BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11343
(1150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WI1|A Chain A, Solution Structure Of The Ph Domain Of Human Calcium-
Dependent Activator Protein For Secretion (Caps)
Length = 126
Score = 110 bits (276), Expect = 3e-24, Method: Composition-based stats.
Identities = 44/61 (72%), Positives = 55/61 (90%)
Query: 152 MKHCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVDYIE 211
MKH GYL+A GK+ W++WKKR+FVLVQVSQYTFAMCS++EKK++P E +QLDGYTVDY +
Sbjct: 8 MKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTD 67
Query: 212 P 212
P
Sbjct: 68 P 68
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/78 (50%), Positives = 47/78 (60%), Gaps = 10/78 (12%)
Query: 445 KKFEHQ--LLFNALQLDSADEQTAAIRRELDNLEGGRYFFNAFKESESILYACDDENEYH 502
KK E Q L + +D D Q LEGGR FFNA KE +++++A DDE +
Sbjct: 48 KKAEPQELLQLDGYTVDYTDPQPG--------LEGGRAFFNAVKEGDTVIFASDDEQDRI 99
Query: 503 LWVMAMYRATGQSHKPTP 520
LWV AMYRATGQSHKP P
Sbjct: 100 LWVQAMYRATGQSHKPVP 117
>pdb|2KZW|A Chain A, Solution Nmr Structure Of Q8psa4 From Methanosarcina
Mazei, Northeast Structural Genomics Consortium Target
Mar143a
Length = 145
Score = 33.9 bits (76), Expect = 0.52, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 805 DQVLAEQP-SDTWDSFPLFQILNEYLRADENLKNGRFHQHLREYFAPLVVRYVDLMESSI 863
D A P + + D PL EYL + L RF + E FAPL VR+ D E++
Sbjct: 34 DSAYAVNPEAGSMDYMPLM----EYLHSSPVLPTARFTSDITEGFAPLSVRFKDFSENAT 89
Query: 864 AQ 865
++
Sbjct: 90 SR 91
>pdb|2O70|A Chain A, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O70|B Chain B, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O70|C Chain C, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O70|D Chain D, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O70|E Chain E, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O70|F Chain F, Structure Of Ohcu Decarboxylase From Zebrafish
pdb|2O73|A Chain A, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O73|B Chain B, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O73|C Chain C, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O73|D Chain D, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O73|E Chain E, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O73|F Chain F, Structure Of Ohcu Decarboxylase In Complex With Allantoin
pdb|2O74|A Chain A, Structure Of Ohcu Decarboxylase In Complex With Guanine
pdb|2O74|B Chain B, Structure Of Ohcu Decarboxylase In Complex With Guanine
pdb|2O74|C Chain C, Structure Of Ohcu Decarboxylase In Complex With Guanine
pdb|2O74|D Chain D, Structure Of Ohcu Decarboxylase In Complex With Guanine
pdb|2O74|E Chain E, Structure Of Ohcu Decarboxylase In Complex With Guanine
pdb|2O74|F Chain F, Structure Of Ohcu Decarboxylase In Complex With Guanine
Length = 174
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 675 QITNFRYAFPFGRPEGILKSTLSLLERVLMKDSVTPVQPEEVREVIKKCLETAALINYSK 734
+I+ F ++ P EGIL+ L R L ++TP EE + L++A +++ +
Sbjct: 47 RISEFIHSLPDSGKEGILRCHPDLAGRDLQSGTLTPESQEEQSQAGMTTLDSAEIVHMYR 106
Query: 735 LSSE 738
L+SE
Sbjct: 107 LNSE 110
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 350 SDRVLNFVQSGACSLYDFREVFRKNIQKRVRSLPEIDGLSKETVLSSWMAKFDCILKVGE 409
S +++ +QS C+++ FR + ++I KR+R + E +GL L+ IL + E
Sbjct: 150 SSKIIEPIQS-RCAIFRFRPLRDEDIAKRLRYIAENEGLE----LTE--EGLQAILYIAE 202
Query: 410 EDLKRPNRALQQALNCELILSKEQLY 435
D++R LQ A + ++ E ++
Sbjct: 203 GDMRRAINILQAAAALDKKITDENVF 228
>pdb|2DC1|A Chain A, Crystal Structure Of L-Aspartate Dehydrogenase From
Hyperthermophilic Archaeon Archaeoglobus Fulgidus
pdb|2DC1|B Chain B, Crystal Structure Of L-Aspartate Dehydrogenase From
Hyperthermophilic Archaeon Archaeoglobus Fulgidus
Length = 236
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 313 HTSIVFLLQAFLRGDTQIMTDEAFQNAVQSYTDVFLKSDRVLNFVQSGACSLYDF----R 368
H +V + FL+ + + + A Q AV+ Y + LK+ L + +GA + DF R
Sbjct: 36 HEKMVRGIDEFLQREMDVAVEAASQQAVKDYAEKILKAGIDLIVLSTGAFADRDFLSRVR 95
Query: 369 EVFRKNIQKRVRSLPEIDGL 388
EV RK ++ + I GL
Sbjct: 96 EVCRKTGRRVYIASGAIGGL 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,355,396
Number of Sequences: 62578
Number of extensions: 1305471
Number of successful extensions: 3025
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3019
Number of HSP's gapped (non-prelim): 12
length of query: 1150
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1041
effective length of database: 8,152,335
effective search space: 8486580735
effective search space used: 8486580735
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)