RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1134
(149 letters)
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 111 bits (280), Expect = 5e-31
Identities = 45/58 (77%), Positives = 52/58 (89%)
Query: 25 NKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
N GQHILKNPLII SI+DK A+RPTD VLE+GPGTGNMTVK+LE+AKKV+ACE+DP
Sbjct: 3 NTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDP 60
Score = 57.7 bits (140), Expect = 6e-11
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 100 QEVPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHFA 149
+P DF I I +L F+DKRAR+MD+DDF+ LL FN GIHF+
Sbjct: 236 IIIPEDFSIADKIQQILTSTGFSDKRARSMDIDDFIRLLHGFNAEGIHFS 285
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 109 bits (275), Expect = 3e-30
Identities = 31/61 (50%), Positives = 40/61 (65%)
Query: 22 IQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEID 81
+ GQH+LKNP I+ I+ I+ +D VLEIG GTGN+TVK+L AKKVI +ID
Sbjct: 14 RENLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDID 73
Query: 82 P 82
Sbjct: 74 S 74
Score = 60.1 bits (146), Expect = 1e-11
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 100 QEVPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHF 148
++VP +F K VL ++ +KR+ +D +DF+ LL FNK GIHF
Sbjct: 248 KQVPVNFPFKKYCLDVLEHLDMCEKRSINLDENDFLKLLLEFNKKGIHF 296
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 97.7 bits (244), Expect = 1e-25
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 22 IQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEID 81
+ K GQ L + + V+ + D VLEIG G G +T ++ + AKKV EID
Sbjct: 22 FKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEID 81
Query: 82 P 82
Sbjct: 82 K 82
Score = 26.4 bits (59), Expect = 3.8
Identities = 6/37 (16%), Positives = 16/37 (43%)
Query: 108 IKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKH 144
++ ++T N +++ + + D V L F +
Sbjct: 252 LEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYRF 288
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR
{Streptococcus pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 81.8 bits (203), Expect = 6e-20
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 22 IQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEID 81
+ N + Q+ L + ++ I+ + ++ TDTV EIG G G++T K+ + +K+V + E+D
Sbjct: 1 MNKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELD 60
Query: 82 P 82
Sbjct: 61 S 61
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein
synthesis; 1.98A {Coxiella burnetii}
Length = 255
Score = 80.2 bits (199), Expect = 2e-19
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 22 IQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEID 81
+ K FGQH L + ++Q IV + TDT++EIGPG G +T +L + + EID
Sbjct: 1 MPMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEID 60
Query: 82 PSC 84
Sbjct: 61 RDL 63
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 79.9 bits (198), Expect = 2e-19
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 22 IQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEID 81
+ N Q+ + + I I+ + D + EIG G G+ T++++++ V A EID
Sbjct: 2 NEKNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEID 61
Query: 82 P 82
Sbjct: 62 H 62
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA
methyltransferase, mtase, anti resistance,
methyltransferase, RNA-binding; 1.44A {Aquifex
aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Length = 249
Score = 77.5 bits (192), Expect = 2e-18
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 22 IQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEI 80
++ K FGQH+L + +++ I ++ I +TV+E+G GTGN+T +L+ KK+ E+
Sbjct: 3 VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL 62
Query: 81 DPSC 84
D
Sbjct: 63 DREM 66
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 78.4 bits (193), Expect = 4e-18
Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 11/130 (8%)
Query: 19 KICIQFNKDFGQHILKNPLIIQSIVDKGAIRPT------DTVLEIGPGTGNMTVKILE-- 70
K + +G L NP + I DK + T VL++ PG G +
Sbjct: 21 KDISKLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKY 80
Query: 71 QAKKVIACEIDPSCKSYFPSLYYFRNLCLQEVPTDF-DIKTLIDTVLNEINFADKRARTM 129
++ E S + + + LQ + D D T + + E F + +
Sbjct: 81 CPRQYSLLEKRSSLYKFLNAKFE--GSPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSD 138
Query: 130 DLDDFVLLLA 139
++D L +A
Sbjct: 139 HINDKFLTVA 148
Score = 29.9 bits (67), Expect = 0.32
Identities = 5/37 (13%), Positives = 15/37 (40%)
Query: 107 DIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNK 143
+ ++ + + + K + D+F+ L F +
Sbjct: 296 GGQQYFNSRITDKDLLKKCPIDLTNDEFIYLTKLFME 332
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle
structural genomics center for infectio disease; 1.75A
{Burkholderia pseudomallei}
Length = 279
Score = 74.9 bits (185), Expect = 3e-17
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 22 IQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ----AKKVIA 77
K FGQ+ L + +I +IV + ++EIGPG G +T ++ + + A
Sbjct: 14 HFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHA 73
Query: 78 CEIDPSC 84
E+D
Sbjct: 74 VELDRDL 80
>3fut_A Dimethyladenosine transferase; methyltransferase,
dimethyltransferase, dual-specific methyltransferase,
16S rRNA methyltransferase; 1.52A {Thermus
thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Length = 271
Score = 74.1 bits (183), Expect = 6e-17
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 22 IQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEID 81
+ +K FGQ+ L + ++ IV+ V E+GPG G +T +LE +V A E D
Sbjct: 19 LFADKRFGQNFLVSEAHLRRIVEAARPFT-GPVFEVGPGLGALTRALLEAGAEVTAIEKD 77
Query: 82 PSC 84
Sbjct: 78 LRL 80
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet;
adenosine dimethyltransferase, rRNA modification,
transferase, translation; 2.10A {Escherichia coli}
SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Length = 252
Score = 70.6 bits (174), Expect = 8e-16
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 30 QHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSC 84
Q+ L + +I SIV + ++EIGPG +T + E+ ++ E+D
Sbjct: 1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDL 55
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics,
PSI-2, protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 44.8 bits (106), Expect = 2e-06
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 40 QSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
+ I++ + VLE G GTGN+T K+L + V I+PS
Sbjct: 35 EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYG--IEPS 76
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 43.7 bits (103), Expect = 5e-06
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
I+ +I++ + + +IG GTG +V + Q V A E
Sbjct: 20 IRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSI 66
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 42.3 bits (100), Expect = 8e-06
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 42 IVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
+ +++ G G G +LE A K+ +I+
Sbjct: 9 YLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINV 49
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 42.8 bits (101), Expect = 1e-05
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK---KVIACEIDPS 83
+ ++ + ++ TVL++G G G + + KV A ++
Sbjct: 26 PEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEE 73
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 42.6 bits (100), Expect = 1e-05
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 46 GAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
LE+G GTG + + ++ + + IA + D +
Sbjct: 35 HPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAA 72
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 40.9 bits (96), Expect = 4e-05
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
+ ++ A++ + VL++ G G++ KKV+A ++
Sbjct: 26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTED 70
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 40.3 bits (94), Expect = 6e-05
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 47 AIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
A VLE+ GTG T + A +V A +D S
Sbjct: 43 AGNIRGDVLELASGTGYWTRHLSGLADRVTA--LDGS 77
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 40.5 bits (95), Expect = 6e-05
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 42 IVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
++ R VL+IG G G+ + ++ I +
Sbjct: 13 MIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKE 54
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus}
SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 40.0 bits (94), Expect = 7e-05
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 47 AIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
D +++G GTG +T+++ + ++V A + +P
Sbjct: 30 EPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNP 65
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 40.0 bits (93), Expect = 7e-05
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 47 AIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
+ P VLE G G G + QA + A D S
Sbjct: 45 LLTPQTRVLEAGCGHGPDAARFGPQAARWAA--YDFS 79
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 39.9 bits (93), Expect = 7e-05
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 30 QHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
++K P+ + + V++ G GN T + +KKV A ++
Sbjct: 2 NAMIKRPIHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQE 54
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 40.0 bits (93), Expect = 1e-04
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK---KVIACEIDPSC 84
P I ++ D +++ G G+G M + KV A E
Sbjct: 98 PKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEF 149
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 39.4 bits (92), Expect = 1e-04
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 42 IVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSY 87
+ A R + + +IG G+G+++V+ + I E
Sbjct: 47 TLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIEN 92
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 39.6 bits (92), Expect = 1e-04
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 29 GQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSC 84
I+ P I K + VLE G G+G + + E A +V E
Sbjct: 71 KTQIIY-PKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEF 125
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 39.1 bits (92), Expect = 1e-04
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 47 AIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
+ D V+++G G+G MTV+I ++ K V A +
Sbjct: 32 NLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLD 67
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 39.4 bits (92), Expect = 2e-04
Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 40 QSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
+ ++ +P + +L++G GTG +T KI + +V+ D +
Sbjct: 47 EDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLG--TDNA 88
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 38.7 bits (91), Expect = 2e-04
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 28 FGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
GQ I + P ++ + + + P VLEIG G+G T + + V + E
Sbjct: 56 QGQTISQ-PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKG 110
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET:
SAM; 2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 38.4 bits (89), Expect = 2e-04
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 33 LKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK---KVIACEIDPS 83
+KN L K ++ DTV++ G GN T + +V +I
Sbjct: 5 IKNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDK 58
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L
protein, methyltransferase domain; 1.85A {Lactobacillus
casei}
Length = 275
Score = 38.1 bits (88), Expect = 5e-04
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 40 QSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK---KVIACEIDPS 83
+I + ++P + +LEIG G G+++ + +Q V +I
Sbjct: 33 LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASP 79
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN
joint center for structural genomics, JCSG; HET: SAH;
2.11A {Anabaena variabilis atcc 29413}
Length = 245
Score = 37.3 bits (86), Expect = 8e-04
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
P +++ G G T + + +VI +D S
Sbjct: 54 FNPELPLIDFACGNGTQTKFLSQFFPRVIG--LDVS 87
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 36.4 bits (84), Expect = 0.001
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 42 IVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK--KVIACEIDPS 83
+ P VLE G G G TV + + ++ + +I P
Sbjct: 29 LHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPE 72
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 36.4 bits (83), Expect = 0.002
Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 35 NPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSY 87
+ ++ ++D+ + D +++G G G + +++ K E Y
Sbjct: 158 SFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKY 212
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 36.0 bits (83), Expect = 0.002
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
++ VL++G G G T K+ K + +D S
Sbjct: 51 VKKEAEVLDVGCGDGYGTYKLSRTGYKAVG--VDIS 84
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 35.7 bits (82), Expect = 0.002
Identities = 9/61 (14%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 29 GQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK--KVIACEIDPSCKS 86
+ I K + ++ K ++ + +IG G+ +++++ ++ A E +P
Sbjct: 20 KKLITKQEVRAVTL-SKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLG 78
Query: 87 Y 87
+
Sbjct: 79 F 79
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 35.8 bits (82), Expect = 0.002
Identities = 8/51 (15%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKI---LEQAKKVIACEIDPS 83
P ++D+ ++++G G G T+++ L+ +++I ++ +
Sbjct: 22 PSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSAT 72
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 35.3 bits (82), Expect = 0.004
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 43 VDKGAIRPTDTVLEIGPGT-GNMTVKILEQ--AKKVIACEIDPS 83
VD I+ TV +G G G +TV++ A VI +
Sbjct: 175 VDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQAT 218
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 34.7 bits (80), Expect = 0.004
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 32 ILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK--KVIACEIDPSCKSY 87
+ K + +I A +P +T+ +IG G+G++ ++ L + EI +
Sbjct: 8 LTKQHVRALAI-SALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRER 64
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 35.2 bits (80), Expect = 0.005
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 13/86 (15%)
Query: 4 PNVDKLNYYVCRTVWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGN 63
P +KL +Y + N +G+ P + + + ++ DT +++G G GN
Sbjct: 207 PQANKLKHYKAFS--------NYVYGE---LLPNFLSDVYQQCQLKKGDTFMDLGSGVGN 255
Query: 64 MTVKILEQ--AKKVIACEIDPSCKSY 87
V+ + CEI
Sbjct: 256 CVVQAALECGCALSFGCEIMDDASDL 281
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related
protein; ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 34.8 bits (80), Expect = 0.006
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
++ VL++G GTG ++ + E+ +V+ +
Sbjct: 52 LKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKE 87
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 34.6 bits (79), Expect = 0.007
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK---KVIACEIDP 82
P IV I P D ++E G G+G +T+ + +V++ EI
Sbjct: 79 PKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIRE 128
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 34.7 bits (79), Expect = 0.007
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 42 IVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK---KVIACEIDP 82
I+ + +RP +LE+G G+GNM+ IL + E D
Sbjct: 102 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDE 145
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 34.1 bits (79), Expect = 0.007
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 47 AIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
+ VLEIG G G T I E KV++ EI+
Sbjct: 67 DLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEK 103
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 34.4 bits (78), Expect = 0.009
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 38 IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK--KVIACEIDPS 83
++++ G R + + IG G +T +L +V EI+P
Sbjct: 110 LLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPD 157
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima}
SCOP: c.66.1.41
Length = 219
Score = 34.0 bits (78), Expect = 0.009
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Query: 47 AIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
+ P +EIG GTG K I ++PS
Sbjct: 44 CLLPEGRGVEIGVGTGRF----AVPLKIKIG--VEPS 74
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 34.0 bits (78), Expect = 0.010
Identities = 11/49 (22%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK-KVIACEIDPS 83
P+I ++I+++ I T ++IG G G +++ + +Q+ + A +
Sbjct: 30 PIIAENIINRFGITA-GTCIDIGSGPGALSIALAKQSDFSIRALDFSKH 77
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative, northeast structural
genomics consortium, NESG; HET: SAH; 2.30A {Bacillus
cereus} PDB: 2gh1_A
Length = 284
Score = 33.8 bits (77), Expect = 0.013
Identities = 7/63 (11%), Positives = 20/63 (31%), Gaps = 12/63 (19%)
Query: 24 FNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK---KVIACEI 80
+N D+ ++ I +++ G G G + + ++ K +
Sbjct: 5 YNDDYVSFLVNTVW---------KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDS 55
Query: 81 DPS 83
+
Sbjct: 56 GET 58
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 33.6 bits (77), Expect = 0.013
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 45 KGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
KG + P +++LE+G GTG ++ + + E +
Sbjct: 31 KGLLPPGESLLEVGAGTGYWLRRL--PYPQKVGVEPSEA 67
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 33.3 bits (76), Expect = 0.017
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
++ I + A R VL++ GTG T+++ E+ +V+ +D
Sbjct: 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVG--LDLH 72
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 33.2 bits (76), Expect = 0.019
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 13/89 (14%)
Query: 34 KNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS----CKSYFP 89
NP +++ I + VL+IG +G + I E +V E P K
Sbjct: 21 VNPNLLKHIKKEWK-----EVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLD 75
Query: 90 SLYYFRNLCLQEVPTD---FDIKTLIDTV 115
+ ++ ++P + FD D +
Sbjct: 76 HVVL-GDIETMDMPYEEEQFDCVIFGDVL 103
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 32.9 bits (75), Expect = 0.023
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 7/70 (10%)
Query: 53 TVLEIGPGTGNMTVKILEQAKKVIACEIDPS----CKSYFPSLYYFRNLCLQEVPTD--F 106
+LE+G G+ T ++ E + E + + + ++ +
Sbjct: 45 NLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRY 104
Query: 107 DIKTLIDTVL 116
D L VL
Sbjct: 105 DNIVLTH-VL 113
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 32.9 bits (74), Expect = 0.024
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTV---KILEQAKKVIACEIDP 82
P I I+ I P DTVLE G G+G M++ K + +VI+ E+
Sbjct: 91 PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRK 140
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 32.4 bits (73), Expect = 0.037
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 47 AIRPTDTVLEIGPGTGNMTVKILEQAK---KVIACEIDP 82
+RP V + G + + + A +++ + DP
Sbjct: 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDP 153
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 32.2 bits (73), Expect = 0.040
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 47 AIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
+ VLE+ G G +T L+ +V A ++ S
Sbjct: 79 TGPVSGPVLELAAGMGRLTFPFLDLGWEVTA--LELS 113
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 32.4 bits (74), Expect = 0.043
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 47 AIRPTDTVLEIGPGTG-NMTV--KILEQAKKVIACEIDPS 83
+ VLEIG GTG N V +++ + V++ E
Sbjct: 72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRK 111
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 32.1 bits (74), Expect = 0.046
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 47 AIRPTDTVLEIGPGTGNMTV---KILEQAKKVIACEIDPS 83
++P VLEIG G G +I+ + V++ E P
Sbjct: 74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPE 113
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 31.7 bits (72), Expect = 0.047
Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 19/110 (17%)
Query: 27 DFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS--- 83
G I +I ++ +GA +L+ G G G + + +Q V+ D
Sbjct: 28 AAGNDIYGEARLIDAMAPRGA-----KILDAGCGQGRIGGYLSKQGHDVLG--TDLDPIL 80
Query: 84 ---CKSYFPSLYYF----RNLCLQEVPTDFDIKTLIDTVLNEINFADKRA 126
K FP + + E FD+ V+ + +
Sbjct: 81 IDYAKQDFPEARWVVGDLSVDQISETD--FDLIVSAGNVMGFLAEDGREP 128
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 32.1 bits (73), Expect = 0.048
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 49 RPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
LEIG G T K+ K++ ID
Sbjct: 50 GAVSNGLEIGCAAGAFTEKLAPHCKRLTV--IDVM 82
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 31.8 bits (72), Expect = 0.052
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS----CKSYFPSLYYFRNLCLQEVP 103
+ VL+IG G G E+ + I +I+ C+ F + L+ +P
Sbjct: 39 FKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLP 98
Query: 104 TD-FDIKTLIDTV 115
D + V
Sbjct: 99 DKYLDGVMISHFV 111
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 31.8 bits (73), Expect = 0.053
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 43 VDKGAIRPTDTVLEIGPGT-GNMTVKILEQ--AKKVIACEIDPS 83
V+ IG GT G + ++ AK V A +I
Sbjct: 153 FHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSE 196
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 32.0 bits (72), Expect = 0.055
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK---KVIACEIDPS 83
P ++V + P VLE G G+G +T+ + V + E P
Sbjct: 82 PKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPH 132
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 32.0 bits (73), Expect = 0.056
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 45 KGAIRPTDTVLEIGPGT-GNMTVKILEQ--AKKVIACEIDPS 83
G IRP D V+ +G G G V IL+ A KVI E
Sbjct: 208 GGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEV 249
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 31.7 bits (72), Expect = 0.067
Identities = 8/36 (22%), Positives = 21/36 (58%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
++ D +L+IG G+G +++++ + V +I+
Sbjct: 28 LQEDDEILDIGCGSGKISLELASKGYSVTGIDINSE 63
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 31.3 bits (71), Expect = 0.067
Identities = 8/53 (15%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 31 HILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
++ + +++ A +L++G GTG T + ++ ++P+
Sbjct: 22 TVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQIEG--LEPA 72
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 31.3 bits (71), Expect = 0.071
Identities = 7/35 (20%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 49 RPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
R + VL++G G G + + ++ + + +D
Sbjct: 51 RQPERVLDLGCGEGWLLRALADRGIEAVG--VDGD 83
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 31.5 bits (70), Expect = 0.078
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 53 TVLEIGPGTGNMTVKILEQ--AKKVIACEIDP 82
VL++G G++T+ I + +++ +ID
Sbjct: 49 DVLDLGCNVGHLTLSIACKWGPSRMVGLDIDS 80
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 31.4 bits (72), Expect = 0.079
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 43 VDKGAIRPTDTVLEIGPG-TGNMTVK--ILEQAKKVIACEIDPSC 84
+ I+ DTV IG G G M+V A ++ A C
Sbjct: 159 AELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHC 203
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 31.1 bits (70), Expect = 0.087
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 47 AIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
D V++ G G T++ +VIA +IDP
Sbjct: 75 QSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDP 110
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 31.0 bits (70), Expect = 0.090
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
++ VL++ G G + + + +V+ +D S
Sbjct: 36 MKKRGKVLDLACGVGGFSFLLEDYGFEVVG--VDIS 69
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
SAM; 1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 31.0 bits (70), Expect = 0.10
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 46 GAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
G + +LE+G G G +L V A D S
Sbjct: 39 GELPAGAKILELGCGAGYQAEAMLAAGFDVDA--TDGS 74
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 31.0 bits (70), Expect = 0.11
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 47 AIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPS 83
+ ++G G GN T + ++ + ID
Sbjct: 30 PLERVLNGYDLGCGPGNSTELLTDRYGVNVITG--IDSD 66
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.12
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 36 PLIIQSIVD-KGAIRPTDT-VLEIGPGT----GNMTVKILEQ--AKKVIACEIDPS 83
II+ V + + T +L+ GPG G +T + + + ++A +D +
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDIN 536
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 30.9 bits (69), Expect = 0.15
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 40 QSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCK 85
++ TVL++G G+G + + + A+KV A E
Sbjct: 53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMAD 99
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.6 bits (69), Expect = 0.18
Identities = 8/50 (16%), Positives = 13/50 (26%), Gaps = 23/50 (46%)
Query: 101 EVPTDFDIKT-LIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHFA 149
++PT ++ KT I D + D F
Sbjct: 989 QIPTGWNAKTYGIS---------DDIISQV--DPI-----------TLFV 1016
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus
pneumoniae} PDB: 3ku1_A*
Length = 225
Score = 30.2 bits (68), Expect = 0.19
Identities = 7/37 (18%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDP 82
+ +L++G + ++++E+ K IA E+
Sbjct: 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVE 49
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 30.2 bits (68), Expect = 0.20
Identities = 13/113 (11%), Positives = 36/113 (31%), Gaps = 19/113 (16%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS------CKSYFPSLY 92
+ ++V + + + ++L++ GTG + + V ++ S + P
Sbjct: 40 LAALVRRHSPKA-ASLLDVACGTGMHLRHLADSFGTVEG--LELSADMLAIARRRNPDAV 96
Query: 93 YFR-NLCLQEVPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKH 144
++ + F T + + + + + L F H
Sbjct: 97 LHHGDMRDFSLGRRFSAVTCMFSSIGHL---------AGQAELDAALERFAAH 140
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 30.4 bits (68), Expect = 0.20
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 40 QSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCK 85
+I+ + VL++G GTG +++ + AK VI ++ +
Sbjct: 28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIE 74
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 29.9 bits (67), Expect = 0.24
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDP 82
I + + +IG + ++ A IA E+
Sbjct: 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVD 55
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural
genomics, midwest CENT structural genomics, protein
structure initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 29.9 bits (67), Expect = 0.25
Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDP 82
+ +L++G + + +L+ IA E+
Sbjct: 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVN 55
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 29.8 bits (68), Expect = 0.27
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 43 VDKGAIRPTDTVLEIGPGT-GNMTVKILEQ--AKKVIACEIDPS 83
V G+ +VL G G G M ++ A ++ + +P
Sbjct: 157 VYAGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPY 200
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 30.1 bits (67), Expect = 0.27
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
IR V+++ G G + ++ +A + I E +
Sbjct: 91 IREGTKVVDLTGGLGIDFIALMSKASQGIYIERND 125
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 30.0 bits (67), Expect = 0.28
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
++ VL++ GTG ++ ++E+ V + +D S
Sbjct: 46 KAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTS--VDAS 88
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 29.7 bits (67), Expect = 0.29
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 49 RPTDTVLEIGPGTGNMTVKILEQAK--KVIACEIDPS 83
+L++G GTG ++ ++E+ +D S
Sbjct: 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTL--VDMS 77
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 29.5 bits (67), Expect = 0.36
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 43 VDKGAIRPTDTVLEIGPGT-GNMTVKILEQ--AKKVIACEIDPSC 84
+G + VL G G G +T+ + + A +V+ ++ +
Sbjct: 164 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATR 208
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.36
Identities = 22/148 (14%), Positives = 47/148 (31%), Gaps = 26/148 (17%)
Query: 13 VCRTVWKICIQFNK----DFGQHILKNPLI--IQSIVDKGAIRPTDTVLEIGPGTGNMTV 66
VC + C K + ++ +Q ++ + I P T + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ--IDPNWTSRSDHSSNIKLRI 227
Query: 67 KILEQAKKVIACEIDPSCKSYFPSLYYFRNLCLQEVPTDFDI--KTLIDT----VLNEIN 120
++ + + K Y L N+ + F++ K L+ T V + ++
Sbjct: 228 HSIQAELRRLLKS-----KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 121 FADKRARTMDLDDFVL-------LLATF 141
A ++D L LL +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKY 310
Score = 27.9 bits (61), Expect = 1.6
Identities = 23/156 (14%), Positives = 46/156 (29%), Gaps = 44/156 (28%)
Query: 13 VCRTVW--KICIQFNKDFGQHILKNPLII---QSIVDK-GAIRPTDTVLEIGPG------ 60
V V K F + IL + + + D A T L+
Sbjct: 249 VLLNVQNAKAWNAF--NLSCKIL----LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 61 TGNMTVKILEQAKKVI---ACEIDPSCKSYFPSLYYFRNLCLQEVPTDFD---------I 108
++ +K L+ + + +P S +++ +D +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES-------IRDGLATWDNWKHVNCDKL 355
Query: 109 KTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKH 144
T+I++ LN + A+ R L+ F
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDR-------LSVFPPS 384
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase
fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A
{Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A*
2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 29.7 bits (66), Expect = 0.36
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 46 GAIRPTDTVLEIGPGTGNMTVKILEQAKK------VIACEIDPS 83
G + +L IG G G + ++IL + + + ++PS
Sbjct: 48 GDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPS 91
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 29.6 bits (66), Expect = 0.38
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 40 QSIVDKGAIRPTDTVLEIGPGTG---NMTVKILEQAKKVIACEIDPSCK 85
S+ + VL++G GTG K A+KVI E
Sbjct: 56 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSSISD 102
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 29.4 bits (65), Expect = 0.38
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK---KVIACEIDP 82
P IV +G I P VLE G G+G +T+ +L +VI+ E
Sbjct: 85 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRA 134
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine
synthase, riken STR genomics/proteomics initiative,
RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB:
3anx_A*
Length = 314
Score = 29.2 bits (66), Expect = 0.41
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 54 VLEIGPGTGNMTVKIL--EQAKKVIACEIDPS----CKSYFPSL 91
VL +G G G ++L +K + +ID K + P
Sbjct: 81 VLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEW 124
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 29.4 bits (66), Expect = 0.41
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 42 IVDKGAIRPTDTVLEIGPGTGNMTVKILEQ 71
+ ++P +L++G G+G M
Sbjct: 28 LGRVLRMKPGTRILDLGSGSGEMLCTWARD 57
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 29.1 bits (66), Expect = 0.42
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 47 AIRPTDTVLEIGPGTGNMTVKILEQAK-KVIACEIDPS 83
++P +LE+G G+G I E K V E P
Sbjct: 88 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPE 125
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 29.0 bits (65), Expect = 0.44
Identities = 12/113 (10%), Positives = 35/113 (30%), Gaps = 19/113 (16%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS------CKSYFPSLY 92
I +V ++L++ GTG ++ ++ S + P
Sbjct: 30 IADLVRS-RTPEASSLLDVACGTGTHLEHFTKEFGDTAG--LELSEDMLTHARKRLPDAT 86
Query: 93 YFR-NLCLQEVPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKH 144
+ ++ + F + + + + ++ +A+F +H
Sbjct: 87 LHQGDMRDFRLGRKFSAVVSMFSSVGYL---------KTTEELGAAVASFAEH 130
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 29.1 bits (66), Expect = 0.45
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 48 IRPTDTVLEIGPGTGNMTV---KILEQAKKVIACEIDPS 83
+ L++G G+G +T +++ KVI +
Sbjct: 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKE 113
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 29.3 bits (65), Expect = 0.49
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 41 SIVDKGAIRPTDTVLEIGPGTGNMTVKILE---QAKKVIACEIDPS 83
S + TVL++G GTG + + KVI ++ +
Sbjct: 74 STLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDN 119
>2o07_A Spermidine synthase; structural genomics, structural genomics
consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo
sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A*
3rw9_A*
Length = 304
Score = 29.2 bits (66), Expect = 0.49
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 54 VLEIGPGTGNMTVKIL--EQAKKVIACEIDPS----CKSYFPSL 91
VL IG G G + +++ + V+ CEID K + P +
Sbjct: 99 VLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGM 142
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 28.7 bits (65), Expect = 0.51
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 48 IRPTDTVLEIGPGTG-------NMTVKILEQAKKVIACEIDPS 83
++P +++G G+G + + VI E
Sbjct: 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKD 120
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 28.9 bits (64), Expect = 0.55
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 40 QSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCK 85
I I VL++G GTG +++ + AKKV+ +
Sbjct: 54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY 100
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1;
HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 28.7 bits (64), Expect = 0.59
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 32 ILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA-KKVIACEIDPS 83
I++ P + + + TVL+ G G + I + K I+ S
Sbjct: 5 IIRQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYG--IEIS 55
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 28.6 bits (64), Expect = 0.63
Identities = 7/36 (19%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 47 AIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
VL++G TG +T ++ ++ V++ +++
Sbjct: 20 EGLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNI 54
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 28.9 bits (64), Expect = 0.64
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 40 QSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCK 85
++I+ VL++G G+G ++ + A+K+ A E +
Sbjct: 148 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQ 194
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 28.7 bits (65), Expect = 0.64
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 43 VDKGAIRPTDTVLEIGPGT-GNMTVKILEQ--AKKVIACEIDPS 83
+ + +R D VL G G G +T+ + A ++ +ID
Sbjct: 172 LQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEG 215
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 28.5 bits (64), Expect = 0.67
Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 23/117 (19%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS----------CKSYF 88
I + + D L++ GTGN+T + + K A +D S +S
Sbjct: 27 IIEKCVENNLVF-DDYLDLACGTGNLTENLCPKFKNTWA--VDLSQEMLSEAENKFRSQG 83
Query: 89 PSLYYFR-NLCLQEVPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKH 144
++ + FD+ T N I +D DD + H
Sbjct: 84 LKPRLACQDISNLNINRKFDLITCCLDSTNYI---------IDSDDLKKYFKAVSNH 131
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 28.6 bits (64), Expect = 0.68
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK-KVIACEIDP 82
+ I+ + VL+IG G G + I E+ +I
Sbjct: 44 TKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICS 88
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics,
niaid, national institute of allergy AN infectious
diseases; 1.75A {Burkholderia thailandensis}
Length = 432
Score = 28.6 bits (64), Expect = 0.68
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 5/36 (13%)
Query: 53 TVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYF 88
V+E G GTG + +L + Y
Sbjct: 140 RVMEFGAGTGKLAAGLLTALAAL-----GVELDEYA 170
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 27.7 bits (62), Expect = 0.69
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 14/65 (21%)
Query: 18 WKICIQFNKDFGQHILKNPLIIQSIV-----DKGAIRPTDTVLEI-GPGTGNMTVKILEQ 71
W + DF Q PL+I I + P D +L I G GT +MT
Sbjct: 17 WGFRLSGGIDFNQ-----PLVITRITPGSKAAAANLCPGDVILAIDGFGTESMT---HAD 68
Query: 72 AKKVI 76
A+ I
Sbjct: 69 AQDRI 73
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine
methyltransferase, structural genomics, PSI, protein
structure initiative; HET: SAH; 1.25A {Mus musculus}
PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Length = 252
Score = 28.7 bits (63), Expect = 0.70
Identities = 7/54 (12%), Positives = 15/54 (27%)
Query: 35 NPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYF 88
+ L+ + + + V G ++ V+ EI F
Sbjct: 53 HQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREF 106
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase,
BFR250, NESG, structural genomics, PSI-2; HET: SAM;
1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A
3t7s_A* 3t7r_A* 3t7t_A*
Length = 267
Score = 28.7 bits (64), Expect = 0.70
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPS 83
+ + +IG GTG T+ + +V +
Sbjct: 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSG 80
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping;
HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP:
c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A*
2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A*
1g38_A*
Length = 421
Score = 28.5 bits (63), Expect = 0.77
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILE---QAKKVIACEIDP 82
P ++ +V VLE G E A + + EIDP
Sbjct: 25 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDP 74
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 28.5 bits (63), Expect = 0.77
Identities = 5/35 (14%), Positives = 16/35 (45%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
+ +++G G T +++++ V + + P
Sbjct: 209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP 243
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure
initiative; 1.75A {Thermoplasma acidophilum} SCOP:
c.66.1.32
Length = 200
Score = 28.1 bits (62), Expect = 0.91
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 52 DTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSC 84
+V++ G G G + A+ V A +IDP
Sbjct: 53 RSVIDAGTGNGILACGSYLLGAESVTAFDIDPDA 86
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET:
AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A*
3b7p_A* 3rie_A* 2pwp_A*
Length = 283
Score = 28.0 bits (63), Expect = 1.00
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 54 VLEIGPGTGNMTVKIL--EQAKKVIACEIDPS----CKSYFPSL 91
VL +G G G + ++ + + + CEID + K YF ++
Sbjct: 82 VLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNI 125
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 26.8 bits (60), Expect = 1.1
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 14/65 (21%)
Query: 18 WKICIQFNKDFGQHILKNPLIIQSIVDKGA-----IRPTDTVLEI-GPGTGNMTVKILEQ 71
W + +DF PL I + + P D + I G T MT +
Sbjct: 20 WGFRLVGGRDFSA-----PLTISRVHAGSKAALAALCPGDLIQAINGESTELMT---HLE 71
Query: 72 AKKVI 76
A+ I
Sbjct: 72 AQNRI 76
>2pt6_A Spermidine synthase; transferase, structural genomics consor
SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium
falciparum} PDB: 2pss_A* 2pt9_A*
Length = 321
Score = 28.1 bits (63), Expect = 1.2
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 54 VLEIGPGTGNMTVKIL--EQAKKVIACEIDPS----CKSYFPSL 91
VL +G G G + ++ + + + CEID + K YF ++
Sbjct: 120 VLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNI 163
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 28.1 bits (62), Expect = 1.2
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 40 QSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCK 85
++I+ VL++G G+G ++ + A+K+ A E +
Sbjct: 40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQ 86
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma
homolog, phosphorylation, signaling PR LIM domain, PDZ
domain; 1.5A {Homo sapiens}
Length = 88
Score = 26.9 bits (60), Expect = 1.3
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 15/69 (21%)
Query: 18 WKICIQFNKDFGQHILKNPLIIQSIVDKGA-----IRPTDTVLEI-GPGTGNMT----VK 67
W +Q KDF PL I S+ D G +R D VL I G MT
Sbjct: 15 WGFRLQGGKDFNM-----PLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQN 69
Query: 68 ILEQAKKVI 76
++ +
Sbjct: 70 KIKGCTGSL 78
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification,
iron-sulfur cluster, RNA processing; 1.95A {Escherichia
coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Length = 433
Score = 27.9 bits (63), Expect = 1.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 47 AIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
++P D VL++ G GN T+ + QA V+ E P+
Sbjct: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii,
structural genomics, BSGC structure funded by NIH;
1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 27.7 bits (62), Expect = 1.5
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
+ D +L++G G G + + + ++ K +I+
Sbjct: 50 VDKDDDILDLGCGYGVIGIALADEVKSTTMADINR 84
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET:
SAH; 1.30A {Homo sapiens}
Length = 215
Score = 27.7 bits (61), Expect = 1.5
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSC 84
+RP D +L +G G ++ ++ V + +
Sbjct: 40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVV 77
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 27.6 bits (61), Expect = 1.6
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
I + + + VL+IG G G T + ++ +D S
Sbjct: 74 IVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVS 118
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 27.8 bits (61), Expect = 1.6
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPS 83
I++ + + + D+VL++G G G +K + +I
Sbjct: 53 IKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEV 98
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 27.6 bits (62), Expect = 1.8
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPGTGNM 64
+ +DK ++P T+L+IG G G
Sbjct: 79 VDLNLDKLDLKPGMTLLDIGCGWGTT 104
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 27.5 bits (60), Expect = 1.9
Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 14/91 (15%)
Query: 49 RPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYY---------FRNLCL 99
+ +++G G G K+ + IDP ++ F N+
Sbjct: 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVF 82
Query: 100 QEVPT---DFDIKTLIDTVLNEINFADKRAR 127
F++K + D++ I F
Sbjct: 83 VIAAAESLPFELKNIADSI--SILFPWGTLL 111
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 26.2 bits (58), Expect = 2.0
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 14/65 (21%)
Query: 18 WKICIQFNKDFGQHILKNPLIIQSIV-----DKGAIRPTDTVLEI-GPGTGNMTVKILEQ 71
W + KDF Q PL I + + D + I G T NMT +
Sbjct: 15 WGFRLVGGKDFEQ-----PLAISRVTPGSKAALANLCIGDVITAIDGENTSNMT---HLE 66
Query: 72 AKKVI 76
A+ I
Sbjct: 67 AQNRI 71
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein;
1.70A {Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 26.1 bits (58), Expect = 2.0
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 15/69 (21%)
Query: 18 WKICIQFNKDFGQHILKNPLIIQSIVDKGA-----IRPTDTVLEI-GPGTGNMT----VK 67
W I +DF P+++ + ++G +RP D ++ I G M
Sbjct: 14 WGFRITGGRDFHT-----PIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQS 68
Query: 68 ILEQAKKVI 76
+ Q+ +
Sbjct: 69 KIRQSPSPL 77
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure
INI northeast structural genomics consortium, unknown
function; 2.10A {Rhodopseudomonas palustris} SCOP:
c.66.1.52
Length = 387
Score = 27.3 bits (61), Expect = 2.0
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 53 TVLEIGPGTGNMTVKILEQAKKVIAC 78
++EIGPG G M L + +
Sbjct: 83 RLIEIGPGRGTMMADALRALRVLPIL 108
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 27.2 bits (61), Expect = 2.1
Identities = 5/15 (33%), Positives = 11/15 (73%)
Query: 48 IRPTDTVLEIGPGTG 62
++P +L++G G+G
Sbjct: 82 LKPGARILDVGSGSG 96
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 27.2 bits (61), Expect = 2.3
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 43 VDKGAIRPTDTVLEIGPGT-GNMTVKILEQA-KKVIACEIDPSC 84
+ ++ TVL IG G G ++V + V+ P
Sbjct: 161 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRR 204
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 27.1 bits (60), Expect = 2.3
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 42 IVDKGAIRPTDTVLEIGPGTGNMTVKI 68
++ +R D VL++G G G V++
Sbjct: 53 MIALLDVRSGDRVLDVGCGIGKPAVRL 79
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase,
rossmann fold, polyamine biosynthesis, spermidine
biosynthesis, transferase; 2.90A {Escherichia coli} PDB:
3o4f_A
Length = 294
Score = 27.2 bits (61), Expect = 2.3
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 54 VLEIGPGTGNMTVKIL--EQAKKVIACEIDPS----CKSYFPSL 91
VL IG G G M ++ + + + EID C+ Y P+
Sbjct: 87 VLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNH 130
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis}
PDB: 3jwj_A
Length = 217
Score = 26.8 bits (59), Expect = 2.3
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 35 NPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDP 82
N + +V V+++G G GN+ +L+ +++ ++
Sbjct: 14 NQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSY 63
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 26.9 bits (60), Expect = 2.5
Identities = 11/37 (29%), Positives = 13/37 (35%), Gaps = 8/37 (21%)
Query: 49 RPTDTVLEIGPGTGNMTVKILEQAKK-----VIACEI 80
R LEIG G G V AK + E+
Sbjct: 33 REAPVTLEIGFGMGASLV---AMAKDRPEQDFLGIEV 66
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A
{Lactobacillus delbrueckii subsp}
Length = 205
Score = 26.8 bits (60), Expect = 2.7
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 11/43 (25%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILE------QAKKVIACEIDPSC 84
+ TV ++G G+G IL AK V+A +I
Sbjct: 58 MVKPLTVADVGTGSG-----ILAIAAHKLGAKSVLATDISDES 95
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 26.8 bits (59), Expect = 2.8
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 53 TVLEIGPGTGNMTVKILEQ-AKKVIACEIDPS 83
TVL++G G G + E AKKV+ ID S
Sbjct: 47 TVLDLGCGFGWHCIYAAEHGAKKVLG--IDLS 76
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis}
SCOP: c.66.1.53
Length = 213
Score = 26.8 bits (60), Expect = 2.9
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 8/41 (19%)
Query: 49 RPTDTVLEIGPGTGNMTVKILEQAKK-----VIACEIDPSC 84
+E+G G G AK+ I E+ S
Sbjct: 37 NDNPIHIEVGTGKGQFIS---GMAKQNPDINYIGIELFKSV 74
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB:
3epp_A*
Length = 313
Score = 26.8 bits (58), Expect = 3.0
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 38 IIQSIVDK--GAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKS 86
+I ++K + TVL++G G G +K + + C D + S
Sbjct: 20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVC-TDIADVS 69
>1wde_A Probable diphthine synthase; structural genomics, conserved
hypothetical protein, riken S genomics/proteomics
initiative, RSGI, transferase; 2.00A {Aeropyrum pernix}
SCOP: c.90.1.1
Length = 294
Score = 26.6 bits (58), Expect = 3.3
Identities = 5/24 (20%), Positives = 9/24 (37%), Gaps = 3/24 (12%)
Query: 57 IGPGTGNMTVK---ILEQAKKVIA 77
G G T++ + +A V
Sbjct: 15 WGYAPGMQTLEALDAVRRADVVYV 38
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha
sandwich, S-adenosylmeth dependent, structural
genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP:
c.66.1.53
Length = 214
Score = 26.4 bits (59), Expect = 3.7
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 8/37 (21%)
Query: 49 RPTDTVLEIGPGTGNMTVKILEQAKK-----VIACEI 80
+E+G G G AK+ I +I
Sbjct: 40 NDNPIHVEVGSGKGAFVS---GMAKQNPDINYIGIDI 73
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent
methyltransferase; NP_104914.1; HET: MSE; 1.60A
{Mesorhizobium loti}
Length = 243
Score = 26.3 bits (58), Expect = 3.7
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 53 TVLEIGPGTGNMTVKILEQ-AKKVIACEIDPS 83
++++G G G E A V+ +D S
Sbjct: 46 RIVDLGCGFGWFCRWAHEHGASYVLG--LDLS 75
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY,
structural genomics, structural genomics consortium,
SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A*
3c6m_A*
Length = 364
Score = 26.4 bits (58), Expect = 3.9
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 54 VLEIGPGTGNMTVKIL-EQAKKVIACEIDPS----CKSYFPSL 91
VL +G G G + +I+ + K V EID CK Y
Sbjct: 192 VLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKT 234
>1pjz_A Thiopurine S-methyltransferase; polymorphism,
S-adenosylmethionine, drug metabolism; NMR {Pseudomonas
syringae PV} SCOP: c.66.1.36
Length = 203
Score = 26.3 bits (57), Expect = 3.9
Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 35 NPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYF 88
N + Q + P VL G + Q V+ E+ + +
Sbjct: 8 NKDLQQYW-SSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERY 60
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 26.4 bits (59), Expect = 3.9
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 42 IVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK--KVIACEIDP 82
I K +R + LEIG G M + E+ KV A E+D
Sbjct: 47 IFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDE 89
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 26.4 bits (58), Expect = 4.1
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 45 KGAIRPTDTVLEIGPGTGNMTVKILEQAK-KVIACEIDP 82
+ + +IG GTG T+ + + K ++ ++ P
Sbjct: 41 INELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFP 79
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural
genomics, PSI, protein structure initiative; 1.50A
{Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Length = 296
Score = 26.5 bits (59), Expect = 4.1
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 54 VLEIGPGTGNMTVKIL--EQAKKVIACEIDPS----CKSYFPSL 91
VL IG G G ++L + +K I CE+D + Y
Sbjct: 94 VLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQT 137
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics,
transferase; HET: SAH; 2.20A {Pyrococcus horikoshii}
SCOP: c.66.1.32
Length = 207
Score = 26.2 bits (57), Expect = 4.3
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 53 TVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSC 84
V ++G GTG ++ L AK+VI E+D
Sbjct: 52 VVADLGAGTGVLSYGALLLGAKEVICVEVDKEA 84
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 1.80A
{Neisseria gonorrhoeae}
Length = 258
Score = 26.3 bits (57), Expect = 4.6
Identities = 9/43 (20%), Positives = 13/43 (30%)
Query: 40 QSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
+ I TV + G G + + V A E P
Sbjct: 73 ELIAKAVNHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHP 115
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.30A {Bacillus subtilis}
SCOP: c.66.1.17
Length = 275
Score = 26.0 bits (58), Expect = 4.7
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 4/23 (17%)
Query: 73 KKVIACEIDPS----CKSYFPSL 91
KK +ID K + PS+
Sbjct: 100 KKATLVDIDGKVIEYSKKFLPSI 122
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 25.9 bits (57), Expect = 4.9
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 23/108 (21%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS----------CKSYFPSLYYFR-N 96
+ P + +IG GTG T+ L +V +D S + ++ +
Sbjct: 31 VEPGKRIADIGCGTGTATLL-LADHYEVTG--VDLSEEMLEIAQEKAMETNRHVDFWVQD 87
Query: 97 LCLQEVPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKH 144
+ E+P D T++ LN + D + +
Sbjct: 88 MRELELPEPVDAITILCDSLNYL---------QTEADVKQTFDSAARL 126
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 26.0 bits (58), Expect = 5.2
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPGTGNM 64
I + K ++P T+L++G G G
Sbjct: 53 IDLALGKLGLQPGMTLLDVGCGWGAT 78
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 26.0 bits (58), Expect = 5.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPGTGNM 64
+ +DK + P T+L+IG G G+
Sbjct: 61 RKLALDKLNLEPGMTLLDIGCGWGST 86
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 25.8 bits (56), Expect = 5.6
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 49 RPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPS 83
T L+ G G G +T +L + E
Sbjct: 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKH 127
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: ADP;
2.30A {Francisella tularensis subsp} PDB: 4ehj_A
Length = 395
Score = 25.9 bits (58), Expect = 5.7
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 42 IVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVI------ACEIDP 82
I + + +L+IGP + + ++L+ A ++ E D
Sbjct: 279 IKKVSDVVADEMILDIGPESQKIIAELLKSANTILWNGPVGVFEFDN 325
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium
cellulosum} PDB: 3rgi_A
Length = 281
Score = 25.9 bits (58), Expect = 5.7
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 8/37 (21%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPG---TGNMTVKILEQA 72
I+ ++ +G + +E G G TG + +I A
Sbjct: 250 IRYLMGRGV----EEFVECGHGIVLTG-LYAQIRRDA 281
>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 95
Score = 24.8 bits (54), Expect = 6.0
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQAKKVIACEI 80
+P D V+ G +T ++ + K EI
Sbjct: 16 FKPFDLVIPFAVRKGEITGEVHMPSGKTATPEI 48
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 25.7 bits (57), Expect = 6.0
Identities = 6/49 (12%), Positives = 15/49 (30%), Gaps = 7/49 (14%)
Query: 37 LIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKI---LEQAKKVIACEIDP 82
+ + G+ + I P G + + I L + + +
Sbjct: 47 TLAATTNGNGSTG----AIAITPAAGLVGLYILNGLADNTTLTCIDPES 91
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia
chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A
1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A*
2jk0_A
Length = 327
Score = 25.7 bits (57), Expect = 6.3
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 8/48 (16%)
Query: 35 NPLIIQSIVDKGA--IRPTDTVLEIGPGTGNMTVKILEQAKKVIACEI 80
+ + + G I V G G G+++V+ + +K + +
Sbjct: 230 PEYLYDAAIQHGVKGI-----VYA-GMGAGSVSVRGIAGMRKALEKGV 271
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine,
methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A
{Escherichia coli}
Length = 369
Score = 25.7 bits (57), Expect = 6.3
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 52 DTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
+LE+ G GN ++ + +V+A EI
Sbjct: 215 GDLLELYCGNGNFSLALARNFDRVLATEIAKP 246
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A
{Escherichia coli}
Length = 387
Score = 25.9 bits (58), Expect = 6.6
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 42 IVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVI 76
+ ++ + +L+IG + +IL+ AK ++
Sbjct: 271 LKSVNDVKADEQILDIGDASAQELAEILKNAKTIL 305
>2k7p_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; NMR {Homo sapiens}
Length = 188
Score = 25.6 bits (55), Expect = 7.1
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 43 VDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEI 80
+D ++RP D V+ G +T ++ + KV I
Sbjct: 15 LDVTSLRPFDLVIPFTIKKGEITGEVRMPSGKVAQPTI 52
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 25.3 bits (56), Expect = 7.7
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 10/42 (23%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQA-----KKVIACEIDPSC 84
+RP D VL++G G+G +L A K + +IDP
Sbjct: 118 LRPGDKVLDLGTGSG-----VLAIAAEKLGGKALGVDIDPMV 154
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics,
PSI, protein structure initiative; 1.80A {Pyrococcus
furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Length = 281
Score = 25.3 bits (56), Expect = 7.9
Identities = 6/23 (26%), Positives = 7/23 (30%), Gaps = 4/23 (17%)
Query: 73 KKVIACEIDPS----CKSYFPSL 91
+VI EID K
Sbjct: 99 DEVIMVEIDEDVIMVSKDLIKID 121
>1zuj_A Hypothetical protein llacc01001955; oxidative stress, DPS, DNA
binding, lactic acid bacteria, DN protein; 2.90A
{Lactococcus lactis} SCOP: a.25.1.1
Length = 179
Score = 25.2 bits (55), Expect = 8.0
Identities = 6/46 (13%), Positives = 10/46 (21%), Gaps = 2/46 (4%)
Query: 99 LQEVPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKH 144
++ DF + I A K + L
Sbjct: 114 IENFINDFQ--NQNLFIGRAIKLAQKEEKFSLELAIRKLYGYNLSI 157
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis,
malonyl-COA, acyl carrier protein TRAN (MCAT), FABD,
acyltransferase; 2.10A {Streptococcus pneumoniae}
Length = 307
Score = 25.5 bits (57), Expect = 8.6
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 4/22 (18%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPG 60
I + + G +EIGPG
Sbjct: 258 IGVMQEAGI----SNFIEIGPG 275
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH;
2.70A {Vaccinia virus}
Length = 302
Score = 25.5 bits (55), Expect = 9.1
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 37 LIIQSIVDKGAIRPT--DTVLEIGPGTGNMTVKILE-QAKKVIACEIDPSC 84
L+I K + + VL I G G K + ++A + D
Sbjct: 33 LLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADA 83
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 25.5 bits (57), Expect = 9.7
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 42 IV---DKGAIRPTDTVLEIGPGTG 62
IV D+ IR D +++IGPG G
Sbjct: 520 IVVEHDEEVIRNADHIIDIGPGGG 543
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.142 0.436
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,360,289
Number of extensions: 133172
Number of successful extensions: 686
Number of sequences better than 10.0: 1
Number of HSP's gapped: 667
Number of HSP's successfully gapped: 186
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.7 bits)