RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1134
(149 letters)
>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 278
Score = 82.7 bits (203), Expect = 2e-20
Identities = 44/79 (55%), Positives = 55/79 (69%)
Query: 30 QHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFP 89
QHILKNPLII SI+DK A+RPTD VLE+GPGTGNMTVK+LE+AKKV+ACE+DP +
Sbjct: 1 QHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELH 60
Query: 90 SLYYFRNLCLQEVPTDFDI 108
+ + D+
Sbjct: 61 KRVQGTPVASKLQVLVGDV 79
Score = 58.0 bits (139), Expect = 2e-11
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 95 RNLCLQEVPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHFA 149
++ +P DF I I +L F+DKRAR+MD+DDF+ LL FN GIHF+
Sbjct: 224 CSVHNIIIPEDFSIADKIQQILTSTGFSDKRARSMDIDDFIRLLHGFNAEGIHFS 278
>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 322
Score = 70.9 bits (173), Expect = 5e-16
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 8/84 (9%)
Query: 22 IQFNKDFGQHILKNPLIIQSIVDKGAIRPT------DTVLEIGPGTGNMTVKILE--QAK 73
+ +G L NP + I DK + T VL++ PG G + +
Sbjct: 9 SKLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPR 68
Query: 74 KVIACEIDPSCKSYFPSLYYFRNL 97
+ E S + + + L
Sbjct: 69 QYSLLEKRSSLYKFLNAKFEGSPL 92
Score = 24.6 bits (53), Expect = 6.6
Identities = 5/37 (13%), Positives = 15/37 (40%)
Query: 107 DIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNK 143
+ ++ + + + K + D+F+ L F +
Sbjct: 281 GGQQYFNSRITDKDLLKKCPIDLTNDEFIYLTKLFME 317
>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein
KsgA {Escherichia coli [TaxId: 562]}
Length = 252
Score = 69.9 bits (170), Expect = 7e-16
Identities = 15/69 (21%), Positives = 30/69 (43%)
Query: 30 QHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFP 89
Q+ L + +I SIV + ++EIGPG +T + E+ ++ E+D +
Sbjct: 1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60
Query: 90 SLYYFRNLC 98
+ +
Sbjct: 61 THPFLGPKL 69
>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus
pneumoniae, Ermam [TaxId: 1313]}
Length = 245
Score = 67.6 bits (164), Expect = 4e-15
Identities = 19/74 (25%), Positives = 37/74 (50%)
Query: 25 NKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSC 84
N + Q+ L + ++ I+ + ++ TDTV EIG G G++T K+ + +K+V + E+D
Sbjct: 4 NIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHL 63
Query: 85 KSYFPSLYYFRNLC 98
+
Sbjct: 64 FNLSSEKLKLNTRV 77
>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus
subtilis, Ermc' [TaxId: 1423]}
Length = 235
Score = 63.0 bits (152), Expect = 2e-13
Identities = 15/69 (21%), Positives = 30/69 (43%)
Query: 30 QHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFP 89
Q+ + + I I+ + D + EIG G G+ T++++++ V A EID
Sbjct: 1 QNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTE 60
Query: 90 SLYYFRNLC 98
+ +
Sbjct: 61 NKLVDHDNF 69
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus
subtilis [TaxId: 1423]}
Length = 234
Score = 45.3 bits (106), Expect = 4e-07
Identities = 9/57 (15%), Positives = 19/57 (33%)
Query: 42 IVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNLC 98
++ R VL+IG G G+ + ++ I + S + +
Sbjct: 8 MIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVE 64
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 44.2 bits (103), Expect = 1e-06
Identities = 9/57 (15%), Positives = 22/57 (38%)
Query: 42 IVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNLC 98
++ A++ + VL++ G G++ KKV+A ++ +
Sbjct: 7 LMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQ 63
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 40.8 bits (95), Expect = 2e-05
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 17/84 (20%)
Query: 4 PNVDKLNYYVCRTVWKICIQFNKDFGQHILK--NPLIIQSIVDKGAIRPTDTVLEIGPGT 61
P +KL +Y K F ++ P + + + ++ DT +++G G
Sbjct: 181 PQANKLKHY-------------KAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMDLGSGV 227
Query: 62 GNMTVKILEQ--AKKVIACEIDPS 83
GN V+ + CEI
Sbjct: 228 GNCVVQAALECGCALSFGCEIMDD 251
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 40.2 bits (93), Expect = 3e-05
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 38 IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ--AKKVIACEIDPSCKSYFP 89
++ ++D+ + D +++G G G + +++ K E Y
Sbjct: 139 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAE 192
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 39.4 bits (91), Expect = 5e-05
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 29 GQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK---KVIACEIDP 82
G I P I I+ I P DTVLE G G+G M++ + + +VI+ E+
Sbjct: 78 GTAITF-PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRK 133
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 186
Score = 38.6 bits (89), Expect = 8e-05
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 42 IVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
I+ D +++G GTG +T+++ + ++V A + +P
Sbjct: 25 IMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNP 65
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 230
Score = 38.6 bits (89), Expect = 8e-05
Identities = 16/112 (14%), Positives = 31/112 (27%), Gaps = 2/112 (1%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQA--KKVIACEIDPSCKSYFPSLYYFRN 96
I + I+ +L +G G + + A V A E P R
Sbjct: 63 IIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE 122
Query: 97 LCLQEVPTDFDIKTLIDTVLNEINFADKRARTMDLDDFVLLLATFNKHGIHF 148
+ + + + V + A+ + + F K G +
Sbjct: 123 NIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYG 174
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia
coli [TaxId: 562]}
Length = 245
Score = 38.0 bits (87), Expect = 2e-04
Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Query: 24 FNKDFGQHILKNPL---IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACE 79
F +H + NP ++ ++P +L++G G+G M +
Sbjct: 4 FTISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGID 63
Query: 80 IDPSCKSYFPSLYYFRNLC 98
+ + +
Sbjct: 64 MSSLFTAQAKRRAEELGVS 82
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 37.7 bits (87), Expect = 2e-04
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 29 GQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK---KVIACEIDP 82
I+ + + I+ + +RP +LE+G G+GNM+ IL + E D
Sbjct: 65 NTQII-SEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDE 120
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 316
Score = 34.8 bits (79), Expect = 0.002
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Query: 40 QSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCKSYFPSLYYFRNLC 98
S+ + VL++G GTG + + + A+KVI E + L
Sbjct: 23 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVK-IVKANKLD 81
Query: 99 LQEVPTDFDIKTL 111
++ +
Sbjct: 82 HVVTIIKGKVEEV 94
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 264
Score = 33.4 bits (76), Expect = 0.005
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 36 PLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK---KVIACEIDP 82
P IV +G I P VLE G G+G +T+ +L +VI+ E
Sbjct: 82 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRA 131
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 246
Score = 33.1 bits (74), Expect = 0.008
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNLC 98
I + + D L++ GTGN+T + + K A ++ S + + + L
Sbjct: 27 IIEKCVENNLVF-DDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLK 85
Query: 99 LQEVPTDF 106
+ D
Sbjct: 86 PRLACQDI 93
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 328
Score = 32.9 bits (74), Expect = 0.011
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 34 KNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCK 85
+ +I+ + VL++G GTG +++ + AK VI ++ +
Sbjct: 22 RTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIE 74
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 32.6 bits (73), Expect = 0.011
Identities = 9/72 (12%), Positives = 23/72 (31%)
Query: 42 IVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNLCLQE 101
++ VL++ GTG ++ ++E+ V + + Y + R
Sbjct: 48 LLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAF 107
Query: 102 VPTDFDIKTLID 113
+ +
Sbjct: 108 DKWVIEEANWLT 119
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase
3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 32.2 bits (72), Expect = 0.018
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 40 QSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSCK 85
I I VL++G GTG +++ + AKKV+ +
Sbjct: 25 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY 71
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738
{Erwinia carotovora [TaxId: 554]}
Length = 225
Score = 31.8 bits (71), Expect = 0.021
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 53 TVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNLC 98
+LE+G G+ T ++ E + E S+
Sbjct: 23 NLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITY 68
>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 224
Score = 31.3 bits (70), Expect = 0.027
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 29 GQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDP 82
G + + ++D+ + VLEIG G G T I E KV++ EI+
Sbjct: 50 GINTTALN-LGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINE 102
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 209
Score = 30.8 bits (69), Expect = 0.041
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 48 IRPTDTVLEIGPGTGNMTVKI--LEQAKKVIACEIDP 82
+R + VL +G +G + + + A E
Sbjct: 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSA 90
>d1yzha1 c.66.1.53 (A:8-211) tRNA
(guanine-N(7)-)-methyltransferase TrmB {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 204
Score = 30.6 bits (68), Expect = 0.049
Identities = 12/73 (16%), Positives = 25/73 (34%)
Query: 26 KDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCK 85
+ Q+++ NPL ++ +E+G G G + +Q + ID
Sbjct: 7 EANPQYVVLNPLEAKAKWRDLFGNDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKS 66
Query: 86 SYFPSLYYFRNLC 98
+L +
Sbjct: 67 VLSYALDKVLEVG 79
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 251
Score = 30.5 bits (67), Expect = 0.053
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNLC 98
++ I + A R VL++ GTG T+++ E+ +V+ ++ RNL
Sbjct: 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLK 89
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase
{Pseudomonas syringae [TaxId: 317]}
Length = 201
Score = 30.5 bits (67), Expect = 0.064
Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 35 NPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYF 88
N + Q + P VL G + Q V+ E+ + +
Sbjct: 6 NKDLQQ-YWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERY 58
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain
{Thermus aquaticus [TaxId: 271]}
Length = 223
Score = 30.4 bits (67), Expect = 0.068
Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 3/96 (3%)
Query: 38 IIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILE---QAKKVIACEIDPSCKSYFPSLYYF 94
++ +V VLE G E A + + EIDP P
Sbjct: 7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGI 66
Query: 95 RNLCLQEVPTDFDIKTLIDTVLNEINFADKRARTMD 130
L P + L + + A K +
Sbjct: 67 LADFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVF 102
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase
{Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Length = 252
Score = 29.9 bits (66), Expect = 0.084
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDP 82
I++ + + + D+VL++G G G +K + +I
Sbjct: 13 IKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAE 57
>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 224
Score = 29.1 bits (64), Expect = 0.18
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 48 IRPTDTVLEIGPGTGNMTV---KILEQAKKVIACEIDPS 83
+ L++G G+G +T +++ KVI +
Sbjct: 74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKE 112
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 280
Score = 28.0 bits (61), Expect = 0.39
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 23 QFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKK 74
Q ++F L II I G + +L IG G G + ++IL + +
Sbjct: 18 QCMQEFMDKKLPG--IIGRI---GDTKSEIKILSIGGGAGEIDLQILSKVQA 64
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 227
Score = 27.8 bits (61), Expect = 0.45
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPGTGNMTV---KILEQAKKVIACEIDP 82
I + + I+P +VL +G +G I+ K+ E P
Sbjct: 62 IMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSP 108
>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 453
Score = 27.6 bits (61), Expect = 0.71
Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 8/74 (10%)
Query: 72 AKKVIACEIDPSCKSYFPSLYYFRNLCLQEVPTDF-------DIKTLIDTVLNEINFADK 124
EI + ++ +CL P F D + + F +
Sbjct: 196 HSGATKGEISATQDVMMEEIFRVVCICLGNPPETFTWEYRDKDKNYEKIGPITPLEFYRE 255
Query: 125 RART-MDLDDFVLL 137
+ +++D + L
Sbjct: 256 HVKPLFNMEDKICL 269
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
coli [TaxId: 562]}
Length = 268
Score = 26.8 bits (58), Expect = 0.98
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 50 PTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRN 96
VL+IG G G T + ++ +D S + + +
Sbjct: 84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQ 130
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 26.8 bits (58), Expect = 0.99
Identities = 11/94 (11%), Positives = 28/94 (29%), Gaps = 12/94 (12%)
Query: 24 FNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK---KVIACEI 80
+N D+ ++ I +++ G G G + + ++ K +
Sbjct: 10 YNDDYVSFLVNTVW---------KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDS 60
Query: 81 DPSCKSYFPSLYYFRNLCLQEVPTDFDIKTLIDT 114
+ + L+ + + D L D
Sbjct: 61 GETLLAEARELFRLLPYDSEFLEGDATEIELNDK 94
>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens)
[TaxId: 9606]}
Length = 80
Score = 25.5 bits (56), Expect = 1.2
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQAKKVIACEI 80
+RP + V+ G +T ++ + K I
Sbjct: 1 LRPFNLVIPFAVQKGELTGEVRMPSGKTARPNI 33
>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana
perezi) [TaxId: 8403]}
Length = 174
Score = 26.4 bits (57), Expect = 1.3
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 41 SIVDKGAIRPTDTVLEIGPG-TGNMTVKILEQAKKVIACEIDPS 83
+ V+ + P T G G G + + A +
Sbjct: 18 AAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH 61
>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus
musculus), class II [TaxId: 10090]}
Length = 174
Score = 26.4 bits (57), Expect = 1.3
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 39 IQSIVDKGAIRPTDTVLEIGPG-TGNMTVKILEQAKKVIACEIDPSCK 85
+ ++ + P T G G G + + A ID + +
Sbjct: 17 YGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE 64
>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase
domain {Thermus thermophilus [TaxId: 274]}
Length = 182
Score = 26.3 bits (57), Expect = 1.5
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 31 HILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPS 90
H+ P++ Q +D A+RP ++ G ILE+ +VI + DP +
Sbjct: 2 HV---PVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARA-K 57
Query: 91 LYYFRNLCLQEVPTDFDIKTLIDTVLNEIN 120
+ L + + + L + ++
Sbjct: 58 GLHLPGLTVVQGNFRHLKRHLAALGVERVD 87
>d1wdea_ c.90.1.1 (A:) Diphthine synthase, DphB {Aeropyrum pernix
[TaxId: 56636]}
Length = 289
Score = 26.2 bits (57), Expect = 1.5
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 4/26 (15%)
Query: 57 IGPGTGNMTVK---ILEQAKKVIACE 79
G G T++ + +A V+ E
Sbjct: 10 WGYAPGMQTLEALDAVRRA-DVVYVE 34
>d2fcaa1 c.66.1.53 (A:10-213) tRNA
(guanine-N(7)-)-methyltransferase TrmB {Bacillus
subtilis [TaxId: 1423]}
Length = 204
Score = 26.0 bits (56), Expect = 1.7
Identities = 8/54 (14%), Positives = 17/54 (31%)
Query: 30 QHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
+ NP + + +E+G G G + +Q + I+
Sbjct: 9 DIAISNPADYKGKWNTVFGNDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELF 62
>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 215
Score = 26.0 bits (56), Expect = 1.9
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 30 QHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILE-QAKKVIACEIDPSC 84
+ P ++ +++ ++P +LE+G G+G I E V E P
Sbjct: 58 GQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPEL 113
>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains
2 and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 128
Score = 25.5 bits (56), Expect = 2.0
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 34 KNPLIIQSIVDKGAIRPTDTVLEIGPGTGNMTVKILE 70
P I V G IR ++ G TV+ ++
Sbjct: 18 SKPAIGGVEVLTGVIRQGYPLM-NDDGETVGTVESMQ 53
>d2p41a1 c.66.1.25 (A:8-264) An RNA cap
(nucleoside-2'-O-)-methyltransferase domain of RNA
polymerase NS5 {Dengue virus 2 [TaxId: 11060]}
Length = 257
Score = 26.0 bits (57), Expect = 2.0
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 42 IVDKGAIRPTDTVLEIGPGTGNMTVKILEQAK 73
V++ + P V+++G G G +
Sbjct: 58 FVERNLVTPEGKVVDLGCGRGGWSYYCGGLKN 89
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase
TM1293 {Thermotoga maritima [TaxId: 2336]}
Length = 208
Score = 25.5 bits (54), Expect = 2.6
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 5/83 (6%)
Query: 17 VWKICIQFNKDFGQHILKNPLIIQSIVDK-GAIRPTDTVLEIGPGTGNMTVKILEQAKKV 75
+W I +F ++ + L + S + + P +EIG GTG V + K
Sbjct: 2 MWHIFERFVNEYERWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPL----KIK 57
Query: 76 IACEIDPSCKSYFPSLYYFRNLC 98
I E F
Sbjct: 58 IGVEPSERMAEIARKRGVFVLKG 80
>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol
dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 171
Score = 25.2 bits (54), Expect = 2.9
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 43 VDKGAIRPTDTVLEIGPGTGNMTVKIL 69
+G + VL G G M ++
Sbjct: 19 CRRGGVTLGHKVLVCGAGPIGMVTLLV 45
>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA
methyltransferase {Proteus vulgaris [TaxId: 585]}
Length = 320
Score = 25.5 bits (54), Expect = 3.6
Identities = 12/82 (14%), Positives = 26/82 (31%)
Query: 1 MQLPNVDKLNYYVCRTVWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPG 60
+P + H + P + + P D V++I G
Sbjct: 201 GSIPPNLLQISNSESNGQYLANCKLMGIKAHPARFPAKLPEFFIRMLTEPDDLVVDIFGG 260
Query: 61 TGNMTVKILEQAKKVIACEIDP 82
+ + +++K I+ E+ P
Sbjct: 261 SNTTGLVAERESRKWISFEMKP 282
>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 260
Score = 25.1 bits (54), Expect = 3.8
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 48 IRPTDTVLEIGPGTGNMTVKILEQ-AKKVIACEIDPSC 84
+P + V+++ G G++++ I KVIA E DP
Sbjct: 105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYT 142
>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA
methyltransferase {Rhodobacter sphaeroides [TaxId:
1063]}
Length = 279
Score = 25.1 bits (53), Expect = 4.1
Identities = 12/78 (15%), Positives = 27/78 (34%)
Query: 5 NVDKLNYYVCRTVWKICIQFNKDFGQHILKNPLIIQSIVDKGAIRPTDTVLEIGPGTGNM 64
+V+K + + H + P + + + P TVL+ G+G
Sbjct: 162 SVEKGRNPTNVWRMSRLNGNSLERVGHPTQKPAAVIERLVRALSHPGSTVLDFFAGSGVT 221
Query: 65 TVKILEQAKKVIACEIDP 82
+++ + I + P
Sbjct: 222 ARVAIQEGRNSICTDAAP 239
>d2bb3a1 c.90.1.1 (A:1-195) Precorrin-6y methylase CbiE
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 195
Score = 24.8 bits (53), Expect = 5.2
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 57 IGPGTGNMTVK---ILEQAKKVIA 77
G G T + I+E+A+ +
Sbjct: 7 SGTCRGQTTERAKEIIERAEVIYG 30
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB
{Salmonella typhimurium [TaxId: 90371]}
Length = 198
Score = 24.5 bits (52), Expect = 5.4
Identities = 8/46 (17%), Positives = 18/46 (39%)
Query: 53 TVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNLC 98
L++G G G ++ + V A + +P+ + + L
Sbjct: 33 RTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLD 78
>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas
putida [TaxId: 303]}
Length = 195
Score = 24.0 bits (51), Expect = 7.4
Identities = 9/77 (11%), Positives = 19/77 (24%), Gaps = 8/77 (10%)
Query: 43 VDKGAIRPTDTVLEIGPGTGNMTVKILEQAKKVIACEIDPSCKSYFPSLYYFRNLCLQEV 102
+ P TV G G + + + + L R +
Sbjct: 18 AVTAGVGPGSTVYVAGAGPVGLAA--------AASARLLGAAVVIVGDLNPARLAHAKAQ 69
Query: 103 PTDFDIKTLIDTVLNEI 119
+ +L + +I
Sbjct: 70 GFEIADLSLDTPLHEQI 86
>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa
(LmjF30.0810) {Leishmania major [TaxId: 5664]}
Length = 254
Score = 24.2 bits (51), Expect = 8.3
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 54 VLEIGPGTGNMTVKILEQAKKVIACEIDPS 83
L+ G G G +T +L + ++P
Sbjct: 97 ALDCGAGIGRITKNLLTKLYATT-DLLEPV 125
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 24.1 bits (51), Expect = 9.1
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Query: 30 QHILKNPLIIQSIVDKGAIRPTDTVLEIGP-GTG-NMTVKILEQAKKVIACEIDPSC 84
+L + ++ P +VL GP +G + + +I
Sbjct: 19 TRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD 75
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.142 0.436
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 590,580
Number of extensions: 26536
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 59
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.3 bits)