48.30 Aligned_cols=70 Identities=13% Similarity=0.096 Sum_probs=48.9
Q ss_pred CCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhhh--------cccCeeecc-CCCCCcchhhHHHHhcccc
Q psy1134 51 TDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSLY--------YFRNLCLQE-VPTDFDIKTLIDTVLNEIN 120 (149)
Q Consensus 51 ~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~~--------~~~~~~~~~-~~~~~d~v~~~~~~l~~~~ 120 (149)
...++|||||.|.+..++... ..+++-+|.|-.|++.++.-- ...+-+... ...++|+++.. ..++.+.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisS-lslHW~N 151 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISS-LSLHWTN 151 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhh-hhhhhhc
Confidence 347999999999999999887 578999999999999987531 111111222 33688888764 5555443
Q ss_pred c
Q psy1134 121 F 121 (149)
Q Consensus 121 ~ 121 (149)
+
T Consensus 152 d 152 (325)
T KOG2940|consen 152 D 152 (325)
T ss_pred c
Confidence 3
No 230
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.93 E-value=0.0026 Score=51.99 Aligned_cols=60 Identities=15% Similarity=0.063 Sum_probs=47.2
Q ss_pred cCHHHHHHHHHHc--CCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhc
Q psy1134 34 KNPLIIQSIVDKG--AIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 34 ~~~~~~~~~~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~ 93 (149)
.+..-.......+ .+.++.+|||++||.|.=|.++++. ...|+++|+++.-++.++++++
T Consensus 95 vQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~ 159 (470)
T PRK11933 95 IQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANIS 159 (470)
T ss_pred EECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 3333333334445 6678999999999999999999987 3589999999999999988764
No 231
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.89 E-value=0.0042 Score=40.80 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=29.6
Q ss_pred EEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhh
Q psy1134 54 VLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 54 vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~ 91 (149)
++|+|||+|..+ .+.+. +..++|+|+++.+++.++..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 91 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARAR 91 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhh
Confidence 999999999977 44444 24899999999999985544
No 232
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.89 E-value=0.00086 Score=43.81 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCeEEEEeCCh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~ 82 (149)
+....+|||||.|.+...|...|.+=.|+|...
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence 455799999999999999999999999999654
No 233
>KOG4058|consensus
Probab=96.80 E-value=0.0028 Score=43.95 Aligned_cols=56 Identities=13% Similarity=0.298 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcC-CeEEEEeCChhHHhhhhhh
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA-KKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~i~~a~~~ 91 (149)
.+-.+.+++.+.-.+..+++|+|.|.|......+++| .+-+|+|++|-++.+++-+
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~ 114 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLH 114 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHH
Confidence 4455666777776676799999999999999999987 6899999999999988644
No 234
>KOG1975|consensus
Probab=96.80 E-value=0.0016 Score=50.48 Aligned_cols=55 Identities=22% Similarity=0.233 Sum_probs=42.4
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhhh
Q psy1134 38 IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 38 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~~ 92 (149)
|+..++-.....+++.++|+|||-|--.+..-+. -..++|+|+++--|+.|++++
T Consensus 105 wIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RY 160 (389)
T KOG1975|consen 105 WIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRY 160 (389)
T ss_pred HHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHH
Confidence 3333333344457889999999999888776655 568999999999999998875
No 235
>KOG0821|consensus
Probab=96.80 E-value=0.0028 Score=46.82 Aligned_cols=78 Identities=24% Similarity=0.328 Sum_probs=66.9
Q ss_pred HHHHHHHhhcccccccccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhh
Q psy1134 13 VCRTVWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 13 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~ 90 (149)
..+...-|-..+++.+.|+|.-+.++.+.+.+........-|.+||.|.|..+..+.+. ......+|.+...+.-.+.
T Consensus 13 iRe~i~lYRLqA~K~LSQNfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~ 91 (326)
T KOG0821|consen 13 IREIIKLYRLQAAKQLSQNFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQM 91 (326)
T ss_pred HHHHHHHHHHHHHHHHhHhHHhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHH
Confidence 45666777888889999999999999999999988778889999999999999999988 4678889999887766543
No 236
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.70 E-value=0.0032 Score=47.25 Aligned_cols=43 Identities=26% Similarity=0.466 Sum_probs=37.3
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC--CeEEEEeCChhHHhhhhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQA--KKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~i~~a~~~~ 92 (149)
++++||-||-|.|..+..+.+.. .+|+.||+++.+++.|++.+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f 120 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYF 120 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHT
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhc
Confidence 68899999999999999999884 79999999999999998764
No 237
>PRK00536 speE spermidine synthase; Provisional
Probab=96.69 E-value=0.0045 Score=46.87 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=44.6
Q ss_pred HHHHHHHHcCC---CCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhh
Q psy1134 38 IIQSIVDKGAI---RPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 38 ~~~~~~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~ 92 (149)
+-..++..++. .++++||-||.|-|..++.++++..+|+-||+++++++.+++.+
T Consensus 57 iYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~l 114 (262)
T PRK00536 57 IESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFF 114 (262)
T ss_pred hHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHC
Confidence 33444444322 35789999999999999999999679999999999999998853
No 238
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.58 E-value=0.0069 Score=46.04 Aligned_cols=77 Identities=17% Similarity=0.093 Sum_probs=53.6
Q ss_pred hhHHHHHHHhhccccccccccccc--CHHHHHHHHHHcCC----CCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhH
Q psy1134 11 YYVCRTVWKICIQFNKDFGQHILK--NPLIIQSIVDKGAI----RPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSC 84 (149)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~ 84 (149)
.-+.+.+....+.|... |...-. -.-+...+-+..+. ....+||-.|||.|.++..++..|..|.|.|.|--|
T Consensus 12 ~kV~s~L~q~~RDWS~e-g~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~M 90 (270)
T PF07942_consen 12 DKVRSTLKQFVRDWSSE-GEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFM 90 (270)
T ss_pred HHHHHHHHHHHhhCchh-hHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHH
Confidence 44567788888888652 222110 02344444444442 234589999999999999999999999999999999
Q ss_pred Hhhh
Q psy1134 85 KSYF 88 (149)
Q Consensus 85 i~~a 88 (149)
+=..
T Consensus 91 ll~s 94 (270)
T PF07942_consen 91 LLAS 94 (270)
T ss_pred HHHH
Confidence 6553
No 239
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.44 E-value=0.0088 Score=43.61 Aligned_cols=34 Identities=24% Similarity=0.500 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-C--CeEEEEeCCh
Q psy1134 49 RPTDTVLEIGPGTGNMTVKILEQ-A--KKVIACEIDP 82 (149)
Q Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~ 82 (149)
.++..|+|+|+-.|.+++.++++ + ..|+|+|+.|
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 36789999999999999999988 3 3499999988
No 240
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.34 E-value=0.02 Score=41.13 Aligned_cols=59 Identities=22% Similarity=0.281 Sum_probs=42.6
Q ss_pred eEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhh---hcccCeeec-----c--CCCCCcchhh
Q psy1134 53 TVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSL---YYFRNLCLQ-----E--VPTDFDIKTL 111 (149)
Q Consensus 53 ~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~---~~~~~~~~~-----~--~~~~~d~v~~ 111 (149)
+++|||+|.|..+++++=. ..+|+.+|.+..-+...+.- +...+.... . ....||.+++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~a 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTA 121 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEe
Confidence 8999999999999998765 57899999999888876543 333333332 2 4467787765
No 241
>KOG3115|consensus
Probab=96.27 E-value=0.0032 Score=45.85 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=36.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~ 92 (149)
+.-.+.|||||.|-+...|+.. ..-++|.||--...++.+.+.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI 104 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERI 104 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHH
Confidence 3446999999999999999998 457999999999888887764
No 242
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.15 E-value=0.0079 Score=43.96 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=36.1
Q ss_pred EEEEcCCcchhHHHHHhcC--CeEEEEeCChhHHhhhhhhhcc
Q psy1134 54 VLEIGPGTGNMTVKILEQA--KKVIACEIDPSCKSYFPSLYYF 94 (149)
Q Consensus 54 vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~i~~a~~~~~~ 94 (149)
|.||||-=|.+...|.+++ .+++++|+++.-++.|++++..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~ 43 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK 43 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 6899999999999999995 4899999999999999988644
No 243
>KOG1501|consensus
Probab=96.13 E-value=0.007 Score=48.89 Aligned_cols=40 Identities=30% Similarity=0.468 Sum_probs=35.6
Q ss_pred eEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhhh
Q psy1134 53 TVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 53 ~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~~ 92 (149)
.|||||+|||.++...++. +.+|+++|.=..|...|++..
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~ 109 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIM 109 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHH
Confidence 5899999999999998888 558999999999999998653
No 244
>KOG4589|consensus
Probab=96.13 E-value=0.0089 Score=43.10 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=29.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCCh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDP 82 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~ 82 (149)
++.+|||+||-.|.++.-..++ ...|.|||+-.
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence 6789999999999999998887 56899999754
No 245
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.04 E-value=0.014 Score=42.86 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=33.2
Q ss_pred CCCeEEEEcCCcchhHHHH-HhcCCeEEEEeCChhHHhhhhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKI-LEQAKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l-~~~~~~v~giD~s~~~i~~a~~~~ 92 (149)
+..+.||.|+|.|..|..+ .+...+|-.+|+.+..++.|++.+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l 98 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYL 98 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHT
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHh
Confidence 3568999999999999876 555889999999999999998643
No 246
>KOG2920|consensus
Probab=95.95 E-value=0.0062 Score=46.33 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=33.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CeEEEEeCChhHHhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQA-KKVIACEIDPSCKSY 87 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~i~~ 87 (149)
.+++|||+|||+|...+.....+ ..|...|.|.+.++.
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~ 154 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRL 154 (282)
T ss_pred cCceeEecCCcccccchhhhhhccceeeeEecchhheee
Confidence 68899999999999999988886 789999999988843
No 247
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.89 E-value=0.022 Score=41.93 Aligned_cols=90 Identities=19% Similarity=0.293 Sum_probs=55.0
Q ss_pred cccccccccccccC--HHHHHHHHHHcCC----CC-CCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhh-
Q psy1134 22 IQFNKDFGQHILKN--PLIIQSIVDKGAI----RP-TDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSL- 91 (149)
Q Consensus 22 ~~~~~~~g~~~~~~--~~~~~~~~~~l~~----~~-~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~- 91 (149)
..|.+.+.-....+ .-|.+.++..+.. .. +++++|||+|.|..+++++=. ..+|+-+|...+-+...+.-
T Consensus 32 ~~wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~ 111 (215)
T COG0357 32 LKWNKAYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVK 111 (215)
T ss_pred HHhhHhcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHH
Confidence 34444444333333 3355555554422 22 589999999999999998722 56799999998877776543
Q ss_pred --hcccCeeecc-----CC--CC-Ccchhh
Q psy1134 92 --YYFRNLCLQE-----VP--TD-FDIKTL 111 (149)
Q Consensus 92 --~~~~~~~~~~-----~~--~~-~d~v~~ 111 (149)
+...+..... .. .. ||.+++
T Consensus 112 ~eL~L~nv~i~~~RaE~~~~~~~~~D~vts 141 (215)
T COG0357 112 KELGLENVEIVHGRAEEFGQEKKQYDVVTS 141 (215)
T ss_pred HHhCCCCeEEehhhHhhcccccccCcEEEe
Confidence 3334343332 11 13 888876
No 248
>KOG2651|consensus
Probab=95.85 E-value=0.027 Score=44.74 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=35.1
Q ss_pred CCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhh
Q psy1134 51 TDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 51 ~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~ 90 (149)
-+.++|+|.|-|.++.+++=. +-+|++||-|....+.|++
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 357999999999999999776 8899999999888887754
No 249
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.82 E-value=0.023 Score=42.59 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=37.6
Q ss_pred HHHHHHHcC-CCCCCeEEEEcCCcchhHHHHHhc----------CCeEEEEeCChhHHhhhhhhhc
Q psy1134 39 IQSIVDKGA-IRPTDTVLEIGPGTGNMTVKILEQ----------AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 39 ~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~----------~~~v~giD~s~~~i~~a~~~~~ 93 (149)
+..+...+. +..+-+|+|+|+|+|.++..+++. ..+++-||+||.+.+.-++++.
T Consensus 6 ~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 6 IAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp HHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred HHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 334444453 223458999999999999998775 1379999999999888766653
No 250
>KOG2671|consensus
Probab=95.72 E-value=0.013 Score=46.01 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=59.9
Q ss_pred HHHHHhhcccccccccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhh
Q psy1134 15 RTVWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSY 87 (149)
Q Consensus 15 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~ 87 (149)
....+|..+-+...|..- -+.++--.++++....+|+.|.|.-.|||.+....+.-|+.|+|.||+-.++..
T Consensus 174 ~li~~y~LK~R~yiGnTS-mDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vra 245 (421)
T KOG2671|consen 174 ELIEKYDLKKRCYIGNTS-MDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRA 245 (421)
T ss_pred hHhhhcccccccccCCcc-cchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeec
Confidence 555677777777777765 346667777788888899999999999999999988889999999999999884
No 251
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.63 E-value=0.025 Score=43.87 Aligned_cols=58 Identities=17% Similarity=0.320 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~ 93 (149)
|-+...+++.+.+.++..++|-=-|.|-.+..+++. +.+|+|+|.++.+++.+++++.
T Consensus 6 PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~ 65 (310)
T PF01795_consen 6 PVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK 65 (310)
T ss_dssp -TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC
T ss_pred cccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh
Confidence 556778888888888999999999999999999887 6899999999999999987653
No 252
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.62 E-value=0.031 Score=41.18 Aligned_cols=55 Identities=11% Similarity=0.130 Sum_probs=45.1
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhcc
Q psy1134 38 IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYYF 94 (149)
Q Consensus 38 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~~ 94 (149)
....+++.++ .+.++.||||==|++...|.+. ...+++.|+++..++.|.+++..
T Consensus 6 RL~~va~~V~--~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~ 62 (226)
T COG2384 6 RLTTVANLVK--QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKK 62 (226)
T ss_pred HHHHHHHHHH--cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHh
Confidence 3455556655 4556999999999999999988 56899999999999999887643
No 253
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.58 E-value=0.043 Score=42.00 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=45.0
Q ss_pred HHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhh
Q psy1134 40 QSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 40 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~ 92 (149)
......+.+.+++.|||.+++.|.=+.++++. ...|+++|+++.-+...+.+.
T Consensus 75 ~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~ 130 (283)
T PF01189_consen 75 QLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENL 130 (283)
T ss_dssp HHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHH
T ss_pred ccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHH
Confidence 33344567788999999999999999999988 368999999999999998775
No 254
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.56 E-value=0.033 Score=41.18 Aligned_cols=56 Identities=20% Similarity=0.282 Sum_probs=39.2
Q ss_pred HHHHHHHHHH---cCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChh----HHhhhhhh
Q psy1134 36 PLIIQSIVDK---GAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPS----CKSYFPSL 91 (149)
Q Consensus 36 ~~~~~~~~~~---l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~----~i~~a~~~ 91 (149)
+++...+++- +++.+|.+||-+|..+|....++++- ...|+++|.|+. ++..|+++
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R 121 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR 121 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC
Confidence 4445545443 45668899999999999999999998 458999999994 45555544
No 255
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=95.48 E-value=0.018 Score=40.22 Aligned_cols=45 Identities=9% Similarity=0.025 Sum_probs=29.0
Q ss_pred EEEeCChhHHhhhhhhhcc------cCeee-----c--cC-CCCCcchhhHHHHhccccc
Q psy1134 76 IACEIDPSCKSYFPSLYYF------RNLCL-----Q--EV-PTDFDIKTLIDTVLNEINF 121 (149)
Q Consensus 76 ~giD~s~~~i~~a~~~~~~------~~~~~-----~--~~-~~~~d~v~~~~~~l~~~~~ 121 (149)
+|+|+|++|++.|+++... .++.. . .. ...||.|++. .+++++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~-~~l~~~~d 59 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMG-YGLRNVVD 59 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEec-chhhcCCC
Confidence 5899999999999765321 11221 1 12 2479999876 67776653
No 256
>KOG3045|consensus
Probab=95.45 E-value=0.039 Score=41.82 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=36.8
Q ss_pred HHHHHHcCCC-CCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcccCeeecc-CCCCCcchhhH
Q psy1134 40 QSIVDKGAIR-PTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNLCLQE-VPTDFDIKTLI 112 (149)
Q Consensus 40 ~~~~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~-~~~~~d~v~~~ 112 (149)
+.++..+... +...|-|+|||-+.++. ..-.+|+..|+-+ +..+...-++.... ..++.|+++++
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a-----~~~~V~~cDm~~vPl~d~svDvaV~C 235 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS---SERHKVHSFDLVA-----VNERVIACDMRNVPLEDESVDVAVFC 235 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh---ccccceeeeeeec-----CCCceeeccccCCcCccCcccEEEee
Confidence 3344444333 34579999999998875 3346788888654 33333333333333 33566666544
No 257
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=95.44 E-value=0.057 Score=42.71 Aligned_cols=58 Identities=17% Similarity=0.151 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc----CCeEEEEeCChhHHhhhhhhhc
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ----AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~i~~a~~~~~ 93 (149)
..-.......+.+.+|++|||.+++-|.=|.++++. +..|+++|.|+.-++..++++.
T Consensus 142 d~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~ 203 (355)
T COG0144 142 DEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLK 203 (355)
T ss_pred CHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHH
Confidence 333444445678889999999999999999999988 2457999999999999988753
No 258
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=95.44 E-value=0.018 Score=42.90 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhh
Q psy1134 37 LIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 37 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
++..++.+.++..+..+++|+-||+|..+..+.+.+..|+..|+++..+...+.
T Consensus 7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~ 60 (260)
T PF02086_consen 7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKA 60 (260)
T ss_dssp GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHH
Confidence 356778888885467899999999999999987788999999999998888763
No 259
>KOG1227|consensus
Probab=95.31 E-value=0.018 Score=44.40 Aligned_cols=48 Identities=23% Similarity=0.355 Sum_probs=40.5
Q ss_pred CCCeEEEEcCCcchhHH-HHHhc-CCeEEEEeCChhHHhhhhhhhcccCe
Q psy1134 50 PTDTVLEIGPGTGNMTV-KILEQ-AKKVIACEIDPSCKSYFPSLYYFRNL 97 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~-~l~~~-~~~v~giD~s~~~i~~a~~~~~~~~~ 97 (149)
.+..|+|+=+|.|++++ ++... ++.|+++|.+|..++.++++++..+.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V 243 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV 243 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch
Confidence 45789999999999999 56666 56899999999999999988766544
No 260
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.00 E-value=0.12 Score=39.33 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=49.4
Q ss_pred cCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhc
Q psy1134 34 KNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 34 ~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~ 93 (149)
.+.....+.... .-..+..|||.-+|+|..+....+.+..++|+|++++.++.+.+++.
T Consensus 207 ~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~ 265 (302)
T COG0863 207 KPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQ 265 (302)
T ss_pred ChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHH
Confidence 335566666666 44578999999999999998888889999999999999999988764
No 261
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=94.93 E-value=0.089 Score=41.84 Aligned_cols=42 Identities=19% Similarity=0.341 Sum_probs=37.3
Q ss_pred CCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~ 91 (149)
...++|-+|.|.|.-.+.+.+. ..+|+-+|++|+|++.++++
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~ 332 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHA 332 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhh
Confidence 3468999999999999999987 46899999999999999854
No 262
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=94.91 E-value=0.017 Score=42.37 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCCCCC----CeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhcccCeeeccCCCCCcchhh
Q psy1134 36 PLIIQSIVDKGAIRPT----DTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNLCLQEVPTDFDIKTL 111 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~----~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~d~v~~ 111 (149)
+-..+|+.......+. -++|||||=+......-.. -..|+.||+++.--...++-+-...+. ....+.||.|++
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~-~fdvt~IDLns~~~~I~qqDFm~rplp-~~~~e~FdvIs~ 110 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG-WFDVTRIDLNSQHPGILQQDFMERPLP-KNESEKFDVISL 110 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCcccccC-ceeeEEeecCCCCCCceeeccccCCCC-CCcccceeEEEE
Confidence 3344555444432222 4899999875544433221 246999999984433333222111110 013468999987
Q ss_pred HHHHhccccchhHhhcc
Q psy1134 112 IDTVLNEINFADKRART 128 (149)
Q Consensus 112 ~~~~l~~~~~~~~~~~~ 128 (149)
. .||+++|.+..|+.-
T Consensus 111 S-LVLNfVP~p~~RG~M 126 (219)
T PF11968_consen 111 S-LVLNFVPDPKQRGEM 126 (219)
T ss_pred E-EEEeeCCCHHHHHHH
Confidence 7 999999999888643
No 263
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.84 E-value=0.052 Score=41.31 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=36.0
Q ss_pred eEEEEcCCcchhHHHHHhcCC-eEEEEeCChhHHhhhhhhhc
Q psy1134 53 TVLEIGPGTGNMTVKILEQAK-KVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 53 ~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~i~~a~~~~~ 93 (149)
+++|+.||.|.++.-+.+.|. .|.++|+++.+++..+.|+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence 589999999999999988865 46799999999999988863
No 264
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.70 E-value=0.14 Score=39.59 Aligned_cols=57 Identities=21% Similarity=0.364 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhh
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~ 92 (149)
+-+...++..+.+.++...+|.=-|.|-.+..+.++ ..+++|+|.++.+++.|++.+
T Consensus 9 pVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l 68 (314)
T COG0275 9 PVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERL 68 (314)
T ss_pred chHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHh
Confidence 667888899999999999999999999999999888 367999999999999999875
No 265
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=94.61 E-value=0.16 Score=39.18 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=39.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc----CCeEEEEeCChhHHhhhhhhhcccCe
Q psy1134 49 RPTDTVLEIGPGTGNMTVKILEQ----AKKVIACEIDPSCKSYFPSLYYFRNL 97 (149)
Q Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~i~~a~~~~~~~~~ 97 (149)
..+-+||||.||.|...+...+. ..+|...|.|+.-++..++.....++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL 186 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL 186 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC
Confidence 35668999999999998887666 25899999999999998876544333
No 266
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=94.46 E-value=0.11 Score=41.58 Aligned_cols=47 Identities=23% Similarity=0.343 Sum_probs=38.8
Q ss_pred HHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhh
Q psy1134 44 DKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 44 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
+.+.+.++++||-|..|.-+..-.+.+..++|++||+||.+...++=
T Consensus 29 ~aL~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleL 75 (380)
T PF11899_consen 29 EALNIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLEL 75 (380)
T ss_pred HHhCCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHH
Confidence 55677789999999887777776677778999999999999988753
No 267
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=94.23 E-value=0.081 Score=38.82 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=23.3
Q ss_pred HHHHHHcCCCC-CCeEEEEcCCcchhHHHHHhcCCeEEEEeCCh
Q psy1134 40 QSIVDKGAIRP-TDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82 (149)
Q Consensus 40 ~~~~~~l~~~~-~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~ 82 (149)
+.+.+++...+ +..|-|+|||.+.++..+. .+.+|...|+-.
T Consensus 61 d~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva 103 (219)
T PF05148_consen 61 DVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVA 103 (219)
T ss_dssp HHHHHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS-
T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCceEEEeeccC
Confidence 44555554433 4589999999999996643 346788888765
No 268
>KOG1709|consensus
Probab=93.45 E-value=0.32 Score=36.06 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=49.9
Q ss_pred cccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhh
Q psy1134 28 FGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 28 ~g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~ 91 (149)
-|..+.+.+.+.+...+.+. .+|.+||++|=|.|+..-++.+. -.+=+-||..|+..++.+..
T Consensus 80 k~VMm~WEtpiMha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~ 143 (271)
T KOG1709|consen 80 KGVMMRWETPIMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDW 143 (271)
T ss_pred chhhhhhhhHHHHHHHHHHh-hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhc
Confidence 34445566777777777776 68999999999999999998877 34555699999999998765
No 269
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.37 E-value=0.22 Score=39.19 Aligned_cols=47 Identities=26% Similarity=0.350 Sum_probs=38.2
Q ss_pred HcCCCCCCeEEEEcCC-cchhHHHHHhc-CCeEEEEeCChhHHhhhhhh
Q psy1134 45 KGAIRPTDTVLEIGPG-TGNMTVKILEQ-AKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 45 ~l~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~ 91 (149)
.....++++|+=+|+| .|.++..+++. +++|+++|.|++-.+.|++.
T Consensus 161 ~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 161 KANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL 209 (339)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh
Confidence 3455678898888776 56777888885 99999999999999988765
No 270
>KOG1331|consensus
Probab=93.31 E-value=0.13 Score=39.39 Aligned_cols=73 Identities=15% Similarity=0.138 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhc----ccCeeecc-CCCCCcchhhHHHHhccccchhH
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYY----FRNLCLQE-VPTDFDIKTLIDTVLNEINFADK 124 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~----~~~~~~~~-~~~~~d~v~~~~~~l~~~~~~~~ 124 (149)
.+..++|+|||.|-.+..- -...++|+|++...+..+++.-. ..++.... ....||.++.+ .+++|+--...
T Consensus 45 ~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsi-avihhlsT~~R 121 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSI-AVIHHLSTRER 121 (293)
T ss_pred CcceeeecccCCcccCcCC--CcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhh-hhhhhhhhHHH
Confidence 3778999999999876432 13579999999999999876432 12222222 44789999888 88888766554
Q ss_pred h
Q psy1134 125 R 125 (149)
Q Consensus 125 ~ 125 (149)
+
T Consensus 122 R 122 (293)
T KOG1331|consen 122 R 122 (293)
T ss_pred H
Confidence 4
No 271
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.27 E-value=0.19 Score=36.82 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=37.5
Q ss_pred cCCCCCCeEEEEcCCcchhHHHHHhc-C-CeEEEEeCChhHHhhh
Q psy1134 46 GAIRPTDTVLEIGPGTGNMTVKILEQ-A-KKVIACEIDPSCKSYF 88 (149)
Q Consensus 46 l~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~giD~s~~~i~~a 88 (149)
+++.++++||=+|..+|....+.++- + ..|++||.|+.....+
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reL 116 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMREL 116 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHH
Confidence 56778999999999999999999998 3 6799999999876654
No 272
>KOG0024|consensus
Probab=93.22 E-value=0.21 Score=39.05 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=40.3
Q ss_pred HHHHcCCCCCCeEEEEcCCc-chhHHHHHhc--CCeEEEEeCChhHHhhhhh
Q psy1134 42 IVDKGAIRPTDTVLEIGPGT-GNMTVKILEQ--AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 42 ~~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~--~~~v~giD~s~~~i~~a~~ 90 (149)
...+....++.+||-+|+|. |..+...++. ..+|+.+|++++-++.|++
T Consensus 161 Acr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 161 ACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred hhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 34455667899999999995 7777776776 5689999999999999987
No 273
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.21 E-value=0.18 Score=38.52 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=35.7
Q ss_pred eEEEEcCCcchhHHHHHhcCC-eEEEEeCChhHHhhhhhhhc
Q psy1134 53 TVLEIGPGTGNMTVKILEQAK-KVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 53 ~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~i~~a~~~~~ 93 (149)
+++|+-||.|.++.-|.+.|. .|.++|+++.+++.-+.|+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc
Confidence 689999999999999999875 57799999999999888874
No 274
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=93.17 E-value=0.17 Score=38.50 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=39.0
Q ss_pred cCHHHHHHHHHHcCCCCC-CeEEEEcCCcc--hhHHHHHhc---CCeEEEEeCChhHHhhhhhhhc
Q psy1134 34 KNPLIIQSIVDKGAIRPT-DTVLEIGPGTG--NMTVKILEQ---AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 34 ~~~~~~~~~~~~l~~~~~-~~vLDiGcG~G--~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~ 93 (149)
.+..+..+....+-...| ...||||||.= -.+...++. .++|+=+|.+|-.+.+++..+.
T Consensus 51 ~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~ 116 (267)
T PF04672_consen 51 ANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLA 116 (267)
T ss_dssp HHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhc
Confidence 446667777777654423 46999999953 234556655 6899999999999999987653
No 275
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=93.09 E-value=0.19 Score=37.46 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=33.5
Q ss_pred HHHHcCCCCCC--eEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhh
Q psy1134 42 IVDKGAIRPTD--TVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 42 ~~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~ 89 (149)
+++.....++. +|||.=+|.|.-+..++..|++|+++|-||-+....+
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~ 114 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLK 114 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHH
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHH
Confidence 45556555543 8999999999999999988999999999998877765
No 276
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=92.97 E-value=0.16 Score=34.74 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=23.9
Q ss_pred EEcCCcc--hhHHHHH--hc--CCeEEEEeCChhHHhhhhhh
Q psy1134 56 EIGPGTG--NMTVKIL--EQ--AKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 56 DiGcG~G--~~~~~l~--~~--~~~v~giD~s~~~i~~a~~~ 91 (149)
|||++.| ..+..+. .. +.+|+++|++|...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 22 67899999999999888777
No 277
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=92.33 E-value=0.44 Score=37.74 Aligned_cols=47 Identities=26% Similarity=0.294 Sum_probs=38.6
Q ss_pred HcCCCCCCeEEEEcCCc-chhHHHHHhc-CC-eEEEEeCChhHHhhhhhh
Q psy1134 45 KGAIRPTDTVLEIGPGT-GNMTVKILEQ-AK-KVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 45 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~giD~s~~~i~~a~~~ 91 (149)
.....++++||.+|||. |..+..+++. +. +|++++.+++..+.+++.
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 34556788999999988 8888888877 65 599999999999988765
No 278
>KOG1269|consensus
Probab=92.33 E-value=0.082 Score=41.96 Aligned_cols=75 Identities=19% Similarity=0.177 Sum_probs=53.7
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhhhhc------ccCeeecc------CCCCCcchhhHHHHh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSLYY------FRNLCLQE------VPTDFDIKTLIDTVL 116 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~~~------~~~~~~~~------~~~~~d~v~~~~~~l 116 (149)
++..++|+|||.|-....++.. ...++|++.++..+..+..... ..+...-+ ....||.+-++ .+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~l-d~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFL-EVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEE-eec
Confidence 5668999999999999998887 6899999999999998865421 11221111 22578888777 566
Q ss_pred ccccchhHh
Q psy1134 117 NEINFADKR 125 (149)
Q Consensus 117 ~~~~~~~~~ 125 (149)
++.+...++
T Consensus 189 ~~~~~~~~~ 197 (364)
T KOG1269|consen 189 CHAPDLEKV 197 (364)
T ss_pred ccCCcHHHH
Confidence 666665554
No 279
>KOG2798|consensus
Probab=92.15 E-value=0.2 Score=38.98 Aligned_cols=74 Identities=20% Similarity=0.158 Sum_probs=50.5
Q ss_pred HHHHHHHhhcccccccccccc--cCHHHHHHHHHHcCCC----CCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHh
Q psy1134 13 VCRTVWKICIQFNKDFGQHIL--KNPLIIQSIVDKGAIR----PTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKS 86 (149)
Q Consensus 13 ~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~l~~~----~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~ 86 (149)
..+.++...+.|.. .|+..- ....+++.+-...+.. ..-+||-.|||.|.++..|+..|.++-|-|.|--|+=
T Consensus 108 v~s~l~~i~Rdwss-E~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli 186 (369)
T KOG2798|consen 108 VSSTLKQICRDWSS-EGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLI 186 (369)
T ss_pred HHHHHHHHHHHhhh-ccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHH
Confidence 44566777777743 333221 1134555555555442 2347999999999999999999999999999988765
Q ss_pred h
Q psy1134 87 Y 87 (149)
Q Consensus 87 ~ 87 (149)
.
T Consensus 187 ~ 187 (369)
T KOG2798|consen 187 C 187 (369)
T ss_pred H
Confidence 4
No 280
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=92.00 E-value=0.45 Score=36.05 Aligned_cols=45 Identities=16% Similarity=0.443 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcC-------CeEEEEeCCh
Q psy1134 38 IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA-------KKVIACEIDP 82 (149)
Q Consensus 38 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-------~~v~giD~s~ 82 (149)
++..|.+.--+.+...++|+|||.|.++..+++.- ..++.||-..
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 44444444344466689999999999999998862 4788888643
No 281
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.56 E-value=0.32 Score=36.39 Aligned_cols=57 Identities=21% Similarity=0.195 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCC------CCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhh
Q psy1134 36 PLIIQSIVDKGAIR------PTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 36 ~~~~~~~~~~l~~~------~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~ 92 (149)
..+++.+...+... +.-++||||.|.-.+--.+--+ +...+|.|+++..++.|+.+.
T Consensus 58 AdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii 122 (292)
T COG3129 58 ADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAII 122 (292)
T ss_pred hHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHH
Confidence 55677776665332 2336899999877665444434 889999999999999998764
No 282
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=90.80 E-value=0.12 Score=33.11 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=5.9
Q ss_pred EEEcCCcchhHHHHHhc---C--CeEEEEeCChh
Q psy1134 55 LEIGPGTGNMTVKILEQ---A--KKVIACEIDPS 83 (149)
Q Consensus 55 LDiGcG~G~~~~~l~~~---~--~~v~giD~s~~ 83 (149)
||||+..|..+..+++. + .+++++|..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~ 34 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG 34 (106)
T ss_dssp --------------------------EEEESS--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc
Confidence 79999999999998775 2 37999999994
No 283
>KOG3178|consensus
Probab=90.29 E-value=0.63 Score=36.61 Aligned_cols=42 Identities=12% Similarity=0.224 Sum_probs=37.0
Q ss_pred CeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhhc
Q psy1134 52 DTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 52 ~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~ 93 (149)
...+|+|.|.|..+..+...-.+|-+++.+...+-.++..+.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~ 220 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA 220 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc
Confidence 679999999999999998876779999999999988877664
No 284
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.11 E-value=0.51 Score=36.64 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=34.2
Q ss_pred EEEEcCCcchhHHHHHhcCCeE-EEEeCChhHHhhhhhhh
Q psy1134 54 VLEIGPGTGNMTVKILEQAKKV-IACEIDPSCKSYFPSLY 92 (149)
Q Consensus 54 vLDiGcG~G~~~~~l~~~~~~v-~giD~s~~~i~~a~~~~ 92 (149)
|+|+-||.|.++.-|.+.|.++ .++|+++.+++..+.|+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC
Confidence 5899999999999998888765 57999999999988775
No 285
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=90.00 E-value=0.39 Score=34.40 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=20.3
Q ss_pred CcchhHHHH----HhcCCeEEEEeCChhHHhhhhh
Q psy1134 60 GTGNMTVKI----LEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 60 G~G~~~~~l----~~~~~~v~giD~s~~~i~~a~~ 90 (149)
|.|+.++.+ ++.|.+|+|+|++++.++..++
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN 41 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh
Confidence 555555544 4558999999999999988764
No 286
>KOG3924|consensus
Probab=89.74 E-value=0.48 Score=37.95 Aligned_cols=56 Identities=23% Similarity=0.318 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhh
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~ 91 (149)
+.....+...+...+++...|+|.|.|.+..+++.. +.+=+|+|+.....+.+..+
T Consensus 178 ~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~ 235 (419)
T KOG3924|consen 178 LEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELN 235 (419)
T ss_pred HHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHH
Confidence 566777778888889999999999999999998877 45778999988888777544
No 287
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=89.03 E-value=0.6 Score=34.19 Aligned_cols=54 Identities=22% Similarity=0.231 Sum_probs=31.0
Q ss_pred ccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc------CCeEEEEeCCh
Q psy1134 29 GQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ------AKKVIACEIDP 82 (149)
Q Consensus 29 g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~giD~s~ 82 (149)
|....+.+.=.-.+-..+-..+++.|+|+|.=.|-.++.+|.- ..+|+|||++-
T Consensus 11 G~pi~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdi 70 (206)
T PF04989_consen 11 GRPIIQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDI 70 (206)
T ss_dssp TEEESS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-G
T ss_pred CeehhcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCc
Confidence 4444444443333333343346889999999999988887653 47999999953
No 288
>KOG2793|consensus
Probab=88.67 E-value=0.61 Score=35.10 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHH
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCK 85 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i 85 (149)
++..|||+|.|||..++..+.. +..|...|+-.-+.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~ 122 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVE 122 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHH
Confidence 3557999999999888887775 77888888655433
No 289
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.42 E-value=1.1 Score=37.36 Aligned_cols=42 Identities=26% Similarity=0.331 Sum_probs=34.9
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCeEEEEeCChhHHhhhhh
Q psy1134 49 RPTDTVLEIGPGT-GNMTVKILEQ-AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 49 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~v~giD~s~~~i~~a~~ 90 (149)
.++.+|+=+|||. |..+...++. |+.|+++|.+++-++.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4688999999996 6666666666 8899999999999998875
No 290
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=88.25 E-value=1.3 Score=34.52 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=36.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhh
Q psy1134 49 RPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~ 91 (149)
..+.+|+.||.|.-+..-.+++...+|.+||+++..++.-+-+
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lk 104 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLK 104 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHH
Confidence 4577899999998877777888889999999999999876543
No 291
>KOG1098|consensus
Probab=88.10 E-value=0.47 Score=40.17 Aligned_cols=33 Identities=12% Similarity=0.285 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCCh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDP 82 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~ 82 (149)
++..|||+||-.|.+..-.++. +.-|+|||+-|
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 5678999999999999998887 67899999876
No 292
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=88.00 E-value=2.1 Score=33.29 Aligned_cols=46 Identities=26% Similarity=0.464 Sum_probs=34.8
Q ss_pred HcCCCCCCeEEEEcCCc-chhHHHHHhc-CCeEEEEeCChhHHhhhhh
Q psy1134 45 KGAIRPTDTVLEIGPGT-GNMTVKILEQ-AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 45 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~v~giD~s~~~i~~a~~ 90 (149)
.....++++||-.|||. |..+..+++. +.+|++++.+++-.+.+++
T Consensus 161 ~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 161 QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 34556788999999854 5565666665 7789999999988887754
No 293
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=87.93 E-value=0.74 Score=29.74 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=26.7
Q ss_pred CCcchhHHHHHhc----CCeEEEEeCChhHHhhhhhh
Q psy1134 59 PGTGNMTVKILEQ----AKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 59 cG~G~~~~~l~~~----~~~v~giD~s~~~i~~a~~~ 91 (149)
||.|.++..+++. +.+|+.+|.+++.++.++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~ 40 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE 40 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc
Confidence 6778888888776 44899999999999998765
No 294
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=87.69 E-value=1.3 Score=34.78 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=35.2
Q ss_pred CCCeEEEEcCCc-chhHHHHHhc--CCeEEEEeCChhHHhhhhhh
Q psy1134 50 PTDTVLEIGPGT-GNMTVKILEQ--AKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 50 ~~~~vLDiGcG~-G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~ 91 (149)
++.+|+=+|||. |.++..+++. ...|+.+|.+++-++.|++.
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~ 212 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA 212 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh
Confidence 445899999996 8887777777 46899999999999999874
No 295
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=87.64 E-value=1.9 Score=32.84 Aligned_cols=44 Identities=32% Similarity=0.428 Sum_probs=34.6
Q ss_pred CCCCCCeEEEEcCC-cchhHHHHHhc-CCeEEEEeCChhHHhhhhh
Q psy1134 47 AIRPTDTVLEIGPG-TGNMTVKILEQ-AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 47 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~ 90 (149)
...++.+||..||| .|..+..+++. +.+|++++.++...+.+++
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 35567888888876 47777777776 8889999999998888754
No 296
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=87.59 E-value=0.38 Score=36.42 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~ 90 (149)
++.++||||||.-......+.. ...++..|.++.=.+..++
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~k 97 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEK 97 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHH
Confidence 5779999999997665443433 6789999999988886654
No 297
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=87.42 E-value=0.45 Score=38.10 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=16.3
Q ss_pred CCeEEEEcCCcchhHHHHHh
Q psy1134 51 TDTVLEIGPGTGNMTVKILE 70 (149)
Q Consensus 51 ~~~vLDiGcG~G~~~~~l~~ 70 (149)
.-.|+|+|||+|..++.+..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred ceeEEEecCCCCccHHHHHH
Confidence 45799999999988876643
No 298
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=87.24 E-value=1.6 Score=34.70 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=40.2
Q ss_pred CCeEEEEcCCcchhHHHHHhc-CC-eEEEEeCChhHHhhhhhhhccc
Q psy1134 51 TDTVLEIGPGTGNMTVKILEQ-AK-KVIACEIDPSCKSYFPSLYYFR 95 (149)
Q Consensus 51 ~~~vLDiGcG~G~~~~~l~~~-~~-~v~giD~s~~~i~~a~~~~~~~ 95 (149)
+.+|+|.=+|||+=++-++-. +. +|+.-|+||++++..++|+...
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N 99 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN 99 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc
Confidence 778999999999999998877 44 8999999999999999997665
No 299
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=87.13 E-value=2.2 Score=35.31 Aligned_cols=65 Identities=12% Similarity=0.178 Sum_probs=48.9
Q ss_pred ccccccccCHHHHHHHHHHcCCC--CCCeEEEEcCCcchhHHHHHhc------CCeEEEEeCChhHHhhhhhhh
Q psy1134 27 DFGQHILKNPLIIQSIVDKGAIR--PTDTVLEIGPGTGNMTVKILEQ------AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 27 ~~g~~~~~~~~~~~~~~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~------~~~v~giD~s~~~i~~a~~~~ 92 (149)
..|+ +++..++...+...+... ++..+.|..||+|.+.....+. ...++|-|..+++...++.+.
T Consensus 193 ~~g~-~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm 265 (501)
T TIGR00497 193 SGGE-FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNM 265 (501)
T ss_pred cCce-eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHH
Confidence 3344 447788888777766543 4578999999999998764432 246999999999999998874
No 300
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=86.87 E-value=1.4 Score=34.41 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=37.7
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCe-EEEEeCChhHHhhhhhhhcc
Q psy1134 51 TDTVLEIGPGTGNMTVKILEQAKK-VIACEIDPSCKSYFPSLYYF 94 (149)
Q Consensus 51 ~~~vLDiGcG~G~~~~~l~~~~~~-v~giD~s~~~i~~a~~~~~~ 94 (149)
.-+++|+-||.|.+..-+.+.|.+ +.++|+++..++.-+.|+..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~ 47 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH 47 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC
Confidence 347999999999999999888854 66999999999998887653
No 301
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=86.81 E-value=2.7 Score=32.20 Aligned_cols=43 Identities=26% Similarity=0.307 Sum_probs=26.6
Q ss_pred CCeEEEEcCCcchhHHH-HHhc---CCeEEEEeCChhHHhhhhhhhc
Q psy1134 51 TDTVLEIGPGTGNMTVK-ILEQ---AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 51 ~~~vLDiGcG~G~~~~~-l~~~---~~~v~giD~s~~~i~~a~~~~~ 93 (149)
+++|+=||||.=-+|.. +++. +..|+++|+++++++.+++-..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~ 167 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVA 167 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHh
Confidence 45999999996555555 5544 4679999999999999986543
No 302
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=86.23 E-value=1 Score=36.03 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=38.3
Q ss_pred CCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhcccCeee
Q psy1134 51 TDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYYFRNLCL 99 (149)
Q Consensus 51 ~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~~~~~~~ 99 (149)
+-++||.=+|+|.=++-.+.. ..+|+..|+|+++++..++|.+..++..
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~ 101 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED 101 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC
Confidence 448999999999999998777 3689999999999999999976554443
No 303
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=86.06 E-value=3.4 Score=30.08 Aligned_cols=42 Identities=24% Similarity=0.406 Sum_probs=33.3
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCeEEEEeCChhHHhhhhh
Q psy1134 49 RPTDTVLEIGPGT-GNMTVKILEQ-AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 49 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~v~giD~s~~~i~~a~~ 90 (149)
.++++||..|+|+ |..+..+++. +.+|++++.+++..+.++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 5788999999995 6666666665 8899999999887777654
No 304
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=85.08 E-value=2.8 Score=29.23 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEe
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACE 79 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD 79 (149)
.....+...+..-. ...|||+|-|.|..--+|.+. +..|+.+|
T Consensus 15 R~~L~~a~~~v~~~-~G~VlElGLGNGRTydHLRe~~p~R~I~vfD 59 (160)
T PF12692_consen 15 RDCLNWAAAQVAGL-PGPVLELGLGNGRTYDHLREIFPDRRIYVFD 59 (160)
T ss_dssp HHHHHHHHHHTTT---S-EEEE--TTSHHHHHHHHH--SS-EEEEE
T ss_pred HHHHHHHHHHhcCC-CCceEEeccCCCccHHHHHHhCCCCeEEEEe
Confidence 44555666666543 358999999999999999998 78899998
No 305
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=84.87 E-value=3.9 Score=31.62 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=33.7
Q ss_pred HcCCCCCCeEEEEcCC-cchhHHHHHhc-CCeEEEEeCChhHHhhhhhh
Q psy1134 45 KGAIRPTDTVLEIGPG-TGNMTVKILEQ-AKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 45 ~l~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~ 91 (149)
.....++++||=.|+| .|..+..+++. +.+|++++.+++-.+.+++.
T Consensus 160 ~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~ 208 (329)
T TIGR02822 160 RASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL 208 (329)
T ss_pred hcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh
Confidence 3556678899999974 34444445555 77899999999888887653
No 306
>KOG3201|consensus
Probab=84.56 E-value=0.28 Score=34.76 Aligned_cols=53 Identities=11% Similarity=0.112 Sum_probs=36.4
Q ss_pred HHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhh
Q psy1134 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 39 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~ 91 (149)
...+++....-.+.+|||+|.|.-.++-.+... ...|...|-+++.++-.++.
T Consensus 18 a~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki 73 (201)
T KOG3201|consen 18 AWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKI 73 (201)
T ss_pred HHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHH
Confidence 333444444345788999999965555554433 57899999999999887653
No 307
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=83.88 E-value=4.6 Score=31.25 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=32.7
Q ss_pred HHcCCCCCCeEEEEcCC-cchhHHHHHhc-CC-eEEEEeCChhHHhhhhh
Q psy1134 44 DKGAIRPTDTVLEIGPG-TGNMTVKILEQ-AK-KVIACEIDPSCKSYFPS 90 (149)
Q Consensus 44 ~~l~~~~~~~vLDiGcG-~G~~~~~l~~~-~~-~v~giD~s~~~i~~a~~ 90 (149)
......++++||=.||| .|..+..+++. +. +|+++|.+++-.+.+++
T Consensus 163 ~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 163 HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 33444568889888875 24444445555 65 69999999999988875
No 308
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=83.77 E-value=3.4 Score=32.46 Aligned_cols=46 Identities=22% Similarity=0.292 Sum_probs=33.1
Q ss_pred HcCCCCCCeEEEEcCCc-chhHHHHHhc-CC-eEEEEeCChhHHhhhhh
Q psy1134 45 KGAIRPTDTVLEIGPGT-GNMTVKILEQ-AK-KVIACEIDPSCKSYFPS 90 (149)
Q Consensus 45 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~giD~s~~~i~~a~~ 90 (149)
.....++++||=.|||. |..+..+++. +. +|+++|.+++-.+.+++
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 180 TAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 34556788999888752 4455555655 66 79999999988887754
No 309
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=83.66 E-value=3.1 Score=30.42 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=39.0
Q ss_pred ccccccCHHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc----C--CeEEEEeCChhHHhh
Q psy1134 29 GQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ----A--KKVIACEIDPSCKSY 87 (149)
Q Consensus 29 g~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~--~~v~giD~s~~~i~~ 87 (149)
|..-++.+.-.-.+-..+-..++..|+|+|.-.|-.++++|.. | .+|+++|+|-....-
T Consensus 48 G~p~~k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p 112 (237)
T COG3510 48 GIPCIKSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDP 112 (237)
T ss_pred cccccCCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCCh
Confidence 3333444333333333333347889999999999999988775 5 689999988665433
No 310
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=82.90 E-value=4.8 Score=32.65 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=36.8
Q ss_pred HHHHHHHHcCC-CCCCeEEEEcCCc-chhHHHHHhc-CCeEEEEeCChhHHhhhhh
Q psy1134 38 IIQSIVDKGAI-RPTDTVLEIGPGT-GNMTVKILEQ-AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 38 ~~~~~~~~l~~-~~~~~vLDiGcG~-G~~~~~l~~~-~~~v~giD~s~~~i~~a~~ 90 (149)
..+-+.+..+. .++++|+=+|||. |......++. |.+|+.+|.++.-.+.|+.
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 34555555444 4789999999995 4444444444 8899999999987776654
No 311
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=82.67 E-value=2.5 Score=33.75 Aligned_cols=95 Identities=15% Similarity=0.176 Sum_probs=52.9
Q ss_pred CCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhh---hhh-----cccCeeecc------CCCCCcch
Q psy1134 47 AIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFP---SLY-----YFRNLCLQE------VPTDFDIK 109 (149)
Q Consensus 47 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~---~~~-----~~~~~~~~~------~~~~~d~v 109 (149)
+.-.+++|||+|.|.|.-...+... -..++-+|.|+..-+... ++. .++...+.. ....++.+
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~ 189 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLA 189 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehh
Confidence 3346778999999998877666554 356778888886655432 221 112222211 11345555
Q ss_pred hhHHHHhccccchhHhhccCChhhHHHHHHhhhccCccc
Q psy1134 110 TLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHF 148 (149)
Q Consensus 110 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
++.+..++ .. ....+...+.-+|.+.++|.|+
T Consensus 190 i~~~eLl~-d~------~ek~i~~~ie~lw~l~~~gg~l 221 (484)
T COG5459 190 IVLDELLP-DG------NEKPIQVNIERLWNLLAPGGHL 221 (484)
T ss_pred hhhhhhcc-cc------CcchHHHHHHHHHHhccCCCeE
Confidence 55533332 11 1122344777888888877654
No 312
>PRK10458 DNA cytosine methylase; Provisional
Probab=82.60 E-value=5.6 Score=32.83 Aligned_cols=41 Identities=10% Similarity=0.129 Sum_probs=35.3
Q ss_pred CeEEEEcCCcchhHHHHHhcCC-eEEEEeCChhHHhhhhhhh
Q psy1134 52 DTVLEIGPGTGNMTVKILEQAK-KVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 52 ~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~i~~a~~~~ 92 (149)
-+++|+-||.|.+..-+.+.|. .|.++|+++.+.+.-+.|+
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 4899999999999999988765 5679999999988877775
No 313
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=81.52 E-value=4.3 Score=31.70 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=35.7
Q ss_pred HcCCCCCCeEEEEcC--CcchhHHHHHhc-CCeEEEEeCChhHHhhhh
Q psy1134 45 KGAIRPTDTVLEIGP--GTGNMTVKILEQ-AKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 45 ~l~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~v~giD~s~~~i~~a~ 89 (149)
.....++++||=.|+ |.|..+..+++. |.+|++++.+++-.+.++
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLK 200 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 345567889999997 478788888777 889999999988777765
No 314
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=81.41 E-value=1.4 Score=28.85 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=27.9
Q ss_pred CcchhHHHHHhc-CCeEEEEeCChhHHhhhhhh
Q psy1134 60 GTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 60 G~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~~ 91 (149)
|.|..+..+++. |.+|+++|.++.-.+.+++.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~ 33 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL 33 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh
Confidence 568888998887 89999999999999998764
No 315
>KOG2352|consensus
Probab=81.25 E-value=1.2 Score=36.55 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=37.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~ 93 (149)
.+..+|=+|-|.|.+...+... ...++++|++|.|++.+++.+.
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~ 340 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFG 340 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhc
Confidence 3557889999999999998776 4789999999999999988753
No 316
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=81.18 E-value=6.4 Score=26.57 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCcchhH-HHHHhcCCeEEEEeCChh
Q psy1134 50 PTDTVLEIGPGTGNMT-VKILEQAKKVIACEIDPS 83 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~-~~l~~~~~~v~giD~s~~ 83 (149)
...+++|+|-|.=.-. ..|.+.|..|+++|+++.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~ 47 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR 47 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc
Confidence 3459999999976544 445666999999999998
No 317
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=81.01 E-value=3.4 Score=29.59 Aligned_cols=55 Identities=18% Similarity=0.124 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhh
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~ 92 (149)
-.++.|+.+... ...+.+|||...|.+.-..+++ ..+++++|+=.+|-...+.+.
T Consensus 67 lgmrhwivnhck--hdttyidiganvgtfcgiaarhitqgkiiaiepltemensirmnv 123 (286)
T PF05575_consen 67 LGMRHWIVNHCK--HDTTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEMENSIRMNV 123 (286)
T ss_pred cchhHhhhhhcc--CCceEEEeccccccchhhhhhhcccCceEEEechhhhhhheeeee
Confidence 346677777665 3557999999999998887777 679999999888877766654
No 318
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=80.99 E-value=5.6 Score=31.20 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=32.7
Q ss_pred HHcCCCCCCeEEEEcCCc-chhHHHHHhc-CC-eEEEEeCChhHHhhhhh
Q psy1134 44 DKGAIRPTDTVLEIGPGT-GNMTVKILEQ-AK-KVIACEIDPSCKSYFPS 90 (149)
Q Consensus 44 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~giD~s~~~i~~a~~ 90 (149)
......++++||=.|+|. |.++..+++. +. +|+++|.+++-.+.+++
T Consensus 185 ~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 185 NTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 344556788888888752 4444445555 66 69999999998888754
No 319
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=80.92 E-value=6.8 Score=29.01 Aligned_cols=46 Identities=15% Similarity=0.302 Sum_probs=33.2
Q ss_pred HcCCCCCCeEEEEcCCc-chhHHHHHhc-CCe-EEEEeCChhHHhhhhh
Q psy1134 45 KGAIRPTDTVLEIGPGT-GNMTVKILEQ-AKK-VIACEIDPSCKSYFPS 90 (149)
Q Consensus 45 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~-v~giD~s~~~i~~a~~ 90 (149)
.....++++||-.|||. |..+..+++. +.+ |++++.+++..+.+++
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEA 140 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHH
Confidence 34556788888888765 5555556665 667 9999999888776554
No 320
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=80.79 E-value=6.8 Score=29.85 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=34.7
Q ss_pred cCCCCCCeEEEEcCC-cchhHHHHHhc-CCeEEEEeCChhHHhhhhh
Q psy1134 46 GAIRPTDTVLEIGPG-TGNMTVKILEQ-AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 46 l~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~ 90 (149)
....++.+||-.||| .|..+..+++. +.+|++++-+++..+.+++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~ 204 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK 204 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 455677889889987 67666666666 8899999999988877643
No 321
>KOG0022|consensus
Probab=80.68 E-value=4.6 Score=31.80 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=36.6
Q ss_pred HHHHcCCCCCCeEEEEcCCcchhHHHH-Hhc--CCeEEEEeCChhHHhhhhh
Q psy1134 42 IVDKGAIRPTDTVLEIGPGTGNMTVKI-LEQ--AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 42 ~~~~l~~~~~~~vLDiGcG~G~~~~~l-~~~--~~~v~giD~s~~~i~~a~~ 90 (149)
..+-.+..+|+++.-+|+|.=-++... ++. +.+++|||++++-.+.|++
T Consensus 184 a~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 184 AWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred hhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 344556678899999999865555444 333 5689999999999999875
No 322
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=80.41 E-value=4.9 Score=31.35 Aligned_cols=45 Identities=27% Similarity=0.403 Sum_probs=32.0
Q ss_pred cCCCCCCeEEEEcCCc-chhHHHHHhc-CC-eEEEEeCChhHHhhhhh
Q psy1134 46 GAIRPTDTVLEIGPGT-GNMTVKILEQ-AK-KVIACEIDPSCKSYFPS 90 (149)
Q Consensus 46 l~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~giD~s~~~i~~a~~ 90 (149)
....++++||=.|||. |..+..+++. +. +|+++|.+++-.+.+++
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4556788999888743 4445555555 66 59999999988887754
No 323
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=80.28 E-value=4.7 Score=31.28 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEcCCc-chhHHHHHhc---CCeEEEEeCChhHHhhhhh
Q psy1134 47 AIRPTDTVLEIGPGT-GNMTVKILEQ---AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 47 ~~~~~~~vLDiGcG~-G~~~~~l~~~---~~~v~giD~s~~~i~~a~~ 90 (149)
...++++||=+|||. |.++..++++ +.+|+++|.+++-++.++.
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 345788999999753 3344444543 4589999999988887754
No 324
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=80.15 E-value=5.7 Score=29.83 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=31.4
Q ss_pred HHcCCCCCCeEEEEcCC-cchhHHHHHhc-CCe-EEEEeCChhHHhhhhh
Q psy1134 44 DKGAIRPTDTVLEIGPG-TGNMTVKILEQ-AKK-VIACEIDPSCKSYFPS 90 (149)
Q Consensus 44 ~~l~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~-v~giD~s~~~i~~a~~ 90 (149)
......++++||=+|+| .|.++..+++. +.+ |+++|.+++-.+.+++
T Consensus 114 ~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 114 EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred HhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 33444578899988874 23344445554 665 9999999888777654
No 325
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=79.95 E-value=0.66 Score=29.69 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=14.0
Q ss_pred EEEEcCCcchhHHHHHhc
Q psy1134 54 VLEIGPGTGNMTVKILEQ 71 (149)
Q Consensus 54 vLDiGcG~G~~~~~l~~~ 71 (149)
=+|||||.|...-..-+.
T Consensus 6 NIDIGcG~GNTmda~fRs 23 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRS 23 (124)
T ss_pred ccccccCCCcchhhhhhc
Confidence 489999999987665444
No 326
>KOG1122|consensus
Probab=79.77 E-value=2.9 Score=33.94 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=41.9
Q ss_pred HcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhh
Q psy1134 45 KGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 45 ~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~ 92 (149)
.+.++++.+|||.++-.|.=|.++|.. ...|++.|.+.+-+.....++
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~ 286 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANL 286 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHH
Confidence 356778999999999999999888887 568999999999999988875
No 327
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=79.27 E-value=3.9 Score=30.93 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhh
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~ 89 (149)
..+..++...++.. ..+.+|+-||.|.....+.. ..++..|+++.++..-+
T Consensus 12 ~~l~~~i~~~~p~~-~~~yvEPF~Gggsv~l~~~~--~~~~lND~n~~Li~~~~ 62 (266)
T TIGR00571 12 TSLLPEIKKHLPKN-FNCLVEPFVGGGAVFFNLNP--KRYLLNDINEDLINLYK 62 (266)
T ss_pred HHHHHHHHHhcCcc-cCEEEEecCCcchhheeecC--cEEEEecCCHHHHHHHH
Confidence 45677888888742 35899999999999986643 45888999999988743
No 328
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=79.10 E-value=2 Score=34.70 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=24.0
Q ss_pred CcchhHHHHHh----cCCeEEEEeCChhHHhhhhh
Q psy1134 60 GTGNMTVKILE----QAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 60 G~G~~~~~l~~----~~~~v~giD~s~~~i~~a~~ 90 (149)
|-|+.+++++- +|.+|+|+|+++..++..++
T Consensus 16 GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~ 50 (436)
T COG0677 16 GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR 50 (436)
T ss_pred ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC
Confidence 55666666544 48999999999999998754
No 329
>PLN02740 Alcohol dehydrogenase-like
Probab=78.88 E-value=6.8 Score=30.90 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=31.6
Q ss_pred HcCCCCCCeEEEEcCC-cchhHHHHHhc-CC-eEEEEeCChhHHhhhhh
Q psy1134 45 KGAIRPTDTVLEIGPG-TGNMTVKILEQ-AK-KVIACEIDPSCKSYFPS 90 (149)
Q Consensus 45 ~l~~~~~~~vLDiGcG-~G~~~~~l~~~-~~-~v~giD~s~~~i~~a~~ 90 (149)
.....++++||=+||| .|..+..+++. +. +|+++|.+++-.+.+++
T Consensus 193 ~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 193 TANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 3455678899999874 23333334444 66 69999999988888754
No 330
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=78.81 E-value=2.8 Score=32.89 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=16.2
Q ss_pred CCCeEEEEcCCcchhHHHHHhc
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ 71 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~ 71 (149)
+.-+|+|+||.+|..++.+...
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ 37 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSN 37 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHH
T ss_pred CceEEEecCCCCCccHHHHHHH
Confidence 4458999999999999887654
No 331
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=77.90 E-value=9.3 Score=29.24 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=32.7
Q ss_pred cCCCCCCeEEEEcCCc-chhHHHHHhc-CC-eEEEEeCChhHHhhhhh
Q psy1134 46 GAIRPTDTVLEIGPGT-GNMTVKILEQ-AK-KVIACEIDPSCKSYFPS 90 (149)
Q Consensus 46 l~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~giD~s~~~i~~a~~ 90 (149)
+...++++||-.|||. |..+..+++. +. +|++++.++...+.+++
T Consensus 161 ~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 161 AGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA 208 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 3333678888888875 6666666665 76 79999999888776543
No 332
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=77.40 E-value=14 Score=26.61 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhc----CCeEEEEeCChhHHhhhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ----AKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~i~~a~~~ 91 (149)
++++++=+|.| ..+..+++. |.+|+++|.+++.++.+...
T Consensus 27 ~gk~v~I~G~G--~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~ 70 (200)
T cd01075 27 EGKTVAVQGLG--KVGYKLAEHLLEEGAKLIVADINEEAVARAAEL 70 (200)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 67899999997 555555444 88999999999877766544
No 333
>KOG1596|consensus
Probab=77.39 E-value=2.1 Score=32.39 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=38.1
Q ss_pred HcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChh----HHhhhhhh
Q psy1134 45 KGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPS----CKSYFPSL 91 (149)
Q Consensus 45 ~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~----~i~~a~~~ 91 (149)
.+.+.++.+||=+|+++|....+.++- ..-|+++|.|+. ++..|+++
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR 204 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR 204 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc
Confidence 356678999999999999999999988 357999999874 55666554
No 334
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=77.01 E-value=1.9 Score=32.95 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCeEEEEeC
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQAKKVIACEI 80 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~ 80 (149)
.++.+.||-.|||..+..+.+.+..|++-|+
T Consensus 27 s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDl 57 (330)
T COG3392 27 SGKIFCDIFAGTGVVGRFFKKAGNKIIANDL 57 (330)
T ss_pred CCCeeeeeccCccHHHHHHHHhcchhhhchH
Confidence 5678999999999999999999999999885
No 335
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=77.00 E-value=8.4 Score=29.57 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=32.4
Q ss_pred HHHcCCCCCCeEEEEcCC-cchhHHHHHhc-CCe-EEEEeCChhHHhhhhh
Q psy1134 43 VDKGAIRPTDTVLEIGPG-TGNMTVKILEQ-AKK-VIACEIDPSCKSYFPS 90 (149)
Q Consensus 43 ~~~l~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~-v~giD~s~~~i~~a~~ 90 (149)
+..+...++++||=+|+| .|..+..+++. +.+ |++++.+++-.+.+++
T Consensus 156 l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~ 206 (339)
T cd08239 156 LRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA 206 (339)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 344566678898888764 23333444544 767 9999999888877654
No 336
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=76.92 E-value=2.2 Score=32.95 Aligned_cols=36 Identities=44% Similarity=0.837 Sum_probs=30.2
Q ss_pred HHhccccchhHhhccCChhhHHHHHHhhhccCcccC
Q psy1134 114 TVLNEINFADKRARTMDLDDFVLLLATFNKHGIHFA 149 (149)
Q Consensus 114 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (149)
.+++....+..|...++..+|+++...+...|+||+
T Consensus 259 ~~l~~~~~~~~R~e~l~~~~f~~L~~~~~~~~~~~~ 294 (294)
T PTZ00338 259 EILEDSGMFEKRSVKLDIDDFLKLLLAFNKKGIHFV 294 (294)
T ss_pred HHHHHcCCcccChhhCCHHHHHHHHHHHHHcCcccC
Confidence 445544445789999999999999999999999995
No 337
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=76.67 E-value=5.4 Score=30.36 Aligned_cols=39 Identities=8% Similarity=0.090 Sum_probs=29.1
Q ss_pred CeEEEEcCC--cchhHHHHHhcCCeEEEEeCChhHHhhhhh
Q psy1134 52 DTVLEIGPG--TGNMTVKILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 52 ~~vLDiGcG--~G~~~~~l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
++|.=|||| .+.++..++..|..|+.+|.+++.++.+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~ 44 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAME 44 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence 467788888 334555566668899999999999876543
No 338
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=76.34 E-value=1.6 Score=33.42 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhh
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYF 88 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a 88 (149)
....+.+.+.++... +.+|.-||.|+..+.+... .+++.-|++++++..-
T Consensus 13 ~~l~~~i~~~lP~~~--~y~EPF~GggaV~i~~~~~-~~~i~~Din~~Lvn~y 62 (274)
T COG0338 13 SKLLDQIIPHLPEGV--SYIEPFVGGGAVFINLAAK-KKYILNDINPDLVNLY 62 (274)
T ss_pred HHHHHHHHHhCCCCc--eeeCCccCcceeeeehhhh-hhhhHhcCCHHHHHHH
Confidence 446788888888544 9999999999999998876 7889999999998764
No 339
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=76.17 E-value=8.2 Score=29.48 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=36.2
Q ss_pred HHcCCCCCCeEEEEcC--CcchhHHHHHhc-CCeEEEEeCChhHHhhhhh
Q psy1134 44 DKGAIRPTDTVLEIGP--GTGNMTVKILEQ-AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 44 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~ 90 (149)
......++++||=.|. |.|..+..+++. |.+|++++-+++-.+.+++
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~ 181 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK 181 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 3445667889998884 577788778777 8899999988888777753
No 340
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=76.04 E-value=9.9 Score=29.53 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcCCc-chhHHHHHhc-CCeEEEEeC---ChhHHhhhhh
Q psy1134 48 IRPTDTVLEIGPGT-GNMTVKILEQ-AKKVIACEI---DPSCKSYFPS 90 (149)
Q Consensus 48 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~v~giD~---s~~~i~~a~~ 90 (149)
..++++||-+|||. |.++..+++. +.+|++++. ++.-.+.+++
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH
Confidence 34688999998863 5555666665 778999986 5666666543
No 341
>KOG2912|consensus
Probab=75.85 E-value=5.3 Score=31.51 Aligned_cols=56 Identities=23% Similarity=0.204 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCCC-C-CeE---EEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhhhhhc
Q psy1134 38 IIQSIVDKGAIRP-T-DTV---LEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFPSLYY 93 (149)
Q Consensus 38 ~~~~~~~~l~~~~-~-~~v---LDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~~~ 93 (149)
+++++-..+...+ + +++ +|||.|+-.+--.+... +...+++|+++.-...|+.+..
T Consensus 85 YihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~ 147 (419)
T KOG2912|consen 85 YIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVE 147 (419)
T ss_pred hHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhcccc
Confidence 5555555554332 2 223 78888776665444333 7789999999999999988753
No 342
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=75.81 E-value=5.6 Score=30.16 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=28.9
Q ss_pred eEEEEcCCc--chhHHHHHhcCCeEEEEeCChhHHhhhhh
Q psy1134 53 TVLEIGPGT--GNMTVKILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 53 ~vLDiGcG~--G~~~~~l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
+|.=||+|. |.++..|++.+.+|+++|.+++.++.+..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~ 41 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE 41 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 466678775 56666677778899999999988887654
No 343
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=75.15 E-value=3.4 Score=35.03 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=28.0
Q ss_pred CeEEEEcCCcchhHHHHHhc----CCeEEEEeCChhHHhhhhh
Q psy1134 52 DTVLEIGPGTGNMTVKILEQ----AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 52 ~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~i~~a~~ 90 (149)
.+|+= ||.|..+..+++. +.+|+.+|.|++.++.+++
T Consensus 401 ~~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~ 441 (601)
T PRK03659 401 PQVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK 441 (601)
T ss_pred CCEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh
Confidence 35555 5666777766553 7899999999999998865
No 344
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=74.84 E-value=3.5 Score=34.52 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=27.7
Q ss_pred CeEEEEcCCcchhHHHHHhc----CCeEEEEeCChhHHhhhhh
Q psy1134 52 DTVLEIGPGTGNMTVKILEQ----AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 52 ~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~i~~a~~ 90 (149)
.+++= ||.|..+..+++. +.+|+.+|.+++.++.+++
T Consensus 418 ~hiiI--~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~ 458 (558)
T PRK10669 418 NHALL--VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE 458 (558)
T ss_pred CCEEE--ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence 45555 5556666666654 7799999999999998875
No 345
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=74.49 E-value=5.6 Score=26.55 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=25.9
Q ss_pred CCeEEEEcCCcch-hHHHHHhcCCeEEEEeCChh
Q psy1134 51 TDTVLEIGPGTGN-MTVKILEQAKKVIACEIDPS 83 (149)
Q Consensus 51 ~~~vLDiGcG~G~-~~~~l~~~~~~v~giD~s~~ 83 (149)
.++|+|+|-|.=. .+..|+++|..|+++|+++.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~ 47 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK 47 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc
Confidence 4489999988643 34456777999999999998
No 346
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=74.28 E-value=14 Score=28.33 Aligned_cols=46 Identities=24% Similarity=0.450 Sum_probs=34.5
Q ss_pred HcCCCCCCeEEEEcCCc-chhHHHHHhc-CCeEEEEeCChhHHhhhhh
Q psy1134 45 KGAIRPTDTVLEIGPGT-GNMTVKILEQ-AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 45 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~v~giD~s~~~i~~a~~ 90 (149)
.....++++||-.|+|. |..+..+++. +.+|+++.-+++..+.+++
T Consensus 154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~ 201 (337)
T cd08261 154 RAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARE 201 (337)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHH
Confidence 34555788999998763 6677777766 8899999888888877643
No 347
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.78 E-value=7 Score=29.70 Aligned_cols=38 Identities=8% Similarity=0.106 Sum_probs=28.6
Q ss_pred eEEEEcCCc--chhHHHHHhcCCeEEEEeCChhHHhhhhh
Q psy1134 53 TVLEIGPGT--GNMTVKILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 53 ~vLDiGcG~--G~~~~~l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
+|.=||+|. +.++..+++.+.+|+.+|.+++.++.+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~ 42 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQ 42 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence 567778862 34555566668999999999999988764
No 348
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=73.19 E-value=10 Score=30.09 Aligned_cols=51 Identities=25% Similarity=0.435 Sum_probs=39.1
Q ss_pred HHHHHcCCCCCCeEEEEcCCc-chhHHHHHhc--CCeEEEEeCChhHHhhhhhh
Q psy1134 41 SIVDKGAIRPTDTVLEIGPGT-GNMTVKILEQ--AKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 41 ~~~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~--~~~v~giD~s~~~i~~a~~~ 91 (149)
...+..+..++.+|.-+|||. |.-++.=+.. ..+++++|+++.-.++|++-
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 355667778899999999975 5555554444 56899999999999999753
No 349
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.00 E-value=7.9 Score=29.42 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=29.3
Q ss_pred CeEEEEcCCc--chhHHHHHhcCCeEEEEeCChhHHhhhhhh
Q psy1134 52 DTVLEIGPGT--GNMTVKILEQAKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 52 ~~vLDiGcG~--G~~~~~l~~~~~~v~giD~s~~~i~~a~~~ 91 (149)
++|.=||+|+ +.++..+++.+.+|+.+|.+++.++.++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~ 45 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKER 45 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Confidence 3577788873 334445566688999999999988877644
No 350
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.90 E-value=7.6 Score=29.67 Aligned_cols=40 Identities=13% Similarity=0.078 Sum_probs=30.8
Q ss_pred CeEEEEcCC--cchhHHHHHhcCCeEEEEeCChhHHhhhhhh
Q psy1134 52 DTVLEIGPG--TGNMTVKILEQAKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 52 ~~vLDiGcG--~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~ 91 (149)
++|-=||+| -+.++..++..|..|+.+|.+++.++.+.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~ 47 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNR 47 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHH
Confidence 367788888 3455556677799999999999999886544
No 351
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=72.75 E-value=6.1 Score=30.38 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYF 88 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a 88 (149)
++...+|+|.-.|-+|..|.+++-.|++||..+ |.+..
T Consensus 211 ~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~-ma~sL 248 (358)
T COG2933 211 PGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGP-MAQSL 248 (358)
T ss_pred CCceeeecccCCCccchhhhhcceEEEEeccch-hhhhh
Confidence 678899999999999999999999999999555 54444
No 352
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=72.63 E-value=4.8 Score=32.29 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=24.0
Q ss_pred EEEEcCC-cchhHHHHHhcCCeEEEEeCChhHHhhhhh
Q psy1134 54 VLEIGPG-TGNMTVKILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 54 vLDiGcG-~G~~~~~l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
|-=||.| .|..+..+...+..|+++|.+++.++.+++
T Consensus 3 I~VIGlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 3345555 333222222237899999999999998865
No 353
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=72.47 E-value=11 Score=29.05 Aligned_cols=45 Identities=9% Similarity=0.078 Sum_probs=35.0
Q ss_pred cCCCCCCeEEEEcC--CcchhHHHHHhc-CCeEEEEeCChhHHhhhhh
Q psy1134 46 GAIRPTDTVLEIGP--GTGNMTVKILEQ-AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 46 l~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~ 90 (149)
....++++||=.|+ |.|..+..+++. |.+|+++.-+++-.+.+++
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~ 194 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKN 194 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 45667899998886 567777777776 8899999988887777655
No 354
>KOG2352|consensus
Probab=71.38 E-value=7.4 Score=32.16 Aligned_cols=65 Identities=11% Similarity=0.141 Sum_probs=45.7
Q ss_pred eEEEEcCCcchhHHHHHhcCC-eEEEEeCChhHHhhhhhhh---------cccCeeeccC-CCCCcchhhHHHHhcc
Q psy1134 53 TVLEIGPGTGNMTVKILEQAK-KVIACEIDPSCKSYFPSLY---------YFRNLCLQEV-PTDFDIKTLIDTVLNE 118 (149)
Q Consensus 53 ~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~i~~a~~~~---------~~~~~~~~~~-~~~~d~v~~~~~~l~~ 118 (149)
++|.+|||.=-++..+.+.|. .|+.+|+|+-.++...... ...++....+ .++||.++-. +.++.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdk-GtlDa 126 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDK-GTLDA 126 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEec-Ccccc
Confidence 899999999999999888864 7999999999998875543 1222222222 3677777654 44443
No 355
>KOG2360|consensus
Probab=71.01 E-value=6 Score=31.82 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=41.7
Q ss_pred cCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhccc
Q psy1134 46 GAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYYFR 95 (149)
Q Consensus 46 l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~~~ 95 (149)
+.+.+|.+|+|..|-.|.-|.+++.. ..++.|+|.+++..+..+..+...
T Consensus 209 l~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~a 261 (413)
T KOG2360|consen 209 LDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIA 261 (413)
T ss_pred cCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHc
Confidence 45567899999999999999999876 579999999999998877665443
No 356
>KOG1253|consensus
Probab=70.95 E-value=1.1 Score=37.04 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=44.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhhhhhcccCeeeccCC
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFPSLYYFRNLCLQEVP 103 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~ 103 (149)
++-+|||.=|+||.-++..+.. ..+|++.|.+++.++..++|.++...+..+.+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~ 165 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEP 165 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhccc
Confidence 4557999999999999999887 46899999999999999998877655544433
No 357
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.95 E-value=8.5 Score=29.11 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=28.2
Q ss_pred eEEEEcCC--cchhHHHHHhcCCeEEEEeCChhHHhhhh
Q psy1134 53 TVLEIGPG--TGNMTVKILEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 53 ~vLDiGcG--~G~~~~~l~~~~~~v~giD~s~~~i~~a~ 89 (149)
+|-=||+| .+.++..++..+.+|+++|.+++.++.++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~ 43 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGL 43 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHH
Confidence 56677887 35566666777889999999999987543
No 358
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=70.50 E-value=13 Score=28.26 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=34.3
Q ss_pred HcCCCCCCeEEEEcC--CcchhHHHHHhc-CCeEEEEeCChhHHhhhhh
Q psy1134 45 KGAIRPTDTVLEIGP--GTGNMTVKILEQ-AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 45 ~l~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~ 90 (149)
.....++++||=.|. |.|..+..+++. |.+|++++-+++-.+.+++
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE 186 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 345567888888874 667777777776 8899999988877777654
No 359
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=70.06 E-value=13 Score=29.09 Aligned_cols=47 Identities=19% Similarity=0.342 Sum_probs=31.8
Q ss_pred HHcCCCCCCeEEEEcCC-cchhHHHHHhc-CC-eEEEEeCChhHHhhhhh
Q psy1134 44 DKGAIRPTDTVLEIGPG-TGNMTVKILEQ-AK-KVIACEIDPSCKSYFPS 90 (149)
Q Consensus 44 ~~l~~~~~~~vLDiGcG-~G~~~~~l~~~-~~-~v~giD~s~~~i~~a~~ 90 (149)
......++++||=+|+| .|..+..+++. +. +|++++.+++-.+.+++
T Consensus 180 ~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~ 229 (368)
T cd08300 180 NTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK 229 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 33455678899888863 23344444544 66 79999999988887753
No 360
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=69.91 E-value=6.9 Score=24.05 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=19.0
Q ss_pred HHcCCCCCCeEEEEcCCcchhHH--HHHh--cCCeEEEEeCCh
Q psy1134 44 DKGAIRPTDTVLEIGPGTGNMTV--KILE--QAKKVIACEIDP 82 (149)
Q Consensus 44 ~~l~~~~~~~vLDiGcG~G~~~~--~l~~--~~~~v~giD~s~ 82 (149)
+.-+...+++||-|||.+|+-.. ..+. .++..+||-...
T Consensus 32 ~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk 74 (78)
T PF12242_consen 32 SQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK 74 (78)
T ss_dssp HC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred hcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence 33344456899999999997543 2222 266777776543
No 361
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.86 E-value=10 Score=29.62 Aligned_cols=39 Identities=21% Similarity=0.367 Sum_probs=29.9
Q ss_pred CeEEEEcCC--cchhHHHHHhcCCeEEEEeCChhHHhhhhh
Q psy1134 52 DTVLEIGPG--TGNMTVKILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 52 ~~vLDiGcG--~G~~~~~l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
++|-=||+| ...++..++..|..|+..|.+++.++.++.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~ 48 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRA 48 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Confidence 568888988 344555567779999999999998876644
No 362
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=69.42 E-value=6.9 Score=27.74 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=24.9
Q ss_pred EEEEcCCcc--hhHHHHHhcCCeEEEEeCChhHHhhhhhh
Q psy1134 54 VLEIGPGTG--NMTVKILEQAKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 54 vLDiGcG~G--~~~~~l~~~~~~v~giD~s~~~i~~a~~~ 91 (149)
|-=+|+|+= .++..++..|.+|+.+|.+++.++.+++.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~ 41 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKR 41 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhH
Confidence 445677541 23334455599999999999999888654
No 363
>PRK08862 short chain dehydrogenase; Provisional
Probab=69.26 E-value=14 Score=26.98 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCcch---hHHHHHhcCCeEEEEeCChhHHhhhhh
Q psy1134 50 PTDTVLEIGPGTGN---MTVKILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 50 ~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
+++.+|=.|++.|. ++..|+++|.+|+.++-+++.++.+.+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~ 47 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYE 47 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 46789999999987 455566679999999988887765543
No 364
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=68.17 E-value=4.4 Score=29.74 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=32.1
Q ss_pred HHHcCCCCCCeEEEEcCCcchhHHHHHhc---CCeEEEEeCChh
Q psy1134 43 VDKGAIRPTDTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPS 83 (149)
Q Consensus 43 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~ 83 (149)
+......++.+|+|+=.|.|.+|..++.. ...|++.=..+.
T Consensus 41 L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~ 84 (238)
T COG4798 41 LAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL 84 (238)
T ss_pred eEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence 34456678999999999999999999987 247887765554
No 365
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=67.98 E-value=5.5 Score=33.97 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=27.5
Q ss_pred CCeEEEEcCCcchhHHHHHh----cCCeEEEEeCChhHHhhhhh
Q psy1134 51 TDTVLEIGPGTGNMTVKILE----QAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 51 ~~~vLDiGcG~G~~~~~l~~----~~~~v~giD~s~~~i~~a~~ 90 (149)
..+|+=+||| ..+..+++ ++.+++.+|.|++.++.+++
T Consensus 400 ~~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~ 441 (621)
T PRK03562 400 QPRVIIAGFG--RFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK 441 (621)
T ss_pred cCcEEEEecC--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh
Confidence 3567776655 45544443 47899999999999998865
No 366
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=67.90 E-value=22 Score=27.29 Aligned_cols=46 Identities=33% Similarity=0.595 Sum_probs=32.6
Q ss_pred HHcCCCCCCeEEEEcCCc-chhHHHHHhc-CCe-EEEEeCChhHHhhhh
Q psy1134 44 DKGAIRPTDTVLEIGPGT-GNMTVKILEQ-AKK-VIACEIDPSCKSYFP 89 (149)
Q Consensus 44 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~-v~giD~s~~~i~~a~ 89 (149)
......++.+||-.|+|. |..+..+++. |.+ |++++-+++..+.++
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~ 204 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAK 204 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 345556788888878765 6666666666 766 899988887777654
No 367
>KOG0023|consensus
Probab=67.85 E-value=31 Score=27.35 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=34.2
Q ss_pred HHcCCCCCCeEEEEc-CCcchhHHHHHhc-CCeEEEEeCChhHHhhhhh
Q psy1134 44 DKGAIRPTDTVLEIG-PGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 44 ~~l~~~~~~~vLDiG-cG~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~ 90 (149)
.+....+|+++--+| +|-|.++..+++. |.+|+++|-+..--+.+-+
T Consensus 175 k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~ 223 (360)
T KOG0023|consen 175 KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIK 223 (360)
T ss_pred HHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHH
Confidence 334445788766666 3589999999988 9999999999755555433
No 368
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=67.85 E-value=6.8 Score=31.83 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=27.8
Q ss_pred CeEEEEcCCcchhHHHHHhc---CCeEEEEeCChhHHhhhh
Q psy1134 52 DTVLEIGPGTGNMTVKILEQ---AKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 52 ~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~i~~a~ 89 (149)
.+|-=| |.|+.+.+++.. +.+|+|+|++++.++..+
T Consensus 7 mkI~vI--GlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 7 VKIAII--GLGYVGLPLAVEFGKSRQVVGFDVNKKRILELK 45 (425)
T ss_pred CeEEEE--CcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 345445 667787777665 678999999999999886
No 369
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=67.83 E-value=6.4 Score=24.24 Aligned_cols=52 Identities=12% Similarity=-0.009 Sum_probs=39.3
Q ss_pred hhHHHHHHHhhcccccccccccccCHHHHHHHHHHcCCCCCC--eEEEE--cCCcch
Q psy1134 11 YYVCRTVWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTD--TVLEI--GPGTGN 63 (149)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~--~vLDi--GcG~G~ 63 (149)
.-...+++.+++.-...+...|..++...+.|++.+-. +|+ +|.+- ||++|.
T Consensus 5 ~qlRd~l~~~gr~s~~~Ls~~~~~p~~~VeaMLe~l~~-kGkverv~~~~~gC~sGs 60 (78)
T PRK15431 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLES-MGKAVRIQEEPDGCLSGS 60 (78)
T ss_pred HHHHHHHHHcCcccHHHHHHHHCcCHHHHHHHHHHHHH-CCCeEeeccCCCCCCCCC
Confidence 34667888888888888899999999999999998763 333 45423 888884
No 370
>PRK12829 short chain dehydrogenase; Provisional
Probab=67.81 E-value=19 Score=26.31 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=27.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHh----cCCeEEEEeCChhHHhhh
Q psy1134 49 RPTDTVLEIGPGTGNMTVKILE----QAKKVIACEIDPSCKSYF 88 (149)
Q Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~----~~~~v~giD~s~~~i~~a 88 (149)
.+++++|-.|++ |.++..+++ ++.+|++++-+++..+..
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~ 51 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAAT 51 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 467889988886 444555443 488999999887766544
No 371
>PRK10904 DNA adenine methylase; Provisional
Probab=67.76 E-value=8.6 Score=29.19 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhh
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~ 89 (149)
..+..++...++. ..+.+|.-||.|.....+.. .+++..|+++.++..-+
T Consensus 15 ~~l~~~i~~~~P~--~~~yvEPF~GggaV~l~~~~--~~~ilND~n~~Lin~y~ 64 (271)
T PRK10904 15 YPLLDDIKRHLPK--GECLIEPFVGAGSVFLNTDF--SRYILADINSDLISLYN 64 (271)
T ss_pred HHHHHHHHHhCCC--CCcEEeccCCcceeeEecCC--CeEEEEeCCHHHHHHHH
Confidence 4567888888884 26899999999999886532 45778899999988754
No 372
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=67.74 E-value=6.8 Score=31.56 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=29.9
Q ss_pred CCeEEEEcCCcchhHHHHHhc----CCeEEEEeCChhHHhhhhhh
Q psy1134 51 TDTVLEIGPGTGNMTVKILEQ----AKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 51 ~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~i~~a~~~ 91 (149)
.++++=+|+ |.++..+++. +..|+.+|.+++.++.+++.
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~ 273 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE 273 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence 567887776 6676666554 78999999999998877654
No 373
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=67.72 E-value=17 Score=28.45 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=30.7
Q ss_pred HcCCCCCCeEEEEcCC-cchhHHHHHhc-CC-eEEEEeCChhHHhhhhh
Q psy1134 45 KGAIRPTDTVLEIGPG-TGNMTVKILEQ-AK-KVIACEIDPSCKSYFPS 90 (149)
Q Consensus 45 ~l~~~~~~~vLDiGcG-~G~~~~~l~~~-~~-~v~giD~s~~~i~~a~~ 90 (149)
.....++++||=+|+| .|..+..+++. +. +|++++.++.-.+.+++
T Consensus 179 ~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~ 227 (365)
T cd08277 179 TAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE 227 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 3455678899888763 23333444554 66 79999998888777643
No 374
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=67.51 E-value=17 Score=28.34 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=31.1
Q ss_pred cCCCCCCeEEEEcCCc-chhHHHHHhc-CC-eEEEEeCChhHHhhhhh
Q psy1134 46 GAIRPTDTVLEIGPGT-GNMTVKILEQ-AK-KVIACEIDPSCKSYFPS 90 (149)
Q Consensus 46 l~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~giD~s~~~i~~a~~ 90 (149)
....++++||-.|+|. |..+..+++. |. .|++++.++.-.+.+++
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~ 229 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE 229 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 3455678888887643 5555556665 66 69999998887776543
No 375
>KOG2198|consensus
Probab=67.45 E-value=9.9 Score=30.37 Aligned_cols=46 Identities=26% Similarity=0.450 Sum_probs=38.2
Q ss_pred cCCCCCCeEEEEcCCcchhHHHHHhcC--C----eEEEEeCChhHHhhhhhh
Q psy1134 46 GAIRPTDTVLEIGPGTGNMTVKILEQA--K----KVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 46 l~~~~~~~vLDiGcG~G~~~~~l~~~~--~----~v~giD~s~~~i~~a~~~ 91 (149)
+...++.+|||.++-.|.=|..+.+.. . .|++-|.++.-+......
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q 202 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQ 202 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHH
Confidence 355689999999999999999988872 2 899999999888777554
No 376
>KOG1209|consensus
Probab=67.10 E-value=9.5 Score=28.54 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=28.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhc----CCeEEEEeCCh-hHHhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ----AKKVIACEIDP-SCKSYF 88 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~-~~i~~a 88 (149)
..+.||-.||..|-++..|+.. |..|+++-=+- .|.+.+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~ 49 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLA 49 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHH
Confidence 5678999999999988887765 88898875443 344433
No 377
>PRK05867 short chain dehydrogenase; Provisional
Probab=66.60 E-value=24 Score=25.72 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCcchh---HHHHHhcCCeEEEEeCChhHHhhhhh
Q psy1134 50 PTDTVLEIGPGTGNM---TVKILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~---~~~l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
+++.+|-.|++.|.- +..|+++|.+|+.++-+++-++....
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLAD 51 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 578899999877643 33345558999999988876665543
No 378
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=66.38 E-value=8 Score=31.28 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=25.7
Q ss_pred EEEEcCCc-chh-HHHHHhcCCeEEEEeCChhHHhhhhhh
Q psy1134 54 VLEIGPGT-GNM-TVKILEQAKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 54 vLDiGcG~-G~~-~~~l~~~~~~v~giD~s~~~i~~a~~~ 91 (149)
|--+|+|. |.. +..|++.|..|+++|++++-++..++.
T Consensus 3 I~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g 42 (414)
T COG1004 3 ITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKG 42 (414)
T ss_pred eEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCC
Confidence 33455553 222 223566699999999999999998653
No 379
>PLN02780 ketoreductase/ oxidoreductase
Probab=66.37 E-value=16 Score=28.26 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCcch---hHHHHHhcCCeEEEEeCChhHHhhhhhh
Q psy1134 50 PTDTVLEIGPGTGN---MTVKILEQAKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 50 ~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~i~~a~~~ 91 (149)
.++.+|-.|++.|+ ++..|+++|.+|+.++-+++-++...+.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~ 96 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDS 96 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
Confidence 46789999988775 5555666689999999998877765444
No 380
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.36 E-value=13 Score=28.47 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=29.2
Q ss_pred CeEEEEcCCc--chhHHHHHhcCCeEEEEeCChhHHhhhhh
Q psy1134 52 DTVLEIGPGT--GNMTVKILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 52 ~~vLDiGcG~--G~~~~~l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
++|.=||+|. +.++..+++.+.+|+++|.+++.++.+++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~ 45 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARG 45 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence 4677788873 34455566668899999999998887765
No 381
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=66.29 E-value=13 Score=29.62 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=34.4
Q ss_pred cCCCCCCeEEEEcC--CcchhHHHHHhc-CC---eEEEEeCChhHHhhhhhh
Q psy1134 46 GAIRPTDTVLEIGP--GTGNMTVKILEQ-AK---KVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 46 l~~~~~~~vLDiGc--G~G~~~~~l~~~-~~---~v~giD~s~~~i~~a~~~ 91 (149)
....++++||=+|+ |.|..+..+++. +. +|+++|.+++-++.+++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 34456788888873 477777777776 32 799999999988888764
No 382
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=65.87 E-value=20 Score=26.66 Aligned_cols=44 Identities=25% Similarity=0.404 Sum_probs=31.9
Q ss_pred cCCCCCCeEEEEcC--CcchhHHHHHhc-CCeEEEEeCChhHHhhhh
Q psy1134 46 GAIRPTDTVLEIGP--GTGNMTVKILEQ-AKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 46 l~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~v~giD~s~~~i~~a~ 89 (149)
....++..||-.|| +.|..+..+++. +..|++++.+++..+.++
T Consensus 135 ~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 181 (323)
T cd08241 135 ARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALAR 181 (323)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHH
Confidence 34457889999998 355555555555 888999998887776654
No 383
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=65.62 E-value=19 Score=27.39 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=32.3
Q ss_pred HcCCCCCCeEEEEcCC-cchhHHHHHhc-CCe-EEEEeCChhHHhhhhh
Q psy1134 45 KGAIRPTDTVLEIGPG-TGNMTVKILEQ-AKK-VIACEIDPSCKSYFPS 90 (149)
Q Consensus 45 ~l~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~-v~giD~s~~~i~~a~~ 90 (149)
.....++.+||-+|+| .|..+..+++. +.+ |++++-+++..+.+++
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 202 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK 202 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 3455678899999865 35555556655 666 8899999888877643
No 384
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=65.61 E-value=8.5 Score=33.78 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=37.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCeEEEEeCChhHHhhhhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~ 92 (149)
.+..+||.-.|.|++-+..++.|..|+++|++|-+.-..+..+
T Consensus 90 ~~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnPvAylfLKavl 132 (875)
T COG1743 90 EGPKLLDPFAGGGSIPLEALRLGLEVVAVELNPVAYLFLKAVL 132 (875)
T ss_pred cCCcccccccCCCccchHHHhcCceeEEEecccHHHHHHHHHH
Confidence 3557999999999999998888999999999998888777554
No 385
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=64.99 E-value=15 Score=29.32 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=28.4
Q ss_pred CCCeEEEEcCC-cchhHHHHHhc-CCeEEEEeCChhHHhhhhh
Q psy1134 50 PTDTVLEIGPG-TGNMTVKILEQ-AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 50 ~~~~vLDiGcG-~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~ 90 (149)
++.+|+=+|+| .|..+...+.. |.+|+.+|.+++-.+.+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDA 208 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Confidence 45679999887 44444444444 7799999999877665543
No 386
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=64.83 E-value=39 Score=22.60 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=27.5
Q ss_pred CCCCeEEEEcCCc--chhHHHHHhcC-CeEEEEeCChhHHhhhhhh
Q psy1134 49 RPTDTVLEIGPGT--GNMTVKILEQA-KKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 49 ~~~~~vLDiGcG~--G~~~~~l~~~~-~~v~giD~s~~~i~~a~~~ 91 (149)
.++++++-+|||. +..+..+++.+ ..|+.+|.+++-.+.+.+.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~ 62 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAER 62 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 3567899999863 22233334444 6899999998776654433
No 387
>PLN02827 Alcohol dehydrogenase-like
Probab=64.77 E-value=17 Score=28.76 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=30.0
Q ss_pred cCCCCCCeEEEEcCCc-chhHHHHHhc-CC-eEEEEeCChhHHhhhhh
Q psy1134 46 GAIRPTDTVLEIGPGT-GNMTVKILEQ-AK-KVIACEIDPSCKSYFPS 90 (149)
Q Consensus 46 l~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~giD~s~~~i~~a~~ 90 (149)
....++++||-.|+|. |.++..+++. |. .|+++|.+++-.+.+++
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 4456788999888632 3333344444 65 58999988888777653
No 388
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=64.03 E-value=32 Score=27.93 Aligned_cols=51 Identities=24% Similarity=0.232 Sum_probs=32.1
Q ss_pred HHHHHHHHcCC-CCCCeEEEEcCCc-chhHHHHHhc-CCeEEEEeCChhHHhhh
Q psy1134 38 IIQSIVDKGAI-RPTDTVLEIGPGT-GNMTVKILEQ-AKKVIACEIDPSCKSYF 88 (149)
Q Consensus 38 ~~~~~~~~l~~-~~~~~vLDiGcG~-G~~~~~l~~~-~~~v~giD~s~~~i~~a 88 (149)
..+.+.+.... ..+++|+=+|+|. |......++. |.+|+++|.++.....+
T Consensus 181 ~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A 234 (406)
T TIGR00936 181 TIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEA 234 (406)
T ss_pred HHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHH
Confidence 33444444332 4788999999986 3333333333 78999999998654433
No 389
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=64.03 E-value=22 Score=27.48 Aligned_cols=46 Identities=26% Similarity=0.267 Sum_probs=31.4
Q ss_pred HcCCCCCCeEEEEcCC-cchhHHHHHhc-CC-eEEEEeCChhHHhhhhh
Q psy1134 45 KGAIRPTDTVLEIGPG-TGNMTVKILEQ-AK-KVIACEIDPSCKSYFPS 90 (149)
Q Consensus 45 ~l~~~~~~~vLDiGcG-~G~~~~~l~~~-~~-~v~giD~s~~~i~~a~~ 90 (149)
.....++++||-.|+| .|..+..+++. +. .|++++.+++-.+.+++
T Consensus 161 ~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~ 209 (351)
T cd08285 161 LANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE 209 (351)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 3445578888888865 34555555655 66 59999998877776654
No 390
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=62.82 E-value=32 Score=26.27 Aligned_cols=45 Identities=36% Similarity=0.437 Sum_probs=31.8
Q ss_pred HcCCCCCCeEEEEcCCc-chhHHHHHhc-CCe-EEEEeCChhHHhhhh
Q psy1134 45 KGAIRPTDTVLEIGPGT-GNMTVKILEQ-AKK-VIACEIDPSCKSYFP 89 (149)
Q Consensus 45 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~-v~giD~s~~~i~~a~ 89 (149)
.....++.+||-.|+|. |..+..+++. +.+ |++++-++...+.++
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~ 201 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR 201 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 34455778888888755 6666666665 766 999998887777654
No 391
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=62.76 E-value=14 Score=32.07 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=32.1
Q ss_pred CeEEEEcCCc--chhHHHHHhcCCeEEEEeCChhHHhhhhhh
Q psy1134 52 DTVLEIGPGT--GNMTVKILEQAKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 52 ~~vLDiGcG~--G~~~~~l~~~~~~v~giD~s~~~i~~a~~~ 91 (149)
++|-=||+|+ ..++..++..|..|+.+|.+++.++.+..+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~ 355 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTE 355 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Confidence 4688999998 555556677799999999999999876544
No 392
>KOG1201|consensus
Probab=62.61 E-value=18 Score=28.11 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=33.6
Q ss_pred CCCeEEEEcCCcch---hHHHHHhcCCeEEEEeCChhHHhhhhhhh
Q psy1134 50 PTDTVLEIGPGTGN---MTVKILEQAKKVIACEIDPSCKSYFPSLY 92 (149)
Q Consensus 50 ~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~i~~a~~~~ 92 (149)
.++.||--|.|.|. ++..+++++++++..|++++-.....+..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~ 82 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEI 82 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHH
Confidence 57889999999985 55667777899999999987766654443
No 393
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=61.91 E-value=16 Score=28.02 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=27.4
Q ss_pred eEEEEcCCc--chhHHHHHhcCCeEEEEeCChhHHhhhh
Q psy1134 53 TVLEIGPGT--GNMTVKILEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 53 ~vLDiGcG~--G~~~~~l~~~~~~v~giD~s~~~i~~a~ 89 (149)
+|.=||+|. +.++..++++|.+|+++|.+++.++.++
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~ 42 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAP 42 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHH
Confidence 577788773 2445556666889999999998877654
No 394
>PRK07454 short chain dehydrogenase; Provisional
Probab=61.83 E-value=39 Score=24.33 Aligned_cols=38 Identities=5% Similarity=0.016 Sum_probs=25.8
Q ss_pred CCCeEEEEcCCcchhHHHH----HhcCCeEEEEeCChhHHhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKI----LEQAKKVIACEIDPSCKSYF 88 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l----~~~~~~v~giD~s~~~i~~a 88 (149)
+.+++|-.|+ +|.++..+ ++++.+|++++-+++-.+..
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 46 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEAL 46 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 4567888886 44444444 44588999999887655544
No 395
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=61.51 E-value=33 Score=25.07 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=27.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhc----CCeEEEEeCChhHHhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILEQ----AKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~i~~a~ 89 (149)
+++++|=.|+ +|.++..+++. +.+|+.++-++.-++...
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 53 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAA 53 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 5778999895 55556665544 889999998877655544
No 396
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=61.22 E-value=22 Score=27.15 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=30.2
Q ss_pred CCCCCCeEEEEcCC-cchhHHHHHhc-CC-eEEEEeCChhHHhhhhh
Q psy1134 47 AIRPTDTVLEIGPG-TGNMTVKILEQ-AK-KVIACEIDPSCKSYFPS 90 (149)
Q Consensus 47 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~~-~v~giD~s~~~i~~a~~ 90 (149)
...++++||-.|+| .|..+..+++. +. .|++++.++...+.+++
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE 210 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 34467788887765 36666666666 64 78899888777766553
No 397
>PRK09072 short chain dehydrogenase; Provisional
Probab=61.17 E-value=27 Score=25.61 Aligned_cols=40 Identities=10% Similarity=0.146 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCcch---hHHHHHhcCCeEEEEeCChhHHhhhh
Q psy1134 50 PTDTVLEIGPGTGN---MTVKILEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 50 ~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~i~~a~ 89 (149)
+++++|=.|++.|. ++..++++|.+|++++-+++-++...
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 46 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALA 46 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 46678888887654 33345556899999998887665554
No 398
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=61.16 E-value=37 Score=26.48 Aligned_cols=44 Identities=16% Similarity=0.220 Sum_probs=30.7
Q ss_pred HcCCCCCCeEEEEcCCcchhHHH---HHhc-CC-eEEEEeCChhHHhhhhh
Q psy1134 45 KGAIRPTDTVLEIGPGTGNMTVK---ILEQ-AK-KVIACEIDPSCKSYFPS 90 (149)
Q Consensus 45 ~l~~~~~~~vLDiGcG~G~~~~~---l~~~-~~-~v~giD~s~~~i~~a~~ 90 (149)
.....++++||=.|+ |.++.. +++. +. +|++++.+++-.+.+++
T Consensus 182 ~~~~~~g~~VlV~G~--g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 182 VAKVKKGSTVAIFGL--GAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 345567889888876 444444 4444 66 79999999888887754
No 399
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=60.95 E-value=31 Score=24.29 Aligned_cols=43 Identities=14% Similarity=0.312 Sum_probs=30.5
Q ss_pred HHHHHc-CCCCCCeEEEEcCC-c-ch-hHHHHHhcCCeEEEEeCChh
Q psy1134 41 SIVDKG-AIRPTDTVLEIGPG-T-GN-MTVKILEQAKKVIACEIDPS 83 (149)
Q Consensus 41 ~~~~~l-~~~~~~~vLDiGcG-~-G~-~~~~l~~~~~~v~giD~s~~ 83 (149)
++++.. ....+++||=+|.| + |. .+..|.+.+.+|+.++-+.+
T Consensus 33 ~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~ 79 (168)
T cd01080 33 ELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK 79 (168)
T ss_pred HHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch
Confidence 344444 33578999999999 3 88 56666667878988887754
No 400
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=60.86 E-value=38 Score=24.38 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCcchhHHH----HHhcCCeEEEEeCChhHHhh
Q psy1134 50 PTDTVLEIGPGTGNMTVK----ILEQAKKVIACEIDPSCKSY 87 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~----l~~~~~~v~giD~s~~~i~~ 87 (149)
.++++|-.|++ |.++.. |++++.+|++++-++.-+..
T Consensus 5 ~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~ 45 (251)
T PRK12826 5 EGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAA 45 (251)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 46688888865 444444 45558899999988654443
No 401
>PRK05993 short chain dehydrogenase; Provisional
Probab=60.38 E-value=26 Score=26.08 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=26.9
Q ss_pred CCeEEEEcCCcchh---HHHHHhcCCeEEEEeCChhHHhhhh
Q psy1134 51 TDTVLEIGPGTGNM---TVKILEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 51 ~~~vLDiGcG~G~~---~~~l~~~~~~v~giD~s~~~i~~a~ 89 (149)
++++|-.|++.|.- +..|+++|.+|++++-+++.++.+.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~ 45 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE 45 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 56788889865542 3334455889999998887766543
No 402
>PRK07814 short chain dehydrogenase; Provisional
Probab=60.36 E-value=33 Score=25.22 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=26.8
Q ss_pred CCCeEEEEcCCcchhHHHH----HhcCCeEEEEeCChhHHhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKI----LEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l----~~~~~~v~giD~s~~~i~~a~ 89 (149)
+++++|=.|++ |.++..+ +++|.+|++++-+++-++.+.
T Consensus 9 ~~~~vlItGas-ggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 51 (263)
T PRK07814 9 DDQVAVVTGAG-RGLGAAIALAFAEAGADVLIAARTESQLDEVA 51 (263)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 56788888864 4444444 445889999998887655443
No 403
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=60.29 E-value=25 Score=26.92 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=30.6
Q ss_pred CeEEEEcC--CcchhHHHHHhc-CC-eEEEEeCChhHHhhhhh
Q psy1134 52 DTVLEIGP--GTGNMTVKILEQ-AK-KVIACEIDPSCKSYFPS 90 (149)
Q Consensus 52 ~~vLDiGc--G~G~~~~~l~~~-~~-~v~giD~s~~~i~~a~~ 90 (149)
++||=.|+ |.|..+..+++. |. +|++++-+++-.+.+++
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~ 198 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKS 198 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 78888885 677777777776 76 79999999887776654
No 404
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=60.29 E-value=19 Score=27.34 Aligned_cols=38 Identities=18% Similarity=0.137 Sum_probs=27.5
Q ss_pred CeEEEEcCC--cchhHHHHHhcCCeEEEEeCChhHHhhhh
Q psy1134 52 DTVLEIGPG--TGNMTVKILEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 52 ~~vLDiGcG--~G~~~~~l~~~~~~v~giD~s~~~i~~a~ 89 (149)
++|-=||+| ...++..++..+.+|+++|.+++.++.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 44 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGL 44 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence 457777887 23444555666889999999999887654
No 405
>PLN02256 arogenate dehydrogenase
Probab=59.96 E-value=21 Score=27.69 Aligned_cols=46 Identities=11% Similarity=0.066 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCc--chhHHHHHhcCCeEEEEeCChh
Q psy1134 38 IIQSIVDKGAIRPTDTVLEIGPGT--GNMTVKILEQAKKVIACEIDPS 83 (149)
Q Consensus 38 ~~~~~~~~l~~~~~~~vLDiGcG~--G~~~~~l~~~~~~v~giD~s~~ 83 (149)
+-.++-+.+...++.+|.=||+|. |.++..+.+.+.+|+++|.++.
T Consensus 23 ~~~~~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~ 70 (304)
T PLN02256 23 YESRLQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY 70 (304)
T ss_pred hHhHHhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH
Confidence 344555666656677899999873 4455555555778999998874
No 406
>PRK07326 short chain dehydrogenase; Provisional
Probab=59.86 E-value=27 Score=25.01 Aligned_cols=38 Identities=18% Similarity=0.088 Sum_probs=26.2
Q ss_pred CCCeEEEEcCCcchhHHHHHh----cCCeEEEEeCChhHHhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILE----QAKKVIACEIDPSCKSYF 88 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~----~~~~v~giD~s~~~i~~a 88 (149)
+++.+|-+|. +|.++..+++ ++.+|++++-++.-....
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~ 46 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEA 46 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHH
Confidence 4578888885 5555555544 478999999887655544
No 407
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=59.51 E-value=44 Score=24.33 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=27.0
Q ss_pred CCCeEEEEcCCcchhHHHHHh----cCCeEEEEeCChhHHhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILE----QAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~----~~~~v~giD~s~~~i~~a~ 89 (149)
+++++|=.|+ +|.++..+++ +|.+|+.++-++..++...
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAA 51 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 5778998886 4444545444 4889999998877665443
No 408
>PRK08339 short chain dehydrogenase; Provisional
Probab=59.28 E-value=32 Score=25.46 Aligned_cols=41 Identities=7% Similarity=-0.027 Sum_probs=29.3
Q ss_pred CCCeEEEEcCCcchh---HHHHHhcCCeEEEEeCChhHHhhhhh
Q psy1134 50 PTDTVLEIGPGTGNM---TVKILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~---~~~l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
+++.+|-.|++.|+- +..|+++|.+|+.++.+++-++.+.+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 50 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKARE 50 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 577889899877653 33455568999999988776655443
No 409
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=59.19 E-value=13 Score=30.14 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=26.9
Q ss_pred CeEEEEcCCcc--hhHHHHHhcCCeEEEEeCChhHHhhhh
Q psy1134 52 DTVLEIGPGTG--NMTVKILEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 52 ~~vLDiGcG~G--~~~~~l~~~~~~v~giD~s~~~i~~a~ 89 (149)
++|-=||.|.- .++..|++.|.+|+++|.+++.++..+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~ 43 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTIN 43 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence 45667777742 333345666899999999999888743
No 410
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.91 E-value=8.7 Score=28.14 Aligned_cols=47 Identities=34% Similarity=0.524 Sum_probs=36.7
Q ss_pred CCCCeEEEEcCC-cchhHHHHHhcCCeEEEEeCChhHHhhhhhhhccc
Q psy1134 49 RPTDTVLEIGPG-TGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFR 95 (149)
Q Consensus 49 ~~~~~vLDiGcG-~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~~~ 95 (149)
..++.+|-+|.= ||+.+..+..+..+|+.+|+.|.|-...+.+..+.
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~lp~~v~Fr 90 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFLPNNVKFR 90 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcCCCCccHh
Confidence 357789999873 77777777666889999999999988887665443
No 411
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=58.67 E-value=14 Score=26.32 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=53.9
Q ss_pred CCeEEEEcCCcchhHHHHHhc-CCeEEEEeCChhHHhhh-hhhhcc-c--Ceee--ccCCCCCcchhhHHHHhccccchh
Q psy1134 51 TDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYF-PSLYYF-R--NLCL--QEVPTDFDIKTLIDTVLNEINFAD 123 (149)
Q Consensus 51 ~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~i~~a-~~~~~~-~--~~~~--~~~~~~~d~v~~~~~~l~~~~~~~ 123 (149)
+++.+-+|...=..=....++ +++|+.||.++--++.- +.+..- . .... ......||++.+. ++++|.....
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~-~siEh~GLGR 80 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASF-SSIEHFGLGR 80 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccccccHHHHHHHHHHhhccchhhhee-chhccccccc
Confidence 567788887755555555566 45799999886333221 111110 0 0011 1256789999988 7777654211
Q ss_pred --Hhh-ccCChhhHHHHHHhhhccCccc
Q psy1134 124 --KRA-RTMDLDDFVLLLATFNKHGIHF 148 (149)
Q Consensus 124 --~~~-~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
... ..-++....++-+.+++.|..|
T Consensus 81 YGDPidp~Gdl~~m~~i~~vLK~GG~L~ 108 (177)
T PF03269_consen 81 YGDPIDPIGDLRAMAKIKCVLKPGGLLF 108 (177)
T ss_pred cCCCCCccccHHHHHHHHHhhccCCeEE
Confidence 111 1124455666667778777543
No 412
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=58.61 E-value=37 Score=24.68 Aligned_cols=39 Identities=10% Similarity=0.090 Sum_probs=27.0
Q ss_pred CCCeEEEEcCCcchhHHH----HHhcCCeEEEEeCChhHHhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVK----ILEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~----l~~~~~~v~giD~s~~~i~~a~ 89 (149)
+++++|-.|++.|. +.. |+++|.+|+.++-+++.++...
T Consensus 10 ~~k~ilItGas~~I-G~~la~~l~~~G~~v~~~~r~~~~~~~~~ 52 (256)
T PRK06124 10 AGQVALVTGSARGL-GFEIARALAGAGAHVLVNGRNAATLEAAV 52 (256)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 57789988875544 444 3445899999999876655443
No 413
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=58.43 E-value=36 Score=26.10 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=37.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc----C--CeEEEEeCChhHHhhhhhhh--cccCeeec
Q psy1134 49 RPTDTVLEIGPGTGNMTVKILEQ----A--KKVIACEIDPSCKSYFPSLY--YFRNLCLQ 100 (149)
Q Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~----~--~~v~giD~s~~~i~~a~~~~--~~~~~~~~ 100 (149)
..+..++|+|.|+-.=+..|.+. + ..++.+|+|...++...+.+ .+.++.+.
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~ 136 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVN 136 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEe
Confidence 34678999999998877777654 2 47999999999988754432 34454443
No 414
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.40 E-value=43 Score=24.10 Aligned_cols=37 Identities=8% Similarity=-0.063 Sum_probs=25.4
Q ss_pred CCCeEEEEcCCcchhHHHHHh----cCCeEEEEeCChhHHhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILE----QAKKVIACEIDPSCKSY 87 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~----~~~~v~giD~s~~~i~~ 87 (149)
+++++|-.|+ +|.++..+++ ++.+|+.++-++.-.+.
T Consensus 6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~ 46 (239)
T PRK07666 6 QGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKA 46 (239)
T ss_pred CCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 4567888885 5556655544 48899999988765444
No 415
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=58.34 E-value=42 Score=25.31 Aligned_cols=71 Identities=8% Similarity=0.070 Sum_probs=35.5
Q ss_pred cccccccccccCHHHHHHHHHHc--CCCCCCeEEEEcCCcchhHHHHH--hcCCeEEEEeCChhHHhhhhhhhccc
Q psy1134 24 FNKDFGQHILKNPLIIQSIVDKG--AIRPTDTVLEIGPGTGNMTVKIL--EQAKKVIACEIDPSCKSYFPSLYYFR 95 (149)
Q Consensus 24 ~~~~~g~~~~~~~~~~~~~~~~l--~~~~~~~vLDiGcG~G~~~~~l~--~~~~~v~giD~s~~~i~~a~~~~~~~ 95 (149)
+...+.|.+.+......+..-.. ....|++||=+|=.--. ++.++ ...++|+.+|+++.+++..++.....
T Consensus 16 ~~~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~ 90 (243)
T PF01861_consen 16 PDVELDQGYATPETTLRRAALMAERGDLEGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEE 90 (243)
T ss_dssp --GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH
T ss_pred CccccccccccHHHHHHHHHHHHhcCcccCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc
Confidence 34456666655544444433332 22368999998844322 22222 22679999999999999988765443
No 416
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=58.21 E-value=30 Score=27.62 Aligned_cols=48 Identities=6% Similarity=-0.004 Sum_probs=33.6
Q ss_pred HHcCCCCCCeEEEEcCCcchhHHHHHhc-----C----CeEEEEeC----ChhHHhhhhhh
Q psy1134 44 DKGAIRPTDTVLEIGPGTGNMTVKILEQ-----A----KKVIACEI----DPSCKSYFPSL 91 (149)
Q Consensus 44 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-----~----~~v~giD~----s~~~i~~a~~~ 91 (149)
+.+.-.+.-+|+|+|.|.|.-...|.+. + -++|||+. +..-++.+.++
T Consensus 104 eA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~r 164 (374)
T PF03514_consen 104 EAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRR 164 (374)
T ss_pred HHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHH
Confidence 3333334447999999999887776654 2 27999999 67777766655
No 417
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=58.20 E-value=20 Score=31.12 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=31.5
Q ss_pred CeEEEEcCCc--chhHHHHH-hcCCeEEEEeCChhHHhhhhhh
Q psy1134 52 DTVLEIGPGT--GNMTVKIL-EQAKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 52 ~~vLDiGcG~--G~~~~~l~-~~~~~v~giD~s~~~i~~a~~~ 91 (149)
++|.=||+|+ ..++..++ ..|..|+.+|.+++.++.+..+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~ 352 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKY 352 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHH
Confidence 5788999988 44555566 5699999999999998887544
No 418
>PRK08703 short chain dehydrogenase; Provisional
Probab=57.21 E-value=32 Score=24.78 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=26.2
Q ss_pred CCCeEEEEcCCcchhHHHH----HhcCCeEEEEeCChhHHhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKI----LEQAKKVIACEIDPSCKSYF 88 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l----~~~~~~v~giD~s~~~i~~a 88 (149)
+++++|-.||+.| ++..+ ++++.+|++++-++.-.+..
T Consensus 5 ~~k~vlItG~sgg-iG~~la~~l~~~g~~V~~~~r~~~~~~~~ 46 (239)
T PRK08703 5 SDKTILVTGASQG-LGEQVAKAYAAAGATVILVARHQKKLEKV 46 (239)
T ss_pred CCCEEEEECCCCc-HHHHHHHHHHHcCCEEEEEeCChHHHHHH
Confidence 4678999996544 44444 44488999999888655544
No 419
>PRK06720 hypothetical protein; Provisional
Probab=57.14 E-value=41 Score=23.52 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=28.1
Q ss_pred CCCeEEEEcCCcch---hHHHHHhcCCeEEEEeCChhHHhhh
Q psy1134 50 PTDTVLEIGPGTGN---MTVKILEQAKKVIACEIDPSCKSYF 88 (149)
Q Consensus 50 ~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~i~~a 88 (149)
+++.+|-.|.+.|+ ++..|++.+.+|+.+|.+++.++.+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~ 56 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQAT 56 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 56788888887765 3444556689999999887765544
No 420
>PRK07478 short chain dehydrogenase; Provisional
Probab=57.06 E-value=46 Score=24.19 Aligned_cols=41 Identities=10% Similarity=0.059 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCcchh---HHHHHhcCCeEEEEeCChhHHhhhhh
Q psy1134 50 PTDTVLEIGPGTGNM---TVKILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~---~~~l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
+++.+|=.|++.|.- +..|++.|.+|+.++-+++-++.+..
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVA 48 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 467888888876543 33445558899999988776655443
No 421
>PRK05866 short chain dehydrogenase; Provisional
Probab=56.90 E-value=50 Score=25.01 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCcchhHH---HHHhcCCeEEEEeCChhHHhhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTV---KILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~---~l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
.++++|=.|++.|.-.. .|+++|.+|+.++-+++.++...+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVAD 82 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 45789999987665332 244558899999998876665543
No 422
>PRK06949 short chain dehydrogenase; Provisional
Probab=56.83 E-value=34 Score=24.88 Aligned_cols=41 Identities=10% Similarity=0.104 Sum_probs=27.5
Q ss_pred CCCCeEEEEcCCcchhHHHHH----hcCCeEEEEeCChhHHhhhhh
Q psy1134 49 RPTDTVLEIGPGTGNMTVKIL----EQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 49 ~~~~~vLDiGcG~G~~~~~l~----~~~~~v~giD~s~~~i~~a~~ 90 (149)
.+++++|-.|++ |.++..++ +.+.+|++++-+++.++....
T Consensus 7 ~~~k~ilItGas-g~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~ 51 (258)
T PRK06949 7 LEGKVALVTGAS-SGLGARFAQVLAQAGAKVVLASRRVERLKELRA 51 (258)
T ss_pred CCCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 357889988854 44444443 347899999988877655543
No 423
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=56.68 E-value=35 Score=25.08 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=27.7
Q ss_pred CCCeEEEEcCCcch---hHHHHHhcCCeEEEEeCChhHHhhhh
Q psy1134 50 PTDTVLEIGPGTGN---MTVKILEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 50 ~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~i~~a~ 89 (149)
+++.+|=.|++.|+ ++..|+++|.+|+.++-+++.++...
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~ 46 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELE 46 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46788888986654 23344555899999998887665543
No 424
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=56.28 E-value=39 Score=24.09 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=22.7
Q ss_pred EEEEcCCcchhHHHHHhcCCeEEEEeCCh
Q psy1134 54 VLEIGPGTGNMTVKILEQAKKVIACEIDP 82 (149)
Q Consensus 54 vLDiGcG~G~~~~~l~~~~~~v~giD~s~ 82 (149)
|+=+.---|-=+..|.+-|++|++||++|
T Consensus 92 VVLVPLEDGDR~EAL~~mGK~VIaIDLNP 120 (178)
T PF02006_consen 92 VVLVPLEDGDRTEALVKMGKTVIAIDLNP 120 (178)
T ss_pred EEEeccCCCcHHHHHHHcCCeEEEEeCCC
Confidence 33345556777888888899999999999
No 425
>KOG2811|consensus
Probab=55.64 E-value=18 Score=29.10 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=23.6
Q ss_pred CCeEEEEcCCcchhHHHHHhc--CCeEEE---EeCC
Q psy1134 51 TDTVLEIGPGTGNMTVKILEQ--AKKVIA---CEID 81 (149)
Q Consensus 51 ~~~vLDiGcG~G~~~~~l~~~--~~~v~g---iD~s 81 (149)
+..++|+|||-|.++.+++.. ...|+- +|-.
T Consensus 183 ~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~ 218 (420)
T KOG2811|consen 183 SSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRK 218 (420)
T ss_pred cceEEEecCCchHHHHHHHHHhccccEEEEEeeccc
Confidence 357999999999999999876 445554 6643
No 426
>PRK06849 hypothetical protein; Provisional
Probab=55.36 E-value=30 Score=27.42 Aligned_cols=37 Identities=19% Similarity=0.095 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCcch---hHHHHHhcCCeEEEEeCChhHHh
Q psy1134 50 PTDTVLEIGPGTGN---MTVKILEQAKKVIACEIDPSCKS 86 (149)
Q Consensus 50 ~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~i~ 86 (149)
.+++||=+|++.+. +++.|.+.|.+|+++|.++.-..
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~ 42 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLS 42 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHH
Confidence 46789999999873 55566666999999999875543
No 427
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=55.19 E-value=37 Score=24.60 Aligned_cols=39 Identities=13% Similarity=0.085 Sum_probs=26.6
Q ss_pred CCCCeEEEEcCCcchhHHHHH----hcCCeEEEEeCChhHHhhh
Q psy1134 49 RPTDTVLEIGPGTGNMTVKIL----EQAKKVIACEIDPSCKSYF 88 (149)
Q Consensus 49 ~~~~~vLDiGcG~G~~~~~l~----~~~~~v~giD~s~~~i~~a 88 (149)
.+++++|=.|+. |.++..++ +.+.+|++++-++.-++..
T Consensus 10 ~~~k~vlItG~~-g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~ 52 (247)
T PRK08945 10 LKDRIILVTGAG-DGIGREAALTYARHGATVILLGRTEEKLEAV 52 (247)
T ss_pred cCCCEEEEeCCC-chHHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Confidence 367889999964 44554444 3478999999887655443
No 428
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=55.09 E-value=20 Score=29.15 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=25.9
Q ss_pred CCCCeEEEEcCC-cchh--HHHHHhcCCeEEEEeCChh
Q psy1134 49 RPTDTVLEIGPG-TGNM--TVKILEQAKKVIACEIDPS 83 (149)
Q Consensus 49 ~~~~~vLDiGcG-~G~~--~~~l~~~~~~v~giD~s~~ 83 (149)
.++++|+=+|-| +|.. +..|.+.|..|++.|.++.
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 356677777765 6766 4567777999999998754
No 429
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.06 E-value=28 Score=26.40 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=28.2
Q ss_pred CeEEEEcCCc--chhHHHHHhcCCeEEEEeCChhHHhhhh
Q psy1134 52 DTVLEIGPGT--GNMTVKILEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 52 ~~vLDiGcG~--G~~~~~l~~~~~~v~giD~s~~~i~~a~ 89 (149)
++|.=||+|+ +.++..++..+..|+.+|.+++.++.+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 44 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGL 44 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 4677788873 3344556666889999999999888754
No 430
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=54.87 E-value=25 Score=28.05 Aligned_cols=39 Identities=10% Similarity=0.208 Sum_probs=29.9
Q ss_pred eEEEEcCCc---chhHHHHHhcCCeEEEEeCChhHHhhhhhh
Q psy1134 53 TVLEIGPGT---GNMTVKILEQAKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 53 ~vLDiGcG~---G~~~~~l~~~~~~v~giD~s~~~i~~a~~~ 91 (149)
+|+=+|+|. |.+...|.+.+..|+++|..+.+++..++.
T Consensus 2 ki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~q 43 (381)
T PRK02318 2 KAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKR 43 (381)
T ss_pred ceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcC
Confidence 467777763 345666777789999999999999888765
No 431
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=54.07 E-value=28 Score=27.97 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=28.1
Q ss_pred eEEEEcCCcchhHHHHHhc----CCeEEEEeCChhHHhhhhh
Q psy1134 53 TVLEIGPGTGNMTVKILEQ----AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 53 ~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~i~~a~~ 90 (149)
+|+=+|| |.++..+++. +..|+.+|.+++.++.+++
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~ 41 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQD 41 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh
Confidence 4555555 7888887774 7899999999998887764
No 432
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=53.82 E-value=45 Score=25.53 Aligned_cols=45 Identities=27% Similarity=0.354 Sum_probs=29.4
Q ss_pred HcCCCCCCeEEEEcC-CcchhHHHHHhc-CCeEEEEeCChhHHhhhh
Q psy1134 45 KGAIRPTDTVLEIGP-GTGNMTVKILEQ-AKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 45 ~l~~~~~~~vLDiGc-G~G~~~~~l~~~-~~~v~giD~s~~~i~~a~ 89 (149)
.+...++.+||=.|| +.|..+..+++. +.+|++++.+++..+.++
T Consensus 164 ~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~ 210 (337)
T cd05283 164 RNGVGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDAL 210 (337)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 345566777766776 233344444444 779999999888777764
No 433
>PRK07677 short chain dehydrogenase; Provisional
Probab=53.66 E-value=43 Score=24.40 Aligned_cols=40 Identities=13% Similarity=0.068 Sum_probs=26.3
Q ss_pred CCeEEEEcCCcchh---HHHHHhcCCeEEEEeCChhHHhhhhh
Q psy1134 51 TDTVLEIGPGTGNM---TVKILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 51 ~~~vLDiGcG~G~~---~~~l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
++++|-.|++.|.- +..|+++|.+|++++-++...+.+.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~ 43 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKL 43 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 35788888866642 23344558899999988766655443
No 434
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=53.59 E-value=22 Score=24.53 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=24.2
Q ss_pred EEEEcCCcchhHHHHHhc----CCeEEEEeCChhHHhhhhhh
Q psy1134 54 VLEIGPGTGNMTVKILEQ----AKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 54 vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~i~~a~~~ 91 (149)
|-=||+ |..+..++++ +..|++.|.+++..+.+.+.
T Consensus 4 Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~ 43 (163)
T PF03446_consen 4 IGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA 43 (163)
T ss_dssp EEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT
T ss_pred EEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh
Confidence 334555 5666666554 88999999999888776543
No 435
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=52.71 E-value=13 Score=25.47 Aligned_cols=22 Identities=18% Similarity=-0.002 Sum_probs=18.0
Q ss_pred eEEEEeCChhHHhhhhhhhccc
Q psy1134 74 KVIACEIDPSCKSYFPSLYYFR 95 (149)
Q Consensus 74 ~v~giD~s~~~i~~a~~~~~~~ 95 (149)
+|+|+|+.+++++.+++++...
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~ 22 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEA 22 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT
T ss_pred CEEEEECHHHHHHHHHHHHHhc
Confidence 6999999999999999886543
No 436
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=52.41 E-value=25 Score=30.75 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=31.2
Q ss_pred CeEEEEcCCc--chhHHHHHhcCCeEEEEeCChhHHhhhhhh
Q psy1134 52 DTVLEIGPGT--GNMTVKILEQAKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 52 ~~vLDiGcG~--G~~~~~l~~~~~~v~giD~s~~~i~~a~~~ 91 (149)
++|-=||+|+ +.++..++..|..|+.+|.+++.++.+.++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~ 377 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQ 377 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHH
Confidence 4688899985 344455666799999999999999987654
No 437
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=52.40 E-value=19 Score=26.54 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=25.0
Q ss_pred eEEEEcCCc--chhHHHHHhcCCeEEEEeCChhHHhhh
Q psy1134 53 TVLEIGPGT--GNMTVKILEQAKKVIACEIDPSCKSYF 88 (149)
Q Consensus 53 ~vLDiGcG~--G~~~~~l~~~~~~v~giD~s~~~i~~a 88 (149)
+++=+|||. +.++..|.+.+..|+.+|.+++.++..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~ 39 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEF 39 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHH
Confidence 456667763 233333444588999999999998884
No 438
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=52.31 E-value=13 Score=27.96 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=12.9
Q ss_pred HHHhcCCeEEEEeCChh
Q psy1134 67 KILEQAKKVIACEIDPS 83 (149)
Q Consensus 67 ~l~~~~~~v~giD~s~~ 83 (149)
.|++.|.+|++||.+|.
T Consensus 25 aL~~~G~~VlaID~dpq 41 (243)
T PF06564_consen 25 ALARLGESVLAIDLDPQ 41 (243)
T ss_pred HHHHCCCcEEEEeCCcH
Confidence 34445999999999953
No 439
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=52.26 E-value=18 Score=29.00 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=24.1
Q ss_pred EEEEcCCc-c-hhHHHHHhcCCeEEEEeCChhHHhhhh
Q psy1134 54 VLEIGPGT-G-NMTVKILEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 54 vLDiGcG~-G-~~~~~l~~~~~~v~giD~s~~~i~~a~ 89 (149)
|-=||+|. | .++..|++.|.+|+++|.+++.++..+
T Consensus 3 I~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~ 40 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLN 40 (411)
T ss_pred EEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhh
Confidence 44566663 2 233334555889999999999887654
No 440
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=51.59 E-value=23 Score=29.68 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=24.8
Q ss_pred CCCCCeEEEEcCCcchhHHH-H-HhcCCeEEEEeCCh
Q psy1134 48 IRPTDTVLEIGPGTGNMTVK-I-LEQAKKVIACEIDP 82 (149)
Q Consensus 48 ~~~~~~vLDiGcG~G~~~~~-l-~~~~~~v~giD~s~ 82 (149)
...+++|+=||+|..-++.. . ++.|.+|+.+|..+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~ 170 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP 170 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 34688999999996544433 3 34488999999543
No 441
>KOG2539|consensus
Probab=51.48 E-value=5.5 Score=32.81 Aligned_cols=74 Identities=15% Similarity=0.072 Sum_probs=48.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc----CCeEEEEeCChhHHhhhhhhhcc---------cCee--ecc---CC-CCCcch
Q psy1134 49 RPTDTVLEIGPGTGNMTVKILEQ----AKKVIACEIDPSCKSYFPSLYYF---------RNLC--LQE---VP-TDFDIK 109 (149)
Q Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~i~~a~~~~~~---------~~~~--~~~---~~-~~~d~v 109 (149)
..++.+.|+|.|.|.-.-.+... ...++.||.|..|......+.+- .+.. .+- .. ..+|++
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 35667889988877766554433 45789999999999988665432 1100 000 22 348998
Q ss_pred hhHHHHhccccchh
Q psy1134 110 TLIDTVLNEINFAD 123 (149)
Q Consensus 110 ~~~~~~l~~~~~~~ 123 (149)
++. .+++++....
T Consensus 279 i~a-h~l~~~~s~~ 291 (491)
T KOG2539|consen 279 ICA-HKLHELGSKF 291 (491)
T ss_pred Eee-eeeeccCCch
Confidence 887 7777766554
No 442
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=51.39 E-value=53 Score=24.46 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=32.2
Q ss_pred CCCCCCeEEEEcC--CcchhHHHHHhc-CCeEEEEeCChhHHhhhh
Q psy1134 47 AIRPTDTVLEIGP--GTGNMTVKILEQ-AKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 47 ~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~v~giD~s~~~i~~a~ 89 (149)
...++++||=.|+ +.|..+..+++. +.+|+++..+++-.+.++
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 184 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLK 184 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 3456788888886 567777777776 889999988887766653
No 443
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=51.20 E-value=62 Score=25.32 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=29.6
Q ss_pred HcCCCCCCeEEEEcCC-cchhHHHHHhc-CC-eEEEEeCChhHHhhhh
Q psy1134 45 KGAIRPTDTVLEIGPG-TGNMTVKILEQ-AK-KVIACEIDPSCKSYFP 89 (149)
Q Consensus 45 ~l~~~~~~~vLDiGcG-~G~~~~~l~~~-~~-~v~giD~s~~~i~~a~ 89 (149)
.....++++||-.||| .|..+..+++. +. +|+++|.++.-.+.++
T Consensus 171 ~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~ 218 (375)
T cd08282 171 LAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAE 218 (375)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 3445577887777775 35555555554 65 7989998877766654
No 444
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=50.89 E-value=73 Score=24.14 Aligned_cols=45 Identities=24% Similarity=0.387 Sum_probs=32.6
Q ss_pred HcCCCCCCeEEEEcC--CcchhHHHHHhc-CCeEEEEeCChhHHhhhh
Q psy1134 45 KGAIRPTDTVLEIGP--GTGNMTVKILEQ-AKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 45 ~l~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~v~giD~s~~~i~~a~ 89 (149)
.+...++.+||=.|+ +.|..+..+++. +.+|+.++.+++..+.++
T Consensus 157 ~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~ 204 (334)
T PRK13771 157 RAGVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVS 204 (334)
T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 345567788888888 466666666666 889999988887766653
No 445
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=50.74 E-value=36 Score=26.78 Aligned_cols=44 Identities=23% Similarity=0.435 Sum_probs=32.8
Q ss_pred CCCCCCeEEEEcC--CcchhHHHHHhc-CCeEEEEeCChhHHhhhhh
Q psy1134 47 AIRPTDTVLEIGP--GTGNMTVKILEQ-AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 47 ~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~ 90 (149)
...++.+||=.|+ +.|..+..+++. +.++++++.+++-.+.+++
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRA 236 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 3456789998886 556666666666 8888889988888877754
No 446
>PRK07062 short chain dehydrogenase; Provisional
Probab=50.70 E-value=51 Score=24.16 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCcchhH---HHHHhcCCeEEEEeCChhHHhhhh
Q psy1134 50 PTDTVLEIGPGTGNMT---VKILEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~---~~l~~~~~~v~giD~s~~~i~~a~ 89 (149)
+++.+|-.|++.|.-. ..|+++|.+|+.++-+++-++.+.
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 49 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAE 49 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 5778999998776433 334445889999998876655443
No 447
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=50.57 E-value=60 Score=24.80 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=30.1
Q ss_pred HcCCCCCCeEEEEcCCcchhHHH---HHhc-CCeEEEEeCChhHHhhhh
Q psy1134 45 KGAIRPTDTVLEIGPGTGNMTVK---ILEQ-AKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 45 ~l~~~~~~~vLDiGcG~G~~~~~---l~~~-~~~v~giD~s~~~i~~a~ 89 (149)
.+...++++||=.|| |.++.. +++. +.+|+.++.+++-.+.++
T Consensus 158 ~~~~~~~~~vlV~g~--g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~ 204 (333)
T cd08296 158 NSGAKPGDLVAVQGI--GGLGHLAVQYAAKMGFRTVAISRGSDKADLAR 204 (333)
T ss_pred hcCCCCCCEEEEECC--cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence 346667888888885 444444 4444 778999999887777764
No 448
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=50.29 E-value=39 Score=26.04 Aligned_cols=45 Identities=24% Similarity=0.269 Sum_probs=29.8
Q ss_pred cCCCCCCeEEEEcCCc-chhHHHHHhc-CCe-EEEEeCChhHHhhhhh
Q psy1134 46 GAIRPTDTVLEIGPGT-GNMTVKILEQ-AKK-VIACEIDPSCKSYFPS 90 (149)
Q Consensus 46 l~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~-v~giD~s~~~i~~a~~ 90 (149)
....++++||=.|||. |..+..+++. +.+ |++++.+++-.+.+++
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 203 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS 203 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 4455788988888743 3333444444 665 7899998888877653
No 449
>PRK07576 short chain dehydrogenase; Provisional
Probab=50.18 E-value=50 Score=24.38 Aligned_cols=38 Identities=8% Similarity=0.080 Sum_probs=25.7
Q ss_pred CCCeEEEEcCCcchhHHH----HHhcCCeEEEEeCChhHHhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVK----ILEQAKKVIACEIDPSCKSYF 88 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~----l~~~~~~v~giD~s~~~i~~a 88 (149)
+++++|-.|.+ |.++.. |++.+.+|++++.+++-++..
T Consensus 8 ~~k~ilItGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~ 49 (264)
T PRK07576 8 AGKNVVVVGGT-SGINLGIAQAFARAGANVAVASRSQEKVDAA 49 (264)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 56788888864 444443 444588999999887765544
No 450
>KOG2782|consensus
Probab=49.81 E-value=18 Score=27.09 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=46.8
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCcchhHHHHHhc--CCeEEEEeCChhHHhhhh
Q psy1134 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~i~~a~ 89 (149)
+-+...++..+.+.++.+.+|---|.|-.+..+.++ ..++++.|-+|-+-+.|+
T Consensus 29 PVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~ 84 (303)
T KOG2782|consen 29 PVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAH 84 (303)
T ss_pred ceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHH
Confidence 667888999999999999999999999999998888 458899999998777765
No 451
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=49.54 E-value=68 Score=23.27 Aligned_cols=40 Identities=8% Similarity=0.165 Sum_probs=26.0
Q ss_pred CCCeEEEEcCCcchhHHH----HHhcCCeEEEEeCChhHHhhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVK----ILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~----l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
+++++|=.|+.. .++.. |++++.+|+.++-++.-.+.+.+
T Consensus 6 ~~~~vlItGasg-~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (262)
T PRK13394 6 NGKTAVVTGAAS-GIGKEIALELARAGAAVAIADLNQDGANAVAD 49 (262)
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence 467888777644 44434 44458899999998865554433
No 452
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.46 E-value=53 Score=24.18 Aligned_cols=35 Identities=6% Similarity=0.083 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCcc-hh----HHHHHhcCCeEEEEeCChhH
Q psy1134 50 PTDTVLEIGPGTG-NM----TVKILEQAKKVIACEIDPSC 84 (149)
Q Consensus 50 ~~~~vLDiGcG~G-~~----~~~l~~~~~~v~giD~s~~~ 84 (149)
+++.+|-.|+++| .+ +..|++.+.+|+.++.+++.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~ 48 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKA 48 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhh
Confidence 5788999998752 33 33455568899988887543
No 453
>PRK07890 short chain dehydrogenase; Provisional
Probab=49.22 E-value=64 Score=23.38 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=26.7
Q ss_pred CCCeEEEEcCCcchhHHH----HHhcCCeEEEEeCChhHHhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVK----ILEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~----l~~~~~~v~giD~s~~~i~~a~ 89 (149)
+++++|=.|++.|. +.. |+++|.+|++++-++.-.+.+.
T Consensus 4 ~~k~vlItGa~~~I-G~~la~~l~~~G~~V~~~~r~~~~~~~~~ 46 (258)
T PRK07890 4 KGKVVVVSGVGPGL-GRTLAVRAARAGADVVLAARTAERLDEVA 46 (258)
T ss_pred CCCEEEEECCCCcH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 46788888875554 333 4445889999998886655443
No 454
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=49.21 E-value=37 Score=24.93 Aligned_cols=36 Identities=14% Similarity=0.292 Sum_probs=25.9
Q ss_pred CCCeEEEEcCCcch---hHHHHHhcCCeEEEEeCChhHH
Q psy1134 50 PTDTVLEIGPGTGN---MTVKILEQAKKVIACEIDPSCK 85 (149)
Q Consensus 50 ~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~i 85 (149)
+++.+|=.|++.|. ++..|++++.+|+.++.++...
T Consensus 8 ~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~ 46 (266)
T PRK06171 8 QGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDG 46 (266)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 46788988987765 3444566689999998876543
No 455
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=48.16 E-value=61 Score=23.35 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=24.6
Q ss_pred CeEEEEcCCcchhHHHHHhc----CCeEEEEeCChhHHhhhh
Q psy1134 52 DTVLEIGPGTGNMTVKILEQ----AKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 52 ~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~i~~a~ 89 (149)
+++|=.| |+|.++..+++. +.+|++++-++...+.+.
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~ 42 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAA 42 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4577777 445556565544 789999998876655443
No 456
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.95 E-value=79 Score=22.68 Aligned_cols=39 Identities=8% Similarity=0.086 Sum_probs=26.2
Q ss_pred CCCeEEEEcCCcchhHHHH----HhcCCeEEEEeCChhHHhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKI----LEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l----~~~~~~v~giD~s~~~i~~a~ 89 (149)
+++++|-.|++.|. +..+ ++++.+|+.++-++.-++.+.
T Consensus 4 ~~~~~lItG~~g~i-G~~~a~~l~~~G~~vi~~~r~~~~~~~~~ 46 (253)
T PRK08217 4 KDKVIVITGGAQGL-GRAMAEYLAQKGAKLALIDLNQEKLEEAV 46 (253)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46789988875444 3333 334789999999876555443
No 457
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=47.78 E-value=36 Score=26.03 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=27.8
Q ss_pred CeEEEEcCCc--chhHHHHHhcC--CeEEEEeCChhHHhhhhh
Q psy1134 52 DTVLEIGPGT--GNMTVKILEQA--KKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 52 ~~vLDiGcG~--G~~~~~l~~~~--~~v~giD~s~~~i~~a~~ 90 (149)
.+|.=||+|. +.++..+.+.+ ..|+++|.+++..+.+++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~ 49 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE 49 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh
Confidence 5788888875 34445555555 489999999987776654
No 458
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=47.73 E-value=79 Score=24.06 Aligned_cols=44 Identities=27% Similarity=0.486 Sum_probs=30.7
Q ss_pred cCCCCCCeEEEEcCC-cchhHHHHHhc-CCe-EEEEeCChhHHhhhh
Q psy1134 46 GAIRPTDTVLEIGPG-TGNMTVKILEQ-AKK-VIACEIDPSCKSYFP 89 (149)
Q Consensus 46 l~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~-v~giD~s~~~i~~a~ 89 (149)
+...++++||=.|+| .|..+..+++. +.+ |+++.-+++..+.++
T Consensus 161 ~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~ 207 (343)
T cd08235 161 AGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAK 207 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 455678888888865 55555555555 777 888888887777653
No 459
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=47.59 E-value=35 Score=26.43 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCcchhHHHHHh----cCCeEEEEeCChh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILE----QAKKVIACEIDPS 83 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~----~~~~v~giD~s~~ 83 (149)
++++||-.| |+|.++..+++ .+.+|++++-++.
T Consensus 3 ~~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~ 39 (349)
T TIGR02622 3 QGKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPP 39 (349)
T ss_pred CCCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence 467888877 45555555544 4889999986654
No 460
>PRK06398 aldose dehydrogenase; Validated
Probab=47.44 E-value=41 Score=24.75 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCcch---hHHHHHhcCCeEEEEeCCh
Q psy1134 50 PTDTVLEIGPGTGN---MTVKILEQAKKVIACEIDP 82 (149)
Q Consensus 50 ~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~ 82 (149)
+++++|-.|++.|. ++..|++.|.+|+.++-++
T Consensus 5 ~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~ 40 (258)
T PRK06398 5 KDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKE 40 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc
Confidence 46789999987664 4455566688999887664
No 461
>KOG1099|consensus
Probab=47.34 E-value=9.8 Score=28.71 Aligned_cols=32 Identities=16% Similarity=0.468 Sum_probs=26.7
Q ss_pred CCeEEEEcCCcchhHHHHHhc--------CC---eEEEEeCCh
Q psy1134 51 TDTVLEIGPGTGNMTVKILEQ--------AK---KVIACEIDP 82 (149)
Q Consensus 51 ~~~vLDiGcG~G~~~~~l~~~--------~~---~v~giD~s~ 82 (149)
-++++|++.-.|.++..|+++ +. ++++||+.+
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~ 84 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP 84 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc
Confidence 358999999999999999876 11 399999887
No 462
>PRK05650 short chain dehydrogenase; Provisional
Probab=47.28 E-value=72 Score=23.48 Aligned_cols=36 Identities=8% Similarity=0.148 Sum_probs=23.4
Q ss_pred eEEEEcCCcchh---HHHHHhcCCeEEEEeCChhHHhhh
Q psy1134 53 TVLEIGPGTGNM---TVKILEQAKKVIACEIDPSCKSYF 88 (149)
Q Consensus 53 ~vLDiGcG~G~~---~~~l~~~~~~v~giD~s~~~i~~a 88 (149)
++|-.|+..|.- +..|++++.+|+.++.+++-.+.+
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~ 40 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEET 40 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 577778755542 233445588999999887665543
No 463
>PRK08643 acetoin reductase; Validated
Probab=47.25 E-value=74 Score=23.08 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=25.6
Q ss_pred CCeEEEEcCCcchhHHH----HHhcCCeEEEEeCChhHHhhhhh
Q psy1134 51 TDTVLEIGPGTGNMTVK----ILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 51 ~~~vLDiGcG~G~~~~~----l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
++.+|=.|+..| ++.. |++++.+|+.++-+++..+.+..
T Consensus 2 ~k~~lItGas~g-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 44 (256)
T PRK08643 2 SKVALVTGAGQG-IGFAIAKRLVEDGFKVAIVDYNEETAQAAAD 44 (256)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 457787786655 4443 34448899999988766655443
No 464
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=46.99 E-value=60 Score=24.93 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=26.8
Q ss_pred CCCeEEEEcCC-cchhHHHHHhc-CC-eEEEEeCChhHHhhhh
Q psy1134 50 PTDTVLEIGPG-TGNMTVKILEQ-AK-KVIACEIDPSCKSYFP 89 (149)
Q Consensus 50 ~~~~vLDiGcG-~G~~~~~l~~~-~~-~v~giD~s~~~i~~a~ 89 (149)
++++||-.|+| .|..+..+++. +. .|++++.+++..+.++
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 217 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAK 217 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 57788888754 34444444554 66 7899998887777664
No 465
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=46.70 E-value=81 Score=23.43 Aligned_cols=45 Identities=22% Similarity=0.284 Sum_probs=31.8
Q ss_pred cCCCCCCeEEEEcC--CcchhHHHHHhc-CCeEEEEeCChhHHhhhhh
Q psy1134 46 GAIRPTDTVLEIGP--GTGNMTVKILEQ-AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 46 l~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~v~giD~s~~~i~~a~~ 90 (149)
+...++.+|+=.|+ +.|..+..+++. +.+|++++-+++-.+.+++
T Consensus 128 ~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 175 (305)
T cd08270 128 GGPLLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE 175 (305)
T ss_pred hCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 34345788888887 455555556655 8899999888877777654
No 466
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=46.50 E-value=57 Score=23.75 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCcchhHHHHH----hcCCeEEEEeCChhHHhhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKIL----EQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~----~~~~~v~giD~s~~~i~~a~~ 90 (149)
.++++|=.|++.| ++..++ ++|.+|+.++-+++..+...+
T Consensus 5 ~~~~vlItGas~~-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (257)
T PRK07067 5 QGKVALLTGAASG-IGEAVAERYLAEGARVVIADIKPARARLAAL 48 (257)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 3567888885544 444444 448899999988877665443
No 467
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=46.47 E-value=30 Score=26.35 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=29.0
Q ss_pred CCCeEEEEcCC-cchhHHHHHhc-CCe-EEEEeCChhHHhhhhh
Q psy1134 50 PTDTVLEIGPG-TGNMTVKILEQ-AKK-VIACEIDPSCKSYFPS 90 (149)
Q Consensus 50 ~~~~vLDiGcG-~G~~~~~l~~~-~~~-v~giD~s~~~i~~a~~ 90 (149)
+++++|=+||| .|.++..+++. +.+ |+++|.+++.++.+..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~ 187 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG 187 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh
Confidence 56788888875 45566666665 665 7788999888777654
No 468
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=46.31 E-value=58 Score=23.69 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=24.6
Q ss_pred CCeEEEEcCCcchhHHH----HHhcCCeEEEEeCChhHHhhh
Q psy1134 51 TDTVLEIGPGTGNMTVK----ILEQAKKVIACEIDPSCKSYF 88 (149)
Q Consensus 51 ~~~vLDiGcG~G~~~~~----l~~~~~~v~giD~s~~~i~~a 88 (149)
++.+|-.|++. .++.. |++++.+|+.++.++...+..
T Consensus 2 ~k~ilItG~~~-~IG~~la~~l~~~g~~vi~~~r~~~~~~~~ 42 (259)
T PRK12384 2 NQVAVVIGGGQ-TLGAFLCHGLAEEGYRVAVADINSEKAANV 42 (259)
T ss_pred CCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 45788888654 44443 445588999999887655443
No 469
>PRK06138 short chain dehydrogenase; Provisional
Probab=46.31 E-value=80 Score=22.73 Aligned_cols=39 Identities=13% Similarity=0.296 Sum_probs=25.7
Q ss_pred CCCeEEEEcCCcchhHHHH----HhcCCeEEEEeCChhHHhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKI----LEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l----~~~~~~v~giD~s~~~i~~a~ 89 (149)
+++++|=.||..| ++..+ ++++.+|++++-++.......
T Consensus 4 ~~k~~lItG~sg~-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (252)
T PRK06138 4 AGRVAIVTGAGSG-IGRATAKLFAREGARVVVADRDAEAAERVA 46 (252)
T ss_pred CCcEEEEeCCCch-HHHHHHHHHHHCCCeEEEecCCHHHHHHHH
Confidence 4678888898544 34343 444889999988776554433
No 470
>PRK06196 oxidoreductase; Provisional
Probab=46.27 E-value=65 Score=24.51 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=26.5
Q ss_pred CCCeEEEEcCCcchhHHHH----HhcCCeEEEEeCChhHHhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKI----LEQAKKVIACEIDPSCKSYF 88 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l----~~~~~~v~giD~s~~~i~~a 88 (149)
+++++|=.|++.| ++..+ +++|.+|++++-+++..+.+
T Consensus 25 ~~k~vlITGasgg-IG~~~a~~L~~~G~~Vv~~~R~~~~~~~~ 66 (315)
T PRK06196 25 SGKTAIVTGGYSG-LGLETTRALAQAGAHVIVPARRPDVAREA 66 (315)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 5678999997655 44443 44588999999887765544
No 471
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=46.10 E-value=78 Score=22.52 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=25.7
Q ss_pred CCCeEEEEcCCcchhHHHHH----hcCCeEEEEeCChhHHhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKIL----EQAKKVIACEIDPSCKSYF 88 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~----~~~~~v~giD~s~~~i~~a 88 (149)
+++++|=.|+ +|.++..++ +++..|++++-++.-.+..
T Consensus 4 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 4 QGKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 3567888887 555555554 4488899999887655443
No 472
>PRK08589 short chain dehydrogenase; Validated
Probab=45.98 E-value=72 Score=23.61 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=24.8
Q ss_pred CCCeEEEEcCCcchh---HHHHHhcCCeEEEEeCChhH
Q psy1134 50 PTDTVLEIGPGTGNM---TVKILEQAKKVIACEIDPSC 84 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~---~~~l~~~~~~v~giD~s~~~ 84 (149)
+++++|=.|++.|+- +..|+++|.+|+.++.++..
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~ 42 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAV 42 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHH
Confidence 567889889877653 33345558999999988433
No 473
>PRK07774 short chain dehydrogenase; Provisional
Probab=45.74 E-value=64 Score=23.23 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=25.4
Q ss_pred CCCeEEEEcCCcchhHHHHHh----cCCeEEEEeCChhHHhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILE----QAKKVIACEIDPSCKSYF 88 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~----~~~~v~giD~s~~~i~~a 88 (149)
+++++|=.|+ +|.++..+++ ++.+|+.++-++.-.+..
T Consensus 5 ~~k~vlItGa-sg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 5 DDKVAIVTGA-AGGIGQAYAEALAREGASVVVADINAEGAERV 46 (250)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 4677888884 4455555544 488999999887554443
No 474
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=45.72 E-value=67 Score=23.39 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCcchh---HHHHHhcCCeEEEEeCChh
Q psy1134 50 PTDTVLEIGPGTGNM---TVKILEQAKKVIACEIDPS 83 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~---~~~l~~~~~~v~giD~s~~ 83 (149)
+++++|=.|++.|.- +..|++++.+|+.++-++.
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~ 43 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL 43 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH
Confidence 467888889766543 3334555889999998764
No 475
>PRK07035 short chain dehydrogenase; Provisional
Probab=45.59 E-value=84 Score=22.72 Aligned_cols=41 Identities=15% Similarity=0.089 Sum_probs=28.6
Q ss_pred CCCeEEEEcCCcchhHH---HHHhcCCeEEEEeCChhHHhhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTV---KILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~---~l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
+++.+|=.|++.|+-.. .|++.|.+|++++-+++-++...+
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~ 50 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVAD 50 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46788999988775433 344458899999988766554443
No 476
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=45.43 E-value=29 Score=27.52 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=22.9
Q ss_pred eEEEEcCC-cchhHH-HHHhcCCeEEEEeCCh
Q psy1134 53 TVLEIGPG-TGNMTV-KILEQAKKVIACEIDP 82 (149)
Q Consensus 53 ~vLDiGcG-~G~~~~-~l~~~~~~v~giD~s~ 82 (149)
+|+-||.| +|..+. .|++.+.+|+.+|-.+
T Consensus 3 ~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 68889999 555544 5677789999999654
No 477
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=45.41 E-value=69 Score=23.58 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=32.2
Q ss_pred cCCCCCCeEEEEcC--CcchhHHHHHhc-CCeEEEEeCChhHHhhhh
Q psy1134 46 GAIRPTDTVLEIGP--GTGNMTVKILEQ-AKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 46 l~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~v~giD~s~~~i~~a~ 89 (149)
....++.+||=.|+ +.|..+..+++. +..|++++.+++..+.++
T Consensus 132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 178 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELAR 178 (320)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 44557888988885 466666666666 889999988887776653
No 478
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=45.00 E-value=14 Score=30.46 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=24.2
Q ss_pred EEEE-cCCcchhHHHHHhcCCeEEEEeCChhHHh
Q psy1134 54 VLEI-GPGTGNMTVKILEQAKKVIACEIDPSCKS 86 (149)
Q Consensus 54 vLDi-GcG~G~~~~~l~~~~~~v~giD~s~~~i~ 86 (149)
.+=| |.|.+.++..|.+.|.+|.|.|+++....
T Consensus 12 fIGIgG~GMsglA~iL~~~G~~VsGSD~~~~~~t 45 (459)
T COG0773 12 FIGIGGIGMSGLAEILLNLGYKVSGSDLAESPMT 45 (459)
T ss_pred EEeeccccHHHHHHHHHhCCCceECccccccHHH
Confidence 3443 45666677778888999999999887633
No 479
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=44.71 E-value=46 Score=25.19 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=27.7
Q ss_pred eEEEEcCCc--chhHHHHHhcCCeEEEEeCChhHHhhhh
Q psy1134 53 TVLEIGPGT--GNMTVKILEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 53 ~vLDiGcG~--G~~~~~l~~~~~~v~giD~s~~~i~~a~ 89 (149)
+|-=||+|. +.++..+++.+.+|++.|.+++.++.+.
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~ 42 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI 42 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH
Confidence 567778875 3456667777889999999998776654
No 480
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=44.61 E-value=47 Score=27.50 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=26.6
Q ss_pred eEEEEcCCcchhHHH--HHhc--CCeEEEEeCChhHHhhhhh
Q psy1134 53 TVLEIGPGTGNMTVK--ILEQ--AKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 53 ~vLDiGcG~G~~~~~--l~~~--~~~v~giD~s~~~i~~a~~ 90 (149)
+|.=+|+|..-+... |++. +.+|+|+|.+++-++..++
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~ 44 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNS 44 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHc
Confidence 466677665544433 4555 4679999999999998754
No 481
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.57 E-value=69 Score=22.87 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=26.3
Q ss_pred CCCeEEEEcCCcchhHHHH----HhcCCeEEEEeCChhHHhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKI----LEQAKKVIACEIDPSCKSYF 88 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l----~~~~~~v~giD~s~~~i~~a 88 (149)
++++||-.|++.|. +..+ ++.|.+|++++-+++-.+.+
T Consensus 4 ~~~~vlItGa~g~i-G~~~a~~l~~~G~~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 4 KGKKVAIIGVSEGL-GYAVAYFALKEGAQVCINSRNENKLKRM 45 (238)
T ss_pred CCcEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46789999986543 3333 34488999999888765544
No 482
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=44.54 E-value=78 Score=24.59 Aligned_cols=44 Identities=27% Similarity=0.320 Sum_probs=30.5
Q ss_pred cCCCCCCeEEEEcCC-cchhHHHHHhc-CCe-EEEEeCChhHHhhhh
Q psy1134 46 GAIRPTDTVLEIGPG-TGNMTVKILEQ-AKK-VIACEIDPSCKSYFP 89 (149)
Q Consensus 46 l~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~-v~giD~s~~~i~~a~ 89 (149)
....++.+||-.|+| .|..+..+++. +.. |++++-++...+.++
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~ 224 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELAR 224 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH
Confidence 445577888888774 45555666665 765 999988887776653
No 483
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=44.48 E-value=46 Score=24.30 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCcchh---HHHHHhcCCeEEEEeCCh
Q psy1134 50 PTDTVLEIGPGTGNM---TVKILEQAKKVIACEIDP 82 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~---~~~l~~~~~~v~giD~s~ 82 (149)
+++.+|-.|+..|.- +..|++.|.+|++++.++
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~ 44 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVE 44 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcc
Confidence 567899999866542 333444588999988754
No 484
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=44.38 E-value=72 Score=23.20 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCcchhHH---HHHhcCCeEEEEeCChhHHhhh
Q psy1134 50 PTDTVLEIGPGTGNMTV---KILEQAKKVIACEIDPSCKSYF 88 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~---~l~~~~~~v~giD~s~~~i~~a 88 (149)
+++++|-.|++.|.-.. .|++++.+|+.++.++...+.+
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~ 51 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHV 51 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 47889999977664332 2444588999998877665544
No 485
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=44.34 E-value=60 Score=25.48 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=29.6
Q ss_pred HHcCCCCCCeEEEEcCCcchhHHH---HHhc-CC-eEEEEeCChhHHhhhh
Q psy1134 44 DKGAIRPTDTVLEIGPGTGNMTVK---ILEQ-AK-KVIACEIDPSCKSYFP 89 (149)
Q Consensus 44 ~~l~~~~~~~vLDiGcG~G~~~~~---l~~~-~~-~v~giD~s~~~i~~a~ 89 (149)
...+..++++||=.|+ |.++.. +++. +. +|+.++-++...+.++
T Consensus 184 ~~~~~~~g~~VlV~G~--g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~ 232 (373)
T cd08299 184 NTAKVTPGSTCAVFGL--GGVGLSAIMGCKAAGASRIIAVDINKDKFAKAK 232 (373)
T ss_pred hccCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 3445567888888875 444444 4444 66 7999998887777764
No 486
>PLN02253 xanthoxin dehydrogenase
Probab=44.26 E-value=68 Score=23.72 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=26.3
Q ss_pred CCCeEEEEcCCcchhHHHH----HhcCCeEEEEeCChhHHhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKI----LEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l----~~~~~~v~giD~s~~~i~~a~ 89 (149)
+++++|-.|++.|+ +..+ +++|.+|+.++.+++..+...
T Consensus 17 ~~k~~lItGas~gI-G~~la~~l~~~G~~v~~~~~~~~~~~~~~ 59 (280)
T PLN02253 17 LGKVALVTGGATGI-GESIVRLFHKHGAKVCIVDLQDDLGQNVC 59 (280)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 46788888865444 4444 445889999998876655443
No 487
>PRK08267 short chain dehydrogenase; Provisional
Probab=44.23 E-value=65 Score=23.51 Aligned_cols=39 Identities=13% Similarity=0.223 Sum_probs=25.9
Q ss_pred CeEEEEcCCcch---hHHHHHhcCCeEEEEeCChhHHhhhhh
Q psy1134 52 DTVLEIGPGTGN---MTVKILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 52 ~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
+++|-.|++.|. ++..|++++.+|+.++-+++-++.+..
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAA 43 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 467888876543 223345558899999988877665543
No 488
>PRK08265 short chain dehydrogenase; Provisional
Probab=44.22 E-value=72 Score=23.41 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=26.0
Q ss_pred CCCeEEEEcCCcch---hHHHHHhcCCeEEEEeCChhHHhhh
Q psy1134 50 PTDTVLEIGPGTGN---MTVKILEQAKKVIACEIDPSCKSYF 88 (149)
Q Consensus 50 ~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~i~~a 88 (149)
+++++|-.|++.|. ++..|+++|.+|+.++-+++-++..
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 46 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAV 46 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46788888876553 2233445588999999887654443
No 489
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=44.17 E-value=42 Score=29.28 Aligned_cols=40 Identities=10% Similarity=0.196 Sum_probs=30.8
Q ss_pred CeEEEEcCCc--chhHHHHHhcCCeEEEEeCChhHHhhhhhh
Q psy1134 52 DTVLEIGPGT--GNMTVKILEQAKKVIACEIDPSCKSYFPSL 91 (149)
Q Consensus 52 ~~vLDiGcG~--G~~~~~l~~~~~~v~giD~s~~~i~~a~~~ 91 (149)
++|-=||+|+ +.++..++..|..|+.+|.+++.++.+.++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~ 355 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTE 355 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Confidence 4688889884 344445666799999999999999887644
No 490
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=44.16 E-value=41 Score=26.24 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=28.9
Q ss_pred HHHHcCCCCCCeEEEEcCCcchhHHH--HHhcCCeEEEEeCChh
Q psy1134 42 IVDKGAIRPTDTVLEIGPGTGNMTVK--ILEQAKKVIACEIDPS 83 (149)
Q Consensus 42 ~~~~l~~~~~~~vLDiGcG~G~~~~~--l~~~~~~v~giD~s~~ 83 (149)
+++.-....+++|+-||+|..-+... +++.+.+|+.+|.++.
T Consensus 9 ~~~~~~~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 52 (352)
T PRK12770 9 MCKEKPPPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE 52 (352)
T ss_pred hcccCCCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 34433344678999999998766543 3555889999997654
No 491
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=44.16 E-value=30 Score=26.16 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=22.0
Q ss_pred eEEEEcCCcchhHHH--HHhcCCeEEEEeCChhH
Q psy1134 53 TVLEIGPGTGNMTVK--ILEQAKKVIACEIDPSC 84 (149)
Q Consensus 53 ~vLDiGcG~G~~~~~--l~~~~~~v~giD~s~~~ 84 (149)
.|+-||+|.+-++.. |++.|.+|+.+|-++..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 588999997666555 45558999999976653
No 492
>PRK06153 hypothetical protein; Provisional
Probab=44.15 E-value=33 Score=27.78 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=23.2
Q ss_pred CCCeEEEEcCC-cchhHHH-HHhc-CCeEEEEeCC
Q psy1134 50 PTDTVLEIGPG-TGNMTVK-ILEQ-AKKVIACEID 81 (149)
Q Consensus 50 ~~~~vLDiGcG-~G~~~~~-l~~~-~~~v~giD~s 81 (149)
+..+|+=+||| +|..... |++. ..+++.+|.+
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 46789999997 5665444 5555 4689999966
No 493
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=44.13 E-value=36 Score=25.45 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=25.9
Q ss_pred EEEEcCCcchhHHHHHhc----CCeEEEEeCChhHHhh
Q psy1134 54 VLEIGPGTGNMTVKILEQ----AKKVIACEIDPSCKSY 87 (149)
Q Consensus 54 vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~i~~ 87 (149)
||=.|+ +|.++..++++ +..|+++|-++.-...
T Consensus 3 ILVtG~-tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~ 39 (314)
T COG0451 3 ILVTGG-AGFIGSHLVERLLAAGHDVRGLDRLRDGLDP 39 (314)
T ss_pred EEEEcC-cccHHHHHHHHHHhCCCeEEEEeCCCccccc
Confidence 777787 99999888776 6799999977655443
No 494
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=43.89 E-value=46 Score=27.76 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=29.6
Q ss_pred CeEEEEcCCc-c-hhHHHHHhcCCeEEEEeCChhHHhhhhh
Q psy1134 52 DTVLEIGPGT-G-NMTVKILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 52 ~~vLDiGcG~-G-~~~~~l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
++|-=||+|+ | .++..++..|..|+..|.+++.++.+.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~ 48 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARD 48 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Confidence 4677788872 3 4555666679999999999999988643
No 495
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=43.87 E-value=29 Score=28.20 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=22.4
Q ss_pred eEEEEcCCcchhHHHHHhcCCeEEEEe
Q psy1134 53 TVLEIGPGTGNMTVKILEQAKKVIACE 79 (149)
Q Consensus 53 ~vLDiGcG~G~~~~~l~~~~~~v~giD 79 (149)
.|+=||+|.|-....+++.|.+|..||
T Consensus 4 D~vvIG~G~~g~~aa~~~~g~~V~lie 30 (452)
T TIGR03452 4 DLIIIGTGSGNSIPDPRFADKRIAIVE 30 (452)
T ss_pred CEEEECCCHHHHHHHHHHCCCeEEEEe
Confidence 588899999887777666689998888
No 496
>PRK12939 short chain dehydrogenase; Provisional
Probab=43.75 E-value=1.1e+02 Score=21.93 Aligned_cols=39 Identities=10% Similarity=0.026 Sum_probs=25.9
Q ss_pred CCCeEEEEcCCcchhHHHHHh----cCCeEEEEeCChhHHhhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVKILE----QAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~l~~----~~~~v~giD~s~~~i~~a~ 89 (149)
+++++|=.|++ |.++..+++ ++.+|++++-+++-++...
T Consensus 6 ~~~~vlItGa~-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 6 AGKRALVTGAA-RGLGAAFAEALAEAGATVAFNDGLAAEARELA 48 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 46788877764 444555443 4889999988877555443
No 497
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=43.72 E-value=1.1e+02 Score=23.25 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=26.7
Q ss_pred CCCeEEEEcCCcchh---HHHHHhcCCeEEEEeCChhHHhhhh
Q psy1134 50 PTDTVLEIGPGTGNM---TVKILEQAKKVIACEIDPSCKSYFP 89 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~---~~~l~~~~~~v~giD~s~~~i~~a~ 89 (149)
+++++|-.|+..|+- +..|+++|.+|+.++-++.-.+.+.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~ 47 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAA 47 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 467888888766542 3334455889999988776555443
No 498
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=43.68 E-value=1e+02 Score=22.39 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=26.1
Q ss_pred CCCeEEEEcCCcchhHHH----HHhcCCeEEEEeCChhHHhhh
Q psy1134 50 PTDTVLEIGPGTGNMTVK----ILEQAKKVIACEIDPSCKSYF 88 (149)
Q Consensus 50 ~~~~vLDiGcG~G~~~~~----l~~~~~~v~giD~s~~~i~~a 88 (149)
.++.+|=.|++.|. +.. |+++|.+|+.++-++.-+...
T Consensus 8 ~~k~~lItGas~gi-G~~ia~~L~~~G~~vvl~~r~~~~~~~~ 49 (254)
T PRK08085 8 AGKNILITGSAQGI-GFLLATGLAEYGAEIIINDITAERAELA 49 (254)
T ss_pred CCCEEEEECCCChH-HHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 56788888866544 333 344488999999887665544
No 499
>PRK06181 short chain dehydrogenase; Provisional
Probab=43.64 E-value=86 Score=22.83 Aligned_cols=36 Identities=6% Similarity=0.144 Sum_probs=23.1
Q ss_pred CeEEEEcCCcchhHHHH----HhcCCeEEEEeCChhHHhhh
Q psy1134 52 DTVLEIGPGTGNMTVKI----LEQAKKVIACEIDPSCKSYF 88 (149)
Q Consensus 52 ~~vLDiGcG~G~~~~~l----~~~~~~v~giD~s~~~i~~a 88 (149)
+++|-.|+.. .++..+ ++.+.+|++++-++.-.+..
T Consensus 2 ~~vlVtGasg-~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~ 41 (263)
T PRK06181 2 KVVIITGASE-GIGRALAVRLARAGAQLVLAARNETRLASL 41 (263)
T ss_pred CEEEEecCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 4677777544 344443 44488999999887655543
No 500
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=43.53 E-value=47 Score=27.73 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=29.5
Q ss_pred CCeEEEEcCCc--chhHHHHHhcCCeEEEEeCChhHHhhhhh
Q psy1134 51 TDTVLEIGPGT--GNMTVKILEQAKKVIACEIDPSCKSYFPS 90 (149)
Q Consensus 51 ~~~vLDiGcG~--G~~~~~l~~~~~~v~giD~s~~~i~~a~~ 90 (149)
-++|-=||+|+ ..++..++..|..|+.+|.+++.++.+.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~ 46 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIA 46 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Confidence 34677888873 24444566668999999999999987643
Done!