Query psy11343
Match_columns 1150
No_of_seqs 105 out of 133
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 15:58:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3543|consensus 100.0 5E-320 0E+00 2625.9 62.0 877 1-1150 316-1201(1218)
2 KOG1011|consensus 100.0 6E-149 1E-153 1251.0 37.9 574 452-1073 318-974 (1283)
3 KOG3543|consensus 100.0 7.7E-99 2E-103 845.1 10.4 374 248-642 44-504 (1218)
4 cd01234 PH_CADPS CADPS (Ca2+-d 100.0 3.5E-55 7.7E-60 411.1 6.4 64 151-214 1-64 (117)
5 PF06292 DUF1041: Domain of Un 99.9 3.8E-28 8.3E-33 230.2 8.8 94 718-811 2-106 (106)
6 KOG1328|consensus 99.5 1.4E-09 3E-14 128.3 44.5 623 470-1141 186-907 (1103)
7 PF05664 DUF810: Protein of un 99.4 7.1E-11 1.5E-15 141.2 28.6 398 552-975 210-675 (677)
8 PF00168 C2: C2 domain; Inter 97.0 0.0021 4.4E-08 55.0 6.5 78 30-110 1-84 (85)
9 cd08400 C2_Ras_p21A1 C2 domain 96.9 0.0078 1.7E-07 58.2 10.6 99 29-131 5-106 (126)
10 smart00239 C2 Protein kinase C 96.8 0.0045 9.6E-08 53.5 7.3 82 29-113 1-88 (101)
11 cd08383 C2A_RasGAP C2 domain ( 96.8 0.009 1.9E-07 55.6 9.5 99 29-131 1-102 (117)
12 cd04050 C2B_Synaptotagmin-like 96.7 0.0059 1.3E-07 56.8 7.7 92 30-128 2-101 (105)
13 cd04046 C2_Calpain C2 domain p 96.7 0.012 2.6E-07 56.7 10.0 111 29-144 4-121 (126)
14 cd04051 C2_SRC2_like C2 domain 96.7 0.0071 1.5E-07 57.4 8.0 107 29-138 1-123 (125)
15 cd04013 C2_SynGAP_like C2 doma 96.7 0.015 3.2E-07 59.2 10.7 108 24-134 7-118 (146)
16 PF00169 PH: PH domain; Inter 96.6 0.00081 1.8E-08 58.9 1.3 61 152-214 1-61 (104)
17 cd08681 C2_fungal_Inn1p-like C 96.5 0.015 3.3E-07 54.6 9.0 108 29-142 2-116 (118)
18 cd04017 C2D_Ferlin C2 domain f 96.5 0.017 3.6E-07 56.3 9.4 100 28-131 1-119 (135)
19 cd08394 C2A_Munc13 C2 domain f 96.4 0.012 2.6E-07 59.0 8.0 94 29-128 3-100 (127)
20 cd04036 C2_cPLA2 C2 domain pre 96.4 0.017 3.8E-07 54.6 8.7 108 30-144 2-117 (119)
21 cd08379 C2D_MCTP_PRT_plant C2 96.3 0.016 3.4E-07 57.3 8.3 100 30-130 2-112 (126)
22 cd08682 C2_Rab11-FIP_classI C2 96.3 0.016 3.5E-07 55.4 8.0 97 30-130 1-110 (126)
23 cd04022 C2A_MCTP_PRT_plant C2 96.3 0.023 5.1E-07 54.4 8.9 113 29-144 1-125 (127)
24 cd00276 C2B_Synaptotagmin C2 d 96.2 0.018 3.9E-07 54.7 7.7 100 29-131 15-124 (134)
25 cd04025 C2B_RasA1_RasA4 C2 dom 96.1 0.028 6.1E-07 53.4 8.4 96 30-129 2-103 (123)
26 cd04019 C2C_MCTP_PRT_plant C2 96.0 0.053 1.1E-06 54.7 10.6 98 30-131 2-110 (150)
27 cd04042 C2A_MCTP_PRT C2 domain 96.0 0.03 6.4E-07 53.2 8.3 112 29-143 1-118 (121)
28 cd04011 C2B_Ferlin C2 domain s 96.0 0.026 5.7E-07 52.9 7.7 98 27-130 3-111 (111)
29 cd08378 C2B_MCTP_PRT_plant C2 95.9 0.055 1.2E-06 52.2 9.8 96 30-132 2-106 (121)
30 cd04027 C2B_Munc13 C2 domain s 95.9 0.047 1E-06 52.7 9.3 101 29-131 2-113 (127)
31 cd08377 C2C_MCTP_PRT C2 domain 95.9 0.071 1.5E-06 49.9 10.0 98 29-130 2-102 (119)
32 cd04054 C2A_Rasal1_RasA4 C2 do 95.7 0.079 1.7E-06 50.8 9.9 97 29-128 1-103 (121)
33 cd04014 C2_PKC_epsilon C2 doma 95.6 0.063 1.4E-06 51.9 8.8 109 27-144 3-128 (132)
34 cd04049 C2_putative_Elicitor-r 95.5 0.05 1.1E-06 51.8 7.6 97 29-129 2-108 (124)
35 cd04033 C2_NEDD4_NEDD4L C2 dom 95.5 0.1 2.2E-06 50.0 9.8 99 29-130 1-116 (133)
36 cd04016 C2_Tollip C2 domain pr 95.5 0.14 2.9E-06 50.4 10.7 99 29-132 3-107 (121)
37 cd00275 C2_PLC_like C2 domain 95.4 0.14 3.1E-06 48.3 10.1 100 28-132 2-113 (128)
38 cd04015 C2_plant_PLD C2 domain 95.3 0.18 3.9E-06 51.2 11.2 118 24-145 3-156 (158)
39 cd08385 C2A_Synaptotagmin-1-5- 95.2 0.12 2.5E-06 49.2 9.1 103 23-128 6-123 (124)
40 cd08678 C2_C21orf25-like C2 do 95.2 0.088 1.9E-06 50.6 8.4 98 30-130 1-102 (126)
41 cd08688 C2_KIAA0528-like C2 do 95.1 0.05 1.1E-06 51.2 6.1 95 30-128 1-108 (110)
42 cd08686 C2_ABR C2 domain in th 95.1 0.069 1.5E-06 53.0 7.2 106 30-145 1-117 (118)
43 cd08384 C2B_Rabphilin_Doc2 C2 95.0 0.1 2.2E-06 50.3 8.1 102 29-133 14-125 (133)
44 cd08401 C2A_RasA2_RasA3 C2 dom 95.0 0.16 3.4E-06 49.1 9.3 99 29-130 1-105 (121)
45 cd04044 C2A_Tricalbin-like C2 94.9 0.11 2.3E-06 48.8 7.9 84 29-115 3-91 (124)
46 cd08391 C2A_C2C_Synaptotagmin_ 94.6 0.18 3.9E-06 47.2 8.5 104 30-141 3-118 (121)
47 cd08376 C2B_MCTP_PRT C2 domain 94.6 0.23 5E-06 46.6 9.2 95 30-128 2-102 (116)
48 cd04024 C2A_Synaptotagmin-like 94.5 0.26 5.7E-06 46.6 9.3 97 30-130 3-110 (128)
49 cd01265 PH_PARIS-1 PARIS-1 ple 94.2 0.042 9E-07 51.5 3.3 52 155-209 2-55 (95)
50 cd08382 C2_Smurf-like C2 domai 94.2 0.39 8.4E-06 46.2 9.9 100 30-132 2-108 (123)
51 PF06046 Sec6: Exocyst complex 93.9 1.2 2.6E-05 53.0 15.4 156 817-977 166-337 (566)
52 cd04010 C2B_RasA3 C2 domain se 93.8 0.31 6.6E-06 49.5 8.7 104 29-135 1-128 (148)
53 cd08405 C2B_Synaptotagmin-7 C2 93.8 0.24 5.1E-06 48.2 7.7 107 24-133 6-127 (136)
54 cd08690 C2_Freud-1 C2 domain f 93.7 0.39 8.5E-06 49.5 9.5 118 29-151 3-141 (155)
55 cd08373 C2A_Ferlin C2 domain f 93.4 0.57 1.2E-05 44.9 9.5 108 33-145 1-114 (127)
56 cd04026 C2_PKC_alpha_gamma C2 93.3 0.31 6.7E-06 46.9 7.6 102 29-133 14-125 (131)
57 cd01260 PH_CNK Connector enhan 92.9 0.093 2E-06 48.3 3.2 52 155-211 3-58 (96)
58 cd04035 C2A_Rabphilin_Doc2 C2 92.9 0.64 1.4E-05 44.3 8.9 93 29-125 16-119 (123)
59 cd01251 PH_centaurin_alpha Cen 92.7 0.082 1.8E-06 50.3 2.7 52 154-210 1-57 (103)
60 cd08675 C2B_RasGAP C2 domain s 92.6 0.45 9.8E-06 47.1 7.8 99 30-132 1-123 (137)
61 cd08375 C2_Intersectin C2 doma 92.5 1.1 2.3E-05 44.6 10.3 81 29-113 16-100 (136)
62 cd08521 C2A_SLP C2 domain firs 92.5 0.96 2.1E-05 42.7 9.6 96 29-127 15-123 (123)
63 cd04031 C2A_RIM1alpha C2 domai 92.5 0.74 1.6E-05 43.5 8.8 96 29-127 17-124 (125)
64 PF06292 DUF1041: Domain of Un 92.4 0.22 4.7E-06 49.0 5.2 18 713-730 1-18 (106)
65 cd04040 C2D_Tricalbin-like C2 92.3 0.57 1.2E-05 43.8 7.7 84 30-116 1-88 (115)
66 cd01236 PH_outspread Outspread 92.2 0.063 1.4E-06 52.0 1.3 29 154-182 1-37 (104)
67 cd00030 C2 C2 domain. The C2 d 91.8 0.67 1.4E-05 39.4 6.9 93 30-125 1-100 (102)
68 cd01233 Unc104 Unc-104 pleckst 91.8 0.11 2.4E-06 48.9 2.3 53 154-212 4-57 (100)
69 cd08410 C2B_Synaptotagmin-17 C 91.7 0.59 1.3E-05 45.9 7.3 102 29-133 15-127 (135)
70 cd08402 C2B_Synaptotagmin-1 C2 91.6 0.46 1E-05 46.2 6.5 102 29-133 16-127 (136)
71 cd04043 C2_Munc13_fungal C2 do 91.6 1.6 3.5E-05 41.6 9.9 111 29-147 2-123 (126)
72 cd04030 C2C_KIAA1228 C2 domain 91.4 0.85 1.8E-05 43.4 7.9 98 29-127 17-126 (127)
73 cd08403 C2B_Synaptotagmin-3-5- 91.3 0.5 1.1E-05 45.8 6.3 102 29-133 15-126 (134)
74 cd01247 PH_GPBP Goodpasture an 91.0 0.14 3E-06 48.0 2.1 45 155-206 2-50 (91)
75 cd08409 C2B_Synaptotagmin-15 C 90.9 0.82 1.8E-05 45.2 7.5 100 29-131 16-126 (137)
76 cd04041 C2A_fungal C2 domain f 90.8 0.74 1.6E-05 43.5 6.8 95 29-127 2-106 (111)
77 cd04045 C2C_Tricalbin-like C2 90.7 0.86 1.9E-05 44.1 7.2 97 30-129 3-103 (120)
78 cd08676 C2A_Munc13-like C2 dom 90.6 0.83 1.8E-05 46.9 7.4 94 27-127 27-153 (153)
79 cd01257 PH_IRS Insulin recepto 88.4 0.31 6.6E-06 47.1 2.3 50 153-207 3-59 (101)
80 cd01235 PH_SETbf Set binding f 88.3 0.39 8.4E-06 44.1 2.9 50 154-207 1-51 (101)
81 cd08379 C2D_MCTP_PRT_plant C2 87.9 0.11 2.3E-06 51.5 -1.1 50 451-500 25-74 (126)
82 cd08386 C2A_Synaptotagmin-7 C2 86.7 2.8 6E-05 39.9 7.7 96 29-127 17-123 (125)
83 cd01245 PH_RasGAP_CG5898 RAS G 86.4 0.27 5.8E-06 47.4 0.6 23 155-177 2-24 (98)
84 cd08387 C2A_Synaptotagmin-8 C2 86.2 3.5 7.5E-05 39.4 8.0 97 29-128 17-123 (124)
85 cd01252 PH_cytohesin Cytohesin 86.1 0.68 1.5E-05 45.1 3.3 50 156-211 4-54 (125)
86 cd04032 C2_Perforin C2 domain 85.8 3.5 7.7E-05 41.1 8.1 91 17-114 20-114 (127)
87 smart00233 PH Pleckstrin homol 85.3 0.71 1.5E-05 39.4 2.6 55 153-210 2-58 (102)
88 cd08404 C2B_Synaptotagmin-4 C2 85.2 4.9 0.00011 39.3 8.7 97 29-128 16-122 (136)
89 cd01250 PH_centaurin Centaurin 84.9 0.76 1.6E-05 41.0 2.8 52 154-210 1-55 (94)
90 cd04018 C2C_Ferlin C2 domain t 84.7 2.3 5.1E-05 43.5 6.4 98 29-130 1-126 (151)
91 cd01241 PH_Akt Akt pleckstrin 84.5 0.62 1.4E-05 44.2 2.1 54 154-212 3-57 (102)
92 cd01246 PH_oxysterol_bp Oxyste 84.4 0.73 1.6E-05 40.9 2.4 50 154-209 1-53 (91)
93 cd08390 C2A_Synaptotagmin-15-1 84.1 3.6 7.7E-05 39.0 7.0 96 29-127 15-121 (123)
94 PF10540 Membr_traf_MHD: Munc1 84.0 1.2 2.6E-05 45.0 4.0 97 1038-1140 3-125 (137)
95 cd04020 C2B_SLP_1-2-3-4 C2 dom 83.9 2.3 5E-05 43.6 6.0 87 27-116 26-123 (162)
96 cd08408 C2B_Synaptotagmin-14_1 83.8 2.6 5.5E-05 42.1 6.2 102 29-133 16-129 (138)
97 cd08691 C2_NEDL1-like C2 domai 83.6 11 0.00024 38.0 10.6 104 26-134 1-124 (137)
98 cd08406 C2B_Synaptotagmin-12 C 83.3 4.8 0.0001 40.4 7.8 101 29-132 16-126 (136)
99 cd08389 C2A_Synaptotagmin-14_1 83.2 4.8 0.0001 39.2 7.6 97 29-128 17-123 (124)
100 cd04038 C2_ArfGAP C2 domain pr 83.0 4.5 9.8E-05 41.1 7.6 81 29-113 3-85 (145)
101 cd04037 C2E_Ferlin C2 domain f 82.2 6 0.00013 38.4 7.8 100 30-134 2-107 (124)
102 cd04029 C2A_SLP-4_5 C2 domain 81.7 9.2 0.0002 37.4 8.9 96 29-127 16-124 (125)
103 cd01266 PH_Gab Gab (Grb2-assoc 81.6 0.98 2.1E-05 43.1 2.2 52 155-207 2-60 (108)
104 cd08392 C2A_SLP-3 C2 domain fi 81.4 6.1 0.00013 39.0 7.6 96 29-127 16-127 (128)
105 cd08381 C2B_PI3K_class_II C2 d 80.8 5.9 0.00013 38.5 7.3 96 29-127 14-121 (122)
106 cd04052 C2B_Tricalbin-like C2 80.8 4.4 9.4E-05 38.5 6.2 88 49-143 15-107 (111)
107 cd08395 C2C_Munc13 C2 domain t 80.4 7.1 0.00015 38.6 7.7 97 29-128 1-111 (120)
108 PF15413 PH_11: Pleckstrin hom 79.6 0.82 1.8E-05 44.4 1.0 24 154-177 1-24 (112)
109 cd04021 C2_E3_ubiquitin_ligase 79.4 13 0.00029 36.1 9.2 81 29-113 3-85 (125)
110 cd00821 PH Pleckstrin homology 79.3 1.4 3.1E-05 37.2 2.2 54 154-210 1-56 (96)
111 cd08682 C2_Rab11-FIP_classI C2 76.5 0.57 1.2E-05 45.0 -1.0 49 452-500 22-76 (126)
112 cd04039 C2_PSD C2 domain prese 74.9 11 0.00025 36.1 7.2 80 30-113 3-91 (108)
113 cd04050 C2B_Synaptotagmin-like 74.6 0.67 1.4E-05 43.3 -1.1 62 451-520 22-84 (105)
114 cd01263 PH_anillin Anillin Ple 71.4 2.8 6.1E-05 42.1 2.3 57 153-212 2-61 (122)
115 cd08393 C2A_SLP-1_2 C2 domain 69.6 25 0.00055 34.2 8.4 96 29-127 16-124 (125)
116 cd04027 C2B_Munc13 C2 domain s 68.7 1.2 2.6E-05 43.1 -0.8 48 453-500 25-72 (127)
117 cd04016 C2_Tollip C2 domain pr 68.4 0.94 2E-05 44.6 -1.7 52 449-500 21-73 (121)
118 cd01264 PH_melted Melted pleck 68.3 2.3 4.9E-05 41.5 0.9 23 155-177 3-27 (101)
119 cd08378 C2B_MCTP_PRT_plant C2 66.6 1.8 4E-05 41.9 -0.1 65 452-522 19-84 (121)
120 cd04015 C2_plant_PLD C2 domain 66.4 1.1 2.3E-05 45.7 -1.8 64 452-521 60-124 (158)
121 PLN03200 cellulose synthase-in 66.3 19 0.0004 50.3 8.9 109 29-142 1981-2097(2102)
122 cd04048 C2A_Copine C2 domain f 65.4 17 0.00037 34.7 6.2 93 34-127 6-112 (120)
123 cd08388 C2A_Synaptotagmin-4-11 65.3 16 0.00035 35.8 6.1 85 29-116 17-111 (128)
124 cd01237 Unc112 Unc-112 pleckst 63.2 5.4 0.00012 39.6 2.4 44 162-210 13-59 (106)
125 PF14837 INTS5_N: Integrator c 61.5 30 0.00064 38.2 7.8 163 827-1035 33-205 (213)
126 KOG2180|consensus 61.0 1.8E+02 0.004 37.3 15.0 245 665-937 181-462 (793)
127 cd08680 C2_Kibra C2 domain fou 60.9 61 0.0013 32.2 9.2 96 29-127 15-124 (124)
128 cd04013 C2_SynGAP_like C2 doma 59.9 1.5 3.2E-05 45.0 -2.2 50 451-500 28-78 (146)
129 cd04032 C2_Perforin C2 domain 58.4 2.9 6.2E-05 41.7 -0.4 49 452-500 50-100 (127)
130 cd04042 C2A_MCTP_PRT C2 domain 58.2 2.3 5E-05 40.5 -1.0 66 453-523 24-90 (121)
131 cd08376 C2B_MCTP_PRT C2 domain 57.8 2.4 5.1E-05 39.9 -1.0 48 453-500 24-72 (116)
132 cd08685 C2_RGS-like C2 domain 57.6 33 0.00071 33.5 6.7 97 29-127 13-119 (119)
133 cd08407 C2B_Synaptotagmin-13 C 56.4 39 0.00084 34.3 7.2 101 29-132 16-128 (138)
134 cd04047 C2B_Copine C2 domain s 55.9 30 0.00064 32.4 5.9 83 33-119 5-100 (110)
135 cd04028 C2B_RIM1alpha C2 domai 55.7 88 0.0019 32.3 9.6 105 28-135 29-143 (146)
136 PF04100 Vps53_N: Vps53-like, 55.2 4.3E+02 0.0093 31.4 16.7 183 667-876 168-383 (383)
137 cd04018 C2C_Ferlin C2 domain t 54.2 3 6.5E-05 42.8 -1.0 50 451-500 36-87 (151)
138 cd04011 C2B_Ferlin C2 domain s 53.7 2.7 5.8E-05 39.6 -1.4 66 452-522 23-93 (111)
139 PF09921 DUF2153: Uncharacteri 53.3 35 0.00076 35.1 6.2 30 915-944 26-56 (126)
140 cd08377 C2C_MCTP_PRT C2 domain 53.2 3.3 7.1E-05 38.9 -0.9 50 451-500 23-72 (119)
141 cd01238 PH_Tec Tec pleckstrin 52.6 10 0.00022 36.4 2.3 50 155-209 3-59 (106)
142 cd08401 C2A_RasA2_RasA3 C2 dom 52.3 2.7 6E-05 40.7 -1.6 49 452-500 24-73 (121)
143 cd04009 C2B_Munc13-like C2 dom 51.8 68 0.0015 31.4 7.9 82 29-113 17-112 (133)
144 cd04044 C2A_Tricalbin-like C2 51.6 3.5 7.5E-05 38.8 -1.0 49 452-500 26-76 (124)
145 cd04033 C2_NEDD4_NEDD4L C2 dom 51.1 2.8 6.1E-05 40.3 -1.7 49 452-500 23-78 (133)
146 cd08391 C2A_C2C_Synaptotagmin_ 50.0 4.1 9E-05 38.1 -0.8 49 452-500 30-79 (121)
147 KOG1030|consensus 49.7 32 0.00069 36.9 5.5 92 30-125 8-102 (168)
148 cd08681 C2_fungal_Inn1p-like C 49.6 5.5 0.00012 37.5 0.0 64 452-521 24-89 (118)
149 cd04021 C2_E3_ubiquitin_ligase 49.3 4 8.6E-05 39.7 -1.0 48 452-500 24-72 (125)
150 cd04054 C2A_Rasal1_RasA4 C2 do 48.4 4.1 8.8E-05 39.2 -1.1 48 453-500 24-72 (121)
151 KOG2059|consensus 47.7 63 0.0014 41.2 8.3 127 28-158 5-138 (800)
152 cd08678 C2_C21orf25-like C2 do 47.0 3.6 7.8E-05 39.7 -1.7 65 453-522 21-87 (126)
153 cd08686 C2_ABR C2 domain in th 46.5 4.2 9.1E-05 40.7 -1.3 49 450-499 15-68 (118)
154 cd04024 C2A_Synaptotagmin-like 46.2 4.9 0.00011 38.1 -0.9 48 453-500 27-75 (128)
155 PF00169 PH: PH domain; Inter 45.1 16 0.00035 32.0 2.2 38 475-512 65-103 (104)
156 cd00900 PH-like Pleckstrin hom 44.9 12 0.00025 32.0 1.3 51 154-207 1-54 (99)
157 cd08692 C2B_Tac2-N C2 domain s 44.0 78 0.0017 32.6 7.1 99 29-129 15-123 (135)
158 cd04031 C2A_RIM1alpha C2 domai 42.4 7.4 0.00016 36.9 -0.3 56 461-521 53-112 (125)
159 cd08400 C2_Ras_p21A1 C2 domain 41.9 6.2 0.00013 38.4 -1.0 48 452-500 24-73 (126)
160 PLN03008 Phospholipase D delta 41.8 6.4 0.00014 50.3 -1.1 50 451-500 78-128 (868)
161 cd08373 C2A_Ferlin C2 domain f 40.4 7.2 0.00016 37.5 -0.7 49 452-500 17-68 (127)
162 cd01259 PH_Apbb1ip Apbb1ip (Am 39.8 16 0.00034 37.0 1.4 48 156-210 4-56 (114)
163 cd08688 C2_KIAA0528-like C2 do 39.8 5.9 0.00013 37.4 -1.4 49 452-500 23-75 (110)
164 PF12416 DUF3668: Cep120 prote 39.7 1.7E+02 0.0038 34.4 9.9 115 32-151 4-136 (340)
165 cd08375 C2_Intersectin C2 doma 39.4 8 0.00017 38.5 -0.6 48 453-500 39-87 (136)
166 KOG0696|consensus 39.0 16 0.00036 44.0 1.7 47 453-500 204-258 (683)
167 cd08381 C2B_PI3K_class_II C2 d 38.4 7.8 0.00017 37.7 -0.9 64 453-521 36-108 (122)
168 cd04022 C2A_MCTP_PRT_plant C2 38.1 5.8 0.00013 38.2 -1.8 65 452-520 23-91 (127)
169 cd04052 C2B_Tricalbin-like C2 37.7 6.8 0.00015 37.2 -1.4 50 451-500 14-65 (111)
170 cd01244 PH_RasGAP_CG9209 RAS_G 37.6 14 0.0003 35.8 0.7 38 162-204 14-51 (98)
171 cd04046 C2_Calpain C2 domain p 37.0 8.4 0.00018 37.3 -0.9 63 453-521 27-89 (126)
172 cd04039 C2_PSD C2 domain prese 37.0 7.3 0.00016 37.4 -1.3 48 453-500 29-78 (108)
173 PF06861 BALF1: BALF1 protein; 36.4 1.7E+02 0.0037 31.9 8.3 42 687-729 24-71 (182)
174 cd08691 C2_NEDL1-like C2 domai 36.2 7.4 0.00016 39.3 -1.4 81 461-545 45-130 (137)
175 cd04010 C2B_RasA3 C2 domain se 36.0 8.8 0.00019 39.2 -0.9 66 453-523 22-108 (148)
176 cd04036 C2_cPLA2 C2 domain pre 35.4 9.4 0.0002 36.3 -0.8 65 453-523 24-92 (119)
177 cd04038 C2_ArfGAP C2 domain pr 35.2 7.6 0.00017 39.4 -1.5 48 453-500 25-72 (145)
178 cd04014 C2_PKC_epsilon C2 doma 35.0 7.5 0.00016 37.7 -1.5 49 451-500 36-85 (132)
179 cd04025 C2B_RasA1_RasA4 C2 dom 34.8 8.5 0.00018 36.7 -1.2 48 453-500 24-72 (123)
180 cd01219 PH_FGD FGD (faciogenit 34.6 20 0.00043 34.2 1.2 51 154-208 4-58 (101)
181 cd04020 C2B_SLP_1-2-3-4 C2 dom 34.6 8.2 0.00018 39.6 -1.4 58 460-522 63-124 (162)
182 cd01252 PH_cytohesin Cytohesin 32.9 31 0.00068 33.7 2.3 25 490-514 91-115 (125)
183 cd04009 C2B_Munc13-like C2 dom 32.9 13 0.00028 36.4 -0.3 59 460-523 54-117 (133)
184 cd00030 C2 C2 domain. The C2 d 32.5 12 0.00026 31.7 -0.5 50 451-500 21-72 (102)
185 cd04041 C2A_fungal C2 domain f 31.3 11 0.00024 35.6 -1.0 41 460-500 36-80 (111)
186 cd04043 C2_Munc13_fungal C2 do 30.1 13 0.00029 35.4 -0.7 39 462-500 37-76 (126)
187 cd04045 C2C_Tricalbin-like C2 29.6 12 0.00027 36.2 -1.1 49 452-500 24-73 (120)
188 cd08685 C2_RGS-like C2 domain 29.3 11 0.00023 36.8 -1.6 49 452-500 34-89 (119)
189 cd01253 PH_beta_spectrin Beta- 29.1 24 0.00052 33.1 0.8 21 156-176 3-30 (104)
190 PF07393 Sec10: Exocyst comple 28.9 1.3E+03 0.028 29.3 20.5 198 764-1021 412-626 (710)
191 cd01238 PH_Tec Tec pleckstrin 27.5 39 0.00084 32.6 1.9 31 478-508 73-103 (106)
192 PF04286 DUF445: Protein of un 27.1 9.2E+02 0.02 27.0 18.7 131 790-937 100-236 (367)
193 cd08394 C2A_Munc13 C2 domain f 26.6 13 0.00028 37.8 -1.5 46 453-499 23-68 (127)
194 cd08388 C2A_Synaptotagmin-4-11 26.5 10 0.00022 37.2 -2.3 48 453-500 41-95 (128)
195 cd08386 C2A_Synaptotagmin-7 C2 26.2 13 0.00029 35.3 -1.5 66 453-523 40-112 (125)
196 cd01265 PH_PARIS-1 PARIS-1 ple 26.0 45 0.00098 31.5 2.0 34 478-511 60-93 (95)
197 cd08395 C2C_Munc13 C2 domain t 25.9 14 0.0003 36.7 -1.5 55 463-522 40-98 (120)
198 smart00233 PH Pleckstrin homol 25.3 52 0.0011 28.0 2.1 35 477-511 65-100 (102)
199 KOG0930|consensus 25.0 40 0.00087 38.9 1.7 58 150-211 258-315 (395)
200 cd08675 C2B_RasGAP C2 domain s 24.9 19 0.00042 35.8 -0.7 51 450-500 19-89 (137)
201 PF10358 NT-C2: N-terminal C2 24.8 6.6E+02 0.014 24.7 9.9 112 26-146 5-134 (143)
202 PF14643 DUF4455: Domain of un 23.8 1.4E+03 0.03 27.9 17.2 156 763-926 150-318 (473)
203 KOG1011|consensus 22.6 3.9E+02 0.0085 34.4 9.2 112 980-1113 851-966 (1283)
204 cd04049 C2_putative_Elicitor-r 21.9 20 0.00043 34.3 -1.2 49 452-500 24-77 (124)
205 KOG3046|consensus 21.4 2.6E+02 0.0056 29.7 6.4 69 659-727 8-101 (147)
206 cd04051 C2_SRC2_like C2 domain 21.3 27 0.00058 33.4 -0.4 50 451-500 22-78 (125)
207 PF15413 PH_11: Pleckstrin hom 21.1 52 0.0011 32.2 1.4 22 490-511 91-112 (112)
208 cd08521 C2A_SLP C2 domain firs 20.8 24 0.00053 33.3 -0.8 56 462-522 53-111 (123)
209 cd08382 C2_Smurf-like C2 domai 20.8 22 0.00049 34.3 -1.1 47 453-500 24-71 (123)
210 cd01245 PH_RasGAP_CG5898 RAS G 20.4 37 0.00079 33.1 0.2 50 461-510 47-97 (98)
No 1
>KOG3543|consensus
Probab=100.00 E-value=5e-320 Score=2625.88 Aligned_cols=877 Identities=63% Similarity=1.087 Sum_probs=862.7
Q ss_pred CCCccccccCCCCCccccccccceEEEEEEEEEEEeeccccccCCCCeEEEEEEeeCCcccccccccccCCcccccCccc
Q psy11343 1 TQGSISRLEGEEYTETVSLSKVDITLNFQLEVIVMEVKGLKSLAPNRIVYCTMEVEGGEKLQTDQAEASKPMWDTQADFS 80 (1150)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~k~d~~l~f~lev~v~ev~~l~~~~~~~~vyctme~eg~~kl~td~~ea~~p~w~tq~df~ 80 (1150)
|.||+++ |++++++++|||+||+|.|++||||||||||||+|||||||||||||| +||||||||||||.|||||||+
T Consensus 316 s~~s~~~--~~~ed~d~~ltksdv~la~smevvvmevqglksvapnrivyctmeveg-eklqtdqaeaskp~wgtqgdfs 392 (1218)
T KOG3543|consen 316 SSGSLNK--GDSEDGDVTLTKSDVSLALSMEVVVMEVQGLKSVAPNRIVYCTMEVEG-EKLQTDQAEASKPKWGTQGDFS 392 (1218)
T ss_pred ccCCccc--CCcccccceeeccceeEEeeeeEEEeeeccccccCCCeeEEEEEEecc-cccccchhhhcCCCCCcCCCcc
Confidence 5688888 999999999999999999999999999999999999999999999995 9999999999999999999999
Q ss_pred cccccceeEEEEeeccCCcccccccccceEEeecCCCCCCCccccccccCCCCCCcCceEEEEEEecCCCCCcccceeee
Q psy11343 81 TNQPLPAIKVKLFTENPGMLALEDKELGKVILRPTPLSSKAPEWHKMLVPKNCADQDLKIKIACRMEKPLNMKHCGYLFA 160 (1150)
Q Consensus 81 t~~plp~~kvkl~~e~~g~l~~edkelg~v~~~p~~~~~~~~~~~~m~~~k~~~d~~l~i~~~~~m~kp~n~k~~gy~~~ 160 (1150)
|+||||+||||||||++|||||||||||||||+|||||+|.||||+|+|||||+|||||||||||||||+||||||||||
T Consensus 393 tthplpvvkvklftestgvlaledkelgrvil~ptpns~ks~ewh~mtvpknsqdqdlkiklavrmdkp~nmkhsgylya 472 (1218)
T KOG3543|consen 393 TTHPLPVVKVKLFTESTGVLALEDKELGRVILQPTPNSAKSPEWHTMTVPKNSQDQDLKIKLAVRMDKPPNMKHSGYLYA 472 (1218)
T ss_pred cCCCCceeEEEEEeecceeEEeechhhCeEEEecCCCCcCCccceeeecCCCCcCccceEEEEEeccCCCccccceeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhHHHhhhceeEEEEEeeceehhhccccccCCCCccccccccceeeeccCCccCCCCCCCcchhhhcccCCcccCCCC
Q psy11343 161 YGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVDYIEPASEKVSPRDSISQAHIRNASPITRQNSH 240 (1150)
Q Consensus 161 ~g~~~~kkwk~r~~~lvqvsqytfa~cs~~e~ks~p~e~~ql~g~tvdy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1150)
+|+++||+|||||||||||||||||||||||||++|+|+||||||||||++|.+
T Consensus 473 ig~nvwkrwkkrffvlvqvsqytfamcsyrekkaepqel~qldgytvdytdp~p-------------------------- 526 (1218)
T KOG3543|consen 473 IGRNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELIQLDGYTVDYTDPSP-------------------------- 526 (1218)
T ss_pred hhhHHHHHhHhhEEEEEEhhhhhhHhhhhhhcccChHHHhhccCeeeccCCCCC--------------------------
Confidence 999999999999999999999999999999999999999999999999999965
Q ss_pred CCCCCcccCCccchhhHHHHHHHHhhheeeeeeeccccCCCCCCchhHHHhhhhhhHhHHHHHHhhccccccchhHHHHH
Q psy11343 241 TDNLDKEVMDPQDSQEKQEEERKRRIQLYVFVSRCIAYPFNSKQSTDMIRRHSKITRHLLEVIQSRFQVPMLHTSIVFLL 320 (1150)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~v~rc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1150)
T Consensus 527 -------------------------------------------------------------------------------- 526 (1218)
T KOG3543|consen 527 -------------------------------------------------------------------------------- 526 (1218)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhcCCccccchHHHHhhhhhhhhhhhcchhhhhhhhcCCccchhhHHHHHHhHhhhhcccccccCcchhhhhhhhhhh
Q psy11343 321 QAFLRGDTQIMTDEAFQNAVQSYTDVFLKSDRVLNFVQSGACSLYDFREVFRKNIQKRVRSLPEIDGLSKETVLSSWMAK 400 (1150)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1150)
T Consensus 527 -------------------------------------------------------------------------------- 526 (1218)
T KOG3543|consen 527 -------------------------------------------------------------------------------- 526 (1218)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcccccccCchHHHhHhhhhHHHhhHHHHHHHHHHHHHHHHhhhhHhHHhhccCchhHHHHHhhhcccccccccc
Q psy11343 401 FDCILKVGEEDLKRPNRALQQALNCELILSKEQLYDMFQQILVIKKFEHQLLFNALQLDSADEQTAAIRRELDNLEGGRY 480 (1150)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~el~~l~ggk~ 480 (1150)
|++||+.
T Consensus 527 -------------------------------------------------------------------------glqgg~~ 533 (1218)
T KOG3543|consen 527 -------------------------------------------------------------------------GLQGGKH 533 (1218)
T ss_pred -------------------------------------------------------------------------ccccchH
Confidence 5889999
Q ss_pred cccccccCccEEEeccCcccchhhhhHHhhhhcCcccccCCCCCccccccccc-ccCCchhhhhcCcccccccCCCCcch
Q psy11343 481 FFNAFKESESILYACDDENEYHLWVMAMYRATGQSHKPTPLNSNAVKNSTISK-LQGDTDKARKHGMEEFISADPSKMEH 559 (1150)
Q Consensus 481 FF~~vkegD~i~fa~dDE~er~lwVqamyRatGQs~Kpv~p~~~~~~~~tm~~-~~g~tD~a~~~Gi~dfis~~p~~~dH 559 (1150)
|||||||||+++||+|||+||+||||||||||||+||||||.+ .++++ .||-.|+|++|||++|||+|||+|||
T Consensus 534 ffnavkegdtvifasddeqdr~lwvqamyratgqsykpvpp~~-----qklnpkgg~yadraqkhgmdefisanpcnfdh 608 (1218)
T KOG3543|consen 534 FFNAVKEGDTVIFASDDEQDRHLWVQAMYRATGQSYKPVPPKQ-----QKLNPKGGGYADRAQKHGMDEFISANPCNFDH 608 (1218)
T ss_pred HHHHhccCceEEeccCchhhhhHHHHHHHHhhCCcCCCCCchh-----hccCCccCchhhhHHhcChhhhhcCCCCCCch
Confidence 9999999999999999999999999999999999999999996 23665 55669999999999999999999999
Q ss_pred HHHHHHHhhcccccccCCCCCCCCcCCcchhHHHHHHHhhccccchhhhhhchHHHhhccCCCcccchhHHHHHHHHhhc
Q psy11343 560 SSLFKSLQSLTLEYRLNDPYCSMGWYSPGQLFVLDEYTARYGVRGCYRHLILLDDLLDRSEKNTMIDPTLIHCSFAFCSS 639 (1150)
Q Consensus 560 ~~LF~~Lq~~tL~~rlnD~~~slGwFsp~qqeILDEfaaRYGVr~iyRHfscLs~ll~~~~~G~~IdpTLL~ns~AFcA~ 639 (1150)
++||..+||+||+||+||||||+|||||||+||||||||||||||||||+|||++|++++++|++||||||||+|||||+
T Consensus 609 a~lf~~vqrltldhrlndsysclgwfspgqvfvldeycarygvrgchrhlcyl~~lle~aenga~idptllhysfafcas 688 (1218)
T KOG3543|consen 609 AHLFSDVQRLTLDHRLNDSYSCLGWFSPGQVFVLDEYCARYGVRGCHRHLCYLSNLLEKAENGALIDPTLLHYSFAFCAS 688 (1218)
T ss_pred HHHHHHHHHHhhhhhcCCcchhccccCCCceeeeHHHHHHhhhhhHHHHHHHHHHHHHhccCCcccChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccccccChhhHhhHHHHHHHHHHHHhhhccccccccCCCCchhhhhhHHHHHHHhhhcccCCCCChHHHHHH
Q psy11343 640 HVLGNRPEGVVGTVTQEEKNRFNVIKERLKELLINQITNFRYAFPFGRPEGILKSTLSLLERVLMKDSVTPVQPEEVREV 719 (1150)
Q Consensus 640 hv~gNapd~fvgtvTnfgKErFvkLldqLhn~LriqLS~YR~~FPfsrPE~aLKsTVdLLtsVrMKv~~~p~ppevVrec 719 (1150)
|||||+||| +||||.+|||||.+|++||+.+|++|||+|||||||||||||||+|++||+||+|||+.+|+||++||.+
T Consensus 689 hvhgnrpdg-igtvtveekerfeeikerlrvllenqithfrycfpfgrpegalkatlsllervlmkdivtpvp~eevk~v 767 (1218)
T KOG3543|consen 689 HVHGNRPDG-IGTVTVEEKERFEEIKERLRVLLENQITHFRYCFPFGRPEGALKATLSLLERVLMKDIVTPVPPEEVKAV 767 (1218)
T ss_pred hccCCCCCC-cceeeehhHHHHHHHHHHHHHHHHhhhhceEeeccCCCcchHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHhhcchhhhhhhhhhhhHHHHHHHHHHHHH
Q psy11343 720 IKKCLETAALINYSKLSSEARVEEDLTAEGGVSPSKKLEDLIHLGELCVDLLQQNEEHYAEAFAWYSDLLVEHAEIFWSL 799 (1150)
Q Consensus 720 VKaCLesAa~~nYsr~~e~a~~E~~~~~e~~~p~~K~Ldfw~kLieLcVsVIeEDke~Yap~fnqFPqeL~isAEvfWsL 799 (1150)
||+||+.||++||+|+++||+||+.+ +...|+.++||+++||+||||+||+||+|||.++|+||||+|..|||+||+|
T Consensus 768 irkcle~aalvnytrl~eyakiee~m--~~a~~~a~kled~irlaelcievlqqneehhgeafawwsdll~ehae~fwsl 845 (1218)
T KOG3543|consen 768 IRKCLEDAALVNYTRLCEYAKIEERM--GIAVSPAQKLEDMIRLAELCIEVLQQNEEHHGEAFAWWSDLLSEHAEIFWSL 845 (1218)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887 6667889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCCCCCccHHHHHHHHhhccccccCCccccchhhhhHHHHHHHHhccchhHHHHHHHhHhccccccc
Q psy11343 800 FAVDMDQVLAEQPSDTWDSFPLFQILNEYLRADENLKNGRFHQHLREYFAPLVVRYVDLMESSIAQSIHKGFEKEKWEIK 879 (1150)
Q Consensus 800 Fa~DMd~ALEeh~~d~~DsFkVkwLyNeYvr~lp~lKn~vfe~~L~~wFePfV~rWLDenEess~qfL~~AfErDKwep~ 879 (1150)
|++|||.|||.||+|+|||||||||+|+|++++..+|||+||.|+.+.|.|+|+||+|+||++|+|+||.+|++++|+|+
T Consensus 846 fsvdmdsalevqp~dswdsfplfqllndflr~d~~lcngkfhkhlq~~f~plvvryvdlmessiaqsihrgfe~e~wepv 925 (1218)
T KOG3543|consen 846 FSVDMDSALEVQPHDSWDSFPLFQLLNDFLRSDSSLCNGKFHKHLQQQFQPLVVRYVDLMESSIAQSIHRGFEKEKWEPV 925 (1218)
T ss_pred HhcccchhcccCCCCccccchHHHHHHHHHhhhhhcccchhHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccccccccccch
Q psy11343 880 GNGCATSEDLFWKLDALQSFIRDLHWPDQEFNQHLEQRLKLMACDMIESCIMRTESAFQSWLKKGVSFVSTDYIIHSEMC 959 (1150)
Q Consensus 880 knGqqTSEDLF~qLnqlqeFIrkLeWPDpef~ahlm~RfaktISkmIeqYadrt~~~F~s~l~Ke~~~~stD~ilP~e~C 959 (1150)
+|||.||||+||+|+++++||.+||||+++|++|+.+|++.|+|+||+.|++||..+|++|++|.++ ||||+||+++|
T Consensus 926 kngsatsedlfwkldalqtfv~dlhwpeeef~khleqrlklmasdmie~cvkrtrtafe~klqka~k--std~r~p~svc 1003 (1218)
T KOG3543|consen 926 KNGSATSEDLFWKLDALQTFVIDLHWPEEEFRKHLEQRLKLMASDMIEKCVKRTRTAFESKLQKAKK--STDYRLPSSVC 1003 (1218)
T ss_pred cCCCcchHhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc--CccccccHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhhhhHHHHhhhhhhhhhccCCccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhhhhccc---
Q psy11343 960 AMINIIADAKNQSLKLCAVDGIDVHQYHIKIDDLIEKTSANMIQGLISKLVAVLENTLAKLSRYDEGSLIGSILSLT--- 1036 (1150)
Q Consensus 960 immNniqqlRvQleKlc~~~gG~e~qyh~~id~~Le~~~~~mls~L~~KL~~VLe~vL~KLSRyDEgsl~sSiLSlt--- 1036 (1150)
+|+||+.+++.|+.|+|.++|| +||||++||++||++++.|++.|+.||..|||++|+||||||||+++|||||||
T Consensus 1004 tmfnvmvdak~qstklc~~~gg-e~qyhskidelie~~vkemisllv~kfv~vlegvl~klsrydegt~fss~lsftvka 1082 (1218)
T KOG3543|consen 1004 TMFNVMVDAKAQSTKLCSMEGG-EHQYHSKIDELIEETVKEMISLLVAKFVTVLEGVLAKLSRYDEGTLFSSFLSFTVKA 1082 (1218)
T ss_pred hhhheeeecccceeeeeeccCc-hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccccCchhhhhhhhhHhh
Confidence 9999999999999999998888 999999999999999999999999999999999999999999999999999998
Q ss_pred -----cccCCcchhhhhhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhhHHHHHHh
Q psy11343 1037 -----NVSGNGKELGQAYVNFSRNNMDQIRSKINDELWILNFFELWYTAQMKVLCNWLSERVDNSLHVYQCNCLSHCVKK 1111 (1150)
Q Consensus 1037 -----~v~kPg~dl~~~Yv~FvR~n~d~Lr~kV~dELw~l~~fe~wy~~~~~~i~~WLteR~d~~Lh~yQl~~L~~ivKk 1111 (1150)
+|||||||++++|++|+|+|+|.||++|++|+|++.||++||.++|+.||+|||||||+|||.||+++|++||||
T Consensus 1083 a~kyvdvpkpgmd~ad~yvtfvr~~qd~lr~kvneemyie~lfdqwy~ssmkvic~wltdrldlqlhiyqlktli~ivkk 1162 (1218)
T KOG3543|consen 1083 ASKYVDVPKPGMDVADAYVTFVRHSQDVLRDKVNEEMYIERLFDQWYNSSMKVICTWLTDRLDLQLHIYQLKTLIRIVKK 1162 (1218)
T ss_pred hhhcccCCCCCcccccceeeeecccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccccccccccccHHHHHHhhhhhhhcccccCC
Q psy11343 1112 MYSDFELQGVMEDKLNSKTYQTVSQRMQTEEATCALTMK 1150 (1150)
Q Consensus 1112 ~y~df~lqgv~~~~l~~~~y~tv~~r~~~ee~~~~~~~~ 1150 (1150)
+|+||+||||+|++||||+|+||++|||+||||++++.+
T Consensus 1163 tyrdfrlqgvle~tlnskty~ti~rrltveeatasvseg 1201 (1218)
T KOG3543|consen 1163 TYRDFRLQGVLEETLNSKTYETIRRRLTVEEATASVSEG 1201 (1218)
T ss_pred HHHhhhhcCcchhhhcCcchhhHHhhhhhhhhhhhhhhc
Confidence 999999999999999999999999999999999998764
No 2
>KOG1011|consensus
Probab=100.00 E-value=6.2e-149 Score=1250.99 Aligned_cols=574 Identities=22% Similarity=0.329 Sum_probs=525.0
Q ss_pred hHHhhccCchhHHHHHhhhcccccccccccccccccCccEEEeccCcccchhh--hhHHhhh----hcCcccccCCCCCc
Q psy11343 452 LFNALQLDSADEQTAAIRRELDNLEGGRYFFNAFKESESILYACDDENEYHLW--VMAMYRA----TGQSHKPTPLNSNA 525 (1150)
Q Consensus 452 ~~~~~~~~~~~~~~~~i~~el~~l~ggk~FF~~vkegD~i~fa~dDE~er~lw--VqamyRa----tGQs~Kpv~p~~~~ 525 (1150)
-|+|+||++.++||++|.+|||++|++||+|+||+..|+|++++||||++..+ .|.++|+ .||+.++|++++
T Consensus 318 pyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtvievrtls-- 395 (1283)
T KOG1011|consen 318 PYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS-- 395 (1283)
T ss_pred CcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc--
Confidence 49999999999999999999999999999999999999999999999998777 8999999 699999999998
Q ss_pred cccccccc---ccCCchhhhhcC-cccccccC--------CC----CcchHHHHHHHhhcccccccCCCCCCC---CcCC
Q psy11343 526 VKNSTISK---LQGDTDKARKHG-MEEFISAD--------PS----KMEHSSLFKSLQSLTLEYRLNDPYCSM---GWYS 586 (1150)
Q Consensus 526 ~~~~tm~~---~~g~tD~a~~~G-i~dfis~~--------p~----~~dH~~LF~~Lq~~tL~~rlnD~~~sl---GwFs 586 (1150)
|+|++ ++++||+++++| |+.+||++ |+ +|.|++||+.+.-. -..++++..+.. .||+
T Consensus 396 ---gemdvwynlekrtdksavsgairlhisveikgeekvapyhvqytclhenlfh~~~~~-~~vkip~argddawkv~fd 471 (1283)
T KOG1011|consen 396 ---GEMDVWYNLEKRTDKSAVSGAIRLHISVEIKGEEKVAPYHVQYTCLHENLFHAHTDD-GEVKIPKARGDDAWKVYFD 471 (1283)
T ss_pred ---cchhhhcchhhccchhhccceEEEEEEEEEcCccccccceeeehhHhhhhHHhhhcc-cceeCCccCCCccceehhh
Confidence 78998 889999999999 99999964 43 67899999977543 233444444444 4599
Q ss_pred cchhHHHHHHHhhccccchhh---hhhchHHHhhccCCCc-ccchhHHHHHHHHhhccc-ccC--CCCccccccChhhHh
Q psy11343 587 PGQLFVLDEYTARYGVRGCYR---HLILLDDLLDRSEKNT-MIDPTLIHCSFAFCSSHV-LGN--RPEGVVGTVTQEEKN 659 (1150)
Q Consensus 587 p~qqeILDEfaaRYGVr~iyR---HfscLs~ll~~~~~G~-~IdpTLL~ns~AFcA~hv-~gN--apd~fvgtvTnfgKE 659 (1150)
+++|+|+||||||||||+||| ||+||+++|| |+|+ +||+|||+||||||||++ ++| +|||| ++||||||
T Consensus 472 etaqeivdefamrygiesiyqamthfacl~skym--cpgvpavmstllaninayyahttastnvsasdrf--aasnfgke 547 (1283)
T KOG1011|consen 472 ETAQEIVDEFAMRYGIESIYQAMTHFACLSSKYM--CPGVPAVMSTLLANINAYYAHTTASTNVSASDRF--AASNFGKE 547 (1283)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccc--CCCcHHHHHHHHHhhhHHhhccccccccCcchhh--hhhcccHH
Confidence 999999999999999999999 9999999999 8999 999999999999999995 566 89997 58999999
Q ss_pred hHHHHHHHHHHHHhhhccccccccCCCCchhh--hhhHHHHHHHh---hhcccCCCCCh---HHHHHHHHHHHHHHHHHH
Q psy11343 660 RFNVIKERLKELLINQITNFRYAFPFGRPEGI--LKSTLSLLERV---LMKDSVTPVQP---EEVREVIKKCLETAALIN 731 (1150)
Q Consensus 660 rFvkLldqLhn~LriqLS~YR~~FPfsrPE~a--LKsTVdLLtsV---rMKv~~~p~pp---evVrecVKaCLesAa~~n 731 (1150)
||++|||||||+||||||.|||+||+|+||++ |||||||||+| |||++++++|| +|||+|+||||++||.-.
T Consensus 548 rfvklldqlhnslridls~yrnnfpassperlqdlkstvdlltsitffrmkvqelqspprasqvvkdcvkaclnstye~i 627 (1283)
T KOG1011|consen 548 RFVKLLDQLHNSLRIDLSAYRNNFPASSPERLQDLKSTVDLLTSITFFRMKVQELQSPPRASQVVKDCVKACLNSTYEYI 627 (1283)
T ss_pred HHHHHHHHHhhhheeeHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997 99999999999 99999876654 999999999999999877
Q ss_pred HHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHhhcchhhhhhhhhhhhHHH---HHHHHHHHHHhHHHHHHHH
Q psy11343 732 YSKLSSEARVEEDLTAEGGVSPSKKLEDLIHLGELCVDLLQQNEEHYAEAFAWYSDLL---VEHAEIFWSLFAVDMDQVL 808 (1150)
Q Consensus 732 Ysr~~e~a~~E~~~~~e~~~p~~K~Ldfw~kLieLcVsVIeEDke~Yap~fnqFPqeL---~isAEvfWsLFa~DMd~AL 808 (1150)
|+.+-+. -.|+++||+||++||+|||+|||||+++|+|++||||||| ++|||+||++|++||+|||
T Consensus 628 fnnchel-----------ys~s~~nldfw~klit~ivsiieedknsytp~lnqfpqelnvgk~saevmw~lfaqdmk~al 696 (1283)
T KOG1011|consen 628 FNNCHEL-----------YSPSITNLDFWYKLITLIVSIIEEDKNSYTPALNQFPQELNVGKLSAEVMWSLFAQDMKYAL 696 (1283)
T ss_pred HHHHHHh-----------cCccccchhhHHHHHHHHHHHHHhccccCChhhhhChhhhccccchHHHHHHHHHHHHHHHH
Confidence 7776542 2368899999999999999999999999999999999999 9999999999999999999
Q ss_pred hcCCCCC-C---CC----ccHHHHHHHHhhccccccCCccccchhhhhHHHHHHHHhccchhHHHHHHHhHhcccccccC
Q psy11343 809 AEQPSDT-W---DS----FPLFQILNEYLRADENLKNGRFHQHLREYFAPLVVRYVDLMESSIAQSIHKGFEKEKWEIKG 880 (1150)
Q Consensus 809 Eeh~~d~-~---Ds----FkVkwLyNeYvr~lp~lKn~vfe~~L~~wFePfV~rWLDenEess~qfL~~AfErDKwep~k 880 (1150)
|||++++ + || ||||||||+||+++|.||+++|| ||+||+||||+||||||++|++|++||++||| +
T Consensus 697 eeh~k~~~cksadymnl~fkvk~ly~eyv~dlp~~k~~vpe--ypawf~pfv~qwldenee~s~dflrga~e~dk----k 770 (1283)
T KOG1011|consen 697 EEHAKKKLCKSADYMNLHFKVKWLYNEYVADLPTYKSSVPE--YPAWFEPFVMQWLDENEEVSMDFLRGALERDK----K 770 (1283)
T ss_pred HHHhhhccccCcchhheeeehhhhHHHHHhhchhhhccCCC--chHHHHHHHHHHhccchHHHHHHHHhHhhccc----c
Confidence 9999986 2 43 99999999999999999999998 56999999999999999999999999999999 8
Q ss_pred CC-ccchH---------HHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccc
Q psy11343 881 NG-CATSE---------DLFWKLDALQSFIRDLHWPDQEFNQHLEQRLKLMACDMIESCIMRTESAFQSWLKKGVSFVST 950 (1150)
Q Consensus 881 nG-qqTSE---------DLF~qLnqlqeFIrkLeWPDpef~ahlm~RfaktISkmIeqYadrt~~~F~s~l~Ke~~~~st 950 (1150)
|| ++||| |+|+||||++++|++|+||||++++|||+||++||++||++|+++++++|++||.|++.
T Consensus 771 dgf~qtseha~fs~svvdvftqlnqsfeiikklecpdp~i~ah~mrrfakti~kvllqyadivskdfp~y~~kekl---- 846 (1283)
T KOG1011|consen 771 DGFQQTSEHALFSCSVVDVFTQLNQSFEIIKKLECPDPEIAAHYMRRFAKTINKVLLQYADIVSKDFPKYCHKEKL---- 846 (1283)
T ss_pred cCccccchhhhhcchHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccC----
Confidence 88 89998 99999999999999999999999999999999999999999999999999999999875
Q ss_pred cccccccchhhhhhHHHHhhhhhhhhhccCCccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC----
Q psy11343 951 DYIIHSEMCAMINIIADAKNQSLKLCAVDGIDVHQYHIKIDDLIEKTSANMIQGLISKLVAVLENTLAKLSRYDEG---- 1026 (1150)
Q Consensus 951 D~ilP~e~CimmNniqqlRvQleKlc~~~gG~e~qyh~~id~~Le~~~~~mls~L~~KL~~VLe~vL~KLSRyDEg---- 1026 (1150)
+||+|||+||+||||+|||+.|||.| |+..+.++|..+|.|||+||+++-..+....+.
T Consensus 847 -------pcilmnnvqqlrvqlekmfeamggke----------ld~ea~d~lk~lqvkln~vldels~~f~tsfqphi~e 909 (1283)
T KOG1011|consen 847 -------PCILMNNVQQLRVQLEKMFEAMGGKE----------LDEEAGDVLKELQVKLNSVLDELSAVFVTSFQPHIHE 909 (1283)
T ss_pred -------CeeeeccHHHHHHHHHHHHHHhcchh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHH
Confidence 59999999999999999999999984 999999999999999998887766665543332
Q ss_pred --cchhhhhccc---------------cccCCcchhhhhhHH-HHHhhHHHHHHhhHHHHHHHHH
Q psy11343 1027 --SLIGSILSLT---------------NVSGNGKELGQAYVN-FSRNNMDQIRSKINDELWILNF 1073 (1150)
Q Consensus 1027 --sl~sSiLSlt---------------~v~kPg~dl~~~Yv~-FvR~n~d~Lr~kV~dELw~l~~ 1073 (1150)
..+|.||+.. +|+.|.||+.++.++ |..+|++++.++|++|||++.+
T Consensus 910 ~v~qmg~il~qvkgt~~a~~sva~dad~vl~plmdlldgnlt~fa~~cektvlk~vlkelwkivm 974 (1283)
T KOG1011|consen 910 CVIQMGDILVQVKGTGLAKTSVAQDADAVLEPLMDLLDGNLTLFADQCEKTVLKRVLKELWKIVM 974 (1283)
T ss_pred HHHHHHHHHhhhcccccchhhcccchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2566777652 578999999999985 9999999999999999999876
No 3
>KOG3543|consensus
Probab=100.00 E-value=7.7e-99 Score=845.06 Aligned_cols=374 Identities=41% Similarity=0.611 Sum_probs=331.3
Q ss_pred cCCccchhhHHHHHHHHhhheeeeeeeccccCCCCCCchhHHHhhhhhhHhHHHHHHhhccccccchhHHHHHHhhhcCC
Q psy11343 248 VMDPQDSQEKQEEERKRRIQLYVFVSRCIAYPFNSKQSTDMIRRHSKITRHLLEVIQSRFQVPMLHTSIVFLLQAFLRGD 327 (1150)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~q~~v~v~rc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (1150)
|.++++|.++|||++|++||+|+|++||||||||++||+||+|||+|||||||++|++||+ +||+||
T Consensus 44 e~qe~~k~ereeed~kk~lqmy~fl~rciaypfn~qq~~dmarrq~kv~kqel~~irerf~-------------~fl~ge 110 (1218)
T KOG3543|consen 44 EEQERMKAEREEEDHKKNLQMYMFLARCIAYPFNGQQTGDMARRQMKVNKQELARIRERFT-------------LFLKGE 110 (1218)
T ss_pred hHHHHHHHhhhhHHHhhhhHHHHHHHHHhcccCCCCCccHHHHHHHhhhHHHHHHHHHHHH-------------HHHcCc
Confidence 4445667799999999999999999999999999999999999999999999999999998 999999
Q ss_pred ccccchHHHHhhhhhhhhhhhcchhhhhhhhcCCccchhhHHHHHHhHhhhhcccccccCcchhhhhhhhhhhhhhhhhc
Q psy11343 328 TQIMTDEAFQNAVQSYTDVFLKSDRVLNFVQSGACSLYDFREVFRKNIQKRVRSLPEIDGLSKETVLSSWMAKFDCILKV 407 (1150)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1150)
|||+|||||-|||||||+||||||||.+|||+||||+||||||||+||||||||||+|+||||+|||+|||||||+|||
T Consensus 111 t~i~adeaf~~aiqsy~evflkserv~k~v~agg~s~~d~revfr~~iekrvrslpdieglskdtvl~swlakfdai~k- 189 (1218)
T KOG3543|consen 111 TNIAADEAFTKAIQSYFEVFLKSERVQKVVHAGGFSQHDFREVFRLNIEKRVRSLPDIEGLSKDTVLNSWLAKFDAIIK- 189 (1218)
T ss_pred chhhhhHHHHHHHHHHHHHHHhHHHHHHHHHcCCCccccHHHHHHHHHHHHhccCccccccchhHHHHHHHHHhhhhhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCchHHHhHhhhhHHHhhHHHHHHHHHHHHHHHHhhhhHhHHhhccCchhHHHHHhhhcccc-------cccccc
Q psy11343 408 GEEDLKRPNRALQQALNCELILSKEQLYDMFQQILVIKKFEHQLLFNALQLDSADEQTAAIRRELDN-------LEGGRY 480 (1150)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~el~~-------l~ggk~ 480 (1150)
|+||.+..+.|++.++.+++||+|||||+||||||||||||||++||||||||.|||||+||||+++ ....|-
T Consensus 190 gde~~~~~~ar~~~a~sad~vl~keqlyd~fq~ilgvkkfehqii~na~qldnpdeqaa~irre~~~r~e~~~~~~k~kr 269 (1218)
T KOG3543|consen 190 GDETDQNRNARPQNAMSADAVLGKEQLYDVFQQILGVKKFEHQIIFNALQLDNPDEQAAAIRREFATREEALKDPIKMKR 269 (1218)
T ss_pred CCCCchhhccccchhhhhhhhhcHHHHHHHHHHHhhhhHHHHHHHHHHHhcCChHHHHHHHHHHhhhHHHHhhchHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 111122
Q ss_pred cc-------------------------------------ccccc--------------CccEEEeccCcccchhhhhHHh
Q psy11343 481 FF-------------------------------------NAFKE--------------SESILYACDDENEYHLWVMAMY 509 (1150)
Q Consensus 481 FF-------------------------------------~~vke--------------gD~i~fa~dDE~er~lwVqamy 509 (1150)
|- |..|- ||.-.-.+|-.-.-++-|++|
T Consensus 270 ~~kfv~kdme~lymdevr~sin~li~nlet~pvt~~g~~~~~k~r~s~~s~~~~~~ed~d~~ltksdv~la~smevvvm- 348 (1218)
T KOG3543|consen 270 LTKFVVKDMETLYMDEVRMSINTLIGNLETVPVTTRGATNSLKRRTSSGSLNKGDSEDGDVTLTKSDVSLALSMEVVVM- 348 (1218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccccceecccccchhhhhhcccCCcccCCcccccceeeccceeEEeeeeEEEe-
Confidence 22 22211 233333333333333448889
Q ss_pred hhhcCcccccCCCCCcccccccccccCC--chhhhhc----C-cccccccCCCCcchHHHHH-----------HHhhccc
Q psy11343 510 RATGQSHKPTPLNSNAVKNSTISKLQGD--TDKARKH----G-MEEFISADPSKMEHSSLFK-----------SLQSLTL 571 (1150)
Q Consensus 510 RatGQs~Kpv~p~~~~~~~~tm~~~~g~--tD~a~~~----G-i~dfis~~p~~~dH~~LF~-----------~Lq~~tL 571 (1150)
++|+.|+|.|++|+ ||||++.|.. ||+|+++ | ++||.+.+|.|..+++||+ +|+++.|
T Consensus 349 --evqglksvapnriv--yctmevegeklqtdqaeaskp~wgtqgdfstthplpvvkvklftestgvlaledkelgrvil 424 (1218)
T KOG3543|consen 349 --EVQGLKSVAPNRIV--YCTMEVEGEKLQTDQAEASKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKELGRVIL 424 (1218)
T ss_pred --eeccccccCCCeeE--EEEEEecccccccchhhhcCCCCCcCCCcccCCCCceeEEEEEeecceeEEeechhhCeEEE
Confidence 99999999999999 9999998765 9999987 7 9999999999999999998 8999999
Q ss_pred ccccCCCCCCCCcC-------CcchhHHHHHHHhhccccchhhhhhchHHH----hhccCCCcccchhHHHHHHHHhhcc
Q psy11343 572 EYRLNDPYCSMGWY-------SPGQLFVLDEYTARYGVRGCYRHLILLDDL----LDRSEKNTMIDPTLIHCSFAFCSSH 640 (1150)
Q Consensus 572 ~~rlnD~~~slGwF-------sp~qqeILDEfaaRYGVr~iyRHfscLs~l----l~~~~~G~~IdpTLL~ns~AFcA~h 640 (1150)
+|++|.+.+ .+|+ |+.|.--+ ..|.|..-..-..|.+||... +.+|.+...+...+-+|.||.|.-.
T Consensus 425 ~ptpns~ks-~ewh~mtvpknsqdqdlki-klavrmdkp~nmkhsgylyaig~nvwkrwkkrffvlvqvsqytfamcsyr 502 (1218)
T KOG3543|consen 425 QPTPNSAKS-PEWHTMTVPKNSQDQDLKI-KLAVRMDKPPNMKHSGYLYAIGRNVWKRWKKRFFVLVQVSQYTFAMCSYR 502 (1218)
T ss_pred ecCCCCcCC-ccceeeecCCCCcCccceE-EEEEeccCCCccccceeehhhhhHHHHHhHhhEEEEEEhhhhhhHhhhhh
Confidence 999999998 8997 55666444 677777777777799998764 8889899888899999999999876
Q ss_pred cc
Q psy11343 641 VL 642 (1150)
Q Consensus 641 v~ 642 (1150)
..
T Consensus 503 ek 504 (1218)
T KOG3543|consen 503 EK 504 (1218)
T ss_pred hc
Confidence 43
No 4
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=100.00 E-value=3.5e-55 Score=411.09 Aligned_cols=64 Identities=73% Similarity=1.418 Sum_probs=63.0
Q ss_pred CCcccceeeeechhHHHhhhceeEEEEEeeceehhhccccccCCCCccccccccceeeeccCCc
Q psy11343 151 NMKHCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVDYIEPAS 214 (1150)
Q Consensus 151 n~k~~gy~~~~g~~~~kkwk~r~~~lvqvsqytfa~cs~~e~ks~p~e~~ql~g~tvdy~~~~~ 214 (1150)
|||||||||+.|++.||+||||||||+||||||||||||+||||+|+|||||||||||||+|.+
T Consensus 1 nmk~sGyL~k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~ekks~P~e~~qldGyTvDy~~~~~ 64 (117)
T cd01234 1 NMKHCGYLYAIGKNVWKKWKKRFFVLVQVSQYTFAMCSYREKKAEPTEFIQLDGYTVDYMPESD 64 (117)
T ss_pred CCceeEEEEeccchhhhhhheeEEEEEchhHHHHHHHhhhhhcCCchhheeecceEEeccCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999976
No 5
>PF06292 DUF1041: Domain of Unknown Function (DUF1041); InterPro: IPR010439 This entry represents Calcium-dependent secretion activators that are involved in the exocytosis of vesicles filled with neurotransmitters and neuropeptides. They also may specifically mediate the Ca2+-dependent exocytosis of large dense-core vesicles (DCVs) and other dense-core vesicles by acting as a PtdIns(4,5)P2-binding protein that acts at prefusion step following ATP-dependent priming and participates in DCVs-membrane fusion []. However, it probably also participates in small clear synaptic vesicles (SVs) exocytosis and it is unclear whether its function is related to Ca2+ triggering []. This protein is often found in tandem repeats and co-occur with C2 domains IPR000008 from INTERPRO, Protein kinase C, phorbol ester/diacylglycerol binding regions IPR002219 from INTERPRO and PH domains IPR001849 from INTERPRO.
Probab=99.95 E-value=3.8e-28 Score=230.24 Aligned_cols=94 Identities=53% Similarity=0.810 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhc--------cccccCCCCCCCchhHHHHHHHHHHHHHhhcchhhhhhhhhhhhH--
Q psy11343 718 EVIKKCLETAALINYSKLSSEARVE--------EDLTAEGGVSPSKKLEDLIHLGELCVDLLQQNEEHYAEAFAWYSD-- 787 (1150)
Q Consensus 718 ecVKaCLesAa~~nYsr~~e~a~~E--------~~~~~e~~~p~~K~Ldfw~kLieLcVsVIeEDke~Yap~fnqFPq-- 787 (1150)
.+||.||+.+++.||+++++++..+ ++...++++|+.|+||||+|||+|||+||+||++||+|++|+||+
T Consensus 2 ~VVr~Cle~aa~~nY~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~Le~w~~L~eL~v~vleed~e~y~~vln~F~~~~ 81 (106)
T PF06292_consen 2 NVVRKCLEAAALSNYQRIFENCKEEYNRQFQQKEDVGPEEQGPPIKKLEFWIRLIELCVSVLEEDKEHYAPVLNQFPWEL 81 (106)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccCccCCCChhHhHHHHHHHHHHHHHHHHhhhhhhhhHhhhchhhh
Confidence 4556666666667788888877654 222235789999999999999999999999999999965555555
Q ss_pred -HHHHHHHHHHHHhHHHHHHHHhcC
Q psy11343 788 -LLVEHAEIFWSLFAVDMDQVLAEQ 811 (1150)
Q Consensus 788 -eL~isAEvfWsLFa~DMd~ALEeh 811 (1150)
++++|||+||+||++|||+||++|
T Consensus 82 ~l~~~hAE~fWsLfa~Dm~~aLeeq 106 (106)
T PF06292_consen 82 DLGVEHAEIFWSLFAVDMDAALEEQ 106 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 559999999999999999999997
No 6
>KOG1328|consensus
Probab=99.48 E-value=1.4e-09 Score=128.25 Aligned_cols=623 Identities=14% Similarity=0.162 Sum_probs=352.5
Q ss_pred hccccccccccccccccc-CccEEEeccCcccchhhhh-----------------------HHhhhhcCcccccCCCCCc
Q psy11343 470 RELDNLEGGRYFFNAFKE-SESILYACDDENEYHLWVM-----------------------AMYRATGQSHKPTPLNSNA 525 (1150)
Q Consensus 470 ~el~~l~ggk~FF~~vke-gD~i~fa~dDE~er~lwVq-----------------------amyRatGQs~Kpv~p~~~~ 525 (1150)
.-|||.|++||-|+-=.- .|..-+..||-||.. .|+ .--||-||.+--==-..+.
T Consensus 186 ~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~-sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciN 264 (1103)
T KOG1328|consen 186 KTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEE-SVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCIN 264 (1103)
T ss_pred ccCCcchhhheeeehhccccceeeeecccCCccH-HHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccc
Confidence 348999999999986443 678888899888755 321 1223334411100000001
Q ss_pred cccccccc--------ccCCchhhhhcC-cc--ccccc-CCC----C------cchHHHHHHHhhcccc-cccCCCCCCC
Q psy11343 526 VKNSTISK--------LQGDTDKARKHG-ME--EFISA-DPS----K------MEHSSLFKSLQSLTLE-YRLNDPYCSM 582 (1150)
Q Consensus 526 ~~~~tm~~--------~~g~tD~a~~~G-i~--dfis~-~p~----~------~dH~~LF~~Lq~~tL~-~rlnD~~~sl 582 (1150)
...+++.+ ++-+.|+++++| +. .+.++ .-. . ..|..|-..+-...+. +.+|..++ .
T Consensus 265 ipl~EiP~~Gld~WFkLepRS~~S~VqG~~~LklwLsT~e~~~a~se~~~~~~~~hielL~~f~~~E~~~~ep~s~~W-~ 343 (1103)
T KOG1328|consen 265 IPLAEIPPDGLDQWFKLEPRSDKSKVQGQVKLKLWLSTKEEGRAGSEDETLDVKEHIELLRQFALYEIRQTEPPSRFW-D 343 (1103)
T ss_pred cchhcCCcchHHHHhccCcccccccccceEEEEEEEeeeccccccCccchhhHHHHHHHHHHHHHHHhhccCCCCccc-c
Confidence 11122222 334477888888 33 33332 111 1 1244444422222222 23334444 5
Q ss_pred CcCCcchhHHHHHHHhhccccchhhhhhc---hHHHhhccCCCcccchhHHHHHHHHhhcccccCCCCccccccChhhHh
Q psy11343 583 GWYSPGQLFVLDEYTARYGVRGCYRHLIL---LDDLLDRSEKNTMIDPTLIHCSFAFCSSHVLGNRPEGVVGTVTQEEKN 659 (1150)
Q Consensus 583 GwFsp~qqeILDEfaaRYGVr~iyRHfsc---Ls~ll~~~~~G~~IdpTLL~ns~AFcA~hv~gNapd~fvgtvTnfgKE 659 (1150)
|=++..+..||---|+.-..... |++. +...-+ -...-+|+.+|+....=..-+- |-+.. .+-++-+
T Consensus 344 G~lp~pA~tIL~qha~QsdLsdl--hlAm~rw~a~~~~--~~s~~ld~s~L~~lL~di~~~W--~~~~q----L~~e~E~ 413 (1103)
T KOG1328|consen 344 GVLPEPAMTILRQHAIQSDLSDL--HLAMCRWLAFHSM--IHSIDLDFSLLYKLLQDIIDKW--QPLTQ----LDKEEED 413 (1103)
T ss_pred CCCCchHHHHHHHHHhccCCcHH--HHHHHHHHHHHHh--ccCCCCCHHHHHHHHHHHHHhh--cCccc----CCHHHHH
Confidence 77899999999766543333321 5542 222222 1223466666665543222221 11110 1111111
Q ss_pred hHHHHHHHHHHHHhhhccccccccCCCCchhh--hhhHHHHHHHhh-hcccCCCCC-hHHHHHHHHHHHHHHHHHHHHhh
Q psy11343 660 RFNVIKERLKELLINQITNFRYAFPFGRPEGI--LKSTLSLLERVL-MKDSVTPVQ-PEEVREVIKKCLETAALINYSKL 735 (1150)
Q Consensus 660 rFvkLldqLhn~LriqLS~YR~~FPfsrPE~a--LKsTVdLLtsVr-MKv~~~p~p-pevVrecVKaCLesAa~~nYsr~ 735 (1150)
.-..-..-....=-.+|-..|+.||+++|--. |.+.+.+|--.+ |-...---| -..++.-|-+-|...+-+-|.|+
T Consensus 414 ~LaDs~s~F~e~~l~~~r~hRd~Fpa~n~~s~~rle~LlkClg~L~~~~~~~~~cPf~~~~~~~~~~al~kg~~~w~dr~ 493 (1103)
T KOG1328|consen 414 MLADSFSSFDEYCLRMMREHRDKFPASNRNSGERLESLLKCLGALRESPFYQKYCPFKRPFHAHLESALVKGAEDWIDRS 493 (1103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHhcCcchHhhCCCCccchHHHHHHHHhhhHHHHHHH
Confidence 11111111111112234456899999977554 666666665443 111000000 02244445555666777788888
Q ss_pred hhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHhhcchhhhhhhhhh----------hhHHHHHHHHHHHHHhHH---
Q psy11343 736 SSEARVEEDLTAEGGVSPSKKLEDLIHLGELCVDLLQQNEEHYAEAFAW----------YSDLLVEHAEIFWSLFAV--- 802 (1150)
Q Consensus 736 ~e~a~~E~~~~~e~~~p~~K~Ldfw~kLieLcVsVIeEDke~Yap~fnq----------FPqeL~isAEvfWsLFa~--- 802 (1150)
.+...-- ++.+ ..-++.-++.-++---.||+..|-. |-|.=.+-+|..|++...
T Consensus 494 ~~~~q~~---------~~p~----l~~~~~~i~~d~q~~~~~Yaalf~~v~~idyf~lt~~q~drlv~Ee~~s~~~~~~~ 560 (1103)
T KOG1328|consen 494 IESVQDP---------DPPK----LLLQLLNIVNDQQSRFLHYAALFREVARIDYFQLTLNQFDRLVTEELTSELMSEKK 560 (1103)
T ss_pred HhccCCC---------CCch----hHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeeeHHHHHHHHHHHHHHHHhchhh
Confidence 7542111 1111 2223344455555556677764321 222227778999999876
Q ss_pred -HHHHHHhcCCCCC----CCCccHHHHHHHHhhc---cccccCCccc-cchhhhhHHHHHHHHhccchhHHHHHHHhHhc
Q psy11343 803 -DMDQVLAEQPSDT----WDSFPLFQILNEYLRA---DENLKNGRFH-QHLREYFAPLVVRYVDLMESSIAQSIHKGFEK 873 (1150)
Q Consensus 803 -DMd~ALEeh~~d~----~DsFkVkwLyNeYvr~---lp~lKn~vfe-~~L~~wFePfV~rWLDenEess~qfL~~AfEr 873 (1150)
|++.-+...+.+. .+-|.|+-.+-+|++- .++-...+.. -..-+||.|-|.+|+...-+....-||+|..=
T Consensus 561 ~~~~sq~~ls~~~~~pv~~~lfeL~l~l~~f~~l~~~~~a~~~r~lals~~ha~F~p~ik~w~~V~k~kAl~Rv~~a~~m 640 (1103)
T KOG1328|consen 561 MDLKSQMRLSAAQDPPVEDDLFELMLILMAFVELRNYRLANRVRVLALSEWHAIFNPGIKKWLEVAKEKALARVHLACQM 640 (1103)
T ss_pred hhhhhhhhcccccCCCccccHHHHHHHHHHHHHHHhhcccCCCcchhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444444444433 2448877777666532 2221111100 01227999999999999999999999999999
Q ss_pred ccccccCC---CccchHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhcCcccc
Q psy11343 874 EKWEIKGN---GCATSEDLFWKLDALQSFIRDLHWPDQEFNQHLEQRLKLMACDMIESCIMRTE--SAFQSWLKKGVSFV 948 (1150)
Q Consensus 874 DKwep~kn---GqqTSEDLF~qLnqlqeFIrkLeWPDpef~ahlm~RfaktISkmIeqYadrt~--~~F~s~l~Ke~~~~ 948 (1150)
|.-.|... .++|+.|+=.-|.+.++|-..|+||||..+--|.+-+--.+|....-|++.+. +.|-.++.-.-.
T Consensus 641 D~~~~~~~~~RhSSS~~d~~~~l~~i~efW~rl~wpD~~~ai~~~~QL~dvVCea~~~Yt~li~sa~~dtq~~~a~~p-- 718 (1103)
T KOG1328|consen 641 DMPISTSSDMRHSSSHIDICHILEQITEFWERLDWPDAGLAIEYTRQLVDVVCEAVTVYTQLIISAEGDTQELQAFIP-- 718 (1103)
T ss_pred CCccccchhhccccchhhHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcCh--
Confidence 99776554 27888899999999999999999999999999999999999999999999765 445455443311
Q ss_pred cccccccccchhhhhhHHHHhhhh---hhhhhcc---CCccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11343 949 STDYIIHSEMCAMINIIADAKNQS---LKLCAVD---GIDVHQYHIKIDDLIEKTSANMIQGLISKLVAVLENTLAKLSR 1022 (1150)
Q Consensus 949 stD~ilP~e~CimmNniqqlRvQl---eKlc~~~---gG~e~qyh~~id~~Le~~~~~mls~L~~KL~~VLe~vL~KLSR 1022 (1150)
+.+.-..|+-+||+-+-|.-+ +|+-+-. .|.+|-..+.|+..+|++..+|.+++ +-++++|+-
T Consensus 719 ---~~~s~~lCv~iNNvE~VRrsl~~~~k~~~~p~~~~~~~~~l~~~~~n~les~~~~~~~e~--------~ri~~~Lt~ 787 (1103)
T KOG1328|consen 719 ---SQLSHLLCVAINNVEQVRRSLNITEKLHMDPRSRLNGNHMLKSEIENRLESCESNICSEI--------DRIVGLLTE 787 (1103)
T ss_pred ---HHHHHHHHHHHccHHHHHHHHhHHhhhccCcccccCccccCchHHHHHHHHHHHHHHHHH--------HHHHHHhhH
Confidence 223334799999999999876 5554322 23456777777777777777665543 445555554
Q ss_pred cCCCcchhhhhccc---------cccCCcchhhhhhHHHHHhhH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11343 1023 YDEGSLIGSILSLT---------NVSGNGKELGQAYVNFSRNNM-DQIRSKINDELWILNFFELWYTAQMKVLCNWLSER 1092 (1150)
Q Consensus 1023 yDEgsl~sSiLSlt---------~v~kPg~dl~~~Yv~FvR~n~-d~Lr~kV~dELw~l~~fe~wy~~~~~~i~~WLteR 1092 (1150)
-+-+.+-.-++-++ +.++|.++..|--+.-+-.|+ ..=-.||+.=+|.+. +++|.+=+.+.
T Consensus 788 ~m~~~~~K~vfHlawSPds~~~~~a~~PL~~yLD~~La~ln~~Ll~~Nf~Rvl~a~w~~v---------l~~l~~~~g~n 858 (1103)
T KOG1328|consen 788 RMLPQMKKHVFHLAWSPDSQLVEDALKPLTDYLDIELASLNKNLLHRNFLRVLSAQWSIV---------LKLLRECVGEN 858 (1103)
T ss_pred HhhHHHHHHHHheecCccccchhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---------HHHHHHHhccc
Confidence 44444333333332 456888887775433222221 111223444445443 45556678888
Q ss_pred hcccchhhhh--hhHHHHHHhhccccccccccccccccccHHHHHHhhhhh
Q psy11343 1093 VDNSLHVYQC--NCLSHCVKKMYSDFELQGVMEDKLNSKTYQTVSQRMQTE 1141 (1150)
Q Consensus 1093 ~d~~Lh~yQl--~~L~~ivKk~y~df~lqgv~~~~l~~~~y~tv~~r~~~e 1141 (1150)
-|..-|-|-. .+|--+| ..|. =|=||+.-+-|.+..|-.+.+||+.-
T Consensus 859 ~d~~~~Fy~Rl~eal~~Lv-~FFH-AeGqGL~le~L~t~~~~rl~~~L~lh 907 (1103)
T KOG1328|consen 859 VDMEPAFYHRLFEALHVLV-EFFH-AEGQGLSLEALDTNPEHRLVKILSLH 907 (1103)
T ss_pred CCCChHHHHHHHHHHHHHH-HHHh-ccCCCcchHhhccCcHHHHHHHHHhc
Confidence 8888887752 2222222 3333 27799999999999999999999864
No 7
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=99.41 E-value=7.1e-11 Score=141.21 Aligned_cols=398 Identities=15% Similarity=0.203 Sum_probs=266.4
Q ss_pred cCCCCcchHHHHHHHhhcccccccCCCCCCCCcCCcch--hHHHHHHHhhccccchhhhhhchHHHhhcc-CCCcccchh
Q psy11343 552 ADPSKMEHSSLFKSLQSLTLEYRLNDPYCSMGWYSPGQ--LFVLDEYTARYGVRGCYRHLILLDDLLDRS-EKNTMIDPT 628 (1150)
Q Consensus 552 ~~p~~~dH~~LF~~Lq~~tL~~rlnD~~~slGwFsp~q--qeILDEfaaRYGVr~iyRHfscLs~ll~~~-~~G~~IdpT 628 (1150)
++.++ .-.+||..|-..+-+. .|... .-++.. .++|.......||-..-.+.|+.+-+.... ..| ++.
T Consensus 210 adgyp-lN~~LYe~LL~~~FD~--~de~~---vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tg---e~~ 280 (677)
T PF05664_consen 210 ADGYP-LNVRLYEKLLFSVFDI--LDEGQ---VIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATG---EPD 280 (677)
T ss_pred ccCCC-ccHHHHHHHHHHHhcc--cccch---HHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcC---CHH
Confidence 55666 3478999887764443 23222 112211 245556788888887777888888876543 455 899
Q ss_pred HHHHHHHHhhccc-cc--CCCCc-----cccccChhhHhhHHHHHHHHHHHHhhhccccccccCCCCchhhhhhHHHHHH
Q psy11343 629 LIHCSFAFCSSHV-LG--NRPEG-----VVGTVTQEEKNRFNVIKERLKELLINQITNFRYAFPFGRPEGILKSTLSLLE 700 (1150)
Q Consensus 629 LL~ns~AFcA~hv-~g--Napd~-----fvgtvTnfgKErFvkLldqLhn~LriqLS~YR~~FPfsrPE~aLKsTVdLLt 700 (1150)
||..+...-.--. .. +..+. ++.++++..-.-...++.-++.+.++.|..|-.+|+.+.-. .....|+|.=
T Consensus 281 LL~~a~~~L~ev~~d~~~~~~~~~y~~sl~~~~~~~~l~ll~s~L~si~~W~ekrL~dYH~~f~~~~~~-~me~llsl~~ 359 (677)
T PF05664_consen 281 LLKAAIQQLQEVAKDAKRATKDPLYLKSLRCSVETSDLSLLSSVLSSIQGWAEKRLLDYHDHFSEGNIG-VMEGLLSLAV 359 (677)
T ss_pred HHHHHHHHHHHHHHhccccccchhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCcchH-HHHHHHHHHH
Confidence 9988887765321 11 11111 11223344444667788899999999999999999877653 3333333332
Q ss_pred H---hhhcccC-------CCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHH
Q psy11343 701 R---VLMKDSV-------TPVQPEEVREVIKKCLETAALINYSKLSSEARVEEDLTAEGGVSPSKKLEDLIHLGELCVDL 770 (1150)
Q Consensus 701 s---VrMKv~~-------~p~ppevVrecVKaCLesAa~~nYsr~~e~a~~E~~~~~e~~~p~~K~Ldfw~kLieLcVsV 770 (1150)
. |+-.+.. ...+..-|...|+.-+++| |.+..+... ..+.....+.+..||.=+-++
T Consensus 360 ~a~~il~ed~~~~~~~~~~~~~~~~ie~YIrsSi~~A----f~~~~~~~~---------~~~~~~~~~~L~~LA~ei~~l 426 (677)
T PF05664_consen 360 SAAKILGEDVSREYRRKRSKVARSRIESYIRSSIKAA----FARMASSVD---------SRSDSEPSHVLAQLAKEIKEL 426 (677)
T ss_pred HHHHHHhhchhHHHHhhhccchHHHHHHHHHHHHHHH----HHhhhhhhh---------hcccccchHHHHHHHHHHHHH
Confidence 1 2111111 0122334555555555555 444332211 112334577788999999999
Q ss_pred hhcchhhhhhhhhhh-hHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCccHH-------HHHHHHhhcc-----ccccC
Q psy11343 771 LQQNEEHYAEAFAWY-SDLLVEHAEIFWSLFAVDMDQVLAEQPSDTWDSFPLF-------QILNEYLRAD-----ENLKN 837 (1150)
Q Consensus 771 IeEDke~Yap~fnqF-PqeL~isAEvfWsLFa~DMd~ALEeh~~d~~DsFkVk-------wLyNeYvr~l-----p~lKn 837 (1150)
..-+.+.|+|+|..| |....++|..+=++|..|++..|+.-..-+-|.+.|. ..+..++..+ .++-.
T Consensus 427 a~~e~~~FsPiLk~whP~a~~VAa~~LH~~Yg~~Lk~~L~~~~~LT~d~v~VL~aA~~LEk~Lvq~~~~~~edggk~~~r 506 (677)
T PF05664_consen 427 AKKEKEVFSPILKRWHPNAAGVAAATLHSCYGNELKQFLSGVTHLTPDVVEVLQAADKLEKALVQMVSVDCEDGGKSLIR 506 (677)
T ss_pred HHHhHHhcCchhcccCchHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 999999999999875 8888999999999999999999998765554443332 2222222111 11112
Q ss_pred CccccchhhhhHHHHHHHHhccchhHHHHHHHhHhcccccccCCC---ccchHHHHHHHHHHHHhhhcCCCCCHHHHHHH
Q psy11343 838 GRFHQHLREYFAPLVVRYVDLMESSIAQSIHKGFEKEKWEIKGNG---CATSEDLFWKLDALQSFIRDLHWPDQEFNQHL 914 (1150)
Q Consensus 838 ~vfe~~L~~wFePfV~rWLDenEess~qfL~~AfErDKwep~knG---qqTSEDLF~qLnqlqeFIrkLeWPDpef~ahl 914 (1150)
-.|.|++-..+.+||.+|+++..+...+|+++|++.|+|.|..+. ++|+.|||.-.++..+-+-+|.||.+ ..+
T Consensus 507 em~Py~vE~~i~~lv~~Wi~~~~~~l~ewv~ra~~qE~W~P~S~~e~hs~SvVEvfri~~eTvd~ff~L~~~~~---~~~ 583 (677)
T PF05664_consen 507 EMPPYEVESLISNLVKRWIQEQLERLNEWVDRAIKQEKWNPRSKEERHSPSVVEVFRIFNETVDQFFQLPWPMH---ADF 583 (677)
T ss_pred CCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCcchHHHHHHHHHHHHHHHHcCCCCCc---hHH
Confidence 235678889999999999999999999999999999999999863 78888999999999999999999977 468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------------HhhhcCcc-ccccccccc--------ccchhhhh
Q psy11343 915 EQRLKLMACDMIESCIMRTESAFQ----------------------SWLKKGVS-FVSTDYIIH--------SEMCAMIN 963 (1150)
Q Consensus 915 m~RfaktISkmIeqYadrt~~~F~----------------------s~l~Ke~~-~~stD~ilP--------~e~CimmN 963 (1150)
++-|...+.+.+..|+..+...|. ...+|... -...+.+-+ ++.|+=+|
T Consensus 584 l~~L~~gld~~lq~Y~~~v~~~~gsk~~liP~~P~LTR~~~~sk~~~~~Kk~~~~~~~~~~~~~~~~~~~~~~~lcVrLN 663 (677)
T PF05664_consen 584 LQALSKGLDKALQRYCEKVEQSCGSKQSLIPPLPPLTRCKKDSKFKKLWKKKWKSSTNPDERFSSKINSQFTPRLCVRLN 663 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCCCCchhhhhhhhhhHHHHHHHHhcCccccccccccCcccCccCceeeeec
Confidence 999999999999999999954442 11122111 001122211 36788999
Q ss_pred hHHHHhhhhhhh
Q psy11343 964 IIADAKNQSLKL 975 (1150)
Q Consensus 964 niqqlRvQleKl 975 (1150)
|+..++.|+.+|
T Consensus 664 tL~yil~qL~~L 675 (677)
T PF05664_consen 664 TLEYILSQLDKL 675 (677)
T ss_pred HHHHHHHHHHhh
Confidence 999999988876
No 8
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=96.98 E-value=0.0021 Score=55.04 Aligned_cols=78 Identities=22% Similarity=0.425 Sum_probs=65.6
Q ss_pred EEEEEEeeccccc--cCCCCeEEEEEEeeCCcc--cccccccc-cCCcccccCccc-cccccceeEEEEeeccCCccccc
Q psy11343 30 LEVIVMEVKGLKS--LAPNRIVYCTMEVEGGEK--LQTDQAEA-SKPMWDTQADFS-TNQPLPAIKVKLFTENPGMLALE 103 (1150)
Q Consensus 30 lev~v~ev~~l~~--~~~~~~vyctme~eg~~k--l~td~~ea-~~p~w~tq~df~-t~~plp~~kvkl~~e~~g~l~~e 103 (1150)
|+|.|++.+||.. .....-.||.+.+.|.+. ..|..... .-|.|+..-.|. ...++..+.|.|+..+...-
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~--- 77 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGK--- 77 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSS---
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCC---
Confidence 7899999999998 344567999999999876 78877665 689999999999 88888999999998876543
Q ss_pred ccccceE
Q psy11343 104 DKELGKV 110 (1150)
Q Consensus 104 dkelg~v 110 (1150)
|+-||++
T Consensus 78 ~~~iG~~ 84 (85)
T PF00168_consen 78 DELIGEV 84 (85)
T ss_dssp EEEEEEE
T ss_pred CCEEEEE
Confidence 7888876
No 9
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=96.92 E-value=0.0078 Score=58.18 Aligned_cols=99 Identities=18% Similarity=0.352 Sum_probs=70.9
Q ss_pred EEEEEEEeeccccccCCCCeEEEEEEeeCCcccccccccccCCcccccCccccccc-cceeEEEEeeccCCccccccccc
Q psy11343 29 QLEVIVMEVKGLKSLAPNRIVYCTMEVEGGEKLQTDQAEASKPMWDTQADFSTNQP-LPAIKVKLFTENPGMLALEDKEL 107 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~~vyctme~eg~~kl~td~~ea~~p~w~tq~df~t~~p-lp~~kvkl~~e~~g~l~~edkel 107 (1150)
.|.|.|+|.+||+....- --||++.+.|..+.+|.-....-|.|+..-.|--..| +..+.|.++.+... ..|..+
T Consensus 5 ~L~V~Vi~A~~L~~~~~~-DPYv~v~l~~~~~~kT~v~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~---~~d~~i 80 (126)
T cd08400 5 SLQLNVLEAHKLPVKHVP-HPYCVISLNEVKVARTKVREGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKR---SKDSEI 80 (126)
T ss_pred EEEEEEEEeeCCCCCCCC-CeeEEEEECCEeEEEeecCCCCCCccCCEEEEecCCCCcCEEEEEEEECCCC---CCCCeE
Confidence 489999999999875322 4699999965455678765668899999877753222 24577888876542 468899
Q ss_pred ceEEeecC--CCCCCCccccccccCC
Q psy11343 108 GKVILRPT--PLSSKAPEWHKMLVPK 131 (1150)
Q Consensus 108 g~v~~~p~--~~~~~~~~~~~m~~~k 131 (1150)
|+|.+.-. ..+.....|+.+...+
T Consensus 81 G~v~i~l~~l~~~~~~~~W~~L~~~~ 106 (126)
T cd08400 81 AEVTVQLSKLQNGQETDEWYPLSSAS 106 (126)
T ss_pred EEEEEEHhHccCCCcccEeEEcccCC
Confidence 99998633 3355567899997654
No 10
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=96.82 E-value=0.0045 Score=53.45 Aligned_cols=82 Identities=20% Similarity=0.455 Sum_probs=69.8
Q ss_pred EEEEEEEeeccccccCC--CCeEEEEEEeeCC--ccccccccccc-CCcccccCccccccc-cceeEEEEeeccCCcccc
Q psy11343 29 QLEVIVMEVKGLKSLAP--NRIVYCTMEVEGG--EKLQTDQAEAS-KPMWDTQADFSTNQP-LPAIKVKLFTENPGMLAL 102 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~--~~~vyctme~eg~--~kl~td~~ea~-~p~w~tq~df~t~~p-lp~~kvkl~~e~~g~l~~ 102 (1150)
+|.|.|++.+||..... ..-.||.+++.+. ...+|.....+ -|.|+..-+|.-..+ ...++|.+|.+....
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~--- 77 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG--- 77 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc---
Confidence 36789999999988854 5669999999877 57888888776 999999999998888 899999999998764
Q ss_pred cccccceEEee
Q psy11343 103 EDKELGKVILR 113 (1150)
Q Consensus 103 edkelg~v~~~ 113 (1150)
.+..+|.+.+.
T Consensus 78 ~~~~~G~~~~~ 88 (101)
T smart00239 78 RDDFIGQVTIP 88 (101)
T ss_pred CCceeEEEEEE
Confidence 78899998875
No 11
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=96.78 E-value=0.009 Score=55.58 Aligned_cols=99 Identities=24% Similarity=0.371 Sum_probs=70.1
Q ss_pred EEEEEEEeeccccccCCCCeEEEEEEeeCCcccccccccccCCcccccCccccccc-cce--eEEEEeeccCCccccccc
Q psy11343 29 QLEVIVMEVKGLKSLAPNRIVYCTMEVEGGEKLQTDQAEASKPMWDTQADFSTNQP-LPA--IKVKLFTENPGMLALEDK 105 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~~vyctme~eg~~kl~td~~ea~~p~w~tq~df~t~~p-lp~--~kvkl~~e~~g~l~~edk 105 (1150)
+|.|.|++.+||+.. ..--.||.+.+.|..+-+|......-|.|+.+..|.-... ++. +.|.++... ++ ..|.
T Consensus 1 ~L~v~vi~a~~l~~~-~~~dpyv~v~~~~~~~~kT~~~~~~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~-~~--~~~~ 76 (117)
T cd08383 1 SLRLRILEAKNLPSK-GTRDPYCTVSLDQVEVARTKTVEKLNPFWGEEFVFDDPPPDVTFFTLSFYNKDKR-SK--DRDI 76 (117)
T ss_pred CeEEEEEEecCCCcC-CCCCceEEEEECCEEeEecceEECCCCcccceEEEecCCccccEEEEEEEEEecc-cC--CCee
Confidence 378999999999876 3345799999965444577666558899999988865542 243 344444433 22 3456
Q ss_pred ccceEEeecCCCCCCCccccccccCC
Q psy11343 106 ELGKVILRPTPLSSKAPEWHKMLVPK 131 (1150)
Q Consensus 106 elg~v~~~p~~~~~~~~~~~~m~~~k 131 (1150)
=+|+|.|.....+.....|+.|...+
T Consensus 77 ~~g~v~l~~~~~~~~~~~w~~L~~~~ 102 (117)
T cd08383 77 VIGKVALSKLDLGQGKDEWFPLTPVD 102 (117)
T ss_pred EEEEEEecCcCCCCcceeEEECccCC
Confidence 68999998888888889999985433
No 12
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.71 E-value=0.0059 Score=56.83 Aligned_cols=92 Identities=16% Similarity=0.244 Sum_probs=71.9
Q ss_pred EEEEEEeeccccccCC--CCeEEEEEEeeCCcccccccccc-cCCcccccCccccccc-cceeEEEEeeccCCccccccc
Q psy11343 30 LEVIVMEVKGLKSLAP--NRIVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQP-LPAIKVKLFTENPGMLALEDK 105 (1150)
Q Consensus 30 lev~v~ev~~l~~~~~--~~~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~p-lp~~kvkl~~e~~g~l~~edk 105 (1150)
|.|.|++.+||..... .---||++.+.| .+..|.-.+. ..|.|+..-.|.-.+| ...+.|.++.+.. |+
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~------~~ 74 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK-TTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT------GK 74 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECC-EEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC------CC
Confidence 6789999999976543 334699999964 7888877665 6899999999998886 6679999998876 78
Q ss_pred ccceEEeec----CCCCCCCccccccc
Q psy11343 106 ELGKVILRP----TPLSSKAPEWHKML 128 (1150)
Q Consensus 106 elg~v~~~p----~~~~~~~~~~~~m~ 128 (1150)
.+|++.+.- .......++||.+.
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEecC
Confidence 999999962 22234678999864
No 13
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=96.70 E-value=0.012 Score=56.71 Aligned_cols=111 Identities=23% Similarity=0.334 Sum_probs=83.1
Q ss_pred EEEEEEEeeccccccCCC--CeEEEEEEeeCCccccccccccc-CCcccccCccccccccceeEEEEeeccCCccccccc
Q psy11343 29 QLEVIVMEVKGLKSLAPN--RIVYCTMEVEGGEKLQTDQAEAS-KPMWDTQADFSTNQPLPAIKVKLFTENPGMLALEDK 105 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~--~~vyctme~eg~~kl~td~~ea~-~p~w~tq~df~t~~plp~~kvkl~~e~~g~l~~edk 105 (1150)
-|+|.|++.+||+....+ ---||.+.+ ||++..|.....+ .|.|++.-.|....+--.++|.+|-... + .|.
T Consensus 4 ~~~V~v~~A~~L~~~d~~g~~dPyv~v~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~--~--~d~ 78 (126)
T cd04046 4 VTQVHVHSAEGLSKQDSGGGADPYVIIKC-EGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNL--L--CDE 78 (126)
T ss_pred EEEEEEEeCcCCCCCCCCCCcCccEEEEE-CCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCC--C--CCC
Confidence 378999999999875432 236999986 4678899888764 6999999999777765679999998653 3 378
Q ss_pred ccceEEeecCCCCCCCcccccccc----CCCCCCcCceEEEEE
Q psy11343 106 ELGKVILRPTPLSSKAPEWHKMLV----PKNCADQDLKIKIAC 144 (1150)
Q Consensus 106 elg~v~~~p~~~~~~~~~~~~m~~----~k~~~d~~l~i~~~~ 144 (1150)
-||++.+...+.....+.|+.+.. +++..-+.|.|++..
T Consensus 79 ~lG~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~ 121 (126)
T cd04046 79 FLGQATLSADPNDSQTLRTLPLRKRGRDAAGEVPGTISVKVTS 121 (126)
T ss_pred ceEEEEEecccCCCcCceEEEcccCCCCCCCCCCCEEEEEEEE
Confidence 999999988777788888888753 344444556666654
No 14
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=96.66 E-value=0.0071 Score=57.41 Aligned_cols=107 Identities=21% Similarity=0.330 Sum_probs=76.9
Q ss_pred EEEEEEEeeccccccCCC--CeEEEEEEeeCCccccccccc--ccCCcccccCccccccc-----cceeEEEEeeccCCc
Q psy11343 29 QLEVIVMEVKGLKSLAPN--RIVYCTMEVEGGEKLQTDQAE--ASKPMWDTQADFSTNQP-----LPAIKVKLFTENPGM 99 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~--~~vyctme~eg~~kl~td~~e--a~~p~w~tq~df~t~~p-----lp~~kvkl~~e~~g~ 99 (1150)
+|+|.|++.+||+..... --.||++.+.|-.+.+|.-+. ...|.|+..--|.-..+ .-.++|.+|.....
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~- 79 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPS- 79 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCC-
Confidence 589999999999977643 346999999764788887764 36899999988887776 46788999987663
Q ss_pred ccccccccceEEeecCCC-------CCCCccccccccCCCCCCcCc
Q psy11343 100 LALEDKELGKVILRPTPL-------SSKAPEWHKMLVPKNCADQDL 138 (1150)
Q Consensus 100 l~~edkelg~v~~~p~~~-------~~~~~~~~~m~~~k~~~d~~l 138 (1150)
..|.-||.+.+..... +...+-||.+.-|..-+-+.|
T Consensus 80 --~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~ 123 (125)
T cd04051 80 --LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVL 123 (125)
T ss_pred --CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEE
Confidence 2577899998852211 123467888766554444333
No 15
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=96.65 E-value=0.015 Score=59.16 Aligned_cols=108 Identities=20% Similarity=0.369 Sum_probs=83.4
Q ss_pred eEEEEEEEEEEEeeccccccCCCCeEEEEEEeeCCcccccccccc-cCCcccccCccccccccceeEEEEeeccCCcccc
Q psy11343 24 ITLNFQLEVIVMEVKGLKSLAPNRIVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQPLPAIKVKLFTENPGMLAL 102 (1150)
Q Consensus 24 ~~l~f~lev~v~ev~~l~~~~~~~~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~plp~~kvkl~~e~~g~l~~ 102 (1150)
..+.=+|.|-|.|++|| ++.+-.||++=++|..--+|--.+. .-|.|+..=+|.--+|...+.|.||.++...=+.
T Consensus 7 ~R~~~sL~v~V~EAk~L---p~~~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~ 83 (146)
T cd04013 7 RRTENSLKLWIIEAKGL---PPKKRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKK 83 (146)
T ss_pred eEEEEEEEEEEEEccCC---CCcCCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccc
Confidence 45566788999999998 5666799999999755457866553 5899999999988888889999999887554333
Q ss_pred -cccccceEEeec--CCCCCCCccccccccCCCCC
Q psy11343 103 -EDKELGKVILRP--TPLSSKAPEWHKMLVPKNCA 134 (1150)
Q Consensus 103 -edkelg~v~~~p--~~~~~~~~~~~~m~~~k~~~ 134 (1150)
-|.-+|+|.|-- ..++.....||.+..++..+
T Consensus 84 ~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~ 118 (146)
T cd04013 84 DKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNG 118 (146)
T ss_pred cCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCC
Confidence 578999999842 22566788999998777654
No 16
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=96.62 E-value=0.00081 Score=58.88 Aligned_cols=61 Identities=33% Similarity=0.456 Sum_probs=46.3
Q ss_pred CcccceeeeechhHHHhhhceeEEEEEeeceehhhccccccCCCCccccccccceeeeccCCc
Q psy11343 152 MKHCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVDYIEPAS 214 (1150)
Q Consensus 152 ~k~~gy~~~~g~~~~kkwk~r~~~lvqvsqytfa~cs~~e~ks~p~e~~ql~g~tvdy~~~~~ 214 (1150)
|.|+|||+..+ ...++||+|||||.. ++..+--..-......|...+.|+|.+|....+..
T Consensus 1 ~~~~G~L~~~~-~~~~~wk~r~~vL~~-~~L~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~ 61 (104)
T PF00169_consen 1 CIKEGWLLKKS-SSRKKWKKRYFVLRD-SYLLYYKSSKDKSDSKPKGSIPLDDCTVRPDPSSD 61 (104)
T ss_dssp EEEEEEEEEEE-SSSSSEEEEEEEEET-TEEEEESSTTTTTESSESEEEEGTTEEEEEETSST
T ss_pred CEEEEEEEEEC-CCCCCeEEEEEEEEC-CEEEEEecCccccceeeeEEEEecCceEEEcCccc
Confidence 46899999999 889999999999976 33222222222236899999999999999877654
No 17
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=96.50 E-value=0.015 Score=54.57 Aligned_cols=108 Identities=17% Similarity=0.374 Sum_probs=77.6
Q ss_pred EEEEEEEeeccccccCCCC--eEEEEEEeeCCcccccccccc--cCCcccccCccccccc-cceeEEEEeeccCCccccc
Q psy11343 29 QLEVIVMEVKGLKSLAPNR--IVYCTMEVEGGEKLQTDQAEA--SKPMWDTQADFSTNQP-LPAIKVKLFTENPGMLALE 103 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~--~vyctme~eg~~kl~td~~ea--~~p~w~tq~df~t~~p-lp~~kvkl~~e~~g~l~~e 103 (1150)
+|.|.|++.+||+...... --||.+.+. +.+.+|..+.. ..|.|+..-.|.-..+ -..++|.+|..... .
T Consensus 2 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~-~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~----~ 76 (118)
T cd08681 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIG-GVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR----K 76 (118)
T ss_pred EEEEEEEEccCCCCCCcCCCCCceEEEEEC-CCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC----C
Confidence 5899999999998765332 369999985 58888887643 4899999988877664 35799999987653 2
Q ss_pred ccccceEEeecC--CCCCCCccccccccCCCCCCcCceEEE
Q psy11343 104 DKELGKVILRPT--PLSSKAPEWHKMLVPKNCADQDLKIKI 142 (1150)
Q Consensus 104 dkelg~v~~~p~--~~~~~~~~~~~m~~~k~~~d~~l~i~~ 142 (1150)
|.-||++.+... ......+.|+.+.-+ ....+.|.++|
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~~-~~~~G~i~l~l 116 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTLK-GRYAGEVYLEL 116 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEeccC-CcEeeEEEEEE
Confidence 788999999644 345567899997533 22333455544
No 18
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=96.47 E-value=0.017 Score=56.34 Aligned_cols=100 Identities=18% Similarity=0.327 Sum_probs=71.7
Q ss_pred EEEEEEEEeeccccccCCCC--eEEEEEEeeCCcccccccccc-cCCcccccCcccccc----------ccceeEEEEee
Q psy11343 28 FQLEVIVMEVKGLKSLAPNR--IVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQ----------PLPAIKVKLFT 94 (1150)
Q Consensus 28 f~lev~v~ev~~l~~~~~~~--~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~----------plp~~kvkl~~ 94 (1150)
|+|.|.|.+.+||.....+. -.||.+.+ ||.+.+|..... ..|.|+..-.|.-.. .-|.++|.++.
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~-~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d 79 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSF-LNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFD 79 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEE-CCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEe
Confidence 78999999999996554432 35999998 577888988865 589999987775211 12568899997
Q ss_pred ccCCcccccccccceEEeecC------CCCCCCccccccccCC
Q psy11343 95 ENPGMLALEDKELGKVILRPT------PLSSKAPEWHKMLVPK 131 (1150)
Q Consensus 95 e~~g~l~~edkelg~v~~~p~------~~~~~~~~~~~m~~~k 131 (1150)
.... -.|.-||++.+.|. +..+..|.||.+.-+.
T Consensus 80 ~d~~---~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~ 119 (135)
T cd04017 80 QDSV---GKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG 119 (135)
T ss_pred CcCC---CCCccceEEEeeeeeecccCCCCCCCceEEEeecCC
Confidence 7542 44679999987542 2345677999986333
No 19
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=96.39 E-value=0.012 Score=58.96 Aligned_cols=94 Identities=21% Similarity=0.274 Sum_probs=78.0
Q ss_pred EEEEEEEeeccccccCCCCeEEEEEEeeCCcccccccccccCCcccccCccccccccceeEEEEeeccCCcccccccccc
Q psy11343 29 QLEVIVMEVKGLKSLAPNRIVYCTMEVEGGEKLQTDQAEASKPMWDTQADFSTNQPLPAIKVKLFTENPGMLALEDKELG 108 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~~vyctme~eg~~kl~td~~ea~~p~w~tq~df~t~~plp~~kvkl~~e~~g~l~~edkelg 108 (1150)
.|.|.|.+.+||..--. ---||.+-+ |+.|-.|-....+-|.|+..--|....+--.+.|+++... + +.|.-+|
T Consensus 3 ~L~V~Vv~Ar~L~~~~~-~dPYV~Ik~-g~~k~kT~v~~~~nP~WnE~F~F~~~~~~~~L~v~V~dkd--~--~~DD~lG 76 (127)
T cd08394 3 LLCVLVKKAKLDGAPDK-FNTYVTLKV-QNVKSTTIAVRGSQPCWEQDFMFEINRLDLGLVIELWNKG--L--IWDTLVG 76 (127)
T ss_pred eEEEEEEEeeCCCCCCC-CCCeEEEEE-CCEEeEeeECCCCCCceeeEEEEEEcCCCCEEEEEEEeCC--C--cCCCceE
Confidence 68999999999965321 135999999 6799999999889999999999998887777999999866 3 3889999
Q ss_pred eEEee----cCCCCCCCccccccc
Q psy11343 109 KVILR----PTPLSSKAPEWHKML 128 (1150)
Q Consensus 109 ~v~~~----p~~~~~~~~~~~~m~ 128 (1150)
+|.|. |+..++-.|.||.+.
T Consensus 77 ~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 77 TVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred EEEEEhHHcccCCCCCCCccEecC
Confidence 99984 566677779999986
No 20
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=96.38 E-value=0.017 Score=54.59 Aligned_cols=108 Identities=19% Similarity=0.333 Sum_probs=79.1
Q ss_pred EEEEEEeeccccccCCCC--eEEEEEEeeC--Cccccccccccc-CCcccccCcccccccc-ceeEEEEeeccCCccccc
Q psy11343 30 LEVIVMEVKGLKSLAPNR--IVYCTMEVEG--GEKLQTDQAEAS-KPMWDTQADFSTNQPL-PAIKVKLFTENPGMLALE 103 (1150)
Q Consensus 30 lev~v~ev~~l~~~~~~~--~vyctme~eg--~~kl~td~~ea~-~p~w~tq~df~t~~pl-p~~kvkl~~e~~g~l~~e 103 (1150)
|.|.|++.+||+....+. -.||.+.+.+ +.+.+|.....+ -|.|+..-.|.-..+. ..++|.++....- .
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~----~ 77 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV----M 77 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC----C
Confidence 678999999998765322 3699999964 477888877664 6999999888765553 3589999998652 6
Q ss_pred ccccceEEeecC--CCCCCCccccccccCCCCCCcCceEEEEE
Q psy11343 104 DKELGKVILRPT--PLSSKAPEWHKMLVPKNCADQDLKIKIAC 144 (1150)
Q Consensus 104 dkelg~v~~~p~--~~~~~~~~~~~m~~~k~~~d~~l~i~~~~ 144 (1150)
|.-+|++.+.-. ..+.+...|+.+. |+ .-+.|+|.|.+
T Consensus 78 ~~~iG~~~~~l~~l~~g~~~~~~~~L~-~~--~~g~l~~~~~~ 117 (119)
T cd04036 78 DDHLGTVLFDVSKLKLGEKVRVTFSLN-PQ--GKEELEVEFLL 117 (119)
T ss_pred CcccEEEEEEHHHCCCCCcEEEEEECC-CC--CCceEEEEEEe
Confidence 789999998543 3456777888864 33 34567777765
No 21
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=96.31 E-value=0.016 Score=57.27 Aligned_cols=100 Identities=24% Similarity=0.372 Sum_probs=75.2
Q ss_pred EEEEEEeeccccccCCC-----CeEEEEEEeeCCcccccccccc-cCCcccccCccccccccceeEEEEeeccCCc---c
Q psy11343 30 LEVIVMEVKGLKSLAPN-----RIVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQPLPAIKVKLFTENPGM---L 100 (1150)
Q Consensus 30 lev~v~ev~~l~~~~~~-----~~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~plp~~kvkl~~e~~g~---l 100 (1150)
|+|.|++.+||+-|+.. ---||++.+ |+++.+|...+. .-|.|+.+-.|.-.+|--.+.|.+|.++..- -
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~-g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKY-GPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEE-CCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence 78999999994443322 245999998 788999988875 7899999999987677678999999987521 0
Q ss_pred cccccccceEEee--cCCCCCCCccccccccC
Q psy11343 101 ALEDKELGKVILR--PTPLSSKAPEWHKMLVP 130 (1150)
Q Consensus 101 ~~edkelg~v~~~--p~~~~~~~~~~~~m~~~ 130 (1150)
..-|.-||++.+. --....+...|+.+..+
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~ 112 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL 112 (126)
T ss_pred CCCCceEEEEEEEHHHccCCCEEeeEEEeEeC
Confidence 1258899999997 33345566789987643
No 22
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=96.27 E-value=0.016 Score=55.42 Aligned_cols=97 Identities=23% Similarity=0.438 Sum_probs=71.9
Q ss_pred EEEEEEeeccccccCCC--CeEEEEEEeeCCcccccccccc-cCCcccccCcccccc------ccceeEEEEeeccCCcc
Q psy11343 30 LEVIVMEVKGLKSLAPN--RIVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQ------PLPAIKVKLFTENPGML 100 (1150)
Q Consensus 30 lev~v~ev~~l~~~~~~--~~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~------plp~~kvkl~~e~~g~l 100 (1150)
+.|.|++.+||.....+ ---||++.+ |+++.+|.-.+. ..|.|+..-.|.-.. +-..+.+.+|.+.. +
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l-~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~--~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQL-GKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL--L 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEE-CCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc--c
Confidence 47899999999865432 247999998 688999987764 799999988886544 45678999998853 2
Q ss_pred cccccccceEEeecCC----CCCCCccccccccC
Q psy11343 101 ALEDKELGKVILRPTP----LSSKAPEWHKMLVP 130 (1150)
Q Consensus 101 ~~edkelg~v~~~p~~----~~~~~~~~~~m~~~ 130 (1150)
. .|.-+|++.+.... .......||.+...
T Consensus 78 ~-~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~ 110 (126)
T cd08682 78 G-LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESK 110 (126)
T ss_pred C-CCceeEEEEEEHHHhhccCCCcccEEEECcCC
Confidence 2 47789999885322 33456789998643
No 23
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=96.25 E-value=0.023 Score=54.45 Aligned_cols=113 Identities=18% Similarity=0.300 Sum_probs=79.6
Q ss_pred EEEEEEEeeccccccCCCC--eEEEEEEeeCCcccccccccc-cCCcccccCcccccccc----ceeEEEEeeccCCccc
Q psy11343 29 QLEVIVMEVKGLKSLAPNR--IVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQPL----PAIKVKLFTENPGMLA 101 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~--~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~pl----p~~kvkl~~e~~g~l~ 101 (1150)
+|.|.|++.+||.....+. -.||.+.+. +.+.+|...+. ..|.|+..-.|.-..|- ..+.+.++.... +.
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~--~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD-GQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR--SG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC-CEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC--Cc
Confidence 4789999999998655432 369999886 57778987764 58999999888766442 467888887532 22
Q ss_pred ccccccceEEeecC---CCCCCCccccccccCCC--CCCcCceEEEEE
Q psy11343 102 LEDKELGKVILRPT---PLSSKAPEWHKMLVPKN--CADQDLKIKIAC 144 (1150)
Q Consensus 102 ~edkelg~v~~~p~---~~~~~~~~~~~m~~~k~--~~d~~l~i~~~~ 144 (1150)
-.|.-||+|.+... +.+...+.||.+.-+.. ..-++|.|++.+
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 125 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYI 125 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEE
Confidence 25778999999642 45677899999874421 233456666654
No 24
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=96.17 E-value=0.018 Score=54.69 Aligned_cols=100 Identities=17% Similarity=0.334 Sum_probs=76.5
Q ss_pred EEEEEEEeeccccccC--CCCeEEEEEEeeCCc----ccccccccc-cCCcccccCccccccc---cceeEEEEeeccCC
Q psy11343 29 QLEVIVMEVKGLKSLA--PNRIVYCTMEVEGGE----KLQTDQAEA-SKPMWDTQADFSTNQP---LPAIKVKLFTENPG 98 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~--~~~~vyctme~eg~~----kl~td~~ea-~~p~w~tq~df~t~~p---lp~~kvkl~~e~~g 98 (1150)
+|.|.|++.+||+... ...-.||.+.+.++. +-+|..... .-|.|+..-.|.-..+ -..++|.++.....
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~ 94 (134)
T cd00276 15 RLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSV 94 (134)
T ss_pred EEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCC
Confidence 6899999999998763 334589999997652 346666553 5899999988875543 25689999988764
Q ss_pred cccccccccceEEeecCCCCCCCccccccccCC
Q psy11343 99 MLALEDKELGKVILRPTPLSSKAPEWHKMLVPK 131 (1150)
Q Consensus 99 ~l~~edkelg~v~~~p~~~~~~~~~~~~m~~~k 131 (1150)
..|.-||.+.+-..........|+.|.-+.
T Consensus 95 ---~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~ 124 (134)
T cd00276 95 ---GRNEVIGQVVLGPDSGGEELEHWNEMLASP 124 (134)
T ss_pred ---CCCceeEEEEECCCCCCcHHHHHHHHHhCC
Confidence 467889999998777778888999986553
No 25
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=96.06 E-value=0.028 Score=53.38 Aligned_cols=96 Identities=20% Similarity=0.373 Sum_probs=70.9
Q ss_pred EEEEEEeeccccccCCCC--eEEEEEEeeCCcccccccccc-cCCcccccCcccccccc-ceeEEEEeeccCCccccccc
Q psy11343 30 LEVIVMEVKGLKSLAPNR--IVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQPL-PAIKVKLFTENPGMLALEDK 105 (1150)
Q Consensus 30 lev~v~ev~~l~~~~~~~--~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~pl-p~~kvkl~~e~~g~l~~edk 105 (1150)
|.|.|++.++|.....+. --||.+.+ ||.+.+|..... .-|.|+..-+|.-..+- ..+.|.++.+.. .-.|.
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~---~~~~~ 77 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFY-NGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDL---VSKND 77 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEE-CCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCC---CCCCc
Confidence 788999999997665433 25999988 567788877654 56999999999876653 468888887653 13477
Q ss_pred ccceEEeecCCC--CCCCcccccccc
Q psy11343 106 ELGKVILRPTPL--SSKAPEWHKMLV 129 (1150)
Q Consensus 106 elg~v~~~p~~~--~~~~~~~~~m~~ 129 (1150)
.+|++.+..... ......|+.+..
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~ 103 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLP 103 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCC
Confidence 899999875433 355789998753
No 26
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=96.04 E-value=0.053 Score=54.73 Aligned_cols=98 Identities=18% Similarity=0.363 Sum_probs=72.5
Q ss_pred EEEEEEeeccccccCCC--CeEEEEEEeeCCcccccccccc--cCCcccccCccccccccc-eeEEEEeeccCCcccccc
Q psy11343 30 LEVIVMEVKGLKSLAPN--RIVYCTMEVEGGEKLQTDQAEA--SKPMWDTQADFSTNQPLP-AIKVKLFTENPGMLALED 104 (1150)
Q Consensus 30 lev~v~ev~~l~~~~~~--~~vyctme~eg~~kl~td~~ea--~~p~w~tq~df~t~~plp-~~kvkl~~e~~g~l~~ed 104 (1150)
|.|.|++.+||.....+ ---||.+.+. |.+.+|..... ..|.|+..-.|.-..|.. .+.|.++.... + ..|
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~-~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~--~-~~d 77 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLG-NQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVG--P-NKD 77 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEEC-CEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecC--C-CCC
Confidence 78999999999776554 2369999995 58888987764 689999999998766643 67777775432 1 256
Q ss_pred cccceEEeecCC------CCCCCccccccccCC
Q psy11343 105 KELGKVILRPTP------LSSKAPEWHKMLVPK 131 (1150)
Q Consensus 105 kelg~v~~~p~~------~~~~~~~~~~m~~~k 131 (1150)
.-||+|.+.-.. .+.....||.+.-+.
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~ 110 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPG 110 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCC
Confidence 789999985322 345578999987664
No 27
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=96.01 E-value=0.03 Score=53.20 Aligned_cols=112 Identities=16% Similarity=0.266 Sum_probs=76.3
Q ss_pred EEEEEEEeeccccccCCCC--eEEEEEEeeCCcccccccccc-cCCcccccCccccccccceeEEEEeeccCCccccccc
Q psy11343 29 QLEVIVMEVKGLKSLAPNR--IVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQPLPAIKVKLFTENPGMLALEDK 105 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~--~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~plp~~kvkl~~e~~g~l~~edk 105 (1150)
||.|.|.+.+||.....+. --||.+.+.|....+|..... ..|.|+..-.|.-..+--.+++.+|.+... ..|.
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~---~~~~ 77 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRG---LTDD 77 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCC---CCCc
Confidence 5889999999998665432 259999997656777765544 589999988887666556788889987653 3678
Q ss_pred ccceEEeecCC--CCCCCccccccccCCC-CCCcCceEEEE
Q psy11343 106 ELGKVILRPTP--LSSKAPEWHKMLVPKN-CADQDLKIKIA 143 (1150)
Q Consensus 106 elg~v~~~p~~--~~~~~~~~~~m~~~k~-~~d~~l~i~~~ 143 (1150)
-+|++.+.-.. .+.....|+.+.-+++ ..-+.|.+++.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~ 118 (121)
T cd04042 78 FMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVT 118 (121)
T ss_pred ceEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEE
Confidence 89999985443 2344556777644443 11223444444
No 28
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=95.98 E-value=0.026 Score=52.92 Aligned_cols=98 Identities=22% Similarity=0.324 Sum_probs=72.8
Q ss_pred EEEEEEEEEeeccccccCCCCeEEEEEEeeCCccccccccccc-CCcccccCcccccccc-----ceeEEEEeeccCCcc
Q psy11343 27 NFQLEVIVMEVKGLKSLAPNRIVYCTMEVEGGEKLQTDQAEAS-KPMWDTQADFSTNQPL-----PAIKVKLFTENPGML 100 (1150)
Q Consensus 27 ~f~lev~v~ev~~l~~~~~~~~vyctme~eg~~kl~td~~ea~-~p~w~tq~df~t~~pl-----p~~kvkl~~e~~g~l 100 (1150)
.|+|.|.|.|.+||++- .---||.+.+. |++.+|.....+ -|.|+..-.|.-..|. -.+.+.++.... +
T Consensus 3 ~~~l~V~v~~a~~L~~~--~~dpyv~v~~~-~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~-~- 77 (111)
T cd04011 3 DFQVRVRVIEARQLVGG--NIDPVVKVEVG-GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS-L- 77 (111)
T ss_pred cEEEEEEEEEcccCCCC--CCCCEEEEEEC-CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc-c-
Confidence 48999999999999843 33469999997 678899988765 8999999988865554 357888887653 2
Q ss_pred cccccccceEEeecC-----CCCCCCccccccccC
Q psy11343 101 ALEDKELGKVILRPT-----PLSSKAPEWHKMLVP 130 (1150)
Q Consensus 101 ~~edkelg~v~~~p~-----~~~~~~~~~~~m~~~ 130 (1150)
..|.-||.+.+.-. +..+-.+.|+.++-|
T Consensus 78 -~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~~ 111 (111)
T cd04011 78 -RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTDP 111 (111)
T ss_pred -ccCCccEEEEECCccccCCCCCcceEEEEEeeCc
Confidence 24788999998533 333456788887644
No 29
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=95.92 E-value=0.055 Score=52.23 Aligned_cols=96 Identities=26% Similarity=0.389 Sum_probs=73.7
Q ss_pred EEEEEEeeccccccCCCCeEEEEEEeeCCcccccccccc-cCCcccccCccccccc-cceeEEEEeeccCCccccccccc
Q psy11343 30 LEVIVMEVKGLKSLAPNRIVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQP-LPAIKVKLFTENPGMLALEDKEL 107 (1150)
Q Consensus 30 lev~v~ev~~l~~~~~~~~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~p-lp~~kvkl~~e~~g~l~~edkel 107 (1150)
|.|.|++.+||... .. -.||...+ |+++.+|.-..- .-|.|+..-.|.-.+| -+.+.+.++.+... .|.-|
T Consensus 2 L~V~Vi~a~~L~~~-~~-Dpyv~v~l-~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~----~~~~l 74 (121)
T cd08378 2 LYVRVVKARGLPAN-SN-DPVVEVKL-GNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA----KDDFL 74 (121)
T ss_pred EEEEEEEecCCCcc-cC-CCEEEEEE-CCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC----cCcee
Confidence 68999999999887 22 36999998 468999987654 5899999999997764 46799999988754 66779
Q ss_pred ceEEeecCC-------CCCCCccccccccCCC
Q psy11343 108 GKVILRPTP-------LSSKAPEWHKMLVPKN 132 (1150)
Q Consensus 108 g~v~~~p~~-------~~~~~~~~~~m~~~k~ 132 (1150)
|++.+.-.. .++..+.||.+.-.++
T Consensus 75 G~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~ 106 (121)
T cd08378 75 GGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG 106 (121)
T ss_pred eeEEEEhHhCcCCCCCCCCCCcceEEccCCCC
Confidence 999974222 2445679999876665
No 30
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=95.92 E-value=0.047 Score=52.72 Aligned_cols=101 Identities=23% Similarity=0.420 Sum_probs=76.5
Q ss_pred EEEEEEEeeccccccCCCC--eEEEEEEeeCCcccccccccc-cCCcccccCccccccccceeEEEEeeccCCc------
Q psy11343 29 QLEVIVMEVKGLKSLAPNR--IVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQPLPAIKVKLFTENPGM------ 99 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~--~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~plp~~kvkl~~e~~g~------ 99 (1150)
+|.|.|++.+||.....+. -.||.+.+ |+.+.+|..... .-|.|+..-+|....|--.+.|.+|......
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~-~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQV-GKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEE-CCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccce
Confidence 5789999999997654322 35999988 567778877753 6799999999987666557899999876432
Q ss_pred --ccccccccceEEeecCCCCCCCccccccccCC
Q psy11343 100 --LALEDKELGKVILRPTPLSSKAPEWHKMLVPK 131 (1150)
Q Consensus 100 --l~~edkelg~v~~~p~~~~~~~~~~~~m~~~k 131 (1150)
..-.|..+|++.+.....+...+.||.+. |+
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~~~~~~w~~L~-~~ 113 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLSGEMDVWYNLE-KR 113 (127)
T ss_pred eccccCCCcceEEEEEhHHccCCCCeEEECc-cC
Confidence 22358899999998777778889999964 44
No 31
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=95.86 E-value=0.071 Score=49.92 Aligned_cols=98 Identities=20% Similarity=0.362 Sum_probs=71.9
Q ss_pred EEEEEEEeeccccccCCCC--eEEEEEEeeCCcccccccccc-cCCcccccCccccccccceeEEEEeeccCCccccccc
Q psy11343 29 QLEVIVMEVKGLKSLAPNR--IVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQPLPAIKVKLFTENPGMLALEDK 105 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~--~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~plp~~kvkl~~e~~g~l~~edk 105 (1150)
.|+|.|++.+||+....+. -.||.+.+. +.+.+|..... .-|.|++.-.|.-..+--.+.|.+|..... -.|.
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~-~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~---~~~~ 77 (119)
T cd08377 2 FLQVKVIRASGLAAADIGGKSDPFCVLELV-NARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKD---KKPE 77 (119)
T ss_pred EEEEEEEeeeCCCCCCCCCCCCcEEEEEEC-CEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCC---CCCc
Confidence 4789999999998654433 369999985 56678876654 579999998888766556788888876541 2467
Q ss_pred ccceEEeecCCCCCCCccccccccC
Q psy11343 106 ELGKVILRPTPLSSKAPEWHKMLVP 130 (1150)
Q Consensus 106 elg~v~~~p~~~~~~~~~~~~m~~~ 130 (1150)
-+|++.+.-.......+.|+.+..+
T Consensus 78 ~iG~~~~~l~~~~~~~~~~~~l~~~ 102 (119)
T cd08377 78 FLGKVAIPLLSIKNGERKWYALKDK 102 (119)
T ss_pred eeeEEEEEHHHCCCCCceEEECccc
Confidence 8999998655555566889986533
No 32
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=95.71 E-value=0.079 Score=50.77 Aligned_cols=97 Identities=18% Similarity=0.293 Sum_probs=70.5
Q ss_pred EEEEEEEeeccccccCCCCe--EEEEEEeeCCccccccccc-ccCCcccccCccccccccceeEEEEeeccCCccccccc
Q psy11343 29 QLEVIVMEVKGLKSLAPNRI--VYCTMEVEGGEKLQTDQAE-ASKPMWDTQADFSTNQPLPAIKVKLFTENPGMLALEDK 105 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~~--vyctme~eg~~kl~td~~e-a~~p~w~tq~df~t~~plp~~kvkl~~e~~g~l~~edk 105 (1150)
+|.|.|++.+||+....+.. -||.+-+.|-..-+|.... ..-|.|+..-+|.-..+.-.+.|.+|.+..- ..|.
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~---~~d~ 77 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTL---SRDD 77 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCC---CCCC
Confidence 47899999999987765543 4999998643334665543 3689999999888766656788998877642 3578
Q ss_pred ccceEEeecCC--CC-CCCccccccc
Q psy11343 106 ELGKVILRPTP--LS-SKAPEWHKML 128 (1150)
Q Consensus 106 elg~v~~~p~~--~~-~~~~~~~~m~ 128 (1150)
.+|++.+.... +. .....|+.+.
T Consensus 78 ~iG~~~~~~~~~~~~~~~~~~W~~L~ 103 (121)
T cd04054 78 VIGKVSLTREVISAHPRGIDGWMNLT 103 (121)
T ss_pred EEEEEEEcHHHhccCCCCCCcEEECe
Confidence 89999997432 22 2477899975
No 33
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=95.62 E-value=0.063 Score=51.87 Aligned_cols=109 Identities=17% Similarity=0.258 Sum_probs=76.5
Q ss_pred EEEEEEEEEeeccccccCC------------CCeEEEEEEeeCCccccccccccc-CCcccccCccccccccceeEEEEe
Q psy11343 27 NFQLEVIVMEVKGLKSLAP------------NRIVYCTMEVEGGEKLQTDQAEAS-KPMWDTQADFSTNQPLPAIKVKLF 93 (1150)
Q Consensus 27 ~f~lev~v~ev~~l~~~~~------------~~~vyctme~eg~~kl~td~~ea~-~p~w~tq~df~t~~plp~~kvkl~ 93 (1150)
+-.|.|.|.|.+||+.... .--.||++-+.|....+|.....+ -|.|+..-+|.-. +--.+.|.++
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 3468999999999986543 235799999975554677665544 4999999888865 4467888888
Q ss_pred eccCCcccccccccceEEeecCCC----CCCCccccccccCCCCCCcCceEEEEE
Q psy11343 94 TENPGMLALEDKELGKVILRPTPL----SSKAPEWHKMLVPKNCADQDLKIKIAC 144 (1150)
Q Consensus 94 ~e~~g~l~~edkelg~v~~~p~~~----~~~~~~~~~m~~~k~~~d~~l~i~~~~ 144 (1150)
.... + -.|..+|++.+..... +.....|+.+. | .+.++++|.+
T Consensus 82 d~~~--~-~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~-~----~G~l~l~~~~ 128 (132)
T cd04014 82 HDAA--I-GPDDFVANCTISFEDLIQRGSGSFDLWVDLE-P----QGKLHVKIEL 128 (132)
T ss_pred eCCC--C-CCCceEEEEEEEhHHhcccCCCcccEEEEcc-C----CcEEEEEEEE
Confidence 6543 1 2467899999974322 45679999985 2 2456666554
No 34
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=95.51 E-value=0.05 Score=51.79 Aligned_cols=97 Identities=15% Similarity=0.307 Sum_probs=69.9
Q ss_pred EEEEEEEeeccccccCCCC--eEEEEEEeeCCccccccccc--ccCCcccccCccccccc----cceeEEEEeeccCCcc
Q psy11343 29 QLEVIVMEVKGLKSLAPNR--IVYCTMEVEGGEKLQTDQAE--ASKPMWDTQADFSTNQP----LPAIKVKLFTENPGML 100 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~--~vyctme~eg~~kl~td~~e--a~~p~w~tq~df~t~~p----lp~~kvkl~~e~~g~l 100 (1150)
+|+|.|++.+||+...... -.||.+.+. +.+..|.... ...|.|++.-.|.-..| ...+.|.+|.....
T Consensus 2 ~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~-~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~-- 78 (124)
T cd04049 2 TLEVLLISAKGLQDTDFLGKIDPYVIIQCR-TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNF-- 78 (124)
T ss_pred eEEEEEEecCCCCCCCCCCCcCceEEEEEC-CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccC--
Confidence 5889999999998654332 269999984 5666777665 36899999888877666 46788888877652
Q ss_pred cccccccceEEeecC--CCCCCCcccccccc
Q psy11343 101 ALEDKELGKVILRPT--PLSSKAPEWHKMLV 129 (1150)
Q Consensus 101 ~~edkelg~v~~~p~--~~~~~~~~~~~m~~ 129 (1150)
-.|..+|.+.+.-. ...+..+.|+.+..
T Consensus 79 -~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 79 -SDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred -CCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 25789999988522 23456677876543
No 35
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=95.49 E-value=0.1 Score=49.99 Aligned_cols=99 Identities=18% Similarity=0.132 Sum_probs=69.9
Q ss_pred EEEEEEEeeccccccCCCC--eEEEEEEeeCC------cccccccccc-cCCcccccCccccccccceeEEEEeeccCCc
Q psy11343 29 QLEVIVMEVKGLKSLAPNR--IVYCTMEVEGG------EKLQTDQAEA-SKPMWDTQADFSTNQPLPAIKVKLFTENPGM 99 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~--~vyctme~eg~------~kl~td~~ea-~~p~w~tq~df~t~~plp~~kvkl~~e~~g~ 99 (1150)
.|.|.|++.+||.....+. --||.+.+.|. .+.+|..... .-|.|++.-+|.-+.+--.+.|.++.....
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~- 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRL- 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCC-
Confidence 3789999999997654322 25999999864 2457765443 579999998888655466788999977642
Q ss_pred ccccccccceEEeecCC--------CCCCCccccccccC
Q psy11343 100 LALEDKELGKVILRPTP--------LSSKAPEWHKMLVP 130 (1150)
Q Consensus 100 l~~edkelg~v~~~p~~--------~~~~~~~~~~m~~~ 130 (1150)
-.|..+|++.+.... .++-.+.||.+..+
T Consensus 80 --~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~ 116 (133)
T cd04033 80 --TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR 116 (133)
T ss_pred --CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec
Confidence 257889999985222 23446799998743
No 36
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=95.47 E-value=0.14 Score=50.43 Aligned_cols=99 Identities=19% Similarity=0.330 Sum_probs=74.4
Q ss_pred EEEEEEEeeccccccC-CCCeEEEEEEeeCCccccccccc--ccCCcccccCccccccccceeEEEEeeccCCccccccc
Q psy11343 29 QLEVIVMEVKGLKSLA-PNRIVYCTMEVEGGEKLQTDQAE--ASKPMWDTQADFSTNQPLPAIKVKLFTENPGMLALEDK 105 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~-~~~~vyctme~eg~~kl~td~~e--a~~p~w~tq~df~t~~plp~~kvkl~~e~~g~l~~edk 105 (1150)
+|+|.|+|.|+++... ..---||++-+ |+.+.+|.-.. ..-|.|+..=.|.-.++.-.+.|.+|.+... -.|.
T Consensus 3 ~L~v~v~~Ak~l~~~~~g~sDPYv~i~l-g~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~---~~dd 78 (121)
T cd04016 3 RLSITVVQAKLVKNYGLTRMDPYCRIRV-GHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAF---TMDE 78 (121)
T ss_pred EEEEEEEEccCCCcCCCCCCCceEEEEE-CCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCC---cCCc
Confidence 5899999999988765 22336999999 67888887765 3699999998888766667899999998851 1378
Q ss_pred ccceEEeecC---CCCCCCccccccccCCC
Q psy11343 106 ELGKVILRPT---PLSSKAPEWHKMLVPKN 132 (1150)
Q Consensus 106 elg~v~~~p~---~~~~~~~~~~~m~~~k~ 132 (1150)
-+|++.+.-. ..+....+|+.+. +++
T Consensus 79 ~iG~~~i~l~~~~~~g~~~~~W~~L~-~~~ 107 (121)
T cd04016 79 RIAWTHITIPESVFNGETLDDWYSLS-GKQ 107 (121)
T ss_pred eEEEEEEECchhccCCCCccccEeCc-Ccc
Confidence 8988766432 2345579999985 444
No 37
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=95.37 E-value=0.14 Score=48.29 Aligned_cols=100 Identities=21% Similarity=0.414 Sum_probs=71.4
Q ss_pred EEEEEEEEeeccccccC----CCCeEEEEEEeeC-----Cccccccccc-cc-CCcccccCccccccc-cceeEEEEeec
Q psy11343 28 FQLEVIVMEVKGLKSLA----PNRIVYCTMEVEG-----GEKLQTDQAE-AS-KPMWDTQADFSTNQP-LPAIKVKLFTE 95 (1150)
Q Consensus 28 f~lev~v~ev~~l~~~~----~~~~vyctme~eg-----~~kl~td~~e-a~-~p~w~tq~df~t~~p-lp~~kvkl~~e 95 (1150)
++|+|.|++.+||+... ..--.||++++.| +.+..|.... .+ -|.|+..-.|.-..| ...+++.+|.+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 57999999999998654 2335799999974 3456776643 34 999999988886644 35689999988
Q ss_pred cCCcccccccccceEEeecCCCCCCCccccccccCCC
Q psy11343 96 NPGMLALEDKELGKVILRPTPLSSKAPEWHKMLVPKN 132 (1150)
Q Consensus 96 ~~g~l~~edkelg~v~~~p~~~~~~~~~~~~m~~~k~ 132 (1150)
+.. .|.-+|.+.+.-.... .-.+|..+.-+++
T Consensus 82 ~~~----~~~~iG~~~~~l~~l~-~g~~~~~l~~~~~ 113 (128)
T cd00275 82 DSG----DDDFLGQACLPLDSLR-QGYRHVPLLDSKG 113 (128)
T ss_pred CCC----CCcEeEEEEEEhHHhc-CceEEEEecCCCC
Confidence 865 7789999998765442 2345655554444
No 38
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=95.28 E-value=0.18 Score=51.20 Aligned_cols=118 Identities=14% Similarity=0.283 Sum_probs=83.9
Q ss_pred eEEEEEEEEEEEeeccccccCC-----------------------------C---CeEEEEEEeeCCcccccccccc-cC
Q psy11343 24 ITLNFQLEVIVMEVKGLKSLAP-----------------------------N---RIVYCTMEVEGGEKLQTDQAEA-SK 70 (1150)
Q Consensus 24 ~~l~f~lev~v~ev~~l~~~~~-----------------------------~---~~vyctme~eg~~kl~td~~ea-~~ 70 (1150)
+.|+=+|+|.|.|+++|....- + --.||++.+.|...-+|...+. .-
T Consensus 3 ~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~n 82 (158)
T cd04015 3 VLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSEN 82 (158)
T ss_pred eEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCC
Confidence 5688899999999999976431 1 1389999996543347766554 58
Q ss_pred CcccccCccccccccceeEEEEeeccCCcccccccccceEEee--cCCCCCCCccccccccCCCCCC-cCceEEEEEE
Q psy11343 71 PMWDTQADFSTNQPLPAIKVKLFTENPGMLALEDKELGKVILR--PTPLSSKAPEWHKMLVPKNCAD-QDLKIKIACR 145 (1150)
Q Consensus 71 p~w~tq~df~t~~plp~~kvkl~~e~~g~l~~edkelg~v~~~--p~~~~~~~~~~~~m~~~k~~~d-~~l~i~~~~~ 145 (1150)
|.|+..-.|.-.++.-.+.|.++.+.. +.|..+|++.+. ....+.....|+.+.-+.+.+. ..-+|++.++
T Consensus 83 P~WnE~F~~~~~~~~~~l~~~V~d~d~----~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~ 156 (158)
T cd04015 83 PVWNESFHIYCAHYASHVEFTVKDNDV----VGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQ 156 (158)
T ss_pred CccceEEEEEccCCCCEEEEEEEeCCC----cCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEE
Confidence 999999998877777788999988754 246799999885 3334566789999876533332 2356666554
No 39
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=95.23 E-value=0.12 Score=49.18 Aligned_cols=103 Identities=16% Similarity=0.303 Sum_probs=73.6
Q ss_pred ceEEEE-----EEEEEEEeeccccccCCCC--eEEEEEEeeCC--cccccccccc-cCCcccccCccccccc-cc--eeE
Q psy11343 23 DITLNF-----QLEVIVMEVKGLKSLAPNR--IVYCTMEVEGG--EKLQTDQAEA-SKPMWDTQADFSTNQP-LP--AIK 89 (1150)
Q Consensus 23 d~~l~f-----~lev~v~ev~~l~~~~~~~--~vyctme~eg~--~kl~td~~ea-~~p~w~tq~df~t~~p-lp--~~k 89 (1150)
.+.|.| +|.|.|++.+||.....+. -.||.+.+.++ .+.+|..... ..|.|+..-.|.-..+ +. .++
T Consensus 6 ~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~ 85 (124)
T cd08385 6 QFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLV 85 (124)
T ss_pred EEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEE
Confidence 445555 7899999999998654332 46899888643 5667877654 6899999988875542 33 688
Q ss_pred EEEeeccCCcccccccccceEEeecCC--CCCCCccccccc
Q psy11343 90 VKLFTENPGMLALEDKELGKVILRPTP--LSSKAPEWHKML 128 (1150)
Q Consensus 90 vkl~~e~~g~l~~edkelg~v~~~p~~--~~~~~~~~~~m~ 128 (1150)
|.++.... . -.|.-||++.+.... .+.....|+.|.
T Consensus 86 ~~V~d~d~--~-~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 86 FSVYDFDR--F-SKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred EEEEeCCC--C-CCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 88887653 2 246689999986443 477888999874
No 40
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=95.22 E-value=0.088 Score=50.59 Aligned_cols=98 Identities=19% Similarity=0.313 Sum_probs=71.2
Q ss_pred EEEEEEeeccccccCCCCeEEEEEEeeC-Ccccccccccc-cCCcccccCccccccccceeEEEEeeccCCccccccccc
Q psy11343 30 LEVIVMEVKGLKSLAPNRIVYCTMEVEG-GEKLQTDQAEA-SKPMWDTQADFSTNQPLPAIKVKLFTENPGMLALEDKEL 107 (1150)
Q Consensus 30 lev~v~ev~~l~~~~~~~~vyctme~eg-~~kl~td~~ea-~~p~w~tq~df~t~~plp~~kvkl~~e~~g~l~~edkel 107 (1150)
|-|.|++.+||......--.||.+++.+ +.+-+|..... .-|.|+..-.|.-...--.+.|.+|..... -.|+-|
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~---~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKK---SDSKFL 77 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCC---CCCceE
Confidence 4578999999976222233699999975 56778888877 489999998776543344689999977653 368999
Q ss_pred ceEEeecCC--CCCCCccccccccC
Q psy11343 108 GKVILRPTP--LSSKAPEWHKMLVP 130 (1150)
Q Consensus 108 g~v~~~p~~--~~~~~~~~~~m~~~ 130 (1150)
|++.+.... +.+....|+.+...
T Consensus 78 G~~~i~l~~l~~~~~~~~~~~L~~~ 102 (126)
T cd08678 78 GLAIVPFDELRKNPSGRQIFPLQGR 102 (126)
T ss_pred EEEEEeHHHhccCCceeEEEEecCC
Confidence 999986443 44566789887543
No 41
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=95.07 E-value=0.05 Score=51.17 Aligned_cols=95 Identities=17% Similarity=0.424 Sum_probs=68.8
Q ss_pred EEEEEEeeccccccCC-C--CeEEEEEEeeCCcccccccccc-cCCcc-cccCccccccc-c--ceeEEEEeeccCCccc
Q psy11343 30 LEVIVMEVKGLKSLAP-N--RIVYCTMEVEGGEKLQTDQAEA-SKPMW-DTQADFSTNQP-L--PAIKVKLFTENPGMLA 101 (1150)
Q Consensus 30 lev~v~ev~~l~~~~~-~--~~vyctme~eg~~kl~td~~ea-~~p~w-~tq~df~t~~p-l--p~~kvkl~~e~~g~l~ 101 (1150)
|+|.|++.+||..... + ---||++.+. +.+.+|.-... .-|.| +..-.|.-.++ | -.++|.++.... +.
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~-~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~--~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG-STTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT--YS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEEC-CeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC--CC
Confidence 6899999999976542 2 2369999995 58899988765 56999 88877776554 2 268999998764 22
Q ss_pred ccccccceEEeecCC-----CCCCCccccccc
Q psy11343 102 LEDKELGKVILRPTP-----LSSKAPEWHKML 128 (1150)
Q Consensus 102 ~edkelg~v~~~p~~-----~~~~~~~~~~m~ 128 (1150)
.|.-+|++.+.-.. ...+.+.||++.
T Consensus 78 -~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 -ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred -CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 45679999985322 245689999863
No 42
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=95.05 E-value=0.069 Score=53.02 Aligned_cols=106 Identities=22% Similarity=0.476 Sum_probs=73.5
Q ss_pred EEEEEEeeccccccCCCCeEEEEEEeeCC----cccccccccc-cCCcccccCccccccccceeEEEEeeccCCc----c
Q psy11343 30 LEVIVMEVKGLKSLAPNRIVYCTMEVEGG----EKLQTDQAEA-SKPMWDTQADFSTNQPLPAIKVKLFTENPGM----L 100 (1150)
Q Consensus 30 lev~v~ev~~l~~~~~~~~vyctme~eg~----~kl~td~~ea-~~p~w~tq~df~t~~plp~~kvkl~~e~~g~----l 100 (1150)
|.|.|.+.+||++. ---||++||+++ ++.+|....- .-|.|+..-+|.-..+. .+.+.+|-.+.+- -
T Consensus 1 L~V~V~~A~~L~~~---sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~s~-~L~~~v~d~~~~~~~~d~ 76 (118)
T cd08686 1 LNVIVHSAQGFKQS---ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEGSQ-TLRILCYEKCYSKVKLDG 76 (118)
T ss_pred CEEEEEeCCCCCCC---CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCCCC-EEEEEEEEcccccccccc
Confidence 67999999999875 347999999862 5689988875 68999999999987655 7889999986432 1
Q ss_pred cccccccce--EEeecCCCCCCCccccccccCCCCCCcCceEEEEEE
Q psy11343 101 ALEDKELGK--VILRPTPLSSKAPEWHKMLVPKNCADQDLKIKIACR 145 (1150)
Q Consensus 101 ~~edkelg~--v~~~p~~~~~~~~~~~~m~~~k~~~d~~l~i~~~~~ 145 (1150)
.-.|+=+|| |.|.|... +.--|++-++.=| .++|.+++|
T Consensus 77 ~~~d~~~G~g~i~Ld~~~~--~~~~~~~~~~~~~----~~~~~~s~~ 117 (118)
T cd08686 77 EGTDAIMGKGQIQLDPQSL--QTKKWQEKVISMN----GITVNLSIK 117 (118)
T ss_pred cCcccEEEEEEEEECHHHh--ccCCeeEEEEEec----CEEEEEEEe
Confidence 234677855 55555544 3336776544332 355555554
No 43
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=95.01 E-value=0.1 Score=50.30 Aligned_cols=102 Identities=13% Similarity=0.256 Sum_probs=74.8
Q ss_pred EEEEEEEeeccccccCCC--CeEEEEEEeeCC----cccccccccc-cCCcccccCccccccc-cc--eeEEEEeeccCC
Q psy11343 29 QLEVIVMEVKGLKSLAPN--RIVYCTMEVEGG----EKLQTDQAEA-SKPMWDTQADFSTNQP-LP--AIKVKLFTENPG 98 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~--~~vyctme~eg~----~kl~td~~ea-~~p~w~tq~df~t~~p-lp--~~kvkl~~e~~g 98 (1150)
+|.|.|++.+||.....+ ---||.+.+-++ .+..|..... ..|.|+..-.|.-..+ ++ .++|.++....+
T Consensus 14 ~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~ 93 (133)
T cd08384 14 GLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIG 93 (133)
T ss_pred EEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCC
Confidence 689999999999765433 235888888642 3556666654 5699999988875443 33 589999976543
Q ss_pred cccccccccceEEeecCCCCCCCccccccccCCCC
Q psy11343 99 MLALEDKELGKVILRPTPLSSKAPEWHKMLVPKNC 133 (1150)
Q Consensus 99 ~l~~edkelg~v~~~p~~~~~~~~~~~~m~~~k~~ 133 (1150)
..|.-||.+.+.....+.....||.|.-.++.
T Consensus 94 ---~~~~~lG~~~i~l~~~~~~~~~W~~~l~~~~~ 125 (133)
T cd08384 94 ---KSNDYIGGLQLGINAKGERLRHWLDCLKNPDK 125 (133)
T ss_pred ---CCccEEEEEEEecCCCCchHHHHHHHHhCCCC
Confidence 35678999999888877888899998755543
No 44
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=94.97 E-value=0.16 Score=49.15 Aligned_cols=99 Identities=21% Similarity=0.381 Sum_probs=71.2
Q ss_pred EEEEEEEeeccccccC-CC--CeEEEEEEeeCCcccccccccc-cCCcccccCccccccccceeEEEEeeccCCcccccc
Q psy11343 29 QLEVIVMEVKGLKSLA-PN--RIVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQPLPAIKVKLFTENPGMLALED 104 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~-~~--~~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~plp~~kvkl~~e~~g~l~~ed 104 (1150)
+|.|.|.|.+||+..- .+ --=||.+-+.+..+.+|...+. .-|.|+...+|.-+..-=.+.|.++..... -.|
T Consensus 1 ~l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~---~~~ 77 (121)
T cd08401 1 SLKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVL---RRD 77 (121)
T ss_pred CeEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCC---CCC
Confidence 3678999999998642 21 2349999995444567776665 689999999998776545788888887742 457
Q ss_pred cccceEEeecCCC--CCCCccccccccC
Q psy11343 105 KELGKVILRPTPL--SSKAPEWHKMLVP 130 (1150)
Q Consensus 105 kelg~v~~~p~~~--~~~~~~~~~m~~~ 130 (1150)
..+|++.+.-.-. ......|+.+..+
T Consensus 78 ~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 105 (121)
T cd08401 78 SVIGKVAIKKEDLHKYYGKDTWFPLQPV 105 (121)
T ss_pred ceEEEEEEEHHHccCCCCcEeeEEEEcc
Confidence 8899999863322 3445789998754
No 45
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=94.92 E-value=0.11 Score=48.83 Aligned_cols=84 Identities=19% Similarity=0.310 Sum_probs=63.6
Q ss_pred EEEEEEEeeccccccC--CC-CeEEEEEEeeC-Cccccccccccc-CCcccccCccccccccceeEEEEeeccCCccccc
Q psy11343 29 QLEVIVMEVKGLKSLA--PN-RIVYCTMEVEG-GEKLQTDQAEAS-KPMWDTQADFSTNQPLPAIKVKLFTENPGMLALE 103 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~--~~-~~vyctme~eg-~~kl~td~~ea~-~p~w~tq~df~t~~plp~~kvkl~~e~~g~l~~e 103 (1150)
.|+|.|.+.+||+... .+ ---||++.+.| ..+.+|.....+ .|.|+..-.|.-+..--.++|.+|..... -.
T Consensus 3 ~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~---~~ 79 (124)
T cd04044 3 VLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDK---RK 79 (124)
T ss_pred EEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCC---CC
Confidence 4789999999998432 11 24799999987 477888777664 89999998887654455788888877653 36
Q ss_pred ccccceEEeecC
Q psy11343 104 DKELGKVILRPT 115 (1150)
Q Consensus 104 dkelg~v~~~p~ 115 (1150)
|..||++.+...
T Consensus 80 d~~iG~~~~~l~ 91 (124)
T cd04044 80 DKLIGTAEFDLS 91 (124)
T ss_pred CceeEEEEEEHH
Confidence 899999998643
No 46
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=94.62 E-value=0.18 Score=47.17 Aligned_cols=104 Identities=19% Similarity=0.382 Sum_probs=73.0
Q ss_pred EEEEEEeeccccccCC--------CCeEEEEEEeeCCcccccccccc-cCCcccccCcccccc-ccceeEEEEeeccCCc
Q psy11343 30 LEVIVMEVKGLKSLAP--------NRIVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQ-PLPAIKVKLFTENPGM 99 (1150)
Q Consensus 30 lev~v~ev~~l~~~~~--------~~~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~-plp~~kvkl~~e~~g~ 99 (1150)
|.|.|.+.+||..... .---||++.+. +.+.+|..... .-|.|++.-+|.-.. +--.++|.+|.....
T Consensus 3 l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~-~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~- 80 (121)
T cd08391 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG-AQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD- 80 (121)
T ss_pred EEEEEEEccCCcccccccccCCCCCcCCEEEEEEC-CEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC-
Confidence 6789999999985432 12369999985 58888877654 589999987775432 345788888877654
Q ss_pred ccccccccceEEee--cCCCCCCCccccccccCCCCCCcCceEE
Q psy11343 100 LALEDKELGKVILR--PTPLSSKAPEWHKMLVPKNCADQDLKIK 141 (1150)
Q Consensus 100 l~~edkelg~v~~~--p~~~~~~~~~~~~m~~~k~~~d~~l~i~ 141 (1150)
.|..+|++.+. .-........|+.+... ..+.+.|+
T Consensus 81 ---~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~---~~G~~~~~ 118 (121)
T cd08391 81 ---KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV---KSGRLHLK 118 (121)
T ss_pred ---CCCcEEEEEEEHHHhcccCccceEEECcCC---CCceEEEE
Confidence 77889999985 33345567899997532 33445544
No 47
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=94.61 E-value=0.23 Score=46.58 Aligned_cols=95 Identities=17% Similarity=0.323 Sum_probs=71.1
Q ss_pred EEEEEEeeccccccCCCC--eEEEEEEeeCCcccccccccc-cCCcccccCccccccc-cceeEEEEeeccCCccccccc
Q psy11343 30 LEVIVMEVKGLKSLAPNR--IVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQP-LPAIKVKLFTENPGMLALEDK 105 (1150)
Q Consensus 30 lev~v~ev~~l~~~~~~~--~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~p-lp~~kvkl~~e~~g~l~~edk 105 (1150)
|.|.|++.+||+....+. --||.+-+ |+.+.+|..... .-|.|+..-+|.-..+ --.+.|.+|..... ..|.
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~---~~~~ 77 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRL-GNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTG---KKDE 77 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEE-CCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCC---CCCC
Confidence 568899999998765332 36898888 578888887654 7899999888876655 35688888877642 3678
Q ss_pred ccceEEeec--CCCCCCCccccccc
Q psy11343 106 ELGKVILRP--TPLSSKAPEWHKML 128 (1150)
Q Consensus 106 elg~v~~~p--~~~~~~~~~~~~m~ 128 (1150)
.+|++.+.- .........|+.+.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~ 102 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELE 102 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEcc
Confidence 999999864 44456778898864
No 48
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=94.46 E-value=0.26 Score=46.62 Aligned_cols=97 Identities=19% Similarity=0.319 Sum_probs=69.8
Q ss_pred EEEEEEeeccccccCC--CC--eEEEEEEeeCCcccccccccc-cCCcccccCcccccc-ccceeEEEEeeccCCccccc
Q psy11343 30 LEVIVMEVKGLKSLAP--NR--IVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQ-PLPAIKVKLFTENPGMLALE 103 (1150)
Q Consensus 30 lev~v~ev~~l~~~~~--~~--~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~-plp~~kvkl~~e~~g~l~~e 103 (1150)
|.|.|++.+||..... +. --||.+-+ |+.+.+|..... .-|.|+++-+|.... +--.+.|.++..... -.
T Consensus 3 l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~-~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~---~~ 78 (128)
T cd04024 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSV-GAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRF---AG 78 (128)
T ss_pred EEEEEEEeeCCCcccCCCCCCcCCeEEEEE-CCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCC---CC
Confidence 6789999999975443 22 35888776 678888887653 679999999998876 356788888876531 25
Q ss_pred ccccceEEeecCC-----CCCCCccccccccC
Q psy11343 104 DKELGKVILRPTP-----LSSKAPEWHKMLVP 130 (1150)
Q Consensus 104 dkelg~v~~~p~~-----~~~~~~~~~~m~~~ 130 (1150)
|..||++.+.... .....+.|+.+...
T Consensus 79 ~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~ 110 (128)
T cd04024 79 KDYLGEFDIALEEVFADGKTGQSDKWITLKST 110 (128)
T ss_pred CCcceEEEEEHHHhhcccccCccceeEEccCc
Confidence 7889999986322 33457899996543
No 49
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.17 E-value=0.042 Score=51.45 Aligned_cols=52 Identities=25% Similarity=0.528 Sum_probs=37.9
Q ss_pred cceeeeech-hHHHhhhceeEEEEEeeceehhhccccc-cCCCCccccccccceeee
Q psy11343 155 CGYLFAYGK-STWRKWKKRYFVLVQVSQYTFAMCSFKE-KKSDPSEFMQLDGYTVDY 209 (1150)
Q Consensus 155 ~gy~~~~g~-~~~kkwk~r~~~lvqvsqytfa~cs~~e-~ks~p~e~~ql~g~tvdy 209 (1150)
||||.=.|. ..+|.||||+|||-+=- -.++-|+. ....|...+-|.+-++.+
T Consensus 2 ~GyL~K~g~~~~~K~WkkRWFvL~~~~---~~L~Yyk~~~d~~p~G~I~L~~~~~~~ 55 (95)
T cd01265 2 CGYLHKIEGKGPLRGRRSRWFALDDRT---CYLYYYKDSQDAKPLGRVDLSGAAFTY 55 (95)
T ss_pred cccEEEecCCCCCcCceeEEEEEcCCC---cEEEEECCCCcccccceEECCccEEEc
Confidence 999999985 45999999999995311 11334454 357888999999876654
No 50
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=94.16 E-value=0.39 Score=46.24 Aligned_cols=100 Identities=21% Similarity=0.377 Sum_probs=71.8
Q ss_pred EEEEEEeeccccccCCCC--eEEEEEEeeCCcccccccccc-cCCcccccCccccccccceeEEEEeeccCCcccc-ccc
Q psy11343 30 LEVIVMEVKGLKSLAPNR--IVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQPLPAIKVKLFTENPGMLAL-EDK 105 (1150)
Q Consensus 30 lev~v~ev~~l~~~~~~~--~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~plp~~kvkl~~e~~g~l~~-edk 105 (1150)
|+|.|++.+||.....+. -.||.+.++|+.+.+|..... ..|.|+..-.|.-. +--.+.|.+|.... ..- +|.
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~-~~~~l~i~V~d~~~--~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVG-PSSIITIQVFDQKK--FKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeC-CCCEEEEEEEECCC--CCCCCCc
Confidence 789999999997654332 369999998888889987765 59999988888753 46678899997654 233 368
Q ss_pred ccceEEeecCCC---CCCCccccccccCCC
Q psy11343 106 ELGKVILRPTPL---SSKAPEWHKMLVPKN 132 (1150)
Q Consensus 106 elg~v~~~p~~~---~~~~~~~~~m~~~k~ 132 (1150)
-||++.+.-... ....+.|+.+.-++.
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~ 108 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKK 108 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCC
Confidence 899999853332 222467888755543
No 51
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=93.93 E-value=1.2 Score=52.99 Aligned_cols=156 Identities=13% Similarity=0.082 Sum_probs=83.9
Q ss_pred CCcc-HHHHHHHHhhcccccc---CCccccchhh-hhHHHHHHHHhccchhHHHHHHHhHhccc------ccccC--CC-
Q psy11343 817 DSFP-LFQILNEYLRADENLK---NGRFHQHLRE-YFAPLVVRYVDLMESSIAQSIHKGFEKEK------WEIKG--NG- 882 (1150)
Q Consensus 817 DsFk-VkwLyNeYvr~lp~lK---n~vfe~~L~~-wFePfV~rWLDenEess~qfL~~AfErDK------wep~k--nG- 882 (1150)
+.+. |.| .|.|-..+-+.. .......+++ -=..++..|+......+.+|+.++++.|+ -+|.. +|
T Consensus 166 ~ll~ll~W-~~~Y~~~m~~~~l~~~~~l~plL~~~~~~~L~~~Yl~~~~~~~~eW~~n~l~~E~~~w~~~~~Pe~~~dg~ 244 (566)
T PF06046_consen 166 DLLSLLSW-VNTYPSIMGHPDLAIKEQLGPLLPDEKLEELEDDYLSRIQKKMKEWMDNILEQEVKDWSEEKEPEEDEDGY 244 (566)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-S--EE-TTS-
T ss_pred HHhhheec-hhhChHhhcCCcccchhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCC
Confidence 3344 667 777765333322 1222223332 22778899999999999999999999986 45552 46
Q ss_pred --ccchHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccccccccccchh
Q psy11343 883 --CATSEDLFWKLDALQSFIRDLHWPDQEFNQHLEQRLKLMACDMIESCIMRTESAFQSWLKKGVSFVSTDYIIHSEMCA 960 (1150)
Q Consensus 883 --qqTSEDLF~qLnqlqeFIrkLeWPDpef~ahlm~RfaktISkmIeqYadrt~~~F~s~l~Ke~~~~stD~ilP~e~Ci 960 (1150)
.+...|+|.=+++-.+.. -++-...+....+.-++..+.+-..+..+...+.|..+..-...- ...+-+ .-+|.
T Consensus 245 y~t~~~~difqmi~qql~va--~~~l~~~v~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-eyliA 320 (566)
T PF06046_consen 245 YHTPLPVDIFQMINQQLDVA--SESLQGKVLQRVLEELANFLKSYQDAWQEFKEEHFKDRSSVKPKE-NPPGYL-EYLIA 320 (566)
T ss_dssp EE-HHHHHHHHHHHHHHHHH--HHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---S-HH-HHHHH
T ss_pred eecCcHHHHHHHHHHHHHHH--HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-cccchH-HHHHH
Confidence 234669999999999999 455566666666666666655555566666666666555431000 001111 23588
Q ss_pred hhhhHHHHhhhhhhhhh
Q psy11343 961 MINIIADAKNQSLKLCA 977 (1150)
Q Consensus 961 mmNniqqlRvQleKlc~ 977 (1150)
.+||...++..++++..
T Consensus 321 ~~N~~~~~~~~~~~l~~ 337 (566)
T PF06046_consen 321 VANNCLRCRDYVESLEQ 337 (566)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 89999999996555544
No 52
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=93.77 E-value=0.31 Score=49.51 Aligned_cols=104 Identities=19% Similarity=0.240 Sum_probs=73.8
Q ss_pred EEEEEEEeeccccccCCCCeEEEEEEeeCC----cccccccccc-cCCcccccCcccccc-----------c---c--ce
Q psy11343 29 QLEVIVMEVKGLKSLAPNRIVYCTMEVEGG----EKLQTDQAEA-SKPMWDTQADFSTNQ-----------P---L--PA 87 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~~vyctme~eg~----~kl~td~~ea-~~p~w~tq~df~t~~-----------p---l--p~ 87 (1150)
+|.|.|++.+||......---||.+.+.|+ .+.+|.-... ..|.|+..-.|.-.. | + -.
T Consensus 1 kL~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd04010 1 KLSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE 80 (148)
T ss_pred CEEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence 478999999999872212346999999875 5667877765 589999999887641 1 1 24
Q ss_pred eEEEEeeccCCcccccccccceEEeecCCCCC---CCccccccccCCCCCC
Q psy11343 88 IKVKLFTENPGMLALEDKELGKVILRPTPLSS---KAPEWHKMLVPKNCAD 135 (1150)
Q Consensus 88 ~kvkl~~e~~g~l~~edkelg~v~~~p~~~~~---~~~~~~~m~~~k~~~d 135 (1150)
+.|.++....+ -.|.-||+|.|.-..... ..+.||.+...++..|
T Consensus 81 L~i~V~d~~~~---~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~ 128 (148)
T cd04010 81 LRVDLWHASMG---GGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKST 128 (148)
T ss_pred EEEEEEcCCCC---CCCceeEEEEEecccccccCCcCcceeecCCcccccC
Confidence 66677766543 367789999996554443 4789999877766653
No 53
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=93.76 E-value=0.24 Score=48.18 Aligned_cols=107 Identities=16% Similarity=0.289 Sum_probs=73.1
Q ss_pred eEEEE-----EEEEEEEeeccccccCC--CCeEEEEEEee-CCc---ccccccccc-cCCcccccCccccc-cccc--ee
Q psy11343 24 ITLNF-----QLEVIVMEVKGLKSLAP--NRIVYCTMEVE-GGE---KLQTDQAEA-SKPMWDTQADFSTN-QPLP--AI 88 (1150)
Q Consensus 24 ~~l~f-----~lev~v~ev~~l~~~~~--~~~vyctme~e-g~~---kl~td~~ea-~~p~w~tq~df~t~-~plp--~~ 88 (1150)
+.|.| +|.|.|++.+||+.... .--.||.+.+- ||+ +-+|..... .-|.|+..-.|.-. ..+. .+
T Consensus 6 ~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l 85 (136)
T cd08405 6 LSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTL 85 (136)
T ss_pred EEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEE
Confidence 44555 69999999999986432 23368888874 333 345665544 57999998888632 2333 47
Q ss_pred EEEEeeccCCcccccccccceEEeecCCCCCCCccccccccCCCC
Q psy11343 89 KVKLFTENPGMLALEDKELGKVILRPTPLSSKAPEWHKMLVPKNC 133 (1150)
Q Consensus 89 kvkl~~e~~g~l~~edkelg~v~~~p~~~~~~~~~~~~m~~~k~~ 133 (1150)
.|.++.... + -.|.-||++.+-....+.....|+.|.-+.+.
T Consensus 86 ~~~v~d~~~--~-~~~~~lG~~~i~~~~~~~~~~~w~~~~~~~~~ 127 (136)
T cd08405 86 IITVMDKDR--L-SRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQ 127 (136)
T ss_pred EEEEEECCC--C-CCCcEeEEEEECCccCCchHHHHHHHHhCCCC
Confidence 788887653 2 24567999999777667778888888655443
No 54
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=93.70 E-value=0.39 Score=49.50 Aligned_cols=118 Identities=19% Similarity=0.358 Sum_probs=80.9
Q ss_pred EEEEEEEeecccc--ccC-C-CCeEEEEEEe----eCCcccccccccc-cCCcccccCccccccc-------cc--eeEE
Q psy11343 29 QLEVIVMEVKGLK--SLA-P-NRIVYCTMEV----EGGEKLQTDQAEA-SKPMWDTQADFSTNQP-------LP--AIKV 90 (1150)
Q Consensus 29 ~lev~v~ev~~l~--~~~-~-~~~vyctme~----eg~~kl~td~~ea-~~p~w~tq~df~t~~p-------lp--~~kv 90 (1150)
..|+.|+-..|++ +-- + .--.|..+|+ ++..+.+|.-... .-|.|+...-|.-+.. ++ .+++
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~ 82 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKF 82 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence 3688889898865 322 2 2457999998 7778999987766 6799999988875433 22 4777
Q ss_pred EEeeccCCcccccccccceEEeecCCC--CCCCccccccc-cCCCCCCcCceEEEEEEecCCCC
Q psy11343 91 KLFTENPGMLALEDKELGKVILRPTPL--SSKAPEWHKML-VPKNCADQDLKIKIACRMEKPLN 151 (1150)
Q Consensus 91 kl~~e~~g~l~~edkelg~v~~~p~~~--~~~~~~~~~m~-~~k~~~d~~l~i~~~~~m~kp~n 151 (1150)
.+|... .+.-.|+-+|++.+.=.++ .....+|..+. --|.+.. ++.+.|||.-|.-
T Consensus 83 ~V~d~~--~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg---~l~v~ir~r~p~~ 141 (155)
T cd08690 83 EVYHKG--GFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGG---KLEVKVRLREPLT 141 (155)
T ss_pred EEEeCC--CcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCC---EEEEEEEecCCCc
Confidence 777654 3323689999999975555 66778887643 4443333 5666677777754
No 55
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=93.39 E-value=0.57 Score=44.94 Aligned_cols=108 Identities=12% Similarity=0.146 Sum_probs=74.4
Q ss_pred EEEeeccccccCCCCeEEEEEEeeCCcccccccccc-cCCcccccCccccccc---cceeEEEEeeccCCcccccccccc
Q psy11343 33 IVMEVKGLKSLAPNRIVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQP---LPAIKVKLFTENPGMLALEDKELG 108 (1150)
Q Consensus 33 ~v~ev~~l~~~~~~~~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~p---lp~~kvkl~~e~~g~l~~edkelg 108 (1150)
+|+++++|+..-..--.||.+.+ ||.+.+|..... ..|.|+..-.|.-.++ --.+.|.++..... ..|.-+|
T Consensus 1 ~vi~a~~L~~~~g~~Dpyv~v~~-~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~---~~d~~iG 76 (127)
T cd08373 1 LVVSLKNLPGLKGKGDRIAKVTF-RGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKV---GRNRLIG 76 (127)
T ss_pred CeEEeeCCcccCCCCCCEEEEEE-CCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCC---CCCceEE
Confidence 47788888873333446999998 467889988765 5999999988887665 34677888877543 3567899
Q ss_pred eEEeec--CCCCCCCccccccccCCCCCCcCceEEEEEE
Q psy11343 109 KVILRP--TPLSSKAPEWHKMLVPKNCADQDLKIKIACR 145 (1150)
Q Consensus 109 ~v~~~p--~~~~~~~~~~~~m~~~k~~~d~~l~i~~~~~ 145 (1150)
.+.+.. -......+.|+.+.-+++.+. .-+|.+.+.
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~-~~~l~l~~~ 114 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLDSNGRPT-GATISLEVS 114 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcCCCCCcc-cEEEEEEEE
Confidence 999863 345567788988765655442 124444443
No 56
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=93.34 E-value=0.31 Score=46.90 Aligned_cols=102 Identities=19% Similarity=0.352 Sum_probs=72.8
Q ss_pred EEEEEEEeeccccccCCCCe--EEEEEEeeC----Ccccccccccc-cCCcccccCccccccc--cceeEEEEeeccCCc
Q psy11343 29 QLEVIVMEVKGLKSLAPNRI--VYCTMEVEG----GEKLQTDQAEA-SKPMWDTQADFSTNQP--LPAIKVKLFTENPGM 99 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~~--vyctme~eg----~~kl~td~~ea-~~p~w~tq~df~t~~p--lp~~kvkl~~e~~g~ 99 (1150)
.|.|.|++.++|.....+.. -||++.+.+ ..+-+|...+. .-|.|+..-.|.-..+ -..+.|.++....
T Consensus 14 ~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~-- 91 (131)
T cd04026 14 KLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR-- 91 (131)
T ss_pred EEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC--
Confidence 35688999999987655543 599999964 24566766554 5899999988875543 2468888887653
Q ss_pred ccccccccceEEeecCCCCC-CCccccccccCCCC
Q psy11343 100 LALEDKELGKVILRPTPLSS-KAPEWHKMLVPKNC 133 (1150)
Q Consensus 100 l~~edkelg~v~~~p~~~~~-~~~~~~~m~~~k~~ 133 (1150)
...|..+|.+.+....... ..+.||.+.-+|+.
T Consensus 92 -~~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~~~~ 125 (131)
T cd04026 92 -TTRNDFMGSLSFGVSELIKMPVDGWYKLLNQEEG 125 (131)
T ss_pred -CCCcceeEEEEEeHHHhCcCccCceEECcCcccc
Confidence 1378899999997444332 56789998777654
No 57
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=92.88 E-value=0.093 Score=48.28 Aligned_cols=52 Identities=25% Similarity=0.572 Sum_probs=39.9
Q ss_pred cceeeeechh---HHHhhhceeEEEEEeeceehhhcccccc-CCCCccccccccceeeecc
Q psy11343 155 CGYLFAYGKS---TWRKWKKRYFVLVQVSQYTFAMCSFKEK-KSDPSEFMQLDGYTVDYIE 211 (1150)
Q Consensus 155 ~gy~~~~g~~---~~kkwk~r~~~lvqvsqytfa~cs~~e~-ks~p~e~~ql~g~tvdy~~ 211 (1150)
-|||+--|+. .+|.||||||||-.= .++-|+.+ .+.|...+.|+|+||....
T Consensus 3 ~GwL~kk~~~~g~~~k~WkkrwfvL~~~-----~L~yyk~~~~~~~~~~I~L~~~~v~~~~ 58 (96)
T cd01260 3 DGWLWKRKKPGGFMGQKWARRWFVLKGT-----TLYWYRSKQDEKAEGLIFLSGFTIESAK 58 (96)
T ss_pred eeEEEEecCCCCccccCceeEEEEEECC-----EEEEECCCCCCccceEEEccCCEEEEch
Confidence 4899887543 789999999999752 34445444 4789999999999998764
No 58
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=92.86 E-value=0.64 Score=44.25 Aligned_cols=93 Identities=17% Similarity=0.320 Sum_probs=64.2
Q ss_pred EEEEEEEeeccccccCCC--CeEEEEEEeeCCc----ccccccccc-cCCcccccCccccc--cccc--eeEEEEeeccC
Q psy11343 29 QLEVIVMEVKGLKSLAPN--RIVYCTMEVEGGE----KLQTDQAEA-SKPMWDTQADFSTN--QPLP--AIKVKLFTENP 97 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~--~~vyctme~eg~~----kl~td~~ea-~~p~w~tq~df~t~--~plp--~~kvkl~~e~~ 97 (1150)
+|.|.|.+++||...... --.||...+-++. +.+|..... ..|.|+..-.|..- .-+. .++|.++....
T Consensus 16 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~ 95 (123)
T cd04035 16 ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR 95 (123)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC
Confidence 799999999999765432 2489999986543 456666543 57999999887411 1122 68899998865
Q ss_pred CcccccccccceEEeecCCCCCCCcccc
Q psy11343 98 GMLALEDKELGKVILRPTPLSSKAPEWH 125 (1150)
Q Consensus 98 g~l~~edkelg~v~~~p~~~~~~~~~~~ 125 (1150)
. .|.-+|.+.+.....-.....|+
T Consensus 96 ~----~~~~iG~~~i~l~~l~~~~~~~~ 119 (123)
T cd04035 96 F----GNDFLGETRIPLKKLKPNQTKQF 119 (123)
T ss_pred c----CCeeEEEEEEEcccCCCCcceEe
Confidence 3 67889999887655544444433
No 59
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=92.73 E-value=0.082 Score=50.27 Aligned_cols=52 Identities=25% Similarity=0.332 Sum_probs=37.0
Q ss_pred ccceeeeechhHHHhhhceeEEEEEeeceehhhcccccc-CCCCccccccc----cceeeec
Q psy11343 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEK-KSDPSEFMQLD----GYTVDYI 210 (1150)
Q Consensus 154 ~~gy~~~~g~~~~kkwk~r~~~lvqvsqytfa~cs~~e~-ks~p~e~~ql~----g~tvdy~ 210 (1150)
+.|||.=.|...+|.||||||||-.-. ++-|+.+ ...|.-.+.|+ |++|.-.
T Consensus 1 KeG~L~K~g~~~~k~wkkRwFvL~~~~-----L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~ 57 (103)
T cd01251 1 KEGFMEKTGPKHTEGFKKRWFTLDDRR-----LMYFKDPLDAFAKGEVFLGSQEDGYEVREG 57 (103)
T ss_pred CceeEEecCCCCCCCceeEEEEEeCCE-----EEEECCCCCcCcCcEEEeeccccceeEecc
Confidence 479999999887899999999997543 3344443 35666666664 6777543
No 60
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=92.59 E-value=0.45 Score=47.13 Aligned_cols=99 Identities=17% Similarity=0.217 Sum_probs=70.6
Q ss_pred EEEEEEeeccccccCCCC--eEEEEEEeeC---Ccccccccccc-cCCcccccCccccccc----------------cce
Q psy11343 30 LEVIVMEVKGLKSLAPNR--IVYCTMEVEG---GEKLQTDQAEA-SKPMWDTQADFSTNQP----------------LPA 87 (1150)
Q Consensus 30 lev~v~ev~~l~~~~~~~--~vyctme~eg---~~kl~td~~ea-~~p~w~tq~df~t~~p----------------lp~ 87 (1150)
|.|.|++.+||... .+. -.|+++-+.+ +.+.+|..... .-|.|+..-.|.-..+ -..
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 56889999999877 332 3588998886 67788887774 5899999888876554 125
Q ss_pred eEEEEeeccCCcccccccccceEEeecCC--CCCCCccccccccCCC
Q psy11343 88 IKVKLFTENPGMLALEDKELGKVILRPTP--LSSKAPEWHKMLVPKN 132 (1150)
Q Consensus 88 ~kvkl~~e~~g~l~~edkelg~v~~~p~~--~~~~~~~~~~m~~~k~ 132 (1150)
+.|.++..... -.|.-+|++.+.-.. .....+.||.+...++
T Consensus 80 l~i~V~d~~~~---~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~ 123 (137)
T cd08675 80 LRVELWHASMV---SGDDFLGEVRIPLQGLQQAGSHQAWYFLQPREA 123 (137)
T ss_pred EEEEEEcCCcC---cCCcEEEEEEEehhhccCCCcccceEecCCcCC
Confidence 77777776643 246679999985332 4456799999755543
No 61
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=92.55 E-value=1.1 Score=44.60 Aligned_cols=81 Identities=22% Similarity=0.415 Sum_probs=62.8
Q ss_pred EEEEEEEeeccccccCCCC--eEEEEEEeeCCcccccccccc-cCCcccccCcccccccc-ceeEEEEeeccCCcccccc
Q psy11343 29 QLEVIVMEVKGLKSLAPNR--IVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQPL-PAIKVKLFTENPGMLALED 104 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~--~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~pl-p~~kvkl~~e~~g~l~~ed 104 (1150)
.|.|.|++.+||+....+. --||.+.+ |+.+..|..... .-|.|+..-.|..+.|. ..+.|.+|.+... -.|
T Consensus 16 ~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~-~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~---~~d 91 (136)
T cd08375 16 RLMVVIVEGRDLKPCNSNGKSDPYCEVSM-GSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFF---SPD 91 (136)
T ss_pred EEEEEEEEeeCCCCCCCCCCcCcEEEEEE-CCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCC---CCC
Confidence 6899999999998764332 25999988 678888887653 57999999999887654 4689999988642 356
Q ss_pred cccceEEee
Q psy11343 105 KELGKVILR 113 (1150)
Q Consensus 105 kelg~v~~~ 113 (1150)
.-||++.+.
T Consensus 92 ~~lG~~~i~ 100 (136)
T cd08375 92 DFLGRTEIR 100 (136)
T ss_pred CeeEEEEEE
Confidence 789999885
No 62
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=92.54 E-value=0.96 Score=42.67 Aligned_cols=96 Identities=16% Similarity=0.303 Sum_probs=65.1
Q ss_pred EEEEEEEeeccccccC-C--CCeEEEEEEeeCC----cccccccccc-cCCcccccCccccccc---cceeEEEEeeccC
Q psy11343 29 QLEVIVMEVKGLKSLA-P--NRIVYCTMEVEGG----EKLQTDQAEA-SKPMWDTQADFSTNQP---LPAIKVKLFTENP 97 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~-~--~~~vyctme~eg~----~kl~td~~ea-~~p~w~tq~df~t~~p---lp~~kvkl~~e~~ 97 (1150)
.|.|.|++.+||.... . .--.||.+.+-++ .+-+|..... .-|.|++.-.|.-..+ --.++|.++....
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 94 (123)
T cd08521 15 SLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR 94 (123)
T ss_pred EEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 6899999999998654 2 2236999988433 3456766654 5799999988864331 2367888886543
Q ss_pred CcccccccccceEEeecCCC--CCCCcccccc
Q psy11343 98 GMLALEDKELGKVILRPTPL--SSKAPEWHKM 127 (1150)
Q Consensus 98 g~l~~edkelg~v~~~p~~~--~~~~~~~~~m 127 (1150)
+ -.|.-+|.+.+.-... +.....||++
T Consensus 95 --~-~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 95 --F-GRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred --C-cCCceeeEEEEecccccccCCCccEEEC
Confidence 2 2467899999864333 5556778863
No 63
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=92.53 E-value=0.74 Score=43.52 Aligned_cols=96 Identities=22% Similarity=0.403 Sum_probs=67.8
Q ss_pred EEEEEEEeeccccccCCC--CeEEEEEEeeCC----ccccccccc-ccCCcccccCcccccc--cc--ceeEEEEeeccC
Q psy11343 29 QLEVIVMEVKGLKSLAPN--RIVYCTMEVEGG----EKLQTDQAE-ASKPMWDTQADFSTNQ--PL--PAIKVKLFTENP 97 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~--~~vyctme~eg~----~kl~td~~e-a~~p~w~tq~df~t~~--pl--p~~kvkl~~e~~ 97 (1150)
+|.|.|++.+||+....+ --.||.+.+.++ .+.+|.... ..-|.|+..-.|.... .+ ..+.|.++....
T Consensus 17 ~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~ 96 (125)
T cd04031 17 QLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDR 96 (125)
T ss_pred EEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCC
Confidence 478999999999766543 236999999752 566787765 4789999988886322 22 468888998765
Q ss_pred CcccccccccceEEeecCC-CCCCCcccccc
Q psy11343 98 GMLALEDKELGKVILRPTP-LSSKAPEWHKM 127 (1150)
Q Consensus 98 g~l~~edkelg~v~~~p~~-~~~~~~~~~~m 127 (1150)
. -.|.-||++.+.-.. .....+.||.+
T Consensus 97 ~---~~~~~iG~~~i~l~~~~~~~~~~W~~L 124 (125)
T cd04031 97 D---GENDFLGEVVIDLADALLDDEPHWYPL 124 (125)
T ss_pred C---CCCcEeeEEEEecccccccCCcceEEC
Confidence 3 357789999885332 33456789875
No 64
>PF06292 DUF1041: Domain of Unknown Function (DUF1041); InterPro: IPR010439 This entry represents Calcium-dependent secretion activators that are involved in the exocytosis of vesicles filled with neurotransmitters and neuropeptides. They also may specifically mediate the Ca2+-dependent exocytosis of large dense-core vesicles (DCVs) and other dense-core vesicles by acting as a PtdIns(4,5)P2-binding protein that acts at prefusion step following ATP-dependent priming and participates in DCVs-membrane fusion []. However, it probably also participates in small clear synaptic vesicles (SVs) exocytosis and it is unclear whether its function is related to Ca2+ triggering []. This protein is often found in tandem repeats and co-occur with C2 domains IPR000008 from INTERPRO, Protein kinase C, phorbol ester/diacylglycerol binding regions IPR002219 from INTERPRO and PH domains IPR001849 from INTERPRO.
Probab=92.44 E-value=0.22 Score=48.98 Aligned_cols=18 Identities=11% Similarity=0.073 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy11343 713 PEEVREVIKKCLETAALI 730 (1150)
Q Consensus 713 pevVrecVKaCLesAa~~ 730 (1150)
++|||+|+++|+.++|.-
T Consensus 1 ~~VVr~Cle~aa~~nY~~ 18 (106)
T PF06292_consen 1 SNVVRKCLEAAALSNYQR 18 (106)
T ss_pred ChHHHHHHHHHHHhhHHH
Confidence 368999999999999943
No 65
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=92.31 E-value=0.57 Score=43.79 Aligned_cols=84 Identities=19% Similarity=0.336 Sum_probs=59.9
Q ss_pred EEEEEEeeccccccCCCCe--EEEEEEeeCCcccccccccc-cCCcccccCcccccc-ccceeEEEEeeccCCccccccc
Q psy11343 30 LEVIVMEVKGLKSLAPNRI--VYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQ-PLPAIKVKLFTENPGMLALEDK 105 (1150)
Q Consensus 30 lev~v~ev~~l~~~~~~~~--vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~-plp~~kvkl~~e~~g~l~~edk 105 (1150)
|+|.|++.+||.....+.. -||++.+.|...-+|..... ..|.|+..-.|.-.. +--.+.+.+|..... -.|.
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~---~~~~ 77 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRG---GKDD 77 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCC---CCCC
Confidence 5788999999987654332 59999997645457766544 589999988887544 334577888876532 3678
Q ss_pred ccceEEeecCC
Q psy11343 106 ELGKVILRPTP 116 (1150)
Q Consensus 106 elg~v~~~p~~ 116 (1150)
-+|++.+.-..
T Consensus 78 ~iG~~~~~l~~ 88 (115)
T cd04040 78 LLGSAYIDLSD 88 (115)
T ss_pred ceEEEEEEHHH
Confidence 99999986443
No 66
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.21 E-value=0.063 Score=52.02 Aligned_cols=29 Identities=24% Similarity=0.724 Sum_probs=23.1
Q ss_pred ccceeeeechh--------HHHhhhceeEEEEEeece
Q psy11343 154 HCGYLFAYGKS--------TWRKWKKRYFVLVQVSQY 182 (1150)
Q Consensus 154 ~~gy~~~~g~~--------~~kkwk~r~~~lvqvsqy 182 (1150)
+||||+-.|-. .+|.||||+|||=+-.-+
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L 37 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLL 37 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEE
Confidence 59999977654 599999999999755443
No 67
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=91.77 E-value=0.67 Score=39.39 Aligned_cols=93 Identities=20% Similarity=0.393 Sum_probs=65.7
Q ss_pred EEEEEEeecccccc--CCCCeEEEEEEeeCCcccccccccc-cCCcccccCcccccc-ccceeEEEEeeccCCccccccc
Q psy11343 30 LEVIVMEVKGLKSL--APNRIVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQ-PLPAIKVKLFTENPGMLALEDK 105 (1150)
Q Consensus 30 lev~v~ev~~l~~~--~~~~~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~-plp~~kvkl~~e~~g~l~~edk 105 (1150)
|.|.|++.+||... ...--.||++.+.+...-+|...+. ..|.|+..-.|.-.. .-+.+.+.++..+..- .++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~---~~~ 77 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS---KDD 77 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---CCc
Confidence 46789999998642 2234479999999767778877766 689998877776555 4578888888877642 568
Q ss_pred ccceEEeecCCC---CCCCcccc
Q psy11343 106 ELGKVILRPTPL---SSKAPEWH 125 (1150)
Q Consensus 106 elg~v~~~p~~~---~~~~~~~~ 125 (1150)
-+|++.+..... ......|+
T Consensus 78 ~ig~~~~~l~~l~~~~~~~~~~~ 100 (102)
T cd00030 78 FLGEVEIPLSELLDSGKEGELWL 100 (102)
T ss_pred eeEEEEEeHHHhhhcCCcCccee
Confidence 888888764442 24444454
No 68
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=91.76 E-value=0.11 Score=48.95 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=39.3
Q ss_pred ccceeeeechhHHHhhhceeEEEEEeeceehhhccccccC-CCCccccccccceeeeccC
Q psy11343 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKK-SDPSEFMQLDGYTVDYIEP 212 (1150)
Q Consensus 154 ~~gy~~~~g~~~~kkwk~r~~~lvqvsqytfa~cs~~e~k-s~p~e~~ql~g~tvdy~~~ 212 (1150)
+-|||.-.|.. ++.||||||||= -+ .++-|+..+ .+|...+.|.+-+|...+.
T Consensus 4 k~G~L~Kkg~~-~k~WkkRwfvL~-~~----~L~yyk~~~~~~~~~~I~L~~~~v~~~~~ 57 (100)
T cd01233 4 KKGYLNFPEET-NSGWTRRFVVVR-RP----YLHIYRSDKDPVERGVINLSTARVEHSED 57 (100)
T ss_pred eeEEEEeeCCC-CCCcEEEEEEEE-CC----EEEEEccCCCccEeeEEEecccEEEEccc
Confidence 34999999985 599999999994 22 344455544 7888899999877775533
No 69
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=91.70 E-value=0.59 Score=45.87 Aligned_cols=102 Identities=15% Similarity=0.309 Sum_probs=71.4
Q ss_pred EEEEEEEeeccccccCCC--CeEEEEEEeeCCc----ccccccccc-cCCcccccCcccccc-ccc--eeEEEEeeccCC
Q psy11343 29 QLEVIVMEVKGLKSLAPN--RIVYCTMEVEGGE----KLQTDQAEA-SKPMWDTQADFSTNQ-PLP--AIKVKLFTENPG 98 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~--~~vyctme~eg~~----kl~td~~ea-~~p~w~tq~df~t~~-plp--~~kvkl~~e~~g 98 (1150)
+|+|.|++.++|+....+ ---||.+.+-+|. +..|..... .-|.|+..-.|.-.. .+. .+.|.+|....+
T Consensus 15 ~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~ 94 (135)
T cd08410 15 RLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVK 94 (135)
T ss_pred eEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence 689999999999876433 3469999975443 235554544 479999998887533 244 377888876543
Q ss_pred cccccccccceEEeecCCCCC-CCccccccccCCCC
Q psy11343 99 MLALEDKELGKVILRPTPLSS-KAPEWHKMLVPKNC 133 (1150)
Q Consensus 99 ~l~~edkelg~v~~~p~~~~~-~~~~~~~m~~~k~~ 133 (1150)
..|.=+|.+.|.+-...+ ...-|+.|.-+.+.
T Consensus 95 ---~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~ 127 (135)
T cd08410 95 ---SSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRT 127 (135)
T ss_pred ---CCCcEEEEEEEcCccCCchHHHHHHHHHhCCCC
Confidence 367789999998765544 56789999766554
No 70
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=91.63 E-value=0.46 Score=46.18 Aligned_cols=102 Identities=20% Similarity=0.368 Sum_probs=70.9
Q ss_pred EEEEEEEeeccccccCCCC--eEEEEEEeeC-Cc---ccccccccc-cCCcccccCccccccc-cc--eeEEEEeeccCC
Q psy11343 29 QLEVIVMEVKGLKSLAPNR--IVYCTMEVEG-GE---KLQTDQAEA-SKPMWDTQADFSTNQP-LP--AIKVKLFTENPG 98 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~--~vyctme~eg-~~---kl~td~~ea-~~p~w~tq~df~t~~p-lp--~~kvkl~~e~~g 98 (1150)
+|.|.|++.+||.....+. --||.+.+.+ |. +-+|...+. .-|.|+..-.|.-..+ +. .+.|.++....
T Consensus 16 ~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~- 94 (136)
T cd08402 16 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR- 94 (136)
T ss_pred eEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC-
Confidence 5899999999998765443 3599999864 32 345765554 4799998877764322 22 57888887664
Q ss_pred cccccccccceEEeecCCCCCCCccccccccCCCC
Q psy11343 99 MLALEDKELGKVILRPTPLSSKAPEWHKMLVPKNC 133 (1150)
Q Consensus 99 ~l~~edkelg~v~~~p~~~~~~~~~~~~m~~~k~~ 133 (1150)
+ -.|.-+|.+.+-....+.....|+.|.-.++-
T Consensus 95 -~-~~~~~iG~~~i~~~~~~~~~~~W~~~~~~~~~ 127 (136)
T cd08402 95 -I-GKNDPIGKVVLGCNATGAELRHWSDMLASPRR 127 (136)
T ss_pred -C-CCCceeEEEEECCccCChHHHHHHHHHhCCCC
Confidence 1 35678999999877666666778888655443
No 71
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=91.61 E-value=1.6 Score=41.58 Aligned_cols=111 Identities=15% Similarity=0.232 Sum_probs=73.4
Q ss_pred EEEEEEEeeccccccCCCCe--EEEEEEeeCC--ccccccccc-ccCCcccccCccccccc-cceeEEEEeeccCCcccc
Q psy11343 29 QLEVIVMEVKGLKSLAPNRI--VYCTMEVEGG--EKLQTDQAE-ASKPMWDTQADFSTNQP-LPAIKVKLFTENPGMLAL 102 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~~--vyctme~eg~--~kl~td~~e-a~~p~w~tq~df~t~~p-lp~~kvkl~~e~~g~l~~ 102 (1150)
.|.|.|.+.+||+....+.. .||.+-+.++ .+.+|.... ..-|.|+..-.|.-..+ -..+++.+|-.... -
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~---~ 78 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFV---G 78 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCC---C
Confidence 46788999999986544432 6998876544 344665543 36899999988887664 45688888877542 2
Q ss_pred cccccceEEeecCC----C-CCCCccccccccCCCCCCcCceEEEEEEec
Q psy11343 103 EDKELGKVILRPTP----L-SSKAPEWHKMLVPKNCADQDLKIKIACRME 147 (1150)
Q Consensus 103 edkelg~v~~~p~~----~-~~~~~~~~~m~~~k~~~d~~l~i~~~~~m~ 147 (1150)
.|.-+|++.+.-.+ . +.....|+.+. | .+.++++|++-=|
T Consensus 79 ~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~-~----~g~i~l~~~~~~~ 123 (126)
T cd04043 79 KHDLCGRASLKLDPKRFGDDGLPREIWLDLD-T----QGRLLLRVSMEGE 123 (126)
T ss_pred CCceEEEEEEecCHHHcCCCCCCceEEEEcC-C----CCeEEEEEEEeee
Confidence 57789999886221 1 34556788864 3 2356666665433
No 72
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=91.41 E-value=0.85 Score=43.37 Aligned_cols=98 Identities=20% Similarity=0.341 Sum_probs=68.1
Q ss_pred EEEEEEEeeccccccCCCC--eEEEEEEeeCC----ccccccccc-ccCCcccccCccccccc-c--ceeEEEEeeccCC
Q psy11343 29 QLEVIVMEVKGLKSLAPNR--IVYCTMEVEGG----EKLQTDQAE-ASKPMWDTQADFSTNQP-L--PAIKVKLFTENPG 98 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~--~vyctme~eg~----~kl~td~~e-a~~p~w~tq~df~t~~p-l--p~~kvkl~~e~~g 98 (1150)
+|.|.|++.+||.....+. -.||.+.+-++ .+.+|.... ..-|.|+..-.|.-..+ + -.+.|.++....
T Consensus 17 ~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~- 95 (127)
T cd04030 17 KLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKS- 95 (127)
T ss_pred EEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCc-
Confidence 5889999999998776533 35999888542 455666543 46899999888864332 2 357777877654
Q ss_pred cccccccccceEEeecC--CCCCCCcccccc
Q psy11343 99 MLALEDKELGKVILRPT--PLSSKAPEWHKM 127 (1150)
Q Consensus 99 ~l~~edkelg~v~~~p~--~~~~~~~~~~~m 127 (1150)
.....|.-||.+.+.-. ......+.||++
T Consensus 96 ~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 96 FLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred ccCCCCceEEEEEEecccccccCCccceEEC
Confidence 22356888999998643 344677889976
No 73
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=91.26 E-value=0.5 Score=45.83 Aligned_cols=102 Identities=14% Similarity=0.278 Sum_probs=70.1
Q ss_pred EEEEEEEeeccccccCCCC--eEEEEEEee-CCc---cccccccc-ccCCcccccCccccc-cccc--eeEEEEeeccCC
Q psy11343 29 QLEVIVMEVKGLKSLAPNR--IVYCTMEVE-GGE---KLQTDQAE-ASKPMWDTQADFSTN-QPLP--AIKVKLFTENPG 98 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~--~vyctme~e-g~~---kl~td~~e-a~~p~w~tq~df~t~-~plp--~~kvkl~~e~~g 98 (1150)
.|.|.|++.+||.....+. -.||.+.+- +|. +-+|.... ...|.|+..-.|.-. ..+. .+++.++.....
T Consensus 15 ~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~ 94 (134)
T cd08403 15 RLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRV 94 (134)
T ss_pred EEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCC
Confidence 4899999999998765432 469999984 332 34666443 358999998888532 2233 478888876531
Q ss_pred cccccccccceEEeecCCCCCCCccccccccCCCC
Q psy11343 99 MLALEDKELGKVILRPTPLSSKAPEWHKMLVPKNC 133 (1150)
Q Consensus 99 ~l~~edkelg~v~~~p~~~~~~~~~~~~m~~~k~~ 133 (1150)
-.|.-+|++.+.+...+...+.|..|.-+++.
T Consensus 95 ---~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~~ 126 (134)
T cd08403 95 ---GHNELIGVCRVGPNADGQGREHWNEMLANPRK 126 (134)
T ss_pred ---CCCceeEEEEECCCCCCchHHHHHHHHHCCCC
Confidence 23677999999877656666779888655543
No 74
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=91.00 E-value=0.14 Score=48.00 Aligned_cols=45 Identities=22% Similarity=0.345 Sum_probs=30.1
Q ss_pred cceeeeechhHHHhhhceeEEEEEeeceehhhccccccCCC----Cccccccccce
Q psy11343 155 CGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSD----PSEFMQLDGYT 206 (1150)
Q Consensus 155 ~gy~~~~g~~~~kkwk~r~~~lvqvsqytfa~cs~~e~ks~----p~e~~ql~g~t 206 (1150)
||||+=.|. .+|-||+||||| . -...+|-..+.+ |...+-|.+-+
T Consensus 2 ~G~L~K~~~-~~k~Wk~RwFvL-~-----~g~L~Yyk~~~~~~~~~~G~I~L~~~~ 50 (91)
T cd01247 2 NGVLSKWTN-YINGWQDRYFVL-K-----EGNLSYYKSEAEKSHGCRGSIFLKKAI 50 (91)
T ss_pred ceEEEEecc-ccCCCceEEEEE-E-----CCEEEEEecCccCcCCCcEEEECcccE
Confidence 899999995 799999999999 3 133333333332 45566666543
No 75
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=90.93 E-value=0.82 Score=45.18 Aligned_cols=100 Identities=21% Similarity=0.431 Sum_probs=70.0
Q ss_pred EEEEEEEeeccccccCCC-CeEEEEEEeeCC----cccccccccc-cCCcccccCccccc-cccce--eEEEEeeccCCc
Q psy11343 29 QLEVIVMEVKGLKSLAPN-RIVYCTMEVEGG----EKLQTDQAEA-SKPMWDTQADFSTN-QPLPA--IKVKLFTENPGM 99 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~-~~vyctme~eg~----~kl~td~~ea-~~p~w~tq~df~t~-~plp~--~kvkl~~e~~g~ 99 (1150)
+|.|.|+++++|..+..+ .-.|+.+-+-++ .+.+|..... .-|.|+..=.|.-. .+|+. +.|.++....
T Consensus 16 ~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~-- 93 (137)
T cd08409 16 RLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG-- 93 (137)
T ss_pred eEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC--
Confidence 489999999999876422 458999988765 3446766643 68999998777543 45664 6666766655
Q ss_pred ccccccccceEEeecCC--CCCCCccccccccCC
Q psy11343 100 LALEDKELGKVILRPTP--LSSKAPEWHKMLVPK 131 (1150)
Q Consensus 100 l~~edkelg~v~~~p~~--~~~~~~~~~~m~~~k 131 (1150)
+ ..|.-||.|.|-|-. .+...--|+.|.-..
T Consensus 94 ~-~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p 126 (137)
T cd08409 94 V-RKSKLLGRVVLGPFMYARGKELEHWNDMLSKP 126 (137)
T ss_pred C-CCcceEEEEEECCcccCCChHHHHHHHHHhCC
Confidence 2 356789999998753 334456688886533
No 76
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=90.77 E-value=0.74 Score=43.48 Aligned_cols=95 Identities=16% Similarity=0.188 Sum_probs=68.9
Q ss_pred EEEEEEEeeccccccCCC---CeEEEEEEeeC--Ccccccccccc-cCCcccccCccccccc----cceeEEEEeeccCC
Q psy11343 29 QLEVIVMEVKGLKSLAPN---RIVYCTMEVEG--GEKLQTDQAEA-SKPMWDTQADFSTNQP----LPAIKVKLFTENPG 98 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~---~~vyctme~eg--~~kl~td~~ea-~~p~w~tq~df~t~~p----lp~~kvkl~~e~~g 98 (1150)
.|.|.|++.+||.....+ ---||.+.+.+ ..+.+|....- .-|.|+..-.|.-..+ --.+++.++.....
T Consensus 2 ~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~ 81 (111)
T cd04041 2 VLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRF 81 (111)
T ss_pred EEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCC
Confidence 488999999999876543 23699998854 34567776554 5799999888854432 34789999987653
Q ss_pred cccccccccceEEeecCCCCCCCcccccc
Q psy11343 99 MLALEDKELGKVILRPTPLSSKAPEWHKM 127 (1150)
Q Consensus 99 ~l~~edkelg~v~~~p~~~~~~~~~~~~m 127 (1150)
-.|..||++.+...... ..+.|+..
T Consensus 82 ---~~dd~lG~~~i~l~~l~-~~~~~~~~ 106 (111)
T cd04041 82 ---TADDRLGRVEIDLKELI-EDRNWMGR 106 (111)
T ss_pred ---CCCCcceEEEEEHHHHh-cCCCCCcc
Confidence 25789999999776654 77888754
No 77
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=90.66 E-value=0.86 Score=44.08 Aligned_cols=97 Identities=19% Similarity=0.200 Sum_probs=68.4
Q ss_pred EEEEEEeeccccccCCCC--eEEEEEEeeCCccccccccc-ccCCcccccCccccccccceeEEEEeeccCCcccccccc
Q psy11343 30 LEVIVMEVKGLKSLAPNR--IVYCTMEVEGGEKLQTDQAE-ASKPMWDTQADFSTNQPLPAIKVKLFTENPGMLALEDKE 106 (1150)
Q Consensus 30 lev~v~ev~~l~~~~~~~--~vyctme~eg~~kl~td~~e-a~~p~w~tq~df~t~~plp~~kvkl~~e~~g~l~~edke 106 (1150)
|.|.|++.+||+....+. -.||.+.+.|-.+-+|.... ..-|.|++.-.|...++-..++|.+|..... -.|..
T Consensus 3 L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~---~~d~~ 79 (120)
T cd04045 3 LRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKV---GKDRS 79 (120)
T ss_pred EEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCC---CCCCe
Confidence 678999999999876432 25999999654566665433 3579999998887777777888888876542 34678
Q ss_pred cceEEeecC-CCCCCCcccccccc
Q psy11343 107 LGKVILRPT-PLSSKAPEWHKMLV 129 (1150)
Q Consensus 107 lg~v~~~p~-~~~~~~~~~~~m~~ 129 (1150)
+|.+.+... -.....-.||...=
T Consensus 80 IG~~~~~l~~l~~~~~~~~~~~~~ 103 (120)
T cd04045 80 LGSVEINVSDLIKKNEDGKYVEYD 103 (120)
T ss_pred eeEEEEeHHHhhCCCCCceEEecC
Confidence 999988522 11224467887543
No 78
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=90.59 E-value=0.83 Score=46.87 Aligned_cols=94 Identities=24% Similarity=0.429 Sum_probs=66.4
Q ss_pred EEEEEEEEEeeccccccCCCCe--EEEEEEeeCCc----------------------------ccccccccc-cCCcccc
Q psy11343 27 NFQLEVIVMEVKGLKSLAPNRI--VYCTMEVEGGE----------------------------KLQTDQAEA-SKPMWDT 75 (1150)
Q Consensus 27 ~f~lev~v~ev~~l~~~~~~~~--vyctme~eg~~----------------------------kl~td~~ea-~~p~w~t 75 (1150)
.|.|.|.|++.+||.....+.. -||.+-+.++. ..+|..... ..|.|+.
T Consensus 27 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE 106 (153)
T cd08676 27 IFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNE 106 (153)
T ss_pred eEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcccc
Confidence 5899999999999987665432 38888775332 245655543 6899999
Q ss_pred cCccccccc-cceeEEEEeeccCCcccccccccceEEeecCCC-CCCCcccccc
Q psy11343 76 QADFSTNQP-LPAIKVKLFTENPGMLALEDKELGKVILRPTPL-SSKAPEWHKM 127 (1150)
Q Consensus 76 q~df~t~~p-lp~~kvkl~~e~~g~l~~edkelg~v~~~p~~~-~~~~~~~~~m 127 (1150)
.-.|.-..+ --.+.|.+|... |.-||++.+..... +.....||.+
T Consensus 107 ~F~f~v~~~~~~~L~i~V~D~d-------d~~IG~v~i~l~~l~~~~~d~W~~L 153 (153)
T cd08676 107 TFRFEVEDVSNDQLHLDIWDHD-------DDFLGCVNIPLKDLPSCGLDSWFKL 153 (153)
T ss_pred EEEEEeccCCCCEEEEEEEecC-------CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence 999987654 235788888665 78899999853322 3567888863
No 79
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=88.40 E-value=0.31 Score=47.06 Aligned_cols=50 Identities=26% Similarity=0.414 Sum_probs=38.7
Q ss_pred cccceeeeechhHHHhhhceeEEEEEeece-ehhhccccccC------CCCcccccccccee
Q psy11343 153 KHCGYLFAYGKSTWRKWKKRYFVLVQVSQY-TFAMCSFKEKK------SDPSEFMQLDGYTV 207 (1150)
Q Consensus 153 k~~gy~~~~g~~~~kkwk~r~~~lvqvsqy-tfa~cs~~e~k------s~p~e~~ql~g~tv 207 (1150)
.+||||.-+ |.||||||||=+-|-= --.++.|+..| +.|...+-|++-+.
T Consensus 3 ~k~GyL~K~-----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~ 59 (101)
T cd01257 3 RKSGYLRKQ-----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFN 59 (101)
T ss_pred cEEEEEeEe-----cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEE
Confidence 479999987 8999999999876421 12578888776 67888888888764
No 80
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=88.35 E-value=0.39 Score=44.11 Aligned_cols=50 Identities=22% Similarity=0.416 Sum_probs=33.9
Q ss_pred ccceeeeechhHHHhhhceeEEEEEeeceehhhcccc-ccCCCCcccccccccee
Q psy11343 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFK-EKKSDPSEFMQLDGYTV 207 (1150)
Q Consensus 154 ~~gy~~~~g~~~~kkwk~r~~~lvqvsqytfa~cs~~-e~ks~p~e~~ql~g~tv 207 (1150)
|-|||+=.|. ..|.||+|||||-.= ..-+.-|+ +..+.|.-.+.|++.+.
T Consensus 1 ~~G~L~K~g~-~~k~WkkRwFvL~~~---~~~L~Yy~~~~~~~~~g~I~L~~~~~ 51 (101)
T cd01235 1 CEGYLYKRGA-LLKGWKPRWFVLDPD---KHQLRYYDDFEDTAEKGCIDLAEVKS 51 (101)
T ss_pred CeEEEEEcCC-CCCCccceEEEEECC---CCEEEEecCCCCCccceEEEcceeEE
Confidence 4599999997 579999999999621 11122233 34577877788877653
No 81
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=87.87 E-value=0.11 Score=51.50 Aligned_cols=50 Identities=6% Similarity=0.068 Sum_probs=45.8
Q ss_pred HhHHhhccCchhHHHHHhhhcccccccccccccccccCccEEEeccCccc
Q psy11343 451 LLFNALQLDSADEQTAAIRRELDNLEGGRYFFNAFKESESILYACDDENE 500 (1150)
Q Consensus 451 ~~~~~~~~~~~~~~~~~i~~el~~l~ggk~FF~~vkegD~i~fa~dDE~e 500 (1150)
--|+.+.+++-+.||++++..+||.|++.|.|.+....+.|.|.++|++.
T Consensus 25 DPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~ 74 (126)
T cd08379 25 DAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQ 74 (126)
T ss_pred CeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCC
Confidence 35899999999999999999999999999999998877899999999876
No 82
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=86.75 E-value=2.8 Score=39.89 Aligned_cols=96 Identities=15% Similarity=0.278 Sum_probs=65.8
Q ss_pred EEEEEEEeeccccccCCCCe--EEEEEEe--eCCcccccccccc-cCCcccccCccccc--ccc--ceeEEEEeeccCCc
Q psy11343 29 QLEVIVMEVKGLKSLAPNRI--VYCTMEV--EGGEKLQTDQAEA-SKPMWDTQADFSTN--QPL--PAIKVKLFTENPGM 99 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~~--vyctme~--eg~~kl~td~~ea-~~p~w~tq~df~t~--~pl--p~~kvkl~~e~~g~ 99 (1150)
+|.|.|++.+||+....+.. -||.+.+ +++.+.+|.-... .-|.|+..-.|... .-+ -.+++.++.....
T Consensus 17 ~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~- 95 (125)
T cd08386 17 TLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRF- 95 (125)
T ss_pred EEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCC-
Confidence 68899999999987654433 5899888 5667788877665 47999998877521 112 2477888866532
Q ss_pred ccccccccceEEeecCC--CCCCCcccccc
Q psy11343 100 LALEDKELGKVILRPTP--LSSKAPEWHKM 127 (1150)
Q Consensus 100 l~~edkelg~v~~~p~~--~~~~~~~~~~m 127 (1150)
-.|.-+|++.+.-.. .+....-||.+
T Consensus 96 --~~~~~iG~~~i~l~~l~~~~~~~~W~~l 123 (125)
T cd08386 96 --SRNDPIGEVSLPLNKVDLTEEQTFWKDL 123 (125)
T ss_pred --cCCcEeeEEEEecccccCCCCcceEEec
Confidence 245679999886443 34556678764
No 83
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=86.39 E-value=0.27 Score=47.44 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=21.1
Q ss_pred cceeeeechhHHHhhhceeEEEE
Q psy11343 155 CGYLFAYGKSTWRKWKKRYFVLV 177 (1150)
Q Consensus 155 ~gy~~~~g~~~~kkwk~r~~~lv 177 (1150)
=|||.=.|+++||.||+|+|+|.
T Consensus 2 ~G~l~K~g~~~~K~wK~rwF~l~ 24 (98)
T cd01245 2 KGNLLKRTKSVTKLWKTLYFALI 24 (98)
T ss_pred CCccccCCCCcccccceeEEEEe
Confidence 38999999999999999999994
No 84
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=86.21 E-value=3.5 Score=39.40 Aligned_cols=97 Identities=23% Similarity=0.379 Sum_probs=65.7
Q ss_pred EEEEEEEeeccccccCCCC--eEEEEEEe--eCCccccccccc-ccCCcccccCccccccc-cc--eeEEEEeeccCCcc
Q psy11343 29 QLEVIVMEVKGLKSLAPNR--IVYCTMEV--EGGEKLQTDQAE-ASKPMWDTQADFSTNQP-LP--AIKVKLFTENPGML 100 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~--~vyctme~--eg~~kl~td~~e-a~~p~w~tq~df~t~~p-lp--~~kvkl~~e~~g~l 100 (1150)
.|.|.|++.+||.....+. -.||.+.+ +++.+.+|.-.. ..-|.|+..-.|.-... |+ .+.|.++.... +
T Consensus 17 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~--~ 94 (124)
T cd08387 17 ILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ--F 94 (124)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC--C
Confidence 4789999999998654332 36999998 445566776553 37799999887753322 33 58888887643 2
Q ss_pred cccccccceEEeecCC--CCCCCccccccc
Q psy11343 101 ALEDKELGKVILRPTP--LSSKAPEWHKML 128 (1150)
Q Consensus 101 ~~edkelg~v~~~p~~--~~~~~~~~~~m~ 128 (1150)
..|.-+|++.+.-.- .+...-.||.+.
T Consensus 95 -~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 95 -SRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred -CCCceeEEEEEecccccCCCCcceEEECc
Confidence 256789999985322 234667788763
No 85
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=86.07 E-value=0.68 Score=45.06 Aligned_cols=50 Identities=24% Similarity=0.633 Sum_probs=37.9
Q ss_pred ceeeeechhHHHhhhceeEEEEEeeceehhhccccc-cCCCCccccccccceeeecc
Q psy11343 156 GYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKE-KKSDPSEFMQLDGYTVDYIE 211 (1150)
Q Consensus 156 gy~~~~g~~~~kkwk~r~~~lvqvsqytfa~cs~~e-~ks~p~e~~ql~g~tvdy~~ 211 (1150)
|||+-.|.. .+.||+|||||-. ..++=|+. +..+|.-.+.|++.+|.-.+
T Consensus 4 G~L~K~~~~-~~~WkkRwfvL~~-----~~L~yyk~~~~~~~~g~I~L~~~~v~~~~ 54 (125)
T cd01252 4 GWLLKQGGR-VKTWKRRWFILTD-----NCLYYFEYTTDKEPRGIIPLENVSIREVE 54 (125)
T ss_pred EEEEEeCCC-CCCeEeEEEEEEC-----CEEEEEcCCCCCCceEEEECCCcEEEEcc
Confidence 999988865 5999999999942 23555664 34778899999988876653
No 86
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=85.84 E-value=3.5 Score=41.07 Aligned_cols=91 Identities=20% Similarity=0.359 Sum_probs=64.3
Q ss_pred ccccccceEEEEEEEEEEEeeccccccCCC-CeEEEEEEeeCCcccccccccc-cCCcccccCcccccc--ccceeEEEE
Q psy11343 17 VSLSKVDITLNFQLEVIVMEVKGLKSLAPN-RIVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQ--PLPAIKVKL 92 (1150)
Q Consensus 17 ~~~~k~d~~l~f~lev~v~ev~~l~~~~~~-~~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~--plp~~kvkl 92 (1150)
...++.++- +|.|.|++.+||+.-... ---||.+.+. |.+.+|.-..- ..|.|+..=.|.... +.-.++|.+
T Consensus 20 ~~~~~~~~~---~L~V~V~~A~~L~~d~~g~~DPYVkV~~~-~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V 95 (127)
T cd04032 20 CCPTRRGLA---TLTVTVLRATGLWGDYFTSTDGYVKVFFG-GQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEV 95 (127)
T ss_pred cCcCcCCcE---EEEEEEEECCCCCcCcCCCCCeEEEEEEC-CccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEE
Confidence 344555554 799999999999731111 1269999884 66889988766 479999988886322 244678888
Q ss_pred eeccCCcccccccccceEEeec
Q psy11343 93 FTENPGMLALEDKELGKVILRP 114 (1150)
Q Consensus 93 ~~e~~g~l~~edkelg~v~~~p 114 (1150)
+....- ..|..||++.+..
T Consensus 96 ~D~d~~---s~dd~IG~~~i~l 114 (127)
T cd04032 96 WDRDNG---WDDDLLGTCSVVP 114 (127)
T ss_pred EeCCCC---CCCCeeEEEEEEe
Confidence 887652 3678999998854
No 87
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=85.27 E-value=0.71 Score=39.36 Aligned_cols=55 Identities=31% Similarity=0.498 Sum_probs=39.8
Q ss_pred cccceeeeechhHHHhhhceeEEEEEeeceehhhccccccC--CCCccccccccceeeec
Q psy11343 153 KHCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKK--SDPSEFMQLDGYTVDYI 210 (1150)
Q Consensus 153 k~~gy~~~~g~~~~kkwk~r~~~lvqvsqytfa~cs~~e~k--s~p~e~~ql~g~tvdy~ 210 (1150)
.++|||+-.++..+.+|++||++|-- -.+.+|.-.+.. ..|...+-|++..|.-.
T Consensus 2 ~~~G~l~~~~~~~~~~~~~~~~~L~~---~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~ 58 (102)
T smart00233 2 IKEGWLYKKSGGKKKSWKKRYFVLFN---STLLYYKSEKAKKDYKPKGSIDLSGITVREA 58 (102)
T ss_pred ceeEEEEEeCCCccCCceEEEEEEEC---CEEEEEeCCCccccCCCceEEECCcCEEEeC
Confidence 47899999888788999999999864 334444333332 57788888888876644
No 88
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=85.22 E-value=4.9 Score=39.28 Aligned_cols=97 Identities=16% Similarity=0.365 Sum_probs=66.5
Q ss_pred EEEEEEEeeccccccCCCC--eEEEEEEeeCCc----cccccccc-ccCCcccccCcccccc-ccc--eeEEEEeeccCC
Q psy11343 29 QLEVIVMEVKGLKSLAPNR--IVYCTMEVEGGE----KLQTDQAE-ASKPMWDTQADFSTNQ-PLP--AIKVKLFTENPG 98 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~--~vyctme~eg~~----kl~td~~e-a~~p~w~tq~df~t~~-plp--~~kvkl~~e~~g 98 (1150)
+|.|.|++.+||.....+. --||.+.+.++. +.+|.-.. ..-|.|+..-.|.-.. .++ .+.|.++.....
T Consensus 16 ~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~ 95 (136)
T cd08404 16 RLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRV 95 (136)
T ss_pred eEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCC
Confidence 6889999999998764332 369999997652 33555442 2569999987775321 123 467788886642
Q ss_pred cccccccccceEEeecCCCCCCCccccccc
Q psy11343 99 MLALEDKELGKVILRPTPLSSKAPEWHKML 128 (1150)
Q Consensus 99 ~l~~edkelg~v~~~p~~~~~~~~~~~~m~ 128 (1150)
-.|.-+|++.+.+.......+.|+.|.
T Consensus 96 ---~~~~~iG~~~~~~~~~~~~~~~w~~l~ 122 (136)
T cd08404 96 ---TKNEVIGRLVLGPKASGSGGHHWKEVC 122 (136)
T ss_pred ---CCCccEEEEEECCcCCCchHHHHHHHH
Confidence 257789999997766555667788764
No 89
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=84.91 E-value=0.76 Score=41.03 Aligned_cols=52 Identities=29% Similarity=0.445 Sum_probs=35.4
Q ss_pred ccceeeeechhHHHhhhceeEEEEEeeceehhhccccccC---CCCccccccccceeeec
Q psy11343 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKK---SDPSEFMQLDGYTVDYI 210 (1150)
Q Consensus 154 ~~gy~~~~g~~~~kkwk~r~~~lvqvsqytfa~cs~~e~k---s~p~e~~ql~g~tvdy~ 210 (1150)
..|||+--|....+.|++|||+|- -.. ++-|+... ..|...+.|++.+|...
T Consensus 1 k~G~L~kk~~~~~~~W~kr~~~L~-~~~----l~~y~~~~~~~~~~~~~i~l~~~~v~~~ 55 (94)
T cd01250 1 KQGYLYKRSSKSNKEWKKRWFVLK-NGQ----LTYHHRLKDYDNAHVKEIDLRRCTVRHN 55 (94)
T ss_pred CcceEEEECCCcCCCceEEEEEEe-CCe----EEEEcCCcccccccceEEeccceEEecC
Confidence 369999887666789999999995 222 22344332 56777788877776543
No 90
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=84.68 E-value=2.3 Score=43.53 Aligned_cols=98 Identities=15% Similarity=0.283 Sum_probs=69.0
Q ss_pred EEEEEEEeeccccccCCCC----------------eEEEEEEeeCCcccccccccc-cCCcccccCccccccc--cceeE
Q psy11343 29 QLEVIVMEVKGLKSLAPNR----------------IVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQP--LPAIK 89 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~----------------~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~p--lp~~k 89 (1150)
+|.|.|+++++|.....+- =-||.+.+. |.+.+|..... .-|.|+..=.|.-..| --.+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~-g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~ 79 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA-GQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK 79 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC-CEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence 3678999999988765332 359999985 67889987765 4899999988874433 23678
Q ss_pred EEEeeccCCcccccccccceEEeecCCC---C------CCCccccccccC
Q psy11343 90 VKLFTENPGMLALEDKELGKVILRPTPL---S------SKAPEWHKMLVP 130 (1150)
Q Consensus 90 vkl~~e~~g~l~~edkelg~v~~~p~~~---~------~~~~~~~~m~~~ 130 (1150)
+.++..... ..|.-+|++.+..... . ...|-|+.|.-+
T Consensus 80 ~~v~D~d~~---~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 80 IQIRDWDRV---GNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EEEEECCCC---CCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 888887653 2567799998853321 1 235899998433
No 91
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=84.49 E-value=0.62 Score=44.25 Aligned_cols=54 Identities=26% Similarity=0.508 Sum_probs=36.6
Q ss_pred ccceeeeechhHHHhhhceeEEEEEeeceehhhccccccCCCC-ccccccccceeeeccC
Q psy11343 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDP-SEFMQLDGYTVDYIEP 212 (1150)
Q Consensus 154 ~~gy~~~~g~~~~kkwk~r~~~lvqvsqytfa~cs~~e~ks~p-~e~~ql~g~tvdy~~~ 212 (1150)
++|||.=.|. .++.||+|||+|=.=. -+.-|+.+..+. .....|++++|.=|.+
T Consensus 3 k~G~L~K~g~-~~~~Wk~R~f~L~~~~----~l~~yk~~~~~~~~~~i~l~~~~v~~~~~ 57 (102)
T cd01241 3 KEGWLHKRGE-YIKTWRPRYFLLKSDG----SFIGYKEKPEDGDPFLPPLNNFSVAECQL 57 (102)
T ss_pred EEEEEEeecC-CCCCCeeEEEEEeCCC----eEEEEecCCCccCccccccCCeEEeeeee
Confidence 6899999986 7999999999994111 123355544333 2467799999866644
No 92
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=84.40 E-value=0.73 Score=40.92 Aligned_cols=50 Identities=26% Similarity=0.528 Sum_probs=35.4
Q ss_pred ccceeeeechhHHHhhhceeEEEEEeeceehhhccccccC-C--CCccccccccceeee
Q psy11343 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKK-S--DPSEFMQLDGYTVDY 209 (1150)
Q Consensus 154 ~~gy~~~~g~~~~kkwk~r~~~lvqvsqytfa~cs~~e~k-s--~p~e~~ql~g~tvdy 209 (1150)
++|||+-.|... +.|++|||+|- .. .+.-|+.++ + .|...+.|++-++..
T Consensus 1 ~~G~L~k~~~~~-~~W~~r~~vl~--~~---~L~~~~~~~~~~~~~~~~i~l~~~~~~~ 53 (91)
T cd01246 1 VEGWLLKWTNYL-KGWQKRWFVLD--NG---LLSYYKNKSSMRGKPRGTILLSGAVISE 53 (91)
T ss_pred CeEEEEEecccC-CCceeeEEEEE--CC---EEEEEecCccCCCCceEEEEeceEEEEE
Confidence 479999887655 89999999984 22 233344443 3 788889999877643
No 93
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=84.10 E-value=3.6 Score=38.98 Aligned_cols=96 Identities=15% Similarity=0.249 Sum_probs=63.2
Q ss_pred EEEEEEEeeccccccC-CCC--eEEEEEEee--CCccccccccc-ccCCcccccCcccccc-ccc--eeEEEEeeccCCc
Q psy11343 29 QLEVIVMEVKGLKSLA-PNR--IVYCTMEVE--GGEKLQTDQAE-ASKPMWDTQADFSTNQ-PLP--AIKVKLFTENPGM 99 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~-~~~--~vyctme~e--g~~kl~td~~e-a~~p~w~tq~df~t~~-plp--~~kvkl~~e~~g~ 99 (1150)
.|.|.|.+.+||+... .+. -.||++.+- +..+-+|.-.. ...|.|+..-.|.-+. .+. .++|.++.....
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~- 93 (123)
T cd08390 15 QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRF- 93 (123)
T ss_pred EEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcC-
Confidence 4789999999998764 222 469999883 44555665443 3689999988776332 222 588888875542
Q ss_pred ccccccccceEEeecCC--CCCCCcccccc
Q psy11343 100 LALEDKELGKVILRPTP--LSSKAPEWHKM 127 (1150)
Q Consensus 100 l~~edkelg~v~~~p~~--~~~~~~~~~~m 127 (1150)
..|.-+|.+.+.-.. ......-|+.|
T Consensus 94 --~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 94 --SRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred --CCCcEEEEEEEeccceecCCCceEEEeC
Confidence 267889999886443 22333456654
No 94
>PF10540 Membr_traf_MHD: Munc13 (mammalian uncoordinated) homology domain; InterPro: IPR019558 Mammalian uncoordinated homology 13 (Munc13) proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p. Munc13 proteins contain a phorbol ester-binding C1 domain and two C2 domains, which are Ca2+/phospholipid binding domains. Sequence analyses have uncovered two regions called Munc13 homology domains 1 (MHD1) and 2 (MHD2) that are arranged between two flanking C2 domains. MHD1 and MHD2 domains are present in a wide variety of proteins from Arabidopsis thaliana (Mouse-ear cress), C. elegans, Drosophila melanogaster (Fruit fly), Mus musculus (Mouse), Rattus norvegicus (Rat) and Homo sapiens (Human), some of which may function in a Munc13-like manner to regulate membrane trafficking. The MHD1 and MHD2 domains are predicted to be alpha-helical. ; PDB: 3SWH_A.
Probab=84.02 E-value=1.2 Score=44.99 Aligned_cols=97 Identities=19% Similarity=0.178 Sum_probs=62.3
Q ss_pred ccCCcchhhhhhH-HHHHhhHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHhhh--------------------hhc
Q psy11343 1038 VSGNGKELGQAYV-NFSRNNMDQIRSKINDELWILNFF--ELWYTAQMKVLCNWLSE--------------------RVD 1094 (1150)
Q Consensus 1038 v~kPg~dl~~~Yv-~FvR~n~d~Lr~kV~dELw~l~~f--e~wy~~~~~~i~~WLte--------------------R~d 1094 (1150)
+..|.||-.|+.. .+..+|.+.+..+|..++|...+- +.=. +--.|++ --.
T Consensus 3 ai~PL~dyLd~nL~~L~~~L~~~~f~~vl~~lW~~vl~~l~~ll------vlP~ls~~~~~~~~~~~~~~~~~~~~~~~~ 76 (137)
T PF10540_consen 3 AIEPLMDYLDSNLSILASNLEKENFKRVLKELWKVVLETLEELL------VLPPLSDKPMLGLLQSAVSSLSSHGIGGSQ 76 (137)
T ss_dssp HHHHHHHHHCHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHT------TS-G------------GG-TTS--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCcchhHHHHHHHHHHHHHHhhcccccC
Confidence 4579999999996 599999999999999999987652 3222 0222233 235
Q ss_pred ccchhhhhhhHHHHHHhhcccc--cccccccccc-ccccHHHHHHhhhh
Q psy11343 1095 NSLHVYQCNCLSHCVKKMYSDF--ELQGVMEDKL-NSKTYQTVSQRMQT 1140 (1150)
Q Consensus 1095 ~~Lh~yQl~~L~~ivKk~y~df--~lqgv~~~~l-~~~~y~tv~~r~~~ 1140 (1150)
..|++.|+..|...+.-+-.-| +=.|+..+.| .|..||.+...+..
T Consensus 77 ~~Lt~~q~~~l~~~L~~L~~FFhA~G~Gl~~~~L~ks~~yq~L~~~l~l 125 (137)
T PF10540_consen 77 RPLTPKQCDRLFKWLDTLKDFFHAEGNGLPLEFLEKSPEYQSLRYILSL 125 (137)
T ss_dssp -----TCHHHHHHHHHHHHHHHHCCCTS--HHHHHC-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHccCHHHHHHHHHHHH
Confidence 6888999988877666663323 4569999999 99999999998876
No 95
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=83.86 E-value=2.3 Score=43.57 Aligned_cols=87 Identities=20% Similarity=0.278 Sum_probs=59.9
Q ss_pred EEEEEEEEEeeccccccCCCC--eEEEEEEee----CCcccccccccc-cCCcccccCcccc--ccccc--eeEEEEeec
Q psy11343 27 NFQLEVIVMEVKGLKSLAPNR--IVYCTMEVE----GGEKLQTDQAEA-SKPMWDTQADFST--NQPLP--AIKVKLFTE 95 (1150)
Q Consensus 27 ~f~lev~v~ev~~l~~~~~~~--~vyctme~e----g~~kl~td~~ea-~~p~w~tq~df~t--~~plp--~~kvkl~~e 95 (1150)
.-+|.|.|++.+||.....+. --||.+.+. +..+.+|..... .-|.|+..=.|.. ..-++ .++|.++..
T Consensus 26 ~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~ 105 (162)
T cd04020 26 TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDH 105 (162)
T ss_pred CceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeC
Confidence 345899999999997554221 258888774 346778887655 4699999877752 22233 478888876
Q ss_pred cCCcccccccccceEEeecCC
Q psy11343 96 NPGMLALEDKELGKVILRPTP 116 (1150)
Q Consensus 96 ~~g~l~~edkelg~v~~~p~~ 116 (1150)
.. + -.|.-||.|.+....
T Consensus 106 d~--~-~~d~~lG~v~i~l~~ 123 (162)
T cd04020 106 DK--L-SSNDFLGGVRLGLGT 123 (162)
T ss_pred CC--C-CCCceEEEEEEeCCc
Confidence 54 2 247789999997654
No 96
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=83.85 E-value=2.6 Score=42.13 Aligned_cols=102 Identities=19% Similarity=0.295 Sum_probs=72.8
Q ss_pred EEEEEEEeeccccccCCCC--eEEEEEEeeC--C---cccccccccc-cCCcccccCcccccc-ccc--eeEEEEeeccC
Q psy11343 29 QLEVIVMEVKGLKSLAPNR--IVYCTMEVEG--G---EKLQTDQAEA-SKPMWDTQADFSTNQ-PLP--AIKVKLFTENP 97 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~--~vyctme~eg--~---~kl~td~~ea-~~p~w~tq~df~t~~-plp--~~kvkl~~e~~ 97 (1150)
+|.|.|++++||.....+. -.|+.+.+-. | .|.+|.-... ..|.|+..=-|.-+. -|+ .+.|.++.-..
T Consensus 16 ~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~ 95 (138)
T cd08408 16 RLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK 95 (138)
T ss_pred eEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC
Confidence 5899999999999876543 4688888843 2 2458887766 689999987775332 255 67778887665
Q ss_pred CcccccccccceEEeecCCCCCC-CccccccccCCCC
Q psy11343 98 GMLALEDKELGKVILRPTPLSSK-APEWHKMLVPKNC 133 (1150)
Q Consensus 98 g~l~~edkelg~v~~~p~~~~~~-~~~~~~m~~~k~~ 133 (1150)
+ . .|+-||.|.|-+...++. .--|+.|.-+++.
T Consensus 96 ~--~-~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~ 129 (138)
T cd08408 96 M--K-RKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQ 129 (138)
T ss_pred C--C-CCcEEEEEEECCcCCCchHHHHHHHHHhCCCC
Confidence 2 2 578999999987766653 3449999765543
No 97
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=83.62 E-value=11 Score=38.02 Aligned_cols=104 Identities=16% Similarity=0.240 Sum_probs=64.9
Q ss_pred EEEEEEEEEEeeccccc-cCCCCeEEEEEEeeCC------------ccccccccccc-CCcc-cccCccccccccceeEE
Q psy11343 26 LNFQLEVIVMEVKGLKS-LAPNRIVYCTMEVEGG------------EKLQTDQAEAS-KPMW-DTQADFSTNQPLPAIKV 90 (1150)
Q Consensus 26 l~f~lev~v~ev~~l~~-~~~~~~vyctme~eg~------------~kl~td~~ea~-~p~w-~tq~df~t~~plp~~kv 90 (1150)
|.|++ ++++++||+. .--+--=||.+.+.+| ++.+|.....+ -|.| +.+-.|.-... =.+.|
T Consensus 1 ~~~~~--~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~-~~L~v 77 (137)
T cd08691 1 LSFSL--SGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPT-DVLEI 77 (137)
T ss_pred CEEEE--EEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCC-CEEEE
Confidence 34554 8999999962 1112235888888764 36788888885 8999 88888865322 25788
Q ss_pred EEeeccCCcccccccccceEEeecCC-----CCCCCccccccccCCCCC
Q psy11343 91 KLFTENPGMLALEDKELGKVILRPTP-----LSSKAPEWHKMLVPKNCA 134 (1150)
Q Consensus 91 kl~~e~~g~l~~edkelg~v~~~p~~-----~~~~~~~~~~m~~~k~~~ 134 (1150)
.++....+=-..-|.-||++.+.-.. +.....-||.+. |.+.
T Consensus 78 ~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~--k~~~ 124 (137)
T cd08691 78 EVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLG--RRTP 124 (137)
T ss_pred EEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECC--cCCC
Confidence 88875432111126789999885322 223345566543 5554
No 98
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=83.31 E-value=4.8 Score=40.35 Aligned_cols=101 Identities=19% Similarity=0.310 Sum_probs=69.7
Q ss_pred EEEEEEEeeccccccCCC--CeEEEEEEeeC-Cc---ccccccccc-cCCcccccCccccccc-cc--eeEEEEeeccCC
Q psy11343 29 QLEVIVMEVKGLKSLAPN--RIVYCTMEVEG-GE---KLQTDQAEA-SKPMWDTQADFSTNQP-LP--AIKVKLFTENPG 98 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~--~~vyctme~eg-~~---kl~td~~ea-~~p~w~tq~df~t~~p-lp--~~kvkl~~e~~g 98 (1150)
+|.|.|++++||.....+ ---|+.+.+-+ |. |.+|.-... .-|.|+..=-|.-... |+ .+.|.++....
T Consensus 16 ~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~- 94 (136)
T cd08406 16 RLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE- 94 (136)
T ss_pred EEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC-
Confidence 689999999999876543 24688888744 33 446665533 5899998866642211 22 36777777543
Q ss_pred cccccccccceEEeecCCCCCCCccccccccCCC
Q psy11343 99 MLALEDKELGKVILRPTPLSSKAPEWHKMLVPKN 132 (1150)
Q Consensus 99 ~l~~edkelg~v~~~p~~~~~~~~~~~~m~~~k~ 132 (1150)
. ..|.-+|+|+|-|...+...-.|+.|.-.++
T Consensus 95 -~-~~~~~iG~v~lg~~~~g~~~~hW~~ml~~~~ 126 (136)
T cd08406 95 -D-GKTPNVGHVIIGPAASGMGLSHWNQMLASLR 126 (136)
T ss_pred -C-CCCCeeEEEEECCCCCChhHHHHHHHHHCCC
Confidence 2 2567899999988888888888999876543
No 99
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=83.16 E-value=4.8 Score=39.17 Aligned_cols=97 Identities=13% Similarity=0.318 Sum_probs=66.2
Q ss_pred EEEEEEEeeccccccCCCC--eEEEEEEe--eCCcccccccccccCCcccccCccc-ccc-ccc--eeEEEEeeccCCcc
Q psy11343 29 QLEVIVMEVKGLKSLAPNR--IVYCTMEV--EGGEKLQTDQAEASKPMWDTQADFS-TNQ-PLP--AIKVKLFTENPGML 100 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~--~vyctme~--eg~~kl~td~~ea~~p~w~tq~df~-t~~-plp--~~kvkl~~e~~g~l 100 (1150)
+|.|.|++.+||.....+. ..|+.+=+ +++.+.+|.-.....|.|+..-.|. -+. -|+ .+.+.++.-.. +
T Consensus 17 ~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~--~ 94 (124)
T cd08389 17 KLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRGPNPVFNETFTFSRVEPEELNNMALRFRLYGVER--M 94 (124)
T ss_pred EEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccCCCCcccCEEEECCCCHHHhccCEEEEEEEECCC--c
Confidence 6899999999998765332 24655433 3347888988888999999998886 332 223 36677776643 2
Q ss_pred cccccccceEEee--cCCCCCCCccccccc
Q psy11343 101 ALEDKELGKVILR--PTPLSSKAPEWHKML 128 (1150)
Q Consensus 101 ~~edkelg~v~~~--p~~~~~~~~~~~~m~ 128 (1150)
-.|.-||.+.+. .-......+.|+.+.
T Consensus 95 -~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 95 -RKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred -ccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 246789999884 334455788898754
No 100
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=83.02 E-value=4.5 Score=41.06 Aligned_cols=81 Identities=20% Similarity=0.401 Sum_probs=63.0
Q ss_pred EEEEEEEeeccccccCCCC-eEEEEEEeeCCcccccccccc-cCCcccccCccccccccceeEEEEeeccCCcccccccc
Q psy11343 29 QLEVIVMEVKGLKSLAPNR-IVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQPLPAIKVKLFTENPGMLALEDKE 106 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~-~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~plp~~kvkl~~e~~g~l~~edke 106 (1150)
.|.|.|++.+||....... --||.+.+ |+.+.+|..... .-|.|+..-.|.-..|...+++.+|..... -.|.-
T Consensus 3 ~L~V~Vi~a~nL~~~d~~~sDPYV~v~~-g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~---~~dd~ 78 (145)
T cd04038 3 LLKVRVVRGTNLAVRDFTSSDPYVVLTL-GNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTF---SKDDS 78 (145)
T ss_pred EEEEEEEeeECCCCCCCCCcCcEEEEEE-CCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCC---CCCCE
Confidence 3789999999996543322 25999988 678899987655 579999999999999988899999988752 23567
Q ss_pred cceEEee
Q psy11343 107 LGKVILR 113 (1150)
Q Consensus 107 lg~v~~~ 113 (1150)
+|.+.+.
T Consensus 79 iG~a~i~ 85 (145)
T cd04038 79 MGEAEID 85 (145)
T ss_pred EEEEEEE
Confidence 9998873
No 101
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=82.20 E-value=6 Score=38.41 Aligned_cols=100 Identities=13% Similarity=0.229 Sum_probs=68.6
Q ss_pred EEEEEEeeccccccCCCC--eEEEEEEeeCCccc--cccccc-ccCCcccccCccccccc-cceeEEEEeeccCCccccc
Q psy11343 30 LEVIVMEVKGLKSLAPNR--IVYCTMEVEGGEKL--QTDQAE-ASKPMWDTQADFSTNQP-LPAIKVKLFTENPGMLALE 103 (1150)
Q Consensus 30 lev~v~ev~~l~~~~~~~--~vyctme~eg~~kl--~td~~e-a~~p~w~tq~df~t~~p-lp~~kvkl~~e~~g~l~~e 103 (1150)
|-|.|++.+||.....+. --||.+.+. |.+. +|.... ...|.|+..-+|....| -..++|.++..... -.
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~-~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~---~~ 77 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLG-KKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLL---GS 77 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEEC-CeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCC---CC
Confidence 568899999998655433 259999984 4443 444332 36899999888865444 34688999877542 25
Q ss_pred ccccceEEeecCCCCCCCccccccccCCCCC
Q psy11343 104 DKELGKVILRPTPLSSKAPEWHKMLVPKNCA 134 (1150)
Q Consensus 104 dkelg~v~~~p~~~~~~~~~~~~m~~~k~~~ 134 (1150)
|.-+|++.+.-..--- .+-|+.|..|.+.+
T Consensus 78 dd~iG~~~i~l~~~~~-~~~~~~~~~~~~~~ 107 (124)
T cd04037 78 DDLIGETVIDLEDRFF-SKHRATCGLPPTYE 107 (124)
T ss_pred CceeEEEEEeeccccc-chHHHhccCCCccc
Confidence 6789999986543322 57788888887665
No 102
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=81.67 E-value=9.2 Score=37.35 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=64.6
Q ss_pred EEEEEEEeeccccccCC---CCeEEEEEEeeC----Ccccccccccc-cCCcccccCcccccc-ccc--eeEEEEeeccC
Q psy11343 29 QLEVIVMEVKGLKSLAP---NRIVYCTMEVEG----GEKLQTDQAEA-SKPMWDTQADFSTNQ-PLP--AIKVKLFTENP 97 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~---~~~vyctme~eg----~~kl~td~~ea-~~p~w~tq~df~t~~-plp--~~kvkl~~e~~ 97 (1150)
+|.|.|++.+||..... .---|+.+.+-. ..+.+|..... ..|.|+..=.|.-.. .|+ .+.|.++....
T Consensus 16 ~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd04029 16 SLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR 95 (125)
T ss_pred eEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 58999999999975432 233688887743 23567887766 689999987775432 234 47888886543
Q ss_pred CcccccccccceEEeecCCCCCC--Ccccccc
Q psy11343 98 GMLALEDKELGKVILRPTPLSSK--APEWHKM 127 (1150)
Q Consensus 98 g~l~~edkelg~v~~~p~~~~~~--~~~~~~m 127 (1150)
+ -.|.-||.+.+.-...-++ ...|+.+
T Consensus 96 --~-~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 96 --F-GRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred --C-CCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 2 2567899999965444333 4778764
No 103
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=81.63 E-value=0.98 Score=43.10 Aligned_cols=52 Identities=27% Similarity=0.356 Sum_probs=36.4
Q ss_pred cceeeeechh---HHHhhhceeEEEEEe---eceehhhcccccc-CCCCcccccccccee
Q psy11343 155 CGYLFAYGKS---TWRKWKKRYFVLVQV---SQYTFAMCSFKEK-KSDPSEFMQLDGYTV 207 (1150)
Q Consensus 155 ~gy~~~~g~~---~~kkwk~r~~~lvqv---sqytfa~cs~~e~-ks~p~e~~ql~g~tv 207 (1150)
.|||.-.|.. .-+.||||||||-.= ++ .|.++-|+.. ++.|...+.|+..++
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~-~~~L~Yyk~~~~~k~~g~I~L~~~~~ 60 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERN-LFALEYYKTSRKFKLEFVIDLESCSQ 60 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCC-cceEEEECCCCCCccceEEECCccEE
Confidence 3777766652 247999999999642 22 5667777765 478888888888544
No 104
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=81.35 E-value=6.1 Score=39.04 Aligned_cols=96 Identities=16% Similarity=0.245 Sum_probs=66.5
Q ss_pred EEEEEEEeeccccccCCC---CeEEEEEEeeCC----cccccccccc-cCCcccccCcccccc-ccc--eeEEEEeeccC
Q psy11343 29 QLEVIVMEVKGLKSLAPN---RIVYCTMEVEGG----EKLQTDQAEA-SKPMWDTQADFSTNQ-PLP--AIKVKLFTENP 97 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~---~~vyctme~eg~----~kl~td~~ea-~~p~w~tq~df~t~~-plp--~~kvkl~~e~~ 97 (1150)
+|.|.|++.+||.....+ .--|+.+.+-.+ .|.+|..... ..|.|+..--|.-.. -|+ .+.|.++.-
T Consensus 16 ~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~-- 93 (128)
T cd08392 16 CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS-- 93 (128)
T ss_pred EEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC--
Confidence 489999999999876432 356888887533 3667887766 789999988886322 244 566666653
Q ss_pred CcccccccccceEEeecCC-----CCCCCcccccc
Q psy11343 98 GMLALEDKELGKVILRPTP-----LSSKAPEWHKM 127 (1150)
Q Consensus 98 g~l~~edkelg~v~~~p~~-----~~~~~~~~~~m 127 (1150)
+-+. .|.=||.+.|.-.- .....+.||++
T Consensus 94 ~~~~-~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 94 RTLK-RRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred CCCc-CcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 4343 56789999996422 24578999985
No 105
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=80.85 E-value=5.9 Score=38.49 Aligned_cols=96 Identities=21% Similarity=0.319 Sum_probs=65.2
Q ss_pred EEEEEEEeeccccccC-CCCeEEEEEEeeC----Ccccccccccc-cCCcccccCcccc--ccccc--eeEEEEeeccCC
Q psy11343 29 QLEVIVMEVKGLKSLA-PNRIVYCTMEVEG----GEKLQTDQAEA-SKPMWDTQADFST--NQPLP--AIKVKLFTENPG 98 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~-~~~~vyctme~eg----~~kl~td~~ea-~~p~w~tq~df~t--~~plp--~~kvkl~~e~~g 98 (1150)
+|.|.|++.+||.... ...--||.+-+-+ ..+.+|..... .-|.|+.+=.|.- ..-++ .+.|.++.....
T Consensus 14 ~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~ 93 (122)
T cd08381 14 TLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSL 93 (122)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCC
Confidence 5899999999997664 1123588887753 34678887765 5899999987753 22233 567777765432
Q ss_pred cccccccccceEEeecCC--CCCCCcccccc
Q psy11343 99 MLALEDKELGKVILRPTP--LSSKAPEWHKM 127 (1150)
Q Consensus 99 ~l~~edkelg~v~~~p~~--~~~~~~~~~~m 127 (1150)
..|.-||.+.+.-.. .....+.||.+
T Consensus 94 ---~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 94 ---VENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred ---cCCcEEEEEEEeccccccCCCccceEEC
Confidence 256679999986544 34456889874
No 106
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=80.79 E-value=4.4 Score=38.46 Aligned_cols=88 Identities=16% Similarity=0.311 Sum_probs=59.4
Q ss_pred EEEEEEeeCCccccccccc-ccCCcccccCcccccccc-ceeEEEEeeccCCcccccccccceEEeecC---CCCCCCcc
Q psy11343 49 VYCTMEVEGGEKLQTDQAE-ASKPMWDTQADFSTNQPL-PAIKVKLFTENPGMLALEDKELGKVILRPT---PLSSKAPE 123 (1150)
Q Consensus 49 vyctme~eg~~kl~td~~e-a~~p~w~tq~df~t~~pl-p~~kvkl~~e~~g~l~~edkelg~v~~~p~---~~~~~~~~ 123 (1150)
-||.+-|.|...-+|.... ...|.|+..-+|.-.++. -.+.|.++.+.. + .|..+|++.+.-. ..+....+
T Consensus 15 PYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~--~--~d~~iG~~~v~L~~l~~~~~~~~~ 90 (111)
T cd04052 15 PYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRD--R--HDPVLGSVSISLNDLIDATSVGQQ 90 (111)
T ss_pred ceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCC--C--CCCeEEEEEecHHHHHhhhhccce
Confidence 4999999654444555433 358999999999866552 348888887663 3 7899999998632 22445689
Q ss_pred ccccccCCCCCCcCceEEEE
Q psy11343 124 WHKMLVPKNCADQDLKIKIA 143 (1150)
Q Consensus 124 ~~~m~~~k~~~d~~l~i~~~ 143 (1150)
|+.+.- .+.+.|+|++.
T Consensus 91 w~~L~~---~~~G~i~~~~~ 107 (111)
T cd04052 91 WFPLSG---NGQGRIRISAL 107 (111)
T ss_pred eEECCC---CCCCEEEEEEE
Confidence 999753 34455666553
No 107
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=80.39 E-value=7.1 Score=38.61 Aligned_cols=97 Identities=16% Similarity=0.286 Sum_probs=64.3
Q ss_pred EEEEEEEeeccccccCCCC-eEEEEEEeeC---Cc---cccccccccc-CCcccccCcccc-ccccc---eeEEEEeecc
Q psy11343 29 QLEVIVMEVKGLKSLAPNR-IVYCTMEVEG---GE---KLQTDQAEAS-KPMWDTQADFST-NQPLP---AIKVKLFTEN 96 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~-~vyctme~eg---~~---kl~td~~ea~-~p~w~tq~df~t-~~plp---~~kvkl~~e~ 96 (1150)
+|.|+|++.++|+...... =-||.+++-| +. |.+|.-...+ -|.|+..-.|.- ++..| .+.|.++...
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 4789999999998753221 3699999865 22 4578777765 899999999984 34343 3777787763
Q ss_pred CCcccccccccceEEeecCCC--CCCCccccccc
Q psy11343 97 PGMLALEDKELGKVILRPTPL--SSKAPEWHKML 128 (1150)
Q Consensus 97 ~g~l~~edkelg~v~~~p~~~--~~~~~~~~~m~ 128 (1150)
. .-.|.-+|++++-.... ......|+.+.
T Consensus 81 ~---~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 81 F---ARDDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred c---cCCCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 2 23466799999843322 22345576653
No 108
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=79.55 E-value=0.82 Score=44.37 Aligned_cols=24 Identities=42% Similarity=0.960 Sum_probs=17.1
Q ss_pred ccceeeeechhHHHhhhceeEEEE
Q psy11343 154 HCGYLFAYGKSTWRKWKKRYFVLV 177 (1150)
Q Consensus 154 ~~gy~~~~g~~~~kkwk~r~~~lv 177 (1150)
.+||||..|....+-||+|||+|-
T Consensus 1 k~G~l~K~~~~~~kgWk~RwFiL~ 24 (112)
T PF15413_consen 1 KEGYLYKWGNKFGKGWKKRWFILR 24 (112)
T ss_dssp EEEEEEE--TTS-S--EEEEEEEE
T ss_pred CCceEEEecCCCCcCccccEEEEE
Confidence 389999999998899999999994
No 109
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=79.39 E-value=13 Score=36.12 Aligned_cols=81 Identities=21% Similarity=0.344 Sum_probs=56.2
Q ss_pred EEEEEEEeeccccccCC-CCeEEEEEEeeCCcccccccccc-cCCcccccCccccccccceeEEEEeeccCCcccccccc
Q psy11343 29 QLEVIVMEVKGLKSLAP-NRIVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQPLPAIKVKLFTENPGMLALEDKE 106 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~-~~~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~plp~~kvkl~~e~~g~l~~edke 106 (1150)
+|.|.|.+.+.++.-.- .---||.+.+.|-.+-+|..... ..|.|+..-.|.- ++-..+.|.+|.... .-.|..
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~-~~~~~l~~~V~d~~~---~~~~~~ 78 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLV-TPQSTLEFKVWSHHT---LKADVL 78 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEe-CCCCEEEEEEEeCCC---CCCCcE
Confidence 57788888763332211 11259999986444777776655 5899999888874 355689999998765 235788
Q ss_pred cceEEee
Q psy11343 107 LGKVILR 113 (1150)
Q Consensus 107 lg~v~~~ 113 (1150)
+|++.+.
T Consensus 79 iG~~~i~ 85 (125)
T cd04021 79 LGEASLD 85 (125)
T ss_pred EEEEEEE
Confidence 9999885
No 110
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=79.25 E-value=1.4 Score=37.25 Aligned_cols=54 Identities=28% Similarity=0.440 Sum_probs=38.9
Q ss_pred ccceeeeechhHHHhhhceeEEEEEeeceehhhccccccC--CCCccccccccceeeec
Q psy11343 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKK--SDPSEFMQLDGYTVDYI 210 (1150)
Q Consensus 154 ~~gy~~~~g~~~~kkwk~r~~~lvqvsqytfa~cs~~e~k--s~p~e~~ql~g~tvdy~ 210 (1150)
+.|||+-.+...|..|++||++|- --.+.+|.-.... ..|...+-|++.+|...
T Consensus 1 ~~G~l~~~~~~~~~~w~~~~~~L~---~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~ 56 (96)
T cd00821 1 KEGYLLKKTGKLRKGWKRRWFVLF---NDLLLYYKKKSSKKSYKPKGSIPLSGAEVEES 56 (96)
T ss_pred CcchhhhhhChhhCCccEEEEEEE---CCEEEEEECCCCCcCCCCcceEEcCCCEEEEC
Confidence 468888777666899999999995 3445555444332 78888888888776654
No 111
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=76.49 E-value=0.57 Score=44.98 Aligned_cols=49 Identities=10% Similarity=0.062 Sum_probs=42.7
Q ss_pred hHHhhccCchhHHHHHhhhcccccccccccccccc------cCccEEEeccCccc
Q psy11343 452 LFNALQLDSADEQTAAIRRELDNLEGGRYFFNAFK------ESESILYACDDENE 500 (1150)
Q Consensus 452 ~~~~~~~~~~~~~~~~i~~el~~l~ggk~FF~~vk------egD~i~fa~dDE~e 500 (1150)
-|+.+.+++.+.+|+.++..+||.|++.|.|.... ..+.+.|.++|.+.
T Consensus 22 pYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~ 76 (126)
T cd08682 22 AYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL 76 (126)
T ss_pred ceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc
Confidence 48888899889999999999999999999998876 46688899998863
No 112
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=74.86 E-value=11 Score=36.06 Aligned_cols=80 Identities=11% Similarity=0.158 Sum_probs=58.9
Q ss_pred EEEEEEeeccccccCC------CCeEEEEEEeeCCcccccccccc-cCCcccccCccccccccc--eeEEEEeeccCCcc
Q psy11343 30 LEVIVMEVKGLKSLAP------NRIVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQPLP--AIKVKLFTENPGML 100 (1150)
Q Consensus 30 lev~v~ev~~l~~~~~------~~~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~plp--~~kvkl~~e~~g~l 100 (1150)
|.|.|++.+||+.... +---||.+++ |+.+.+|.-.+. .-|.|+..-.|.-..+-. .+++.+|--...
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~-~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~-- 79 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISF-GRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF-- 79 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEE-CCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCC--
Confidence 7899999999986531 1235999998 678889998776 589999998886433322 578888876542
Q ss_pred cccccccceEEee
Q psy11343 101 ALEDKELGKVILR 113 (1150)
Q Consensus 101 ~~edkelg~v~~~ 113 (1150)
-.|.-+|++.+.
T Consensus 80 -~~dd~IG~~~l~ 91 (108)
T cd04039 80 -SFNDYVATGSLS 91 (108)
T ss_pred -CCCcceEEEEEE
Confidence 247889999985
No 113
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=74.61 E-value=0.67 Score=43.28 Aligned_cols=62 Identities=11% Similarity=0.188 Sum_probs=50.2
Q ss_pred HhHHhhccCchhHHHHHhhhcccccccccccccccc-cCccEEEeccCcccchhhhhHHhhhhcCcccccC
Q psy11343 451 LLFNALQLDSADEQTAAIRRELDNLEGGRYFFNAFK-ESESILYACDDENEYHLWVMAMYRATGQSHKPTP 520 (1150)
Q Consensus 451 ~~~~~~~~~~~~~~~~~i~~el~~l~ggk~FF~~vk-egD~i~fa~dDE~er~lwVqamyRatGQs~Kpv~ 520 (1150)
--|+.+++++...+|+.++..+||.|++.|-|.+.. +.+.+.|.+.|.+. + +-.|+...|+.
T Consensus 22 dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~-~-------~~iG~~~i~l~ 84 (105)
T cd04050 22 SPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT-G-------KSLGSLTLPLS 84 (105)
T ss_pred CcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC-C-------CccEEEEEEHH
Confidence 358889999989999999999999999999999988 47789999998764 1 22566666543
No 114
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=71.42 E-value=2.8 Score=42.08 Aligned_cols=57 Identities=19% Similarity=0.342 Sum_probs=36.4
Q ss_pred cccceeee-echhHHHhhhceeEEEEEeeceehhhcccc--ccCCCCccccccccceeeeccC
Q psy11343 153 KHCGYLFA-YGKSTWRKWKKRYFVLVQVSQYTFAMCSFK--EKKSDPSEFMQLDGYTVDYIEP 212 (1150)
Q Consensus 153 k~~gy~~~-~g~~~~kkwk~r~~~lvqvsqytfa~cs~~--e~ks~p~e~~ql~g~tvdy~~~ 212 (1150)
.|-|||-. .--+-+|-|+||||||-+-.-|-|- |. ++...|.--+.|.+.++-=.++
T Consensus 2 ~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k---~p~d~~~~~Plg~I~L~~c~~~~v~~ 61 (122)
T cd01263 2 EYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWK---YPDDEKRKGPTGLIDLSTCTSSEGAS 61 (122)
T ss_pred ccceeEEEEeccCCCCCceEEEEEEeCCEEEEEc---CCCccccCCceEEEEhhhCccccccc
Confidence 36799986 4335899999999999854443332 11 2234677777777766644443
No 115
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=69.64 E-value=25 Score=34.20 Aligned_cols=96 Identities=19% Similarity=0.381 Sum_probs=64.1
Q ss_pred EEEEEEEeeccccccCCC---CeEEEEEEeeCC----ccccccccccc-CCcccccCcccccc-ccc--eeEEEEeeccC
Q psy11343 29 QLEVIVMEVKGLKSLAPN---RIVYCTMEVEGG----EKLQTDQAEAS-KPMWDTQADFSTNQ-PLP--AIKVKLFTENP 97 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~---~~vyctme~eg~----~kl~td~~ea~-~p~w~tq~df~t~~-plp--~~kvkl~~e~~ 97 (1150)
+|.|.|++.+||.....+ ---|+.+.+-.+ .+.+|.-.+.+ -|.|+..=.|.-+. .|. .+.|.++.-..
T Consensus 16 ~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd08393 16 ELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS 95 (125)
T ss_pred EEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC
Confidence 488999999999876533 346777777422 45788888764 89999876664221 233 57777777533
Q ss_pred CcccccccccceEEeecCC--CCCCCcccccc
Q psy11343 98 GMLALEDKELGKVILRPTP--LSSKAPEWHKM 127 (1150)
Q Consensus 98 g~l~~edkelg~v~~~p~~--~~~~~~~~~~m 127 (1150)
+ ..|.-||.+.+.-.. .+...+.||.+
T Consensus 96 --~-~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 96 --L-GRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred --C-CCCcEeEEEEEecCccccCCCCcceEEC
Confidence 2 356789999986443 33445779875
No 116
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=68.68 E-value=1.2 Score=43.12 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=40.9
Q ss_pred HHhhccCchhHHHHHhhhcccccccccccccccccCccEEEeccCccc
Q psy11343 453 FNALQLDSADEQTAAIRRELDNLEGGRYFFNAFKESESILYACDDENE 500 (1150)
Q Consensus 453 ~~~~~~~~~~~~~~~i~~el~~l~ggk~FF~~vkegD~i~fa~dDE~e 500 (1150)
|+.+.+++...+|+.++..++|.|++.|.|.+....+.+.|.++|.+.
T Consensus 25 yv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~ 72 (127)
T cd04027 25 YVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDD 72 (127)
T ss_pred EEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCC
Confidence 666666666778999999999999999999987777899999998774
No 117
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=68.44 E-value=0.94 Score=44.65 Aligned_cols=52 Identities=12% Similarity=-0.027 Sum_probs=45.3
Q ss_pred hhHhHHhhccCchhHHHHHhhh-cccccccccccccccccCccEEEeccCccc
Q psy11343 449 HQLLFNALQLDSADEQTAAIRR-ELDNLEGGRYFFNAFKESESILYACDDENE 500 (1150)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~i~~-el~~l~ggk~FF~~vkegD~i~fa~dDE~e 500 (1150)
.+--|+.+.+++..-+|+.+.+ -+||.|++.|.|.+-...+.|.|.+.|++.
T Consensus 21 ~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~ 73 (121)
T cd04016 21 RMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERA 73 (121)
T ss_pred CCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCC
Confidence 3456999999998889999987 599999999999987667899999999886
No 118
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=68.31 E-value=2.3 Score=41.54 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=18.3
Q ss_pred cceeeeechh--HHHhhhceeEEEE
Q psy11343 155 CGYLFAYGKS--TWRKWKKRYFVLV 177 (1150)
Q Consensus 155 ~gy~~~~g~~--~~kkwk~r~~~lv 177 (1150)
.|||==-|-. .||.||||||+|=
T Consensus 3 ~G~l~k~~g~~r~~K~WkrRwF~L~ 27 (101)
T cd01264 3 EGQLKEKKGRWRFIKRWKTRYFTLS 27 (101)
T ss_pred ceEEeecCccceeeecceeEEEEEe
Confidence 3677666664 8999999999994
No 119
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=66.63 E-value=1.8 Score=41.92 Aligned_cols=65 Identities=12% Similarity=0.024 Sum_probs=49.8
Q ss_pred hHHhhccCchhHHHHHhhhcccccccccccccccc-cCccEEEeccCcccchhhhhHHhhhhcCcccccCCC
Q psy11343 452 LFNALQLDSADEQTAAIRRELDNLEGGRYFFNAFK-ESESILYACDDENEYHLWVMAMYRATGQSHKPTPLN 522 (1150)
Q Consensus 452 ~~~~~~~~~~~~~~~~i~~el~~l~ggk~FF~~vk-egD~i~fa~dDE~er~lwVqamyRatGQs~Kpv~p~ 522 (1150)
-|+.+.+++-..+|+.++..+||.|++.|-|.... .+..+.|.++|.+.. .-.-.|+...|+...
T Consensus 19 pyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~------~~~~lG~~~i~l~~l 84 (121)
T cd08378 19 PVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA------KDDFLGGVCFDLSEV 84 (121)
T ss_pred CEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC------cCceeeeEEEEhHhC
Confidence 47778888888999999999999999999999766 466899999998752 111156666655443
No 120
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=66.43 E-value=1.1 Score=45.69 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=49.6
Q ss_pred hHHhhccCchh-HHHHHhhhcccccccccccccccccCccEEEeccCcccchhhhhHHhhhhcCcccccCC
Q psy11343 452 LFNALQLDSAD-EQTAAIRRELDNLEGGRYFFNAFKESESILYACDDENEYHLWVMAMYRATGQSHKPTPL 521 (1150)
Q Consensus 452 ~~~~~~~~~~~-~~~~~i~~el~~l~ggk~FF~~vkegD~i~fa~dDE~er~lwVqamyRatGQs~Kpv~p 521 (1150)
-|+.+++++.. .||+.++..+||.|++.|.|.+-..+..|.|.++|++... . ...|+...|+..
T Consensus 60 PYv~V~l~~~~~~rT~v~~~~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~----~--~~IG~~~i~l~~ 124 (158)
T cd04015 60 PYATVDLAGARVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDVVG----A--QLIGRAYIPVED 124 (158)
T ss_pred eEEEEEECCeEeeEEEEeCCCCCCccceEEEEEccCCCCEEEEEEEeCCCcC----C--cEEEEEEEEhHH
Confidence 69999999755 4899999999999999999988777789999999876411 0 125666666544
No 121
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=66.34 E-value=19 Score=50.31 Aligned_cols=109 Identities=20% Similarity=0.313 Sum_probs=82.2
Q ss_pred EEEEEEEeeccccccCCCCeEEEEEEeeCCccccccccccc-CCcccccCcccccccc--ceeEEEEeeccCCccccccc
Q psy11343 29 QLEVIVMEVKGLKSLAPNRIVYCTMEVEGGEKLQTDQAEAS-KPMWDTQADFSTNQPL--PAIKVKLFTENPGMLALEDK 105 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~~vyctme~eg~~kl~td~~ea~-~p~w~tq~df~t~~pl--p~~kvkl~~e~~g~l~~edk 105 (1150)
.|-|.|++-++|+.---+---||.+=+..|+|++|.....+ -|.|+.+=.|+-..|= --+.+.+|...+- -+|
T Consensus 1981 ~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f---~kd- 2056 (2102)
T PLN03200 1981 SLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF---GKS- 2056 (2102)
T ss_pred ceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc---CCC-
Confidence 57899999999984334446899999998999999999885 5999998877677762 1488888987732 344
Q ss_pred ccceEEeec--CCCCCCCccccccccCCCCCCcC---ceEEE
Q psy11343 106 ELGKVILRP--TPLSSKAPEWHKMLVPKNCADQD---LKIKI 142 (1150)
Q Consensus 106 elg~v~~~p--~~~~~~~~~~~~m~~~k~~~d~~---l~i~~ 142 (1150)
-+|++.+.- .....+..+||.+. +|+..++. |.|.|
T Consensus 2057 ~~G~~~i~l~~vv~~~~~~~~~~L~-~~~~k~G~~~~~~~e~ 2097 (2102)
T PLN03200 2057 SLGKVTIQIDRVVMEGTYSGEYSLN-PESNKDGSSRTLEIEF 2097 (2102)
T ss_pred CCceEEEEHHHHhcCceeeeeeecC-cccccCCCcceEEEEE
Confidence 799999853 33467888999965 66555555 77665
No 122
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=65.45 E-value=17 Score=34.70 Aligned_cols=93 Identities=11% Similarity=0.097 Sum_probs=63.5
Q ss_pred EEeeccccccCCCCe--EEEEEEeeCCc------ccccccccc-cCCcccccCccc-cccccceeEEEEeeccCC--ccc
Q psy11343 34 VMEVKGLKSLAPNRI--VYCTMEVEGGE------KLQTDQAEA-SKPMWDTQADFS-TNQPLPAIKVKLFTENPG--MLA 101 (1150)
Q Consensus 34 v~ev~~l~~~~~~~~--vyctme~eg~~------kl~td~~ea-~~p~w~tq~df~-t~~plp~~kvkl~~e~~g--~l~ 101 (1150)
.+..+||........ -||.+.+.|+. +.+|..... .-|.|++.-.|. ....+..+++.+|..... .+.
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 356778876665433 59999998875 578887776 589999988886 345677789999887652 122
Q ss_pred ccccccceEEeecCCC--CCCCcccccc
Q psy11343 102 LEDKELGKVILRPTPL--SSKAPEWHKM 127 (1150)
Q Consensus 102 ~edkelg~v~~~p~~~--~~~~~~~~~m 127 (1150)
.|.-+|.+.+..... ......|+.+
T Consensus 86 -~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 86 -DHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred -CCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 456799998854332 2334445554
No 123
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=65.34 E-value=16 Score=35.83 Aligned_cols=85 Identities=16% Similarity=0.308 Sum_probs=57.5
Q ss_pred EEEEEEEeeccccccCCC---CeEEEEEEee--CCccccccccc-ccCCcccccCcccc--ccccc--eeEEEEeeccCC
Q psy11343 29 QLEVIVMEVKGLKSLAPN---RIVYCTMEVE--GGEKLQTDQAE-ASKPMWDTQADFST--NQPLP--AIKVKLFTENPG 98 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~---~~vyctme~e--g~~kl~td~~e-a~~p~w~tq~df~t--~~plp--~~kvkl~~e~~g 98 (1150)
+|.|.|++.+||.....+ --.||.+.+- ++.+.+|.... ..-|.|+..-.|.. ...++ .+++.++....
T Consensus 17 ~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~- 95 (128)
T cd08388 17 ALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR- 95 (128)
T ss_pred EEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC-
Confidence 588999999999875433 2479999994 33556777654 37899999988731 11222 47777776643
Q ss_pred cccccccccceEEeecCC
Q psy11343 99 MLALEDKELGKVILRPTP 116 (1150)
Q Consensus 99 ~l~~edkelg~v~~~p~~ 116 (1150)
++ .|.-||++.+.-..
T Consensus 96 -~~-~d~~lG~~~i~L~~ 111 (128)
T cd08388 96 -YS-RDDVIGEVVCPLAG 111 (128)
T ss_pred -CC-CCceeEEEEEeccc
Confidence 23 46679999886443
No 124
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=63.17 E-value=5.4 Score=39.59 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=32.1
Q ss_pred chhHHHhhhceeEEEEEeeceehhhcccccc---CCCCccccccccceeeec
Q psy11343 162 GKSTWRKWKKRYFVLVQVSQYTFAMCSFKEK---KSDPSEFMQLDGYTVDYI 210 (1150)
Q Consensus 162 g~~~~kkwk~r~~~lvqvsqytfa~cs~~e~---ks~p~e~~ql~g~tvdy~ 210 (1150)
-+.+||.||+|||+|..-+-+ =|+.+ +.+|..-+.|.|-+|+=.
T Consensus 13 ~~~~~K~~KrrwF~lk~~~L~-----YyK~kee~~~~p~i~lnl~gcev~~d 59 (106)
T cd01237 13 KKLTLKGYKQYWFTFRDTSIS-----YYKSKEDSNGAPIGQLNLKGCEVTPD 59 (106)
T ss_pred chhhhhhheeEEEEEeCCEEE-----EEccchhcCCCCeEEEecCceEEccc
Confidence 367899999999999743322 23333 348999999999988754
No 125
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=61.46 E-value=30 Score=38.21 Aligned_cols=163 Identities=13% Similarity=0.163 Sum_probs=101.3
Q ss_pred HHhhccccccCCccccchhhhhHHHHHHHHhccchhHHHHHHHhHhcccccccCCC-ccchHHHHHHHHHHHHhhhcCCC
Q psy11343 827 EYLRADENLKNGRFHQHLREYFAPLVVRYVDLMESSIAQSIHKGFEKEKWEIKGNG-CATSEDLFWKLDALQSFIRDLHW 905 (1150)
Q Consensus 827 eYvr~lp~lKn~vfe~~L~~wFePfV~rWLDenEess~qfL~~AfErDKwep~knG-qqTSEDLF~qLnqlqeFIrkLeW 905 (1150)
..+++.|+-+.++|| ++..-|.--|..|+..+|.+-. +++ ++...++-..++..++++.+|-|
T Consensus 33 ~lL~~lPaaR~AVle-y~~~vf~eaV~~~~~~~E~~~~---------------~~~~~~~~~~~~~ai~ei~~~L~~fv~ 96 (213)
T PF14837_consen 33 SLLRSLPAARDAVLE-YFGLVFDEAVHLYLSPKENDAQ---------------NNKQQQDEADLDEAIQEIHDVLSRFVE 96 (213)
T ss_pred HHHHhCcccHHHHHH-HHHHHHHHHHHHHHHHHhhhhc---------------ccccCCCCccHHHHHHHHHHHHHHHHh
Confidence 378999999999998 5778999999999999885543 344 44455888888999999999988
Q ss_pred CCHHHHHHHHHHHH-HHHHHHHHHHHH--------HHHHHHHHhhhcCcccccccccccccchhhhhhHHHHhhhhhhhh
Q psy11343 906 PDQEFNQHLEQRLK-LMACDMIESCIM--------RTESAFQSWLKKGVSFVSTDYIIHSEMCAMINIIADAKNQSLKLC 976 (1150)
Q Consensus 906 PDpef~ahlm~Rfa-ktISkmIeqYad--------rt~~~F~s~l~Ke~~~~stD~ilP~e~CimmNniqqlRvQleKlc 976 (1150)
-+|.-.+-...--+ .++++.-..|++ .+.+.+.-|+ .|.-|+.++++-+++....
T Consensus 97 ~npkAWap~i~~Wsl~Llgelssk~~~R~~~~~~~~~~e~l~~Wm----------------sc~a~r~L~~i~~~cl~~l 160 (213)
T PF14837_consen 97 ANPKAWAPLISAWSLELLGELSSKYAGRRGVPHSSSLNELLQLWM----------------SCQATRTLMDIYNQCLSKL 160 (213)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHhcCCCcccccccHHHHHHHHH----------------hcHHHHHHHHHHHHHHHHH
Confidence 88885555544433 233444444444 2223333332 2667777777777665442
Q ss_pred hccCCccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhhhhcc
Q psy11343 977 AVDGIDVHQYHIKIDDLIEKTSANMIQGLISKLVAVLENTLAKLSRYDEGSLIGSILSL 1035 (1150)
Q Consensus 977 ~~~gG~e~qyh~~id~~Le~~~~~mls~L~~KL~~VLe~vL~KLSRyDEgsl~sSiLSl 1035 (1150)
- ++ .=|++++.++..-+ +-.-.++=|..-++-...|++++.+|+-
T Consensus 161 ~--~~-----------~~d~Cv~~Ll~tsv-~hsphFDWVvahigs~FP~tIis~lL~~ 205 (213)
T PF14837_consen 161 I--NS-----------CPDACVDALLDTSV-QHSPHFDWVVAHIGSCFPGTIISRLLSC 205 (213)
T ss_pred H--cC-----------CcHHHHHHHHHHHh-ccCCchhhhHHHHHhhCcHHHHHHHHHH
Confidence 2 22 12344444443221 1122355556666666667777766664
No 126
>KOG2180|consensus
Probab=61.01 E-value=1.8e+02 Score=37.35 Aligned_cols=245 Identities=20% Similarity=0.249 Sum_probs=137.9
Q ss_pred HHHHHHHHhhhc-cccccccCCCCc-hhhhhhHHHHHHHh-hhcccCCCCChH-HHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy11343 665 KERLKELLINQI-TNFRYAFPFGRP-EGILKSTLSLLERV-LMKDSVTPVQPE-EVREVIKKCLETAALINYSKLSSEAR 740 (1150)
Q Consensus 665 ldqLhn~LriqL-S~YR~~FPfsrP-E~aLKsTVdLLtsV-rMKv~~~p~ppe-vVrecVKaCLesAa~~nYsr~~e~a~ 740 (1150)
++++..+|..|| ..|..-|+.+.. +-+ .+++.|+-- |.=+.--|++++ .|+.+++.=| .-|..++...
T Consensus 181 i~~~k~~l~~qi~~df~~~F~~~~~~~~~--~~l~~l~daC~v~d~lepsvreelIkwf~~qqL-----~ey~~IF~en- 252 (793)
T KOG2180|consen 181 IDKLKKSLLSQIFQDFKAAFSGGETHEEA--LLLQKLSDACLVVDALEPSVREELIKWFCSQQL-----EEYEQIFREN- 252 (793)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCc--cHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-----HHHHHHHhcc-
Confidence 455666666666 579999998877 222 122222222 222222255443 3455444433 3466776531
Q ss_pred hccccccCCCCCCCchhHHHHHHHHHHHHHhhcchhhhhhhhhhhhHHHH---HHHHHHHHHhHHHHHHHHhcCCCCC-C
Q psy11343 741 VEEDLTAEGGVSPSKKLEDLIHLGELCVDLLQQNEEHYAEAFAWYSDLLV---EHAEIFWSLFAVDMDQVLAEQPSDT-W 816 (1150)
Q Consensus 741 ~E~~~~~e~~~p~~K~Ldfw~kLieLcVsVIeEDke~Yap~fnqFPqeL~---isAEvfWsLFa~DMd~ALEeh~~d~-~ 816 (1150)
+. ...||-+.|=-.-....|...++.|.|.| |-.-+ =-++.|.--=..|+..-|....+.. |
T Consensus 253 --------~E---~a~LDkidrRY~wfKr~L~~fe~k~~~iF---P~dW~v~~RLt~eFc~~Tr~~L~~Il~~~~~~~~v 318 (793)
T KOG2180|consen 253 --------EE---AASLDKLDRRYAWFKRLLRDFEEKWKPIF---PADWHVAYRLTIEFCHQTRKQLESILKRRKKEPDV 318 (793)
T ss_pred --------Hh---hhhhhhHHHHHHHHHHHHHHHHHhccccC---CcccchhHHHHHHHHHHHHHHHHHHHHHhhhCccH
Confidence 11 12344455555566677888888888744 32210 1122333333444444444322111 1
Q ss_pred CC----------c---cHHHHHHHHhhccccccCC-------ccccchhhhhHHHHHHHHhccchhHHHHHHHhHhcccc
Q psy11343 817 DS----------F---PLFQILNEYLRADENLKNG-------RFHQHLREYFAPLVVRYVDLMESSIAQSIHKGFEKEKW 876 (1150)
Q Consensus 817 Ds----------F---kVkwLyNeYvr~lp~lKn~-------vfe~~L~~wFePfV~rWLDenEess~qfL~~AfErDKw 876 (1150)
+- | -=+-|++--+.--|..+.. .||--+...|+|+.--|++.-|...++.+.+.-+-.+|
T Consensus 319 ~lll~Alq~TleFE~~L~kRF~g~~~~~~~~~ns~~~~k~~~~f~~~isScFEPhLtlyI~~qek~l~ellek~v~e~~~ 398 (793)
T KOG2180|consen 319 KLLLFALQSTLEFEKFLDKRFSGGTLTGKPEKNSQFEPKERFNFEGAISSCFEPHLTLYIESQEKELSELLEKFVSEEKW 398 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccccccchhhHHHHhcccchhhhhhHHHHHHHHHHHHHHhhhcc
Confidence 11 1 1111111111122222222 46777899999999999999999999999999999999
Q ss_pred c--ccCC----C--ccchHHHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11343 877 E--IKGN----G--CATSEDLFWKLDALQSFIRDLH-WPDQEFNQHLEQRLKLMACDMIESCIMRTESAF 937 (1150)
Q Consensus 877 e--p~kn----G--qqTSEDLF~qLnqlqeFIrkLe-WPDpef~ahlm~RfaktISkmIeqYadrt~~~F 937 (1150)
. |..+ + -+||.|+|-.+..+..=-.+|. =|||-++ +....++.+..|+..+...+
T Consensus 399 ~~~p~~~~~~~s~vlpSsadlF~~Ykkcltq~~~Ls~n~dpl~~------~~~~f~k~LreYa~kil~~~ 462 (793)
T KOG2180|consen 399 DGEPKSNTDEESLVLPSSADLFVAYKKCLTQCSELSENNDPLIA------LLAVFSKWLREYAQKILLGN 462 (793)
T ss_pred CCCCCCCcccccccCccHHHHHHHHHHHHHHHHHhccCCchHHH------HHHHHHHHHHHHHHHHhhcc
Confidence 6 4332 2 3788899999988877555553 3477443 33467788888887666655
No 127
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=60.89 E-value=61 Score=32.21 Aligned_cols=96 Identities=16% Similarity=0.286 Sum_probs=62.7
Q ss_pred EEEEEEEeeccccccCCCC--eEEEEEEeeCC-----cccccccc-cccCCcccccCcccccc-ccc--eeEEEEeeccC
Q psy11343 29 QLEVIVMEVKGLKSLAPNR--IVYCTMEVEGG-----EKLQTDQA-EASKPMWDTQADFSTNQ-PLP--AIKVKLFTENP 97 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~--~vyctme~eg~-----~kl~td~~-ea~~p~w~tq~df~t~~-plp--~~kvkl~~e~~ 97 (1150)
.|.|.|++.+||+.+.++. -.|..+-+=.+ .+.+|.-. ...-|.|+..=.|.-.. -|+ .+.|.++.-
T Consensus 15 ~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~-- 92 (124)
T cd08680 15 SLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSV-- 92 (124)
T ss_pred EEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeC--
Confidence 6999999999999886553 45666654332 36788776 45789999986664211 123 556666664
Q ss_pred CcccccccccceEEeecCCC---CCCCcccccc
Q psy11343 98 GMLALEDKELGKVILRPTPL---SSKAPEWHKM 127 (1150)
Q Consensus 98 g~l~~edkelg~v~~~p~~~---~~~~~~~~~m 127 (1150)
+-+. .+.-||.|.+...-. ....+.||++
T Consensus 93 ~~~~-~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 93 GPDQ-QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCCC-ceeEEEEEEEEhhhccCCCccccccccC
Confidence 3333 456799999975443 2246778863
No 128
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=59.85 E-value=1.5 Score=45.03 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=42.3
Q ss_pred HhHHhhccCchh-HHHHHhhhcccccccccccccccccCccEEEeccCccc
Q psy11343 451 LLFNALQLDSAD-EQTAAIRRELDNLEGGRYFFNAFKESESILYACDDENE 500 (1150)
Q Consensus 451 ~~~~~~~~~~~~-~~~~~i~~el~~l~ggk~FF~~vkegD~i~fa~dDE~e 500 (1150)
-.|.+++||... -||+.+..++++.|++.|.|++...=..+.|.+..+++
T Consensus 28 ~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~ 78 (146)
T cd04013 28 RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESD 78 (146)
T ss_pred CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccC
Confidence 379999999988 59999999999999999999988776677777754444
No 129
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=58.43 E-value=2.9 Score=41.70 Aligned_cols=49 Identities=8% Similarity=0.152 Sum_probs=40.7
Q ss_pred hHHhhccCchhHHHHHhhhcccccccccccccccc--cCccEEEeccCccc
Q psy11343 452 LFNALQLDSADEQTAAIRRELDNLEGGRYFFNAFK--ESESILYACDDENE 500 (1150)
Q Consensus 452 ~~~~~~~~~~~~~~~~i~~el~~l~ggk~FF~~vk--egD~i~fa~dDE~e 500 (1150)
-|+.+.+++...+|+.++..++|.|++.|.|.... .++.+.|.+||.+.
T Consensus 50 PYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~ 100 (127)
T cd04032 50 GYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN 100 (127)
T ss_pred eEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC
Confidence 36666677778899999999999999999997544 47799999999875
No 130
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=58.18 E-value=2.3 Score=40.50 Aligned_cols=66 Identities=6% Similarity=0.037 Sum_probs=47.1
Q ss_pred HHhhccCc-hhHHHHHhhhcccccccccccccccccCccEEEeccCcccchhhhhHHhhhhcCcccccCCCC
Q psy11343 453 FNALQLDS-ADEQTAAIRRELDNLEGGRYFFNAFKESESILYACDDENEYHLWVMAMYRATGQSHKPTPLNS 523 (1150)
Q Consensus 453 ~~~~~~~~-~~~~~~~i~~el~~l~ggk~FF~~vkegD~i~fa~dDE~er~lwVqamyRatGQs~Kpv~p~~ 523 (1150)
|+-+.++. ...+|++++..+||.|++.|.|......+.+.|.++|.+... -. +-.|+.+.|+....
T Consensus 24 yv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~--~~---~~iG~~~~~l~~l~ 90 (121)
T cd04042 24 YVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL--TD---DFMGSAFVDLSTLE 90 (121)
T ss_pred eEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC--CC---cceEEEEEEHHHcC
Confidence 44455544 455888999999999999999997766789999999986521 00 12577777665443
No 131
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=57.76 E-value=2.4 Score=39.86 Aligned_cols=48 Identities=10% Similarity=0.179 Sum_probs=40.8
Q ss_pred HHhhccCchhHHHHHhhhccccccccccccccccc-CccEEEeccCccc
Q psy11343 453 FNALQLDSADEQTAAIRRELDNLEGGRYFFNAFKE-SESILYACDDENE 500 (1150)
Q Consensus 453 ~~~~~~~~~~~~~~~i~~el~~l~ggk~FF~~vke-gD~i~fa~dDE~e 500 (1150)
|+.+.+++.+.+|+.++.-+||.|++.|-|....+ .+.+.|.++|.+.
T Consensus 24 yv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~ 72 (116)
T cd08376 24 YVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDT 72 (116)
T ss_pred EEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCC
Confidence 66777777788999999999999999999997665 5688899998765
No 132
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=57.63 E-value=33 Score=33.46 Aligned_cols=97 Identities=16% Similarity=0.319 Sum_probs=61.2
Q ss_pred EEEEEEEeeccccccCCC-CeEEEEEEeeCC----cccccccccc-cCCcccccCccccccc-cc-eeEEEEeeccCCcc
Q psy11343 29 QLEVIVMEVKGLKSLAPN-RIVYCTMEVEGG----EKLQTDQAEA-SKPMWDTQADFSTNQP-LP-AIKVKLFTENPGML 100 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~-~~vyctme~eg~----~kl~td~~ea-~~p~w~tq~df~t~~p-lp-~~kvkl~~e~~g~l 100 (1150)
+|+|.|++.+||.....+ ---||.+-+-.+ .+.+|...+. ..|.|+..=.|.-.+. +. .+-|.++.... .
T Consensus 13 ~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~--~ 90 (119)
T cd08685 13 KLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS--K 90 (119)
T ss_pred EEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC--C
Confidence 599999999999776522 246999888654 2446776653 6899998777753221 11 24466665443 3
Q ss_pred cccccccceEEeecCCC--CCCCcccccc
Q psy11343 101 ALEDKELGKVILRPTPL--SSKAPEWHKM 127 (1150)
Q Consensus 101 ~~edkelg~v~~~p~~~--~~~~~~~~~m 127 (1150)
.-++.=||.+.|...-. +...-.||++
T Consensus 91 ~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 91 SRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred cCCCEEEEEEEecHHHhccCccccceEeC
Confidence 33456799998854333 3334588863
No 133
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=56.39 E-value=39 Score=34.33 Aligned_cols=101 Identities=21% Similarity=0.332 Sum_probs=70.6
Q ss_pred EEEEEEEeeccccccCCC----CeEEEEEEeeCCc----ccccccccc-cCCcccccCcccccc-cc--ceeEEEEeecc
Q psy11343 29 QLEVIVMEVKGLKSLAPN----RIVYCTMEVEGGE----KLQTDQAEA-SKPMWDTQADFSTNQ-PL--PAIKVKLFTEN 96 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~----~~vyctme~eg~~----kl~td~~ea-~~p~w~tq~df~t~~-pl--p~~kvkl~~e~ 96 (1150)
+|.|+|++.+||.....+ --.|+.+-+-.+. |.+|.-... .-|.|+..=-|.-.+ -| -.+.+.++...
T Consensus 16 ~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d 95 (138)
T cd08407 16 RLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQD 95 (138)
T ss_pred eEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCC
Confidence 389999999999876522 3578877765542 447887764 569999987775332 12 23667777664
Q ss_pred CCcccccccccceEEeecCCCCCCCccccccccCCC
Q psy11343 97 PGMLALEDKELGKVILRPTPLSSKAPEWHKMLVPKN 132 (1150)
Q Consensus 97 ~g~l~~edkelg~v~~~p~~~~~~~~~~~~m~~~k~ 132 (1150)
. . ..|.-+|+|+|-+...++...-|+.|.-.++
T Consensus 96 ~--~-~~~d~iG~v~lg~~~~g~~~~hW~~ml~~p~ 128 (138)
T cd08407 96 S--P-GQSLPLGRCSLGLHTSGTERQHWEEMLDNPR 128 (138)
T ss_pred C--C-cCcceeceEEecCcCCCcHHHHHHHHHhCCC
Confidence 3 2 2566899999999887777888998865443
No 134
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=55.88 E-value=30 Score=32.37 Aligned_cols=83 Identities=11% Similarity=0.148 Sum_probs=52.7
Q ss_pred EEEeeccccccCCC--CeEEEEEEeeCCc-----ccccccccc-cCCcccccCcccc-----ccccceeEEEEeeccCCc
Q psy11343 33 IVMEVKGLKSLAPN--RIVYCTMEVEGGE-----KLQTDQAEA-SKPMWDTQADFST-----NQPLPAIKVKLFTENPGM 99 (1150)
Q Consensus 33 ~v~ev~~l~~~~~~--~~vyctme~eg~~-----kl~td~~ea-~~p~w~tq~df~t-----~~plp~~kvkl~~e~~g~ 99 (1150)
+.++.+||+..... ---||.+.+.|+. +.+|..... ..|.|+ .-+|.. +.+-..++|.++.....
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~- 82 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS- 82 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC-
Confidence 44566777644322 2359999987653 467777665 589999 333321 22345788888877541
Q ss_pred ccccccccceEEeecCCCCC
Q psy11343 100 LALEDKELGKVILRPTPLSS 119 (1150)
Q Consensus 100 l~~edkelg~v~~~p~~~~~ 119 (1150)
-.|.-+|++.+......+
T Consensus 83 --~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 83 --GKHDLIGEFETTLDELLK 100 (110)
T ss_pred --CCCcEEEEEEEEHHHHhc
Confidence 367889999986554443
No 135
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=55.71 E-value=88 Score=32.28 Aligned_cols=105 Identities=22% Similarity=0.308 Sum_probs=67.2
Q ss_pred EEEEEEEEeeccccccCC-C--CeEEEEEEeeCC----cccccccccc-cCCcccccCccccccccceeEEEEeeccCCc
Q psy11343 28 FQLEVIVMEVKGLKSLAP-N--RIVYCTMEVEGG----EKLQTDQAEA-SKPMWDTQADFSTNQPLPAIKVKLFTENPGM 99 (1150)
Q Consensus 28 f~lev~v~ev~~l~~~~~-~--~~vyctme~eg~----~kl~td~~ea-~~p~w~tq~df~t~~plp~~kvkl~~e~~g~ 99 (1150)
-.|+|.|++.+||..... + ---|+.+-+-.+ .|.+|..+.. .-|.|+..=.|.-.-.-=.+.|.++... +-
T Consensus 29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~-~~ 107 (146)
T cd04028 29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDY-GR 107 (146)
T ss_pred CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCC-CC
Confidence 479999999999986531 1 234777777443 3778887754 6799999988875522224556666432 22
Q ss_pred ccccccccceEEeecCC--CCCCCccccccccCCCCCC
Q psy11343 100 LALEDKELGKVILRPTP--LSSKAPEWHKMLVPKNCAD 135 (1150)
Q Consensus 100 l~~edkelg~v~~~p~~--~~~~~~~~~~m~~~k~~~d 135 (1150)
+. .|.=||.+.+.-.- .......||.+. |++.+.
T Consensus 108 ~~-~~~~iG~~~i~L~~l~~~~~~~~Wy~L~-~~~~~~ 143 (146)
T cd04028 108 MD-KKVFMGVAQILLDDLDLSNLVIGWYKLF-PTSSLV 143 (146)
T ss_pred CC-CCceEEEEEEEcccccCCCCceeEEecC-Cccccc
Confidence 22 34458998875332 234567899964 665553
No 136
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=55.16 E-value=4.3e+02 Score=31.42 Aligned_cols=183 Identities=20% Similarity=0.342 Sum_probs=99.9
Q ss_pred HHHHHHhhhccc-cccccCCCCch------hhhhhHHHHHHHhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy11343 667 RLKELLINQITN-FRYAFPFGRPE------GILKSTLSLLERVLMKDSVTPVQPEEVREVIKKCLETAALINYSKLSSEA 739 (1150)
Q Consensus 667 qLhn~LriqLS~-YR~~FPfsrPE------~aLKsTVdLLtsVrMKv~~~p~ppevVrecVKaCLesAa~~nYsr~~e~a 739 (1150)
+|++.|+.+|.. |...|+.+.++ ..|...|.++..+ .+.+-.++|.-|.+.- +..|.++|...
T Consensus 168 ~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L---------~~~~r~~li~wf~~~q-L~eY~~iF~~~ 237 (383)
T PF04100_consen 168 QLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDAL---------GPDVREELIDWFCNKQ-LKEYRRIFREN 237 (383)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHc---------CchHHHHHHHHHHHHH-HHHHHHHHccc
Confidence 333444444432 66667443322 2366766666643 1223345566665533 56688888531
Q ss_pred hhccccccCCCCCCCchhHHHHHHHHHHHHHhhcchhhhhhhhhhhhHHHH---HHHHHHHHHhHHHHHHHHhcCCCCCC
Q psy11343 740 RVEEDLTAEGGVSPSKKLEDLIHLGELCVDLLQQNEEHYAEAFAWYSDLLV---EHAEIFWSLFAVDMDQVLAEQPSDTW 816 (1150)
Q Consensus 740 ~~E~~~~~e~~~p~~K~Ldfw~kLieLcVsVIeEDke~Yap~fnqFPqeL~---isAEvfWsLFa~DMd~ALEeh~~d~~ 816 (1150)
+.+....|++ |=-.-.-.+|.+-++.|+.+| |..-. .-+..|...=..|+...|...... .
T Consensus 238 ---------~e~~~Ld~i~---RRy~Wfkr~L~~~e~~~~~iF---P~~W~v~~~L~~~Fc~~Tr~dL~~iL~~~~~~-~ 301 (383)
T PF04100_consen 238 ---------DEAASLDNID---RRYAWFKRLLKNFEEKFANIF---PPSWRVPERLCVEFCEITRKDLSEILSKRKSE-L 301 (383)
T ss_pred ---------ccccchhhHH---HHHHHHHHHHHHHHhhccccC---CCcCcHHHHHHHHHHHHHHHHHHHHHhhcCCC-C
Confidence 1122333333 333333456666666666554 33332 223455666688999888663332 1
Q ss_pred CC------------ccHHHHHHHHh---------hcccccc--CCccccchhhhhHHHHHHHHhccchhHHHHHHHhHhc
Q psy11343 817 DS------------FPLFQILNEYL---------RADENLK--NGRFHQHLREYFAPLVVRYVDLMESSIAQSIHKGFEK 873 (1150)
Q Consensus 817 Ds------------FkVkwLyNeYv---------r~lp~lK--n~vfe~~L~~wFePfV~rWLDenEess~qfL~~AfEr 873 (1150)
|. |. +.|-..|- +..+.-+ ...|+-.+..-|+|+.--|++.-|....+.+.+....
T Consensus 302 dv~~Ll~aLq~T~~FE-~~L~~rF~~~~~~~~~~~~~~e~~~~~~~f~g~IS~~FepyL~iyv~~qdk~L~~~l~~~~~~ 380 (383)
T PF04100_consen 302 DVKLLLKALQKTLEFE-KELAKRFAGSTDESQEIEKKKEMKEIAENFKGIISSCFEPYLSIYVDSQDKNLSEKLDKFISE 380 (383)
T ss_pred cHHHHHHHHHHHHHHH-HHHHHHhcccccccccccccccccccccccccchHHhhHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 11 01111220 0000000 1245556889999999999999999999999999999
Q ss_pred ccc
Q psy11343 874 EKW 876 (1150)
Q Consensus 874 DKw 876 (1150)
+||
T Consensus 381 ~~w 383 (383)
T PF04100_consen 381 EKW 383 (383)
T ss_pred cCC
Confidence 988
No 137
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=54.18 E-value=3 Score=42.76 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=43.1
Q ss_pred HhHHhhccCchhHHHHHhhhccccccccccccccccc--CccEEEeccCccc
Q psy11343 451 LLFNALQLDSADEQTAAIRRELDNLEGGRYFFNAFKE--SESILYACDDENE 500 (1150)
Q Consensus 451 ~~~~~~~~~~~~~~~~~i~~el~~l~ggk~FF~~vke--gD~i~fa~dDE~e 500 (1150)
--|+.+.+++.+.+|+.++.-+||.|++.|.|...-+ ++.|.|.++|.+.
T Consensus 36 DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~ 87 (151)
T cd04018 36 DPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDR 87 (151)
T ss_pred CcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCC
Confidence 4688999999899999999999999999999985432 5689999999876
No 138
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=53.71 E-value=2.7 Score=39.60 Aligned_cols=66 Identities=11% Similarity=0.076 Sum_probs=48.5
Q ss_pred hHHhhccCchhHHHHHhhhcccccccccccccccccC-----ccEEEeccCcccchhhhhHHhhhhcCcccccCCC
Q psy11343 452 LFNALQLDSADEQTAAIRRELDNLEGGRYFFNAFKES-----ESILYACDDENEYHLWVMAMYRATGQSHKPTPLN 522 (1150)
Q Consensus 452 ~~~~~~~~~~~~~~~~i~~el~~l~ggk~FF~~vkeg-----D~i~fa~dDE~er~lwVqamyRatGQs~Kpv~p~ 522 (1150)
-|+.+.+++.+.+|+.++.-+++.|++.|.|...... ..+.|.++|.+.. .-..+ .|+...|+...
T Consensus 23 pyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~--~~~~~---iG~~~i~l~~v 93 (111)
T cd04011 23 PVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL--RSDTL---IGSFKLDVGTV 93 (111)
T ss_pred CEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc--ccCCc---cEEEEECCccc
Confidence 3777778888899999999999999999999986543 4788999987642 11222 56666665433
No 139
>PF09921 DUF2153: Uncharacterized protein conserved in archaea (DUF2153); InterPro: IPR014450 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=53.27 E-value=35 Score=35.11 Aligned_cols=30 Identities=33% Similarity=0.546 Sum_probs=24.7
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhhhcC
Q psy11343 915 EQRLKLMA-CDMIESCIMRTESAFQSWLKKG 944 (1150)
Q Consensus 915 m~RfaktI-SkmIeqYadrt~~~F~s~l~Ke 944 (1150)
.-|+..+. +++--+|.-||.++|++|++.-
T Consensus 26 ~DRL~LIl~sr~afqhm~RTlKaFd~WLqdP 56 (126)
T PF09921_consen 26 ADRLDLILSSRAAFQHMMRTLKAFDQWLQDP 56 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 45776654 6788899999999999999875
No 140
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=53.16 E-value=3.3 Score=38.91 Aligned_cols=50 Identities=22% Similarity=0.159 Sum_probs=42.3
Q ss_pred HhHHhhccCchhHHHHHhhhcccccccccccccccccCccEEEeccCccc
Q psy11343 451 LLFNALQLDSADEQTAAIRRELDNLEGGRYFFNAFKESESILYACDDENE 500 (1150)
Q Consensus 451 ~~~~~~~~~~~~~~~~~i~~el~~l~ggk~FF~~vkegD~i~fa~dDE~e 500 (1150)
--|+.+++++...+|+.+++-+||.|+..|-|.+-..++.+.|.++|.+.
T Consensus 23 dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~ 72 (119)
T cd08377 23 DPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDK 72 (119)
T ss_pred CcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCC
Confidence 35777888777789999999999999999999976668899999988764
No 141
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=52.61 E-value=10 Score=36.45 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=32.6
Q ss_pred cceeeee--chhHHH--hhhceeEEEEEeeceehhhccccccC---CCCccccccccceeee
Q psy11343 155 CGYLFAY--GKSTWR--KWKKRYFVLVQVSQYTFAMCSFKEKK---SDPSEFMQLDGYTVDY 209 (1150)
Q Consensus 155 ~gy~~~~--g~~~~k--kwk~r~~~lvqvsqytfa~cs~~e~k---s~p~e~~ql~g~tvdy 209 (1150)
-||||=- |+..+. .||+||||| . .-.++-|+.+. ..|.-.+-|.+.+.-+
T Consensus 3 ~g~l~Kr~~~~~~~~~~nwKkRwFvL-~----~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve 59 (106)
T cd01238 3 ESILVKRSQQKKKTSPLNYKERLFVL-T----KSKLSYYEGDFEKRGSKKGSIDLSKIKCVE 59 (106)
T ss_pred ceeeeeeccCCCCCCCCCceeEEEEE-c----CCEEEEECCCcccccCcceeEECCcceEEE
Confidence 4788855 455444 799999999 2 23355566553 4577778888765444
No 142
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=52.27 E-value=2.7 Score=40.71 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=39.8
Q ss_pred hHHhhccCch-hHHHHHhhhcccccccccccccccccCccEEEeccCccc
Q psy11343 452 LFNALQLDSA-DEQTAAIRRELDNLEGGRYFFNAFKESESILYACDDENE 500 (1150)
Q Consensus 452 ~~~~~~~~~~-~~~~~~i~~el~~l~ggk~FF~~vkegD~i~fa~dDE~e 500 (1150)
-|+.+.+++. ..+|+.++..+||.|++.|.|+.-+....+.|.++|.+.
T Consensus 24 pYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~ 73 (121)
T cd08401 24 CYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDV 73 (121)
T ss_pred cEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCC
Confidence 4777777654 257888999999999999999976555788899888875
No 143
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=51.85 E-value=68 Score=31.45 Aligned_cols=82 Identities=15% Similarity=0.158 Sum_probs=57.3
Q ss_pred EEEEEEEeeccccccCCC--CeEEEEEEeeCC------cccccccccc-cCCcccccCcccccc-----ccceeEEEEee
Q psy11343 29 QLEVIVMEVKGLKSLAPN--RIVYCTMEVEGG------EKLQTDQAEA-SKPMWDTQADFSTNQ-----PLPAIKVKLFT 94 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~--~~vyctme~eg~------~kl~td~~ea-~~p~w~tq~df~t~~-----plp~~kvkl~~ 94 (1150)
+|.|.|++.+||.....+ --.||.+.+.+. .+-+|..... .-|.|+..-.|.-.. .--.+.|.++.
T Consensus 17 ~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d 96 (133)
T cd04009 17 SLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKD 96 (133)
T ss_pred EEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEe
Confidence 588999999999876442 346899988643 4667766654 469999888887432 12367888887
Q ss_pred ccCCcccccccccceEEee
Q psy11343 95 ENPGMLALEDKELGKVILR 113 (1150)
Q Consensus 95 e~~g~l~~edkelg~v~~~ 113 (1150)
.... -.|.-+|++.+.
T Consensus 97 ~d~~---~~d~~iG~~~i~ 112 (133)
T cd04009 97 YDLL---GSNDFEGEAFLP 112 (133)
T ss_pred cCCC---CCCcEeEEEEEe
Confidence 6432 256789999874
No 144
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=51.60 E-value=3.5 Score=38.81 Aligned_cols=49 Identities=8% Similarity=0.066 Sum_probs=42.1
Q ss_pred hHHhhccCc--hhHHHHHhhhcccccccccccccccccCccEEEeccCccc
Q psy11343 452 LFNALQLDS--ADEQTAAIRRELDNLEGGRYFFNAFKESESILYACDDENE 500 (1150)
Q Consensus 452 ~~~~~~~~~--~~~~~~~i~~el~~l~ggk~FF~~vkegD~i~fa~dDE~e 500 (1150)
-|+.+.++. ...+|+.++.-++|.|++.|.|..-..++.+.|.++|.+.
T Consensus 26 pyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~ 76 (124)
T cd04044 26 PYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFND 76 (124)
T ss_pred CeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCC
Confidence 477777776 6788999999999999999999987668899999999875
No 145
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=51.12 E-value=2.8 Score=40.27 Aligned_cols=49 Identities=22% Similarity=0.368 Sum_probs=39.4
Q ss_pred hHHhhccCch-------hHHHHHhhhcccccccccccccccccCccEEEeccCccc
Q psy11343 452 LFNALQLDSA-------DEQTAAIRRELDNLEGGRYFFNAFKESESILYACDDENE 500 (1150)
Q Consensus 452 ~~~~~~~~~~-------~~~~~~i~~el~~l~ggk~FF~~vkegD~i~fa~dDE~e 500 (1150)
-|+.+.+++. ..+|+.++..+||.|+..|.|.....+..+.|.++|.+.
T Consensus 23 pyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~ 78 (133)
T cd04033 23 PYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENR 78 (133)
T ss_pred cEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCC
Confidence 3666666543 358889999999999999999987767788999998864
No 146
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=49.97 E-value=4.1 Score=38.13 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=41.1
Q ss_pred hHHhhccCchhHHHHHhhhcccccccccccccccc-cCccEEEeccCccc
Q psy11343 452 LFNALQLDSADEQTAAIRRELDNLEGGRYFFNAFK-ESESILYACDDENE 500 (1150)
Q Consensus 452 ~~~~~~~~~~~~~~~~i~~el~~l~ggk~FF~~vk-egD~i~fa~dDE~e 500 (1150)
-|+.+.+++...+|+.++..++|.|++.|.|.+.. +++.+.|.++|.+.
T Consensus 30 Pyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~ 79 (121)
T cd08391 30 PYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP 79 (121)
T ss_pred CEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence 36777777777899999999999999999998875 46788999998865
No 147
>KOG1030|consensus
Probab=49.69 E-value=32 Score=36.85 Aligned_cols=92 Identities=23% Similarity=0.335 Sum_probs=69.5
Q ss_pred EEEEEEeeccccccCC--CCeEEEEEEeeCCcccccccccc-cCCcccccCccccccccceeEEEEeeccCCcccccccc
Q psy11343 30 LEVIVMEVKGLKSLAP--NRIVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTNQPLPAIKVKLFTENPGMLALEDKE 106 (1150)
Q Consensus 30 lev~v~ev~~l~~~~~--~~~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~~plp~~kvkl~~e~~g~l~~edke 106 (1150)
|+|.|.-..||+--.- +-==||..|+ |++|++|--..- --|.|+.---|+-+.|...+||++|.+.+. +-+| -
T Consensus 8 L~v~v~~g~~L~~rD~~~sSDPyVVl~l-g~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~f--s~dD-~ 83 (168)
T KOG1030|consen 8 LRVRVKRGKNLAIRDFLGSSDPYVVLEL-GNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTF--SSDD-F 83 (168)
T ss_pred EEEEEEeecCeeeeccccCCCCeEEEEE-CCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCC--Cccc-c
Confidence 6677776666643221 1124999998 589999995554 469999999999999999999999999874 4455 4
Q ss_pred cceEEeecCCCCCCCcccc
Q psy11343 107 LGKVILRPTPLSSKAPEWH 125 (1150)
Q Consensus 107 lg~v~~~p~~~~~~~~~~~ 125 (1150)
+|++.+.--|.-.-...||
T Consensus 84 mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 84 MGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred cceeeeccHHHHHHhhhhc
Confidence 9999997666666666666
No 148
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=49.64 E-value=5.5 Score=37.53 Aligned_cols=64 Identities=11% Similarity=0.068 Sum_probs=46.8
Q ss_pred hHHhhccCchhHHHHHhhh-cccccccccccccccccC-ccEEEeccCcccchhhhhHHhhhhcCcccccCC
Q psy11343 452 LFNALQLDSADEQTAAIRR-ELDNLEGGRYFFNAFKES-ESILYACDDENEYHLWVMAMYRATGQSHKPTPL 521 (1150)
Q Consensus 452 ~~~~~~~~~~~~~~~~i~~-el~~l~ggk~FF~~vkeg-D~i~fa~dDE~er~lwVqamyRatGQs~Kpv~p 521 (1150)
-|+.+.+++...+|..+.+ -+||.|++.|-|...... +.+.|.++|.+... - +-.|+...|+..
T Consensus 24 pyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~---~---~~iG~~~~~l~~ 89 (118)
T cd08681 24 PYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK---P---DLIGDTEVDLSP 89 (118)
T ss_pred ceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC---C---cceEEEEEecHH
Confidence 4777888888888998866 699999999999876644 47889999976421 1 115666655543
No 149
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=49.31 E-value=4 Score=39.69 Aligned_cols=48 Identities=4% Similarity=0.095 Sum_probs=40.0
Q ss_pred hHHhhccCch-hHHHHHhhhcccccccccccccccccCccEEEeccCccc
Q psy11343 452 LFNALQLDSA-DEQTAAIRRELDNLEGGRYFFNAFKESESILYACDDENE 500 (1150)
Q Consensus 452 ~~~~~~~~~~-~~~~~~i~~el~~l~ggk~FF~~vkegD~i~fa~dDE~e 500 (1150)
-|+.+.+++. ..+|+.++..++|.|+..|.|.+ .+++.+.|.++|.+.
T Consensus 24 Pyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~-~~~~~l~~~V~d~~~ 72 (125)
T cd04021 24 PYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLV-TPQSTLEFKVWSHHT 72 (125)
T ss_pred eEEEEEECCcccEEeeeeCCCCCCccccEEEEEe-CCCCEEEEEEEeCCC
Confidence 4666666655 67888899999999999999995 688999999999875
No 150
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=48.37 E-value=4.1 Score=39.22 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=37.8
Q ss_pred HHhhccCch-hHHHHHhhhcccccccccccccccccCccEEEeccCccc
Q psy11343 453 FNALQLDSA-DEQTAAIRRELDNLEGGRYFFNAFKESESILYACDDENE 500 (1150)
Q Consensus 453 ~~~~~~~~~-~~~~~~i~~el~~l~ggk~FF~~vkegD~i~fa~dDE~e 500 (1150)
|+.+.+++. ..+|+.++..+||.|++.|.|........+.|.++|.+.
T Consensus 24 Yv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~ 72 (121)
T cd04054 24 YCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDT 72 (121)
T ss_pred eEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCC
Confidence 666666543 248999999999999999999875444688899988874
No 151
>KOG2059|consensus
Probab=47.72 E-value=63 Score=41.16 Aligned_cols=127 Identities=20% Similarity=0.339 Sum_probs=83.4
Q ss_pred EEEEEEEEeeccccccCCC--CeEEEEEEeeCCccccccccccc-CCcccccCccccccccceeEEEEeeccCCcccccc
Q psy11343 28 FQLEVIVMEVKGLKSLAPN--RIVYCTMEVEGGEKLQTDQAEAS-KPMWDTQADFSTNQPLPAIKVKLFTENPGMLALED 104 (1150)
Q Consensus 28 f~lev~v~ev~~l~~~~~~--~~vyctme~eg~~kl~td~~ea~-~p~w~tq~df~t~~plp~~kvkl~~e~~g~l~~ed 104 (1150)
=+|.|-|.|.|||-+-.|. |=+|||+-||..+-.+|-.+|-| -|.|+..--|--.-..-.+.+-++.|. +. -|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d---~~-~D 80 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD---LK-RD 80 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc---cc-cc
Confidence 3688999999999776554 66999999999999999999986 599987544433333346788888888 33 47
Q ss_pred cccceEEeec--CCCCCCCcccccccc-CCCCCC-cCceEEEEEEecCCCCCccccee
Q psy11343 105 KELGKVILRP--TPLSSKAPEWHKMLV-PKNCAD-QDLKIKIACRMEKPLNMKHCGYL 158 (1150)
Q Consensus 105 kelg~v~~~p--~~~~~~~~~~~~m~~-~k~~~d-~~l~i~~~~~m~kp~n~k~~gy~ 158 (1150)
+-+|||-|.- -..-|-.-.|..++. -.++.= +.+.+.+++.=.--.++--|+-|
T Consensus 81 ~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L 138 (800)
T KOG2059|consen 81 DIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVL 138 (800)
T ss_pred cccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccCCCcchhhhh
Confidence 8899999952 122235567888642 222211 12344444433344555556544
No 152
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=46.99 E-value=3.6 Score=39.68 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=47.5
Q ss_pred HHhhccCc--hhHHHHHhhhcccccccccccccccccCccEEEeccCcccchhhhhHHhhhhcCcccccCCC
Q psy11343 453 FNALQLDS--ADEQTAAIRRELDNLEGGRYFFNAFKESESILYACDDENEYHLWVMAMYRATGQSHKPTPLN 522 (1150)
Q Consensus 453 ~~~~~~~~--~~~~~~~i~~el~~l~ggk~FF~~vkegD~i~fa~dDE~er~lwVqamyRatGQs~Kpv~p~ 522 (1150)
|+.+.++. .+.+|+.++.-+||.|++.|.|..-.+.+.+.|.++|.+... -..+ .|+...|+...
T Consensus 21 yv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~--~~~~---lG~~~i~l~~l 87 (126)
T cd08678 21 YCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS--DSKF---LGLAIVPFDEL 87 (126)
T ss_pred EEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC--CCce---EEEEEEeHHHh
Confidence 66666663 346899999999999999999997656778999999988731 1112 57766665543
No 153
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=46.50 E-value=4.2 Score=40.73 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=41.0
Q ss_pred hHhHHhhccCc-----hhHHHHHhhhcccccccccccccccccCccEEEeccCcc
Q psy11343 450 QLLFNALQLDS-----ADEQTAAIRRELDNLEGGRYFFNAFKESESILYACDDEN 499 (1150)
Q Consensus 450 ~~~~~~~~~~~-----~~~~~~~i~~el~~l~ggk~FF~~vkegD~i~fa~dDE~ 499 (1150)
.-.|+.+.++. .+.+|++|+.-+||.|++.|.|.. ...+.+.|-|+|.+
T Consensus 15 sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l-~~s~~L~~~v~d~~ 68 (118)
T cd08686 15 ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIEL-EGSQTLRILCYEKC 68 (118)
T ss_pred CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEe-CCCCEEEEEEEEcc
Confidence 34688887764 347899999999999999999995 56889999999974
No 154
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=46.16 E-value=4.9 Score=38.14 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=40.4
Q ss_pred HHhhccCchhHHHHHhhhcccccccccccccccc-cCccEEEeccCccc
Q psy11343 453 FNALQLDSADEQTAAIRRELDNLEGGRYFFNAFK-ESESILYACDDENE 500 (1150)
Q Consensus 453 ~~~~~~~~~~~~~~~i~~el~~l~ggk~FF~~vk-egD~i~fa~dDE~e 500 (1150)
|+.+.+++...+|+.++..++|.|+..|-|..-. .++.+.|.++|.+.
T Consensus 27 yv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~ 75 (128)
T cd04024 27 YAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDR 75 (128)
T ss_pred eEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCC
Confidence 5566667777889999999999999999998876 57789999998775
No 155
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=45.06 E-value=16 Score=31.98 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=32.5
Q ss_pred cccccccccccccCc-cEEEeccCcccchhhhhHHhhhh
Q psy11343 475 LEGGRYFFNAFKESE-SILYACDDENEYHLWVMAMYRAT 512 (1150)
Q Consensus 475 l~ggk~FF~~vkegD-~i~fa~dDE~er~lwVqamyRat 512 (1150)
.....+.|.....+. ++.|.+++++++..|++++-.|+
T Consensus 65 ~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 65 NKKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp TSSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 346788888888887 99999999999999999996653
No 156
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=44.87 E-value=12 Score=32.02 Aligned_cols=51 Identities=25% Similarity=0.498 Sum_probs=30.4
Q ss_pred ccceeeeechhH---HHhhhceeEEEEEeeceehhhccccccCCCCcccccccccee
Q psy11343 154 HCGYLFAYGKST---WRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTV 207 (1150)
Q Consensus 154 ~~gy~~~~g~~~---~kkwk~r~~~lvqvsqytfa~cs~~e~ks~p~e~~ql~g~tv 207 (1150)
.+|++.-.|... |+.|++||++|= --...+++-+..+......+-+.+.+|
T Consensus 1 ~~g~l~~~~~~~~~~~~~w~~~~~~l~---~~~l~~~~~~~~~~~~~~~~~l~~~~v 54 (99)
T cd00900 1 KEGYLLKLGSDDVSKGKRWKRRWFFLF---DDGLLLYKSDDKKEIKPGSIPLSEISV 54 (99)
T ss_pred CccEEEEeCCCccccccCceeeEEEEE---CCEEEEEEcCCCCcCCCCEEEccceEE
Confidence 367888888775 899999999983 333444444332222113455555553
No 157
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=44.00 E-value=78 Score=32.56 Aligned_cols=99 Identities=15% Similarity=0.261 Sum_probs=61.9
Q ss_pred EEEEEEEeeccccccCCCC--eEEEEEEeeCC----ccccccccccc--CCcccccCccccccccceeEEEEeeccCCcc
Q psy11343 29 QLEVIVMEVKGLKSLAPNR--IVYCTMEVEGG----EKLQTDQAEAS--KPMWDTQADFSTNQPLPAIKVKLFTENPGML 100 (1150)
Q Consensus 29 ~lev~v~ev~~l~~~~~~~--~vyctme~eg~----~kl~td~~ea~--~p~w~tq~df~t~~plp~~kvkl~~e~~g~l 100 (1150)
.|-|+|++.+||+.+..+. --|+-+++=++ .|..|.-...+ -|.|+..=-|.-..++. .|.|--+.-.--
T Consensus 15 rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~--~v~l~v~v~d~~ 92 (135)
T cd08692 15 RIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEH--GIQFLIKLYSRS 92 (135)
T ss_pred eEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhh--eeEEEEEEEeCC
Confidence 4889999999998764332 15888777654 45677776665 48899876666555444 444433322221
Q ss_pred cc-cccccceEEeecCCCCC-CCcccccccc
Q psy11343 101 AL-EDKELGKVILRPTPLSS-KAPEWHKMLV 129 (1150)
Q Consensus 101 ~~-edkelg~v~~~p~~~~~-~~~~~~~m~~ 129 (1150)
.. .+.=+|+|+|-+...++ ..--|..|.-
T Consensus 93 ~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~ 123 (135)
T cd08692 93 SVRRKHFLGQVWISSDSSSSEAVEQWKDTIA 123 (135)
T ss_pred CCcCCceEEEEEECCccCCchhhhhHHHHHh
Confidence 22 23449999998865333 3556888754
No 158
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=42.39 E-value=7.4 Score=36.86 Aligned_cols=56 Identities=7% Similarity=0.076 Sum_probs=40.7
Q ss_pred hhHHHHHhhhccccccccccccccccc----CccEEEeccCcccchhhhhHHhhhhcCcccccCC
Q psy11343 461 ADEQTAAIRRELDNLEGGRYFFNAFKE----SESILYACDDENEYHLWVMAMYRATGQSHKPTPL 521 (1150)
Q Consensus 461 ~~~~~~~i~~el~~l~ggk~FF~~vke----gD~i~fa~dDE~er~lwVqamyRatGQs~Kpv~p 521 (1150)
...+|+.++.-+||.|++.|-|..+.. ...+.|.++|.+... -..+ .|+...|+..
T Consensus 53 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~--~~~~---iG~~~i~l~~ 112 (125)
T cd04031 53 SKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDG--ENDF---LGEVVIDLAD 112 (125)
T ss_pred ccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCC--CCcE---eeEEEEeccc
Confidence 466899999999999999999997763 457889999976421 1111 5666666554
No 159
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=41.90 E-value=6.2 Score=38.43 Aligned_cols=48 Identities=10% Similarity=0.263 Sum_probs=35.5
Q ss_pred hHHhhccCchh-HHHHHhhhcccccccccccccccccC-ccEEEeccCccc
Q psy11343 452 LFNALQLDSAD-EQTAAIRRELDNLEGGRYFFNAFKES-ESILYACDDENE 500 (1150)
Q Consensus 452 ~~~~~~~~~~~-~~~~~i~~el~~l~ggk~FF~~vkeg-D~i~fa~dDE~e 500 (1150)
-|+.+.+++.. .+|+. .+-+||.|++.|.|.+.... +.+.|.++|.+.
T Consensus 24 PYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~ 73 (126)
T cd08400 24 PYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAK 73 (126)
T ss_pred eeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCC
Confidence 47888888644 46764 56899999999999865443 467788887654
No 160
>PLN03008 Phospholipase D delta
Probab=41.81 E-value=6.4 Score=50.31 Aligned_cols=50 Identities=8% Similarity=0.129 Sum_probs=43.5
Q ss_pred HhHHhhccCchhH-HHHHhhhcccccccccccccccccCccEEEeccCccc
Q psy11343 451 LLFNALQLDSADE-QTAAIRRELDNLEGGRYFFNAFKESESILYACDDENE 500 (1150)
Q Consensus 451 ~~~~~~~~~~~~~-~~~~i~~el~~l~ggk~FF~~vkegD~i~fa~dDE~e 500 (1150)
-.|+++.|++.+. ||+.++.++||.|++.|.|.+-.....|.|.+.|.|-
T Consensus 78 DPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~ 128 (868)
T PLN03008 78 DPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDV 128 (868)
T ss_pred CceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCc
Confidence 4799999998643 8999999999999999999987767799999999654
No 161
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=40.43 E-value=7.2 Score=37.49 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=41.2
Q ss_pred hHHhhccCchhHHHHHhhhcccccccccccccccc---cCccEEEeccCccc
Q psy11343 452 LFNALQLDSADEQTAAIRRELDNLEGGRYFFNAFK---ESESILYACDDENE 500 (1150)
Q Consensus 452 ~~~~~~~~~~~~~~~~i~~el~~l~ggk~FF~~vk---egD~i~fa~dDE~e 500 (1150)
-|+.+.+++.+.+|+.++..+||.|++.|-|..-. ++..+.|.++|.+.
T Consensus 17 pyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~ 68 (127)
T cd08373 17 RIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK 68 (127)
T ss_pred CEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC
Confidence 36667777778899999999999999999999865 46788999999864
No 162
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=39.77 E-value=16 Score=37.00 Aligned_cols=48 Identities=38% Similarity=0.531 Sum_probs=30.7
Q ss_pred ceeeee--chhHHHhhhceeEEEEEeeceehhhccccccCCCCccc---cccccceeeec
Q psy11343 156 GYLFAY--GKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEF---MQLDGYTVDYI 210 (1150)
Q Consensus 156 gy~~~~--g~~~~kkwk~r~~~lvqvsqytfa~cs~~e~ks~p~e~---~ql~g~tvdy~ 210 (1150)
|+||.- || |.||||||+|==---| ++=+.|..+|..+ ++++|-.|=+.
T Consensus 4 g~LylK~~gk---KsWKk~~f~LR~SGLY----y~~Kgksk~srdL~cl~~f~~~nvY~~ 56 (114)
T cd01259 4 GPLYLKADGK---KSWKKYYFVLRSSGLY----YFPKEKTKNTRDLACLNLLHGHNVYTG 56 (114)
T ss_pred ceEEEccCCC---ccceEEEEEEeCCeeE----EccCCCcCCHHHHHHHHhcccCcEEEE
Confidence 777764 55 6789999999432223 4567777777754 55666555443
No 163
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=39.75 E-value=5.9 Score=37.42 Aligned_cols=49 Identities=16% Similarity=0.277 Sum_probs=41.1
Q ss_pred hHHhhccCchhHHHHHhhhcccccc-ccccccccccc---CccEEEeccCccc
Q psy11343 452 LFNALQLDSADEQTAAIRRELDNLE-GGRYFFNAFKE---SESILYACDDENE 500 (1150)
Q Consensus 452 ~~~~~~~~~~~~~~~~i~~el~~l~-ggk~FF~~vke---gD~i~fa~dDE~e 500 (1150)
-|+.+.+++...+|+.++..++|.| ++.|-|..-.+ .+.+.|.++|.+.
T Consensus 23 pyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~ 75 (110)
T cd08688 23 AFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT 75 (110)
T ss_pred ceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC
Confidence 4788888888889999999999999 99999986543 2578899999764
No 164
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=39.71 E-value=1.7e+02 Score=34.39 Aligned_cols=115 Identities=19% Similarity=0.396 Sum_probs=70.9
Q ss_pred EEEEeeccccccCCCCeEEEEEEeeCCcccccccccc-cCCcccccCccccc---------cccceeEEEEeeccCCccc
Q psy11343 32 VIVMEVKGLKSLAPNRIVYCTMEVEGGEKLQTDQAEA-SKPMWDTQADFSTN---------QPLPAIKVKLFTENPGMLA 101 (1150)
Q Consensus 32 v~v~ev~~l~~~~~~~~vyctme~eg~~kl~td~~ea-~~p~w~tq~df~t~---------~plp~~kvkl~~e~~g~l~ 101 (1150)
|.|.|-+|.-.. |+.-+.+.-=.+ |+-|.||.++. +.|.|+|-=-+-+. |-.| ||+..|+-.++-
T Consensus 4 l~i~egr~F~~~-~~~~~vv~a~~n-g~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tP-iKl~c~a~~~~~-- 78 (340)
T PF12416_consen 4 LSILEGRNFPQR-PRHPIVVEAKFN-GESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTP-IKLQCFAVDGST-- 78 (340)
T ss_pred EEEecccCCCCC-CCccEEEEEEeC-CceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCc-eEEEEEEecCCC--
Confidence 456777777666 456666766676 89999998886 67777665433221 2222 788888876332
Q ss_pred ccccccceEEeecCCC-------CCCCccccccccCCC-CCCcCceEEEEEEecCCCC
Q psy11343 102 LEDKELGKVILRPTPL-------SSKAPEWHKMLVPKN-CADQDLKIKIACRMEKPLN 151 (1150)
Q Consensus 102 ~edkelg~v~~~p~~~-------~~~~~~~~~m~~~k~-~~d~~l~i~~~~~m~kp~n 151 (1150)
..-+.+|-|+|-=-.. ....|.||+++--++ ..-..-+|+|++++|+=.+
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 3446789888842111 247899999976633 1122345566666655433
No 165
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=39.44 E-value=8 Score=38.51 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=40.4
Q ss_pred HHhhccCchhHHHHHhhhcccccccccccccccc-cCccEEEeccCccc
Q psy11343 453 FNALQLDSADEQTAAIRRELDNLEGGRYFFNAFK-ESESILYACDDENE 500 (1150)
Q Consensus 453 ~~~~~~~~~~~~~~~i~~el~~l~ggk~FF~~vk-egD~i~fa~dDE~e 500 (1150)
|+-+.+++...+|..++.-+||.|+..|.|.+-. ..+.+.|.++|.+.
T Consensus 39 Yv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~ 87 (136)
T cd08375 39 YCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF 87 (136)
T ss_pred EEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence 6667778888899999999999999999998754 35688999999874
No 166
>KOG0696|consensus
Probab=38.97 E-value=16 Score=43.96 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=39.2
Q ss_pred HHhhcc-----CchhHHHHHhhhcccccccccccccccccCc---cEEEeccCccc
Q psy11343 453 FNALQL-----DSADEQTAAIRRELDNLEGGRYFFNAFKESE---SILYACDDENE 500 (1150)
Q Consensus 453 ~~~~~~-----~~~~~~~~~i~~el~~l~ggk~FF~~vkegD---~i~fa~dDE~e 500 (1150)
|++|+| +..++.|+||+.-||++|++.|=|++ ++|| ++.+.+||=|-
T Consensus 204 Yvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~L-kp~DkdrRlsiEvWDWDr 258 (683)
T KOG0696|consen 204 YVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKL-KPSDKDRRLSIEVWDWDR 258 (683)
T ss_pred ceeEEeccCCcchhhhhhhhhhhhcCccccceeEEec-ccccccceeEEEEecccc
Confidence 778876 46788999999999999999999985 6666 78888888554
No 167
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=38.38 E-value=7.8 Score=37.70 Aligned_cols=64 Identities=8% Similarity=0.089 Sum_probs=44.9
Q ss_pred HHhhccC-----chhHHHHHhhhcccccccccccccccc----cCccEEEeccCcccchhhhhHHhhhhcCcccccCC
Q psy11343 453 FNALQLD-----SADEQTAAIRRELDNLEGGRYFFNAFK----ESESILYACDDENEYHLWVMAMYRATGQSHKPTPL 521 (1150)
Q Consensus 453 ~~~~~~~-----~~~~~~~~i~~el~~l~ggk~FF~~vk----egD~i~fa~dDE~er~lwVqamyRatGQs~Kpv~p 521 (1150)
|+-+.+. ..+.+|+.++.-+||.|++.|-|..+. .+..+.|.++|.+.- .--.+ .|+...|+..
T Consensus 36 yVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~--~~~~~---lG~~~i~l~~ 108 (122)
T cd08381 36 YVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSL--VENEF---LGGVCIPLKK 108 (122)
T ss_pred EEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCC--cCCcE---EEEEEEeccc
Confidence 6666664 346789999999999999999998733 355888999987641 11111 5666666543
No 168
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=38.08 E-value=5.8 Score=38.22 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=46.2
Q ss_pred hHHhhccCchhHHHHHhhhcccccccccccccccccC----ccEEEeccCcccchhhhhHHhhhhcCcccccC
Q psy11343 452 LFNALQLDSADEQTAAIRRELDNLEGGRYFFNAFKES----ESILYACDDENEYHLWVMAMYRATGQSHKPTP 520 (1150)
Q Consensus 452 ~~~~~~~~~~~~~~~~i~~el~~l~ggk~FF~~vkeg----D~i~fa~dDE~er~lwVqamyRatGQs~Kpv~ 520 (1150)
-|+-+.+++.+.+|+.++..+||.|++.|-|.+.... ..+.|.++|.+--. +-..+ .|+...|+.
T Consensus 23 pyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~-~~d~~---lG~v~i~l~ 91 (127)
T cd04022 23 AYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG-RRRSF---LGRVRISGT 91 (127)
T ss_pred cEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc-CCCCe---eeEEEEcHH
Confidence 3666777888889999999999999999999987542 36889898865311 11111 577666654
No 169
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=37.71 E-value=6.8 Score=37.17 Aligned_cols=50 Identities=10% Similarity=0.061 Sum_probs=39.7
Q ss_pred HhHHhhccCc-hhHHHHHhhhcccccccccccccccccC-ccEEEeccCccc
Q psy11343 451 LLFNALQLDS-ADEQTAAIRRELDNLEGGRYFFNAFKES-ESILYACDDENE 500 (1150)
Q Consensus 451 ~~~~~~~~~~-~~~~~~~i~~el~~l~ggk~FF~~vkeg-D~i~fa~dDE~e 500 (1150)
--|+.+++++ ...+|+.++..+||.|++.|-|.+.... +.+.|.+.|.+.
T Consensus 14 dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~ 65 (111)
T cd04052 14 SPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRD 65 (111)
T ss_pred CceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCC
Confidence 3588899976 3468888999999999999988875543 458888888775
No 170
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=37.63 E-value=14 Score=35.78 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=23.3
Q ss_pred chhHHHhhhceeEEEEEeeceehhhccccccCCCCcccccccc
Q psy11343 162 GKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDG 204 (1150)
Q Consensus 162 g~~~~kkwk~r~~~lvqvsqytfa~cs~~e~ks~p~e~~ql~g 204 (1150)
|+..-+.||||||+|= .-.++-|+.++..|...+.|..
T Consensus 14 ~~~~~~n~KkRwF~Lt-----~~~L~Y~k~~~~~~~g~I~L~~ 51 (98)
T cd01244 14 AWKKVLHFKKRYFQLT-----TTHLSWAKDVQCKKSALIKLAA 51 (98)
T ss_pred CCccCcCCceeEEEEC-----CCEEEEECCCCCceeeeEEccc
Confidence 3344479999999994 2334445555666665555543
No 171
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=37.04 E-value=8.4 Score=37.34 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=47.1
Q ss_pred HHhhccCchhHHHHHhhhcccccccccccccccccCccEEEeccCcccchhhhhHHhhhhcCcccccCC
Q psy11343 453 FNALQLDSADEQTAAIRRELDNLEGGRYFFNAFKESESILYACDDENEYHLWVMAMYRATGQSHKPTPL 521 (1150)
Q Consensus 453 ~~~~~~~~~~~~~~~i~~el~~l~ggk~FF~~vkegD~i~fa~dDE~er~lwVqamyRatGQs~Kpv~p 521 (1150)
|+.+.+++...+|+.++.-++|.|++.|.|...+++..|.|.++|.+. +. -.-.|...-++.+
T Consensus 27 yv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~--~~----d~~lG~~~~~l~~ 89 (126)
T cd04046 27 YVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNL--LC----DEFLGQATLSADP 89 (126)
T ss_pred cEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCC--CC----CCceEEEEEeccc
Confidence 555556666778999999999999999999887777789999999753 11 1225776666654
No 172
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=36.99 E-value=7.3 Score=37.35 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=37.6
Q ss_pred HHhhccCchhHHHHHhhhccccccccccccccccc-C-ccEEEeccCccc
Q psy11343 453 FNALQLDSADEQTAAIRRELDNLEGGRYFFNAFKE-S-ESILYACDDENE 500 (1150)
Q Consensus 453 ~~~~~~~~~~~~~~~i~~el~~l~ggk~FF~~vke-g-D~i~fa~dDE~e 500 (1150)
|+.+.+++-..+|+.++..+||.|++.|-|..... . ..|.|.++|.+.
T Consensus 29 Yv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~ 78 (108)
T cd04039 29 FVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK 78 (108)
T ss_pred eEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC
Confidence 66667777677899999999999999999975432 2 267889988764
No 173
>PF06861 BALF1: BALF1 protein; InterPro: IPR010677 Epstein-Barr virus (strain GD1) (HHV-4), a human tumour DNA virus and a prominent member of gamma-herpesviruses, encodes homologues of cellular antiapoptotic viral Bcl-2 proteins BALF1 and BHRF1. They protect the virus from apoptosis in its host cell during virus synthesis [, ]. The virus infects B lymphocytes to establish a latent infection and yield proliferating, growth-transformed B cells in vitro. Bcl-2 genes are essential for the initial evasion of apoptosis which allows it to establish a latent infection or cause cellular transformation, or both []. Bcl-2 family proteins can inhibit or induce programmed cell death in part by counteracting the activity of other BCL-2 family members. BALF1, inhibits the antiapoptotic activity of EBV BHRF1 and of KSBcl-2 in several transfected cell lines. BALF1 fails, however, to inhibit the cellular BCL-2 family member, BCL-x(L). Thus, BALF1 acts as a negative regulator of the survival function of BHRF1, similar to the counterbalance observed between cellular BCL-2 family members [].
Probab=36.39 E-value=1.7e+02 Score=31.91 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=33.6
Q ss_pred CchhhhhhHHHHHHHhh------hcccCCCCChHHHHHHHHHHHHHHHH
Q psy11343 687 RPEGILKSTLSLLERVL------MKDSVTPVQPEEVREVIKKCLETAAL 729 (1150)
Q Consensus 687 rPE~aLKsTVdLLtsVr------MKv~~~p~ppevVrecVKaCLesAa~ 729 (1150)
-|+.-+..|.+||.++. ++ ..+|.+..++-.+||+|++.-..
T Consensus 24 ~~~d~~~~~s~ll~r~~~Av~~~d~-~~Lt~~E~lL~~LVk~~iKk~~~ 71 (182)
T PF06861_consen 24 PPDDEVSETSYLLFRAMIAVLLDDP-TGLTTEEALLCWLVKQSIKKNFK 71 (182)
T ss_pred CchhhHHHHHHHHHHHHHHHHcCCc-ccCCcHHHHHHHHHHHHHHHHHH
Confidence 44555999999999993 55 66888889999999999987653
No 174
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=36.18 E-value=7.4 Score=39.26 Aligned_cols=81 Identities=11% Similarity=0.109 Sum_probs=52.4
Q ss_pred hhHHHHHhhhcccccc-cccccccccccCccEEEeccCcccchhh-hhHHhhhhcCcccccCCCCCcccccccc---ccc
Q psy11343 461 ADEQTAAIRRELDNLE-GGRYFFNAFKESESILYACDDENEYHLW-VMAMYRATGQSHKPTPLNSNAVKNSTIS---KLQ 535 (1150)
Q Consensus 461 ~~~~~~~i~~el~~l~-ggk~FF~~vkegD~i~fa~dDE~er~lw-VqamyRatGQs~Kpv~p~~~~~~~~tm~---~~~ 535 (1150)
...+|+.++.-+||.| ++.|.|.+. +.|.+.|.++|.+...-- .. +-.|+...|+...-.......+. ..+
T Consensus 45 ~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~v~V~D~~~~~~~~~~---d~lG~~~i~l~~l~~~~~~~~~~~~~~l~ 120 (137)
T cd08691 45 QECRTSIVENTINPVWHREQFVFVGL-PTDVLEIEVKDKFAKSRPIIR---RFLGKLSIPVQRLLERHAIGDQELSYTLG 120 (137)
T ss_pred ceeeeeeEcCCCCCceEceEEEEEcC-CCCEEEEEEEecCCCCCccCC---ceEEEEEEEHHHhcccccCCceEEEEECC
Confidence 3578999999999999 999999874 678999999986431100 01 12688888776664332122221 244
Q ss_pred CCchhhhhcC
Q psy11343 536 GDTDKARKHG 545 (1150)
Q Consensus 536 g~tD~a~~~G 545 (1150)
++...+.++|
T Consensus 121 k~~~~s~v~G 130 (137)
T cd08691 121 RRTPTDHVSG 130 (137)
T ss_pred cCCCCCcEEE
Confidence 5555666666
No 175
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=36.01 E-value=8.8 Score=39.19 Aligned_cols=66 Identities=8% Similarity=0.032 Sum_probs=44.3
Q ss_pred HHhhccCc-----hhHHHHHhhhccccccccccccccc------------c--c--CccEEEeccCcccchhhhhHHhhh
Q psy11343 453 FNALQLDS-----ADEQTAAIRRELDNLEGGRYFFNAF------------K--E--SESILYACDDENEYHLWVMAMYRA 511 (1150)
Q Consensus 453 ~~~~~~~~-----~~~~~~~i~~el~~l~ggk~FF~~v------------k--e--gD~i~fa~dDE~er~lwVqamyRa 511 (1150)
|+-+.+.. ...+|+.++..+||.|++.|.|+.. . + +..+.|.+||.+...- -.+
T Consensus 22 YV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~--ddf--- 96 (148)
T cd04010 22 YASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGG--DVF--- 96 (148)
T ss_pred eEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCC--Cce---
Confidence 55555544 5678999999999999999999984 1 1 2357788888765210 011
Q ss_pred hcCcccccCCCC
Q psy11343 512 TGQSHKPTPLNS 523 (1150)
Q Consensus 512 tGQs~Kpv~p~~ 523 (1150)
.|+...|+....
T Consensus 97 LG~v~i~l~~l~ 108 (148)
T cd04010 97 LGEVRIPLRGLD 108 (148)
T ss_pred eEEEEEeccccc
Confidence 677777765544
No 176
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=35.39 E-value=9.4 Score=36.32 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=45.7
Q ss_pred HHhhccC---chhHHHHHhhhccccccccccccccccc-CccEEEeccCcccchhhhhHHhhhhcCcccccCCCC
Q psy11343 453 FNALQLD---SADEQTAAIRRELDNLEGGRYFFNAFKE-SESILYACDDENEYHLWVMAMYRATGQSHKPTPLNS 523 (1150)
Q Consensus 453 ~~~~~~~---~~~~~~~~i~~el~~l~ggk~FF~~vke-gD~i~fa~dDE~er~lwVqamyRatGQs~Kpv~p~~ 523 (1150)
|+.+.++ ....||+.++..+||.|++.|-|..-.+ .+.+.|.++|.+.. -.. -.|+..-|+....
T Consensus 24 yv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~---~~~---~iG~~~~~l~~l~ 92 (119)
T cd04036 24 YVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV---MDD---HLGTVLFDVSKLK 92 (119)
T ss_pred EEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC---CCc---ccEEEEEEHHHCC
Confidence 5555554 3457899999999999999999987655 34688999998642 111 2677777765443
No 177
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=35.15 E-value=7.6 Score=39.45 Aligned_cols=48 Identities=13% Similarity=0.193 Sum_probs=41.5
Q ss_pred HHhhccCchhHHHHHhhhcccccccccccccccccCccEEEeccCccc
Q psy11343 453 FNALQLDSADEQTAAIRRELDNLEGGRYFFNAFKESESILYACDDENE 500 (1150)
Q Consensus 453 ~~~~~~~~~~~~~~~i~~el~~l~ggk~FF~~vkegD~i~fa~dDE~e 500 (1150)
|+-+.+++...+|+.++.-+||.|++.|-|........|.|.++|.+.
T Consensus 25 YV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~ 72 (145)
T cd04038 25 YVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDT 72 (145)
T ss_pred EEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCC
Confidence 666667777888999999999999999999988777789999999874
No 178
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=35.04 E-value=7.5 Score=37.70 Aligned_cols=49 Identities=4% Similarity=0.078 Sum_probs=39.2
Q ss_pred HhHHhhccCchh-HHHHHhhhcccccccccccccccccCccEEEeccCccc
Q psy11343 451 LLFNALQLDSAD-EQTAAIRRELDNLEGGRYFFNAFKESESILYACDDENE 500 (1150)
Q Consensus 451 ~~~~~~~~~~~~-~~~~~i~~el~~l~ggk~FF~~vkegD~i~fa~dDE~e 500 (1150)
--|+.+.+++.. .+|+.+.+-++|.|++.|-|.+. ++..+.|.++|.+.
T Consensus 36 dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d~~~ 85 (132)
T cd04014 36 DPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFHDAA 85 (132)
T ss_pred CcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEeCCC
Confidence 347888887643 57788899999999999999975 77888888887653
No 179
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=34.79 E-value=8.5 Score=36.74 Aligned_cols=48 Identities=8% Similarity=0.064 Sum_probs=38.9
Q ss_pred HHhhccCchhHHHHHhhhcccccccccccccccccC-ccEEEeccCccc
Q psy11343 453 FNALQLDSADEQTAAIRRELDNLEGGRYFFNAFKES-ESILYACDDENE 500 (1150)
Q Consensus 453 ~~~~~~~~~~~~~~~i~~el~~l~ggk~FF~~vkeg-D~i~fa~dDE~e 500 (1150)
|+.+.+++...+|+.++..+||.|++.|-|.+.... ..+.|.++|.+.
T Consensus 24 yv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~ 72 (123)
T cd04025 24 FVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDL 72 (123)
T ss_pred eEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCC
Confidence 555666666678999999999999999999987754 468899998764
No 180
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=34.64 E-value=20 Score=34.15 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=30.9
Q ss_pred ccceeeeechhHHHhhhceeEEEEEeeceehhhcccc----ccCCCCccccccccceee
Q psy11343 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFK----EKKSDPSEFMQLDGYTVD 208 (1150)
Q Consensus 154 ~~gy~~~~g~~~~kkwk~r~~~lvqvsqytfa~cs~~----e~ks~p~e~~ql~g~tvd 208 (1150)
+.|.|.-.|.. +++||.|||.| .++ ...+|.=+ ..+-.+.+.+.|+|.+|.
T Consensus 4 keG~L~K~~~~-~~~~k~RyffL--Fnd-~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~ 58 (101)
T cd01219 4 KEGSVLKISST-TEKTEERYLFL--FND-LLLYCVPRKMIGGSKFKVRARIDVSGMQVC 58 (101)
T ss_pred cceEEEEEecC-CCCceeEEEEE--eCC-EEEEEEcccccCCCcEEEEEEEecccEEEE
Confidence 34666655543 48999999999 334 45556522 122334466788887774
No 181
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=34.61 E-value=8.2 Score=39.63 Aligned_cols=58 Identities=5% Similarity=0.140 Sum_probs=40.4
Q ss_pred chhHHHHHhhhcccccccccccccccccC----ccEEEeccCcccchhhhhHHhhhhcCcccccCCC
Q psy11343 460 SADEQTAAIRRELDNLEGGRYFFNAFKES----ESILYACDDENEYHLWVMAMYRATGQSHKPTPLN 522 (1150)
Q Consensus 460 ~~~~~~~~i~~el~~l~ggk~FF~~vkeg----D~i~fa~dDE~er~lwVqamyRatGQs~Kpv~p~ 522 (1150)
....+|+.++..+||.|++.|.|..+... ..+.|.++|.+.- .--.+ .|+...++...
T Consensus 63 ~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~--~~d~~---lG~v~i~l~~~ 124 (162)
T cd04020 63 KSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKL--SSNDF---LGGVRLGLGTG 124 (162)
T ss_pred CcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCC--CCCce---EEEEEEeCCcc
Confidence 35678999999999999999999876543 2688999987641 11111 56666555443
No 182
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=32.92 E-value=31 Score=33.71 Aligned_cols=25 Identities=8% Similarity=0.282 Sum_probs=20.8
Q ss_pred cEEEeccCcccchhhhhHHhhhhcC
Q psy11343 490 SILYACDDENEYHLWVMAMYRATGQ 514 (1150)
Q Consensus 490 ~i~fa~dDE~er~lwVqamyRatGQ 514 (1150)
...|.+++++|++.|++++.+++-+
T Consensus 91 ~~~~~A~s~~e~~~Wi~al~~~~~~ 115 (125)
T cd01252 91 VYRISAANDEEMDEWIKSIKASISP 115 (125)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhc
Confidence 3348999999999999999887643
No 183
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=32.87 E-value=13 Score=36.39 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=42.0
Q ss_pred chhHHHHHhhhccccccccccccccccc-----CccEEEeccCcccchhhhhHHhhhhcCcccccCCCC
Q psy11343 460 SADEQTAAIRRELDNLEGGRYFFNAFKE-----SESILYACDDENEYHLWVMAMYRATGQSHKPTPLNS 523 (1150)
Q Consensus 460 ~~~~~~~~i~~el~~l~ggk~FF~~vke-----gD~i~fa~dDE~er~lwVqamyRatGQs~Kpv~p~~ 523 (1150)
....+|+.++.-+||.|++.|.|.+-.+ ...|.|.++|.+.-. -. +-.|+...|+....
T Consensus 54 ~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~--~d---~~iG~~~i~l~~l~ 117 (133)
T cd04009 54 VPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLG--SN---DFEGEAFLPLNDIP 117 (133)
T ss_pred ccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCC--CC---cEeEEEEEeHHHCC
Confidence 3467999999999999999999997652 457889999876310 00 11577766655444
No 184
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=32.53 E-value=12 Score=31.70 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=42.8
Q ss_pred HhHHhhccCc-hhHHHHHhhhcccccccccccccccc-cCccEEEeccCccc
Q psy11343 451 LLFNALQLDS-ADEQTAAIRRELDNLEGGRYFFNAFK-ESESILYACDDENE 500 (1150)
Q Consensus 451 ~~~~~~~~~~-~~~~~~~i~~el~~l~ggk~FF~~vk-egD~i~fa~dDE~e 500 (1150)
-.|+++.++. ...+|++++..+++.|+..|.|+.-. .+..+.|.+.+.+.
T Consensus 21 ~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~ 72 (102)
T cd00030 21 DPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDR 72 (102)
T ss_pred CcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCC
Confidence 3577777776 66789999999999999999999998 78889999888776
No 185
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=31.33 E-value=11 Score=35.65 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=33.7
Q ss_pred chhHHHHHhhhccccccccccccccccc----CccEEEeccCccc
Q psy11343 460 SADEQTAAIRRELDNLEGGRYFFNAFKE----SESILYACDDENE 500 (1150)
Q Consensus 460 ~~~~~~~~i~~el~~l~ggk~FF~~vke----gD~i~fa~dDE~e 500 (1150)
+...+|+.++.-+||.|++.|.|.+..+ ...+.|.++|.+.
T Consensus 36 ~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 36 KPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 3446899999999999999999987654 3478999999874
No 186
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=30.13 E-value=13 Score=35.38 Aligned_cols=39 Identities=13% Similarity=-0.072 Sum_probs=32.8
Q ss_pred hHHHHHhhhccccccccccccccccc-CccEEEeccCccc
Q psy11343 462 DEQTAAIRRELDNLEGGRYFFNAFKE-SESILYACDDENE 500 (1150)
Q Consensus 462 ~~~~~~i~~el~~l~ggk~FF~~vke-gD~i~fa~dDE~e 500 (1150)
..+|+.++..++|.|++.|-|.+-.+ ...+.|.++|.+.
T Consensus 37 ~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~ 76 (126)
T cd04043 37 IAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSF 76 (126)
T ss_pred eecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCC
Confidence 35888999999999999999998774 4578899998864
No 187
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=29.56 E-value=12 Score=36.22 Aligned_cols=49 Identities=10% Similarity=0.148 Sum_probs=38.7
Q ss_pred hHHhhccCc-hhHHHHHhhhcccccccccccccccccCccEEEeccCccc
Q psy11343 452 LFNALQLDS-ADEQTAAIRRELDNLEGGRYFFNAFKESESILYACDDENE 500 (1150)
Q Consensus 452 ~~~~~~~~~-~~~~~~~i~~el~~l~ggk~FF~~vkegD~i~fa~dDE~e 500 (1150)
-|+.+.++. ...+|+.++..++|.|+..|+|..-...+.+.|.++|.+.
T Consensus 24 PYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~ 73 (120)
T cd04045 24 PYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEK 73 (120)
T ss_pred CEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCC
Confidence 366666654 4578888999999999999999876666788899888764
No 188
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=29.26 E-value=11 Score=36.76 Aligned_cols=49 Identities=10% Similarity=0.179 Sum_probs=37.1
Q ss_pred hHHhhccCc-----hhHHHHHhhhccccccccccccccccc--CccEEEeccCccc
Q psy11343 452 LFNALQLDS-----ADEQTAAIRRELDNLEGGRYFFNAFKE--SESILYACDDENE 500 (1150)
Q Consensus 452 ~~~~~~~~~-----~~~~~~~i~~el~~l~ggk~FF~~vke--gD~i~fa~dDE~e 500 (1150)
-|+-+.|.. .+.+|+.++..+||.|++.|.|....+ ++.+.|.+||.+.
T Consensus 34 pYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 34 SYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred eeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 366666643 344799999999999999999986543 3578899988764
No 189
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=29.07 E-value=24 Score=33.07 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=0.0
Q ss_pred ceee------eechhH-HHhhhceeEEE
Q psy11343 156 GYLF------AYGKST-WRKWKKRYFVL 176 (1150)
Q Consensus 156 gy~~------~~g~~~-~kkwk~r~~~l 176 (1150)
|||. ..|+.. .+.||+||++|
T Consensus 3 g~l~rk~~~~~~g~~~~~~~Wk~r~~vL 30 (104)
T cd01253 3 GSLERKHELESGGKKASNRSWDNVYGVL 30 (104)
T ss_pred ceEeEEEEeecCCcccCCCCcceEEEEE
No 190
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=28.88 E-value=1.3e+03 Score=29.33 Aligned_cols=198 Identities=16% Similarity=0.129 Sum_probs=107.4
Q ss_pred HHHHHHHhhcchhhhhhhhhhh-hHHHHHHHHHHHHHh-----HHHHHHHHhcCCCCCCCCccHHHHHHHHhhccc-ccc
Q psy11343 764 GELCVDLLQQNEEHYAEAFAWY-SDLLVEHAEIFWSLF-----AVDMDQVLAEQPSDTWDSFPLFQILNEYLRADE-NLK 836 (1150)
Q Consensus 764 ieLcVsVIeEDke~Yap~fnqF-PqeL~isAEvfWsLF-----a~DMd~ALEeh~~d~~DsFkVkwLyNeYvr~lp-~lK 836 (1150)
++++..+|+..+++...+.--. |..+...+....... ..=+++||+.-. ..+...+ +-+
T Consensus 412 ~~~a~~il~~~~es~~R~~~l~~~~~~~~~~~~if~~Ll~~l~~~~i~~~lea~~--------------~~~~~~~~~~~ 477 (710)
T PF07393_consen 412 LEVAENILQWNKESLGRCLELSPPSDLPKNCQEIFEILLQSLGEEHIEPALEAAY--------------YKLSSQDIAES 477 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhhhccccccc
Confidence 3678888888888888766555 555533322222222 222355554100 1111122 223
Q ss_pred CCccccchhhhhHHHHHHHHhccchhHHHHHHHhHhcccccccCCCccchHHHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q psy11343 837 NGRFHQHLREYFAPLVVRYVDLMESSIAQSIHKGFEKEKWEIKGNGCATSEDLFWKLDALQSFIRDLHWPDQEFNQHLEQ 916 (1150)
Q Consensus 837 n~vfe~~L~~wFePfV~rWLDenEess~qfL~~AfErDKwep~knGqqTSEDLF~qLnqlqeFIrkLeWPDpef~ahlm~ 916 (1150)
.++| ++. |-+.|- .-+.|.+.+...|+..-. |. ..++.++...+- ...+.+++
T Consensus 478 ~~~~--~l~--fl~~i~-----~~~~i~~l~~~~~~~~l~-pl---~~~~~~~~~~~~--------------~~k~~~~~ 530 (710)
T PF07393_consen 478 KEVP--PLV--FLELIN-----QADTILQLLQIFYKEELL-PL---IQSSPDFLNECI--------------QKKKSFES 530 (710)
T ss_pred CCCC--Ccc--HHHHHH-----HHHHHHHHHHHHHHHHHH-Hh---ccCCcHHHHHHH--------------HHHHHHHH
Confidence 3333 342 444443 245666777766666542 21 112223322222 23477888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccccccc----------cccchhhhhhHHHHhhhhhhhhhccCCccccc
Q psy11343 917 RLKLMACDMIESCIMRTESAFQSWLKKGVSFVSTDYII----------HSEMCAMINIIADAKNQSLKLCAVDGIDVHQY 986 (1150)
Q Consensus 917 RfaktISkmIeqYadrt~~~F~s~l~Ke~~~~stD~il----------P~e~CimmNniqqlRvQleKlc~~~gG~e~qy 986 (1150)
++-.-++..|..+++.+.......+++.+ ++||.- |.++|..+ +..+......+-+...|+
T Consensus 531 ~le~~v~~gL~~~i~~l~~~v~~iL~~Qk---k~Df~p~~~~~~~~~~~T~ac~~v--v~~L~~~~~~~~~~l~~~---- 601 (710)
T PF07393_consen 531 RLEEKVNAGLNKGIDVLMNWVEFILSEQK---KTDFKPKEDDLSLDQQPTPACQEV--VEFLERHCSLLKGSLDGS---- 601 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCCCCCccccccccCCCHHHHHH--HHHHHHHHHHHHHHccch----
Confidence 88888888999999999888888888443 577765 55667653 344444444443333342
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11343 987 HIKIDDLIEKTSANMIQGLISKLVAVLENTLAKLS 1021 (1150)
Q Consensus 987 h~~id~~Le~~~~~mls~L~~KL~~VLe~vL~KLS 1021 (1150)
.+...+++|-.+|-..|-.-+.|..
T Consensus 602 ----------nl~~f~~elg~~l~~~l~~h~kk~~ 626 (710)
T PF07393_consen 602 ----------NLDVFLQELGERLHRLLLKHLKKFT 626 (710)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 2445556666666666666666553
No 191
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=27.47 E-value=39 Score=32.58 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=27.7
Q ss_pred ccccccccccCccEEEeccCcccchhhhhHH
Q psy11343 478 GRYFFNAFKESESILYACDDENEYHLWVMAM 508 (1150)
Q Consensus 478 gk~FF~~vkegD~i~fa~dDE~er~lwVqam 508 (1150)
.++.|..+-.+.+.-+.++++.||.-||++|
T Consensus 73 ~~~~F~i~t~~r~~yl~A~s~~er~~WI~ai 103 (106)
T cd01238 73 FKYPFQVVHDEGTLYVFAPTEELRKRWIKAL 103 (106)
T ss_pred cCccEEEEeCCCeEEEEcCCHHHHHHHHHHH
Confidence 5789999888778888999999999999998
No 192
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=27.10 E-value=9.2e+02 Score=26.97 Aligned_cols=131 Identities=19% Similarity=0.238 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhHHHHHHHHhcCCCCCCCCccHHHHHHHHhhccccccCCccccchhhhhHHHHHHHHhccchh--HHHHH
Q psy11343 790 VEHAEIFWSLFAVDMDQVLAEQPSDTWDSFPLFQILNEYLRADENLKNGRFHQHLREYFAPLVVRYVDLMESS--IAQSI 867 (1150)
Q Consensus 790 ~isAEvfWsLFa~DMd~ALEeh~~d~~DsFkVkwLyNeYvr~lp~lKn~vfe~~L~~wFePfV~rWLDenEes--s~qfL 867 (1150)
.+..+.+...+..-+...+.+...... +..++...+. + .-+..+.++..-.+..|++..+.. +.+.+
T Consensus 100 ~~~~~~i~~~i~~~~~~~l~~~~~~~~----~~~~l~~ll~------~-~~~~~l~~~il~~i~~~l~~~e~~~~I~~~i 168 (367)
T PF04286_consen 100 KIDQEKIAEFIEKNLRKKLSEIILAPL----LQKLLRSLLE------E-EQHQKLLDRILEKIKEYLKSEETRERIRDLI 168 (367)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhccchh----HHHHHHHHHh------c-cchHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 444555555555555555555554432 1122222221 1 123456678888889999998876 88888
Q ss_pred HHhHhcccccccCCCccchHHHHHHHHHH-HHhhhcCC-CCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q psy11343 868 HKGFEKEKWEIKGNGCATSEDLFWKLDAL-QSFIRDLH-WPDQEFNQHLEQRLKLMACDMIE--SCIMRTESAF 937 (1150)
Q Consensus 868 ~~AfErDKwep~knGqqTSEDLF~qLnql-qeFIrkLe-WPDpef~ahlm~RfaktISkmIe--qYadrt~~~F 937 (1150)
...++.-. +.+. .+.+...+-.. .+++.++. -|+......+.+.+...+.++.. .+.+++.+-.
T Consensus 169 ~~~~~~~~----~~~~--~~~l~~~i~~~l~~~l~~l~~~~~~~lr~~~~~~l~~~i~~L~~d~~~~~~i~~~~ 236 (367)
T PF04286_consen 169 EEFLEEYL----GKSF--LDKLAEKIQDELDSLLEKLQEDPDHPLRQEIDQKLRELIERLLTDPELREKIEELK 236 (367)
T ss_pred HHHHHHhc----ccch--hhHHHHHHHHHHHHHHHHHHhCcccHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88877653 1211 44444444333 55666665 78888888888888888888875 4444444433
No 193
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=26.57 E-value=13 Score=37.79 Aligned_cols=46 Identities=11% Similarity=0.176 Sum_probs=40.4
Q ss_pred HHhhccCchhHHHHHhhhcccccccccccccccccCccEEEeccCcc
Q psy11343 453 FNALQLDSADEQTAAIRRELDNLEGGRYFFNAFKESESILYACDDEN 499 (1150)
Q Consensus 453 ~~~~~~~~~~~~~~~i~~el~~l~ggk~FF~~vkegD~i~fa~dDE~ 499 (1150)
|+-+++++-+.+|+.+.. .||.|++.|-|..-+..+.|.|.+||.+
T Consensus 23 YV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd 68 (127)
T cd08394 23 YVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKG 68 (127)
T ss_pred eEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCC
Confidence 888999998889999887 7999999999998766666999999976
No 194
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=26.53 E-value=10 Score=37.21 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=34.8
Q ss_pred HHhhccC---chhHHHHHhhhcccccccccccccccccCc----cEEEeccCccc
Q psy11343 453 FNALQLD---SADEQTAAIRRELDNLEGGRYFFNAFKESE----SILYACDDENE 500 (1150)
Q Consensus 453 ~~~~~~~---~~~~~~~~i~~el~~l~ggk~FF~~vkegD----~i~fa~dDE~e 500 (1150)
|+.+.+. +...+|+.++..+||.|++.|.|..+..++ .+.|.++|.+.
T Consensus 41 yV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~ 95 (128)
T cd08388 41 YVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR 95 (128)
T ss_pred EEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC
Confidence 5555553 223479999999999999999995554332 58888888753
No 195
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=26.17 E-value=13 Score=35.32 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=43.9
Q ss_pred HHhhcc---CchhHHHHHhhhccccccccccccccccc----CccEEEeccCcccchhhhhHHhhhhcCcccccCCCC
Q psy11343 453 FNALQL---DSADEQTAAIRRELDNLEGGRYFFNAFKE----SESILYACDDENEYHLWVMAMYRATGQSHKPTPLNS 523 (1150)
Q Consensus 453 ~~~~~~---~~~~~~~~~i~~el~~l~ggk~FF~~vke----gD~i~fa~dDE~er~lwVqamyRatGQs~Kpv~p~~ 523 (1150)
|+.+.+ ++...+|+.++..+||.|++.|-|..+.. ...+.|.++|.+... --- -.|+...|+....
T Consensus 40 yv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~--~~~---~iG~~~i~l~~l~ 112 (125)
T cd08386 40 FVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFS--RND---PIGEVSLPLNKVD 112 (125)
T ss_pred eEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCc--CCc---EeeEEEEeccccc
Confidence 555555 34456899999999999999999986543 236889998876411 000 1566666665433
No 196
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=26.04 E-value=45 Score=31.48 Aligned_cols=34 Identities=15% Similarity=0.337 Sum_probs=29.3
Q ss_pred ccccccccccCccEEEeccCcccchhhhhHHhhh
Q psy11343 478 GRYFFNAFKESESILYACDDENEYHLWVMAMYRA 511 (1150)
Q Consensus 478 gk~FF~~vkegD~i~fa~dDE~er~lwVqamyRa 511 (1150)
.++.|+.+..+-+..|.+++|.|+..||.+|-++
T Consensus 60 ~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 60 EKGRFEIHSNNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CCCEEEEEcCCcEEEEECCCHHHHHHHHHHHHhh
Confidence 3678998888888899999999999999999543
No 197
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=25.88 E-value=14 Score=36.66 Aligned_cols=55 Identities=11% Similarity=-0.090 Sum_probs=38.1
Q ss_pred HHHHHhhhcccccccccccccccccCc----cEEEeccCcccchhhhhHHhhhhcCcccccCCC
Q psy11343 463 EQTAAIRRELDNLEGGRYFFNAFKESE----SILYACDDENEYHLWVMAMYRATGQSHKPTPLN 522 (1150)
Q Consensus 463 ~~~~~i~~el~~l~ggk~FF~~vkegD----~i~fa~dDE~er~lwVqamyRatGQs~Kpv~p~ 522 (1150)
.+|+.++..+||+|++.|-|....+.+ .+.|.++|.+.- .-- +-.||...|+...
T Consensus 40 ~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~--~~d---d~IG~~~l~l~~~ 98 (120)
T cd08395 40 FATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFA--RDD---RLVGVTVLQLRDI 98 (120)
T ss_pred eeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEeccc--CCC---CEEEEEEEEHHHC
Confidence 478899999999999999999986633 477888886421 000 1157776664433
No 198
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=25.32 E-value=52 Score=27.96 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=29.2
Q ss_pred cccccccccccCc-cEEEeccCcccchhhhhHHhhh
Q psy11343 477 GGRYFFNAFKESE-SILYACDDENEYHLWVMAMYRA 511 (1150)
Q Consensus 477 ggk~FF~~vkegD-~i~fa~dDE~er~lwVqamyRa 511 (1150)
+.++-|....... .+.|.++++.++..|+.++..+
T Consensus 65 ~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~ 100 (102)
T smart00233 65 KKPHCFEIKTADRRSYLLQAESEEEREEWVDALRKA 100 (102)
T ss_pred CCceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHh
Confidence 4577787777766 8999999999999999998654
No 199
>KOG0930|consensus
Probab=24.98 E-value=40 Score=38.90 Aligned_cols=58 Identities=24% Similarity=0.585 Sum_probs=46.4
Q ss_pred CCCcccceeeeechhHHHhhhceeEEEEEeeceehhhccccccCCCCccccccccceeeecc
Q psy11343 150 LNMKHCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVDYIE 211 (1150)
Q Consensus 150 ~n~k~~gy~~~~g~~~~kkwk~r~~~lvqvsqytfa~cs~~e~ks~p~e~~ql~g~tvdy~~ 211 (1150)
.|-..=|+|+-+|-.-=|-||||+|+|--=--|-|-+-+= .+|.-.+-|+...|.=-+
T Consensus 258 fnpdREGWLlKlgg~rvktWKrRWFiLtdNCLYYFe~tTD----KEPrGIIpLeNlsir~Ve 315 (395)
T KOG0930|consen 258 FNPDREGWLLKLGGNRVKTWKRRWFILTDNCLYYFEYTTD----KEPRGIIPLENLSIREVE 315 (395)
T ss_pred cCccccceeeeecCCcccchhheeEEeecceeeeeeeccC----CCCCcceeccccceeecc
Confidence 4556679999999988899999999998888888876553 357788888877776543
No 200
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=24.86 E-value=19 Score=35.80 Aligned_cols=51 Identities=8% Similarity=0.068 Sum_probs=41.2
Q ss_pred hHhHHhhccC----chhHHHHHhhhccccccccccccccccc----------------CccEEEeccCccc
Q psy11343 450 QLLFNALQLD----SADEQTAAIRRELDNLEGGRYFFNAFKE----------------SESILYACDDENE 500 (1150)
Q Consensus 450 ~~~~~~~~~~----~~~~~~~~i~~el~~l~ggk~FF~~vke----------------gD~i~fa~dDE~e 500 (1150)
.--|+.+.++ +...+|+.++..++|.|+..|.|.+... ...|.|.++|.+.
T Consensus 19 ~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~ 89 (137)
T cd08675 19 CDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASM 89 (137)
T ss_pred CCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCc
Confidence 3457777777 6778999999999999999999997764 3477888888775
No 201
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=24.75 E-value=6.6e+02 Score=24.66 Aligned_cols=112 Identities=24% Similarity=0.431 Sum_probs=60.4
Q ss_pred EEEEEEEEEEeeccccccCCCCeEEEEEEeeCCccc----ccccccc--cCCcccccCcccccccc--------c-eeEE
Q psy11343 26 LNFQLEVIVMEVKGLKSLAPNRIVYCTMEVEGGEKL----QTDQAEA--SKPMWDTQADFSTNQPL--------P-AIKV 90 (1150)
Q Consensus 26 l~f~lev~v~ev~~l~~~~~~~~vyctme~eg~~kl----~td~~ea--~~p~w~tq~df~t~~pl--------p-~~kv 90 (1150)
..|++.|.|+++.|+.. .+ ..|.+-..+|++- .|..+.. +.-.|+..=.|.++=.. | .+++
T Consensus 5 ~kf~~~l~i~~l~~~p~--~~--~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS--SN--GKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCC--CC--CEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 46888899999999988 33 3444555677664 3333332 44567744333332111 0 1334
Q ss_pred EEeecc-CCcccccccccceEEeecCCCCCC--CccccccccCCCCCCcCceEEEEEEe
Q psy11343 91 KLFTEN-PGMLALEDKELGKVILRPTPLSSK--APEWHKMLVPKNCADQDLKIKIACRM 146 (1150)
Q Consensus 91 kl~~e~-~g~l~~edkelg~v~~~p~~~~~~--~~~~~~m~~~k~~~d~~l~i~~~~~m 146 (1150)
.|+.+. .|-- +.||++.|.=+-..+. .|.=.+ ...+.|++..-.+.|.+.|
T Consensus 81 ~v~~~~~~~~k----~~lG~~~inLaey~~~~~~~~~~~-~~l~~~~~~~a~L~isi~~ 134 (143)
T PF10358_consen 81 SVFEVDGSGKK----KVLGKVSINLAEYANEDEEPITVR-LLLKKCKKSNATLSISISL 134 (143)
T ss_pred EEEEecCCCcc----ceEEEEEEEHHHhhCcCCCcEEEE-EeCccCCCCCcEEEEEEEE
Confidence 444442 1111 4789998875544443 233333 4556676666555555555
No 202
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=23.76 E-value=1.4e+03 Score=27.90 Aligned_cols=156 Identities=10% Similarity=0.062 Sum_probs=78.9
Q ss_pred HHHHHHHHhhcchhhhhhhhhhhhHHH----HHHHHHHHHHhHHHHHHHHhcCCCCC---CCCccH--HHHHHHHhhccc
Q psy11343 763 LGELCVDLLQQNEEHYAEAFAWYSDLL----VEHAEIFWSLFAVDMDQVLAEQPSDT---WDSFPL--FQILNEYLRADE 833 (1150)
Q Consensus 763 LieLcVsVIeEDke~Yap~fnqFPqeL----~isAEvfWsLFa~DMd~ALEeh~~d~---~DsFkV--kwLyNeYvr~lp 833 (1150)
+++|...+.+.+-+........|-+.. .+..+..-.-|...|....-.-|+.+ ++.|.- ..++...+.-+.
T Consensus 150 ~a~L~~~L~~~~~~~e~~~~~~w~~~~~~Wr~l~~~~~i~~f~~~~~s~~~~~P~~~~~~~e~~~~~Q~~l~~~r~~~L~ 229 (473)
T PF14643_consen 150 YADLFANLMEAELQRELSYRRRWQDRVDDWRALRHERAIQEFREFMASEEFQNPPERKQLLEQMRKEQVDLHEKRLELLQ 229 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333333334454444 77888888889999988666666655 244443 336666666666
Q ss_pred cccCCccccchhhhhHHHHHHHHhccchhH---HHHHHHhHhcccccccCCCccchHHHHHHHHHHHHhhhcCC-CCCHH
Q psy11343 834 NLKNGRFHQHLREYFAPLVVRYVDLMESSI---AQSIHKGFEKEKWEIKGNGCATSEDLFWKLDALQSFIRDLH-WPDQE 909 (1150)
Q Consensus 834 ~lKn~vfe~~L~~wFePfV~rWLDenEess---~qfL~~AfErDKwep~knGqqTSEDLF~qLnqlqeFIrkLe-WPDpe 909 (1150)
.+++-.|. ......|.+|.......- ..+...++++=. ..--.........+.++..=+.+.. |+.++
T Consensus 230 ~l~~l~Pp----~~t~~~v~eW~~~l~~l~~~~d~~~~~~~~~lr----~~~E~~~~ec~~~ve~~k~~L~~~~~~~~ee 301 (473)
T PF14643_consen 230 SLCDLLPP----NLTKEKVEEWYASLNALNEQIDEYHQQCMEKLR----ALYEKICQECLALVEKLKQELLDWKACTEEE 301 (473)
T ss_pred HhhcCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 66666652 344455888876655321 111112211111 0001112233334444444444444 66666
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11343 910 FNQHLEQRLKLMACDMI 926 (1150)
Q Consensus 910 f~ahlm~RfaktISkmI 926 (1150)
.......+|--++....
T Consensus 302 a~~lv~~~~~plv~~~q 318 (473)
T PF14643_consen 302 AEELVNPEFLPLVGELQ 318 (473)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666654444433
No 203
>KOG1011|consensus
Probab=22.64 E-value=3.9e+02 Score=34.39 Aligned_cols=112 Identities=16% Similarity=0.191 Sum_probs=68.7
Q ss_pred CCccccchhhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhhhhccccccCCcchhhhhhHHHHHh
Q psy11343 980 GIDVHQYHIKIDDLIEKT----SANMIQGLISKLVAVLENTLAKLSRYDEGSLIGSILSLTNVSGNGKELGQAYVNFSRN 1055 (1150)
Q Consensus 980 gG~e~qyh~~id~~Le~~----~~~mls~L~~KL~~VLe~vL~KLSRyDEgsl~sSiLSlt~v~kPg~dl~~~Yv~FvR~ 1055 (1150)
+.+.+|..-.++...|.+ +..-+..+...|..-||.||+.||+-...++-.-|-.-+ .+-||.+++- |.
T Consensus 851 mnnvqqlrvqlekmfeamggkeld~ea~d~lk~lqvkln~vldels~~f~tsfqphi~e~v--~qmg~il~qv-----kg 923 (1283)
T KOG1011|consen 851 MNNVQQLRVQLEKMFEAMGGKELDEEAGDVLKELQVKLNSVLDELSAVFVTSFQPHIHECV--IQMGDILVQV-----KG 923 (1283)
T ss_pred eccHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHH--HHHHHHHhhh-----cc
Confidence 455677766666555544 445567888899999999999999876666554444332 1112211110 00
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhhHHHHHHhhc
Q psy11343 1056 NMDQIRSKINDELWILNFFELWYTAQMKVLCNWLSERVDNSLHVYQCNCLSHCVKKMY 1113 (1150)
Q Consensus 1056 n~d~Lr~kV~dELw~l~~fe~wy~~~~~~i~~WLteR~d~~Lh~yQl~~L~~ivKk~y 1113 (1150)
-. +-..=.....+.+.+.|+|-||-.|..|.-.|..+++|.+.
T Consensus 924 t~---------------~a~~sva~dad~vl~plmdlldgnlt~fa~~cektvlk~vl 966 (1283)
T KOG1011|consen 924 TG---------------LAKTSVAQDADAVLEPLMDLLDGNLTLFADQCEKTVLKRVL 966 (1283)
T ss_pred cc---------------cchhhcccchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 00 00111233456778899999999999998888666655543
No 204
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=21.91 E-value=20 Score=34.32 Aligned_cols=49 Identities=6% Similarity=0.127 Sum_probs=38.0
Q ss_pred hHHhhccCchhHHHHHhhh-ccccccccccccccccc----CccEEEeccCccc
Q psy11343 452 LFNALQLDSADEQTAAIRR-ELDNLEGGRYFFNAFKE----SESILYACDDENE 500 (1150)
Q Consensus 452 ~~~~~~~~~~~~~~~~i~~-el~~l~ggk~FF~~vke----gD~i~fa~dDE~e 500 (1150)
-|+.+.+++...++..++. .++|.|+..|-|.+... -+.+.|.++|.+.
T Consensus 24 pyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 24 PYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred ceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 3677777776677877774 89999999999997766 2478888888764
No 205
>KOG3046|consensus
Probab=21.40 E-value=2.6e+02 Score=29.71 Aligned_cols=69 Identities=19% Similarity=0.336 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHHhhhccccc------cccCCCCchhh---hhhHHHHHHHh-hhcc--cCCCCChHHH----------
Q psy11343 659 NRFNVIKERLKELLINQITNFR------YAFPFGRPEGI---LKSTLSLLERV-LMKD--SVTPVQPEEV---------- 716 (1150)
Q Consensus 659 ErFvkLldqLhn~LriqLS~YR------~~FPfsrPE~a---LKsTVdLLtsV-rMKv--~~~p~ppevV---------- 716 (1150)
++-.+-+.+|.++|+.=+.+|| ++||-.++..+ |-+.|-.|.++ +|+. .-...|-+|+
T Consensus 8 ~q~~ekl~~l~~~le~~~e~~~~Lgl~vs~F~~tsq~~L~qrl~tLv~~L~~l~~~s~k~n~i~IPleVl~yIddGrNPd 87 (147)
T KOG3046|consen 8 DQMQEKLAQLENSLEKFLENFRQLGLIVSNFQPTSQDALNQRLNTLVRGLQDLDKLSSKLNDIQIPLEVLEYIDDGRNPD 87 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcHHHHHHHHHHHHHHhhhhHHHHHhhccccCcHHHHHHHhcCCCcc
Confidence 3344455566677777666776 68988888665 44444445444 3332 2235554442
Q ss_pred ---HHHHHHHHHHH
Q psy11343 717 ---REVIKKCLETA 727 (1150)
Q Consensus 717 ---recVKaCLesA 727 (1150)
|+|+.+|+++-
T Consensus 88 ~ytke~le~~~~kN 101 (147)
T KOG3046|consen 88 LYTKEFLEKCLAKN 101 (147)
T ss_pred HHHHHHHHHHHHhh
Confidence 66666666543
No 206
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=21.32 E-value=27 Score=33.37 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=39.3
Q ss_pred HhHHhhccCc-hhHHHHHhhh-ccccccccccccccccc-----CccEEEeccCccc
Q psy11343 451 LLFNALQLDS-ADEQTAAIRR-ELDNLEGGRYFFNAFKE-----SESILYACDDENE 500 (1150)
Q Consensus 451 ~~~~~~~~~~-~~~~~~~i~~-el~~l~ggk~FF~~vke-----gD~i~fa~dDE~e 500 (1150)
--|+.+.+++ ...+|+.++. -+|+.|++.|.|.+... ...|.|.+.|.+.
T Consensus 22 dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 22 KVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred ceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 3477788877 6778887754 69999999999998776 4688888888654
No 207
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=21.08 E-value=52 Score=32.15 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=19.7
Q ss_pred cEEEeccCcccchhhhhHHhhh
Q psy11343 490 SILYACDDENEYHLWVMAMYRA 511 (1150)
Q Consensus 490 ~i~fa~dDE~er~lwVqamyRa 511 (1150)
+..++|++++|+.-|++||+||
T Consensus 91 t~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 91 TFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp EEEEEESSHHHHHHHHHHHHH-
T ss_pred EEEEEECCHHHHHHHHHHHHhC
Confidence 6779999999999999999886
No 208
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=20.81 E-value=24 Score=33.30 Aligned_cols=56 Identities=7% Similarity=0.064 Sum_probs=39.1
Q ss_pred hHHHHHhhhccccccccccccccccc---CccEEEeccCcccchhhhhHHhhhhcCcccccCCC
Q psy11343 462 DEQTAAIRRELDNLEGGRYFFNAFKE---SESILYACDDENEYHLWVMAMYRATGQSHKPTPLN 522 (1150)
Q Consensus 462 ~~~~~~i~~el~~l~ggk~FF~~vke---gD~i~fa~dDE~er~lwVqamyRatGQs~Kpv~p~ 522 (1150)
..+|+.++.-++|.|++.|-|....+ +..+.|.++|.+.- .... -.|+...|+...
T Consensus 53 ~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~--~~~~---~iG~~~i~l~~l 111 (123)
T cd08521 53 KRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRF--GRNT---FLGEVEIPLDSW 111 (123)
T ss_pred eeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCC--cCCc---eeeEEEEecccc
Confidence 46899999999999999999985543 55888999987641 0001 156666665544
No 209
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=20.77 E-value=22 Score=34.31 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=37.6
Q ss_pred HHhhccC-chhHHHHHhhhcccccccccccccccccCccEEEeccCccc
Q psy11343 453 FNALQLD-SADEQTAAIRRELDNLEGGRYFFNAFKESESILYACDDENE 500 (1150)
Q Consensus 453 ~~~~~~~-~~~~~~~~i~~el~~l~ggk~FF~~vkegD~i~fa~dDE~e 500 (1150)
|+.+.++ ....+|+.++.-+||.|++.|.|.+.. .+.+.|.++|.+.
T Consensus 24 yv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~ 71 (123)
T cd08382 24 FAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKK 71 (123)
T ss_pred EEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCC
Confidence 5555564 555688889999999999999999854 7789999998764
No 210
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=20.37 E-value=37 Score=33.14 Aligned_cols=50 Identities=20% Similarity=0.376 Sum_probs=38.3
Q ss_pred hhHHHHHhhhcccccccccccccccccCc-cEEEeccCcccchhhhhHHhh
Q psy11343 461 ADEQTAAIRRELDNLEGGRYFFNAFKESE-SILYACDDENEYHLWVMAMYR 510 (1150)
Q Consensus 461 ~~~~~~~i~~el~~l~ggk~FF~~vkegD-~i~fa~dDE~er~lwVqamyR 510 (1150)
.+-..+.|+..-|.+.|..|+|+.+..+. ++-+.|.++.|++-|+.+|-|
T Consensus 47 i~l~~~~V~~v~ds~~~r~~cFel~~~~~~~~y~~~a~~~er~~Wi~~l~~ 97 (98)
T cd01245 47 IDLSDAYLYPVHDSLFGRPNCFQIVERALPTVYYSCRSSEERDKWIESLQA 97 (98)
T ss_pred eeccccEEEEccccccCCCeEEEEecCCCCeEEEEeCCHHHHHHHHHHHhc
Confidence 33344456666667778889999999987 777777777999999998843
Done!