RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11343
(1150 letters)
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 96.5 bits (240), Expect = 1e-23
Identities = 44/66 (66%), Positives = 55/66 (83%)
Query: 151 NMKHCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVDYI 210
MKH GYL+A GK+ W++WKKR+FVLVQVSQYTFAMCS++EKK++P E +QLDGYTVDY
Sbjct: 7 GMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYT 66
Query: 211 EPASEK 216
+P
Sbjct: 67 DPQPGL 72
Score = 65.3 bits (159), Expect = 1e-12
Identities = 31/56 (55%), Positives = 38/56 (67%)
Query: 470 RELDNLEGGRYFFNAFKESESILYACDDENEYHLWVMAMYRATGQSHKPTPLNSNA 525
LEGGR FFNA KE +++++A DDE + LWV AMYRATGQSHKP P +
Sbjct: 67 DPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQSHKPVPPTQSG 122
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter
release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Length = 341
Score = 96.6 bits (239), Expect = 2e-21
Identities = 45/323 (13%), Positives = 99/323 (30%), Gaps = 38/323 (11%)
Query: 846 EYFAPLVVRYVDLMESSIAQSIHKGFEKEKWEI-----KGNGCATS-EDLFWKLDALQSF 899
+F P V++++D E +H E++K + + + S D+F +L+
Sbjct: 9 AWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEI 68
Query: 900 IRDLHWPDQEFNQHLEQRLKLMACDMIESCIMRTESAFQSWLKKGVSFVSTDYIIHSEMC 959
I+ L PD + H +R +++ F S+ K C
Sbjct: 69 IKKLECPDPQIVGHYMRRFAKTISNVLLQYADIVSKDFASYCSKEKE---------KVPC 119
Query: 960 AMINIIADAKNQSLKLCAVDGIDVHQYHI-----KIDDLIEKTSANMIQGLISKLVAVLE 1014
++N + Q K+ G ++ + + + +E
Sbjct: 120 ILMNNTQQLRVQLEKMFEAMGGKELDAEASGTLKELQVKLNNVLDELSHVFATSFQPHIE 179
Query: 1015 NTLAKLSRYDEGSLIGSILSLTNVSGNGKE-----------LGQAYVNFSRNNMDQIRSK 1063
+ ++ + + S ++ L F++ + +
Sbjct: 180 ECVRQMGDILSQVKGTGNVPASACSSVAQDADNVLQPIMDLLDSNLTLFAKICEKTVLKR 239
Query: 1064 INDELW--ILNFFELWYTA--QMKVLCNWLSERVDNSLHVYQCNCLSHCVKKMYSDFELQ 1119
+ ELW ++N E + L + + SL QC + + + F
Sbjct: 240 VLKELWKLVMNTMERTIVLPPEFSKLKDHMVREEAKSLTPKQCAVVELALDTIKQYFHAG 299
Query: 1120 GV---MEDKLNSKTYQTVSQRMQ 1139
GV S Q++ +
Sbjct: 300 GVGLKKTFLEKSPDLQSLRYALS 322
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 90.3 bits (223), Expect = 3e-18
Identities = 94/664 (14%), Positives = 196/664 (29%), Gaps = 199/664 (29%)
Query: 404 ILKVGEEDLKRPNRALQQALNCELILSKEQLYDMFQQILVIKKFEHQLLFNALQLDSADE 463
IL V E+ +C+ + DM + IL ++ +H + A
Sbjct: 21 ILSVFEDAFVDN-------FDCKDVQ------DMPKSILSKEEIDH-----IIMSKDAVS 62
Query: 464 QTAAIRRELDNLEGGRYFFNAFKESESILYACDD--ENEYHLWVMAMYRATGQSHKPTPL 521
T R L K+ E + ++ Y ++M+ + + +P+ +
Sbjct: 63 GT---LRLFWTLLS--------KQEEMVQKFVEEVLRINYK-FLMSPIKT--EQRQPSMM 108
Query: 522 NSNAVKNSTISKLQGDTDKARKHGMEEFISADPSKMEHSSLFKSLQSLTLEYRLNDPYCS 581
+ +L D K+ + + L ++L L
Sbjct: 109 TRMYI--EQRDRLYNDNQVFAKYNV-------SRLQPYLKLRQALLEL------------ 147
Query: 582 MGWYSPGQLFVLDEYTARYGVRGCYRHLILLDDLLDRSEKNTMIDP----TLIHC----- 632
P + ++ GV G + + LD L + M L +C
Sbjct: 148 ----RPAKNVLI------DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 633 ------SFAFCSSHVLGNRPEGVVGTVTQEEKNRFNVIKERLKELLINQITNFRY----- 681
+ +R + + K R + I+ L+ LL ++ Y
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDH-----SSNIKLRIHSIQAELRRLLKSK----PYENCLL 248
Query: 682 ------------AFPFG-------RPEGILKSTLSLLE-RVLMKDSVTPVQPEEVREVIK 721
AF R + + + + + + P+EV+ ++
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 722 KCLETAALINYSKLSSEARVEEDLTAEGGVSP------------------------SKKL 757
K L+ L E +P KL
Sbjct: 309 KYLD----CRPQDLPREVL---------TTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 758 EDLIHLGELCVDLLQQNE--EHYAEAFAWYSDLLVEHA-------EIFWS-LFAVDMDQV 807
+I E +++L+ E + + + + + A + W + D+ V
Sbjct: 356 TTII---ESSLNVLEPAEYRKMF-DRLS----VFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 808 LAE--QPS--DTWDSFPLFQILNEYLRADENLKN-GRFHQHLRE-YFAPLVVRYVDLMES 861
+ + + S + I + YL L+N H+ + + Y P DL+
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 862 S----IAQSI--H-KGFEK-EKWEIKGNGCATSEDLFWKLDALQSFIR--DLHWPDQEFN 911
I H K E E+ + +F L+ IR W
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTL-------FRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 912 QHLEQRLKLMACDMIESCIMRTESAFQSWLKKGVSFVST--DYIIHSEMCAMINIIADAK 969
+ Q+LK + I + ++ + + F+ + +I S+ ++ I A+
Sbjct: 521 LNTLQQLKFY-----KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575
Query: 970 NQSL 973
++++
Sbjct: 576 DEAI 579
Score = 77.6 bits (190), Expect = 2e-14
Identities = 98/618 (15%), Positives = 195/618 (31%), Gaps = 153/618 (24%)
Query: 158 LFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVDYIEPASEKV 217
L + + +++ V Y F M K ++ PS T YIE
Sbjct: 71 LLSKQEEMV----QKFVEEVLRINYKFLMSPIKTEQRQPS------MMTRMYIEQRDRLY 120
Query: 218 SPRDSISQAHIRNASPITRQNSHTDNLD--------------KEVMDPQDSQEKQEEERK 263
+ ++ ++ P + L K + + +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV---ALDVCLSYKVQ 177
Query: 264 RRIQLYVF---VSRCIAYPFNSKQSTDMIRRHSKITRHLLEVIQSRFQVPMLHTSIVFL- 319
++ +F + C S + + ++ + LL I + H+S + L
Sbjct: 178 CKMDFKIFWLNLKNC--------NSPETV---LEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 320 ---LQAFLRGDTQIMTDEAFQNA------VQSYT--DVFLKSDRVLNFVQSGACSLYDFR 368
+QA LR +++ + ++N VQ+ + F S ++L + + + DF
Sbjct: 227 IHSIQAELR---RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFL 281
Query: 369 EVFRKNIQKRVRSLPEIDGLSK---ETVLSSWMAKFDCILKVGEEDLKRPNRALQQA-LN 424
+ L+ +++L + L +DL P L
Sbjct: 282 SA---ATTTHISLDHHSMTLTPDEVKSLLLKY-------LDCRPQDL--PREVLTTNPRR 329
Query: 425 CELILSKEQLYDMFQQILVIKKFEHQLLFNALQLDSADEQTAAIRRELDNLEGG---RYF 481
+I E + D ++H D+ T I L+ LE + F
Sbjct: 330 LSII--AESIRDGLAT---WDNWKHVNC---------DKLTTIIESSLNVLEPAEYRKMF 375
Query: 482 --FNAFKESE-------SILYACDDENEYHLWVMAMYRATGQSHKPTPLNSNAVKNSTIS 532
+ F S S+++ +++ VM + + HK + + K STIS
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSD----VMVV---VNKLHKYSLVEKQP-KESTIS 427
Query: 533 KLQGDTDKARKHGMEEFISADPSKMEHSSLFKSLQSLTLEYRLNDPYCSMGWYSPGQLFV 592
+ + + E H S+ Y + + S P
Sbjct: 428 -IPSIYLELKVKLENE-------YALHRSIVDH-------YNIPKTFDSDDLIPP----Y 468
Query: 593 LDEYTARY-GVRGCYRHLILLDDLLDRSEKNTMIDPTLIHCSFAF-----CSSHVLGNRP 646
LD+Y + G + HL ++ E+ T+ ++ F F N
Sbjct: 469 LDQYFYSHIG----H-HL----KNIEHPERMTLF--RMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 647 EGVVGTVTQEEK-NRFNVIKERLKELLINQITNFRYAFPFGRPEGILKST--LSLLERVL 703
++ T+ Q + + + E L+N I +F + E L + LL L
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDF-----LPKIEENLICSKYTDLLRIAL 572
Query: 704 MKDSVTPVQPEEVREVIK 721
M + + E ++V +
Sbjct: 573 MAED-EAIFEEAHKQVQR 589
Score = 77.2 bits (189), Expect = 2e-14
Identities = 92/594 (15%), Positives = 180/594 (30%), Gaps = 138/594 (23%)
Query: 546 MEEFISADPSKMEHSSLFKSLQSLTLEYRLNDPYCSMGWYSPGQLFVLDEYTARYGVRGC 605
+++ + SK E + S +++ RL S Q FV + Y
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ-EEMVQKFVEEVLRINYK---- 92
Query: 606 YRHLILLDDLLDRSEKNTMIDPTLIHCSFAFCSSHVLGNRPEGVVGTVTQEEKNRFNVIK 665
L+ + ++E+ P+++ + + + V++ + + ++
Sbjct: 93 ----FLMSPI--KTEQR---QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP--YLKLR 141
Query: 666 ERLKELLINQITNFRYAFPFGRPEGILKSTLSLLERVLMKDSVTPVQPEEVREV-IKKCL 724
+ L EL + G G K+ ++L V + V ++ + +K C
Sbjct: 142 QALLELRPAK-----NVLIDGVL-GSGKTWVALD--VCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 725 ETAALI-NYSKLSSEARVEEDLTAEGGVSPS---------KKLEDLIHLGELCVDLLQ-- 772
++ KL +++ + T+ S + +L L+ LL
Sbjct: 194 SPETVLEMLQKLLY--QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 773 --QNEEHYAEAFAWYSDLLV--EHAEIFWSLFAVDMDQVLAEQPSDTWDSFPLFQILNEY 828
QN + AF +L+ ++ L A + + S T + +L +Y
Sbjct: 252 NVQNAKA-WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 829 LRADENLKNGRFHQHLRE---YFAPLVVRYVDLMESSIAQSIHKGFEK-EKWEIKGNGCA 884
L Q L P + S IA+SI G + W+
Sbjct: 311 LDCRP--------QDLPREVLTTNPRRL-------SIIAESIRDGLATWDNWK------- 348
Query: 885 TSEDLFWKLD-ALQSFIRDLHWPDQE--------FNQHL---EQRLKLMACDMIESCIM- 931
KL ++S + L + F L L+ D+I+S +M
Sbjct: 349 --HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 932 -----RTESAFQSWLKKGVSFVSTDYIIHS----------EMCAMINIIADAKNQSLKLC 976
S + K+ I S A+ I D N
Sbjct: 407 VVNKLHKYSLVEKQPKEST------ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 977 AVDGIDVHQ---------YHIKIDDLIEKTSA--------NMIQ------GLISKLVAVL 1013
+ D I + +H+K + E+ + ++ +
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 1014 ENTLAKLSRYDEGSLIGSILSLTNVSGNGKELGQAYVNFSRN-NMDQIRSKIND 1066
NTL +L Y + + + L A ++F + I SK D
Sbjct: 521 LNTLQQLKFYKP--------YICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Score = 61.8 bits (149), Expect = 1e-09
Identities = 75/480 (15%), Positives = 140/480 (29%), Gaps = 127/480 (26%)
Query: 32 VIVMEV---KGLKSLAPNRIVY-----CTMEVEGGEKLQTDQAEASKPMWDTQADFSTNQ 83
+ ++V ++ +I + C E LQ + P W +++D S+N
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID-PNWTSRSDHSSNI 223
Query: 84 PLPAIKVK-----LFTENPGMLAL------EDKELGKV------ILRPT-------PLSS 119
L ++ L P L ++ + IL T LS+
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 120 KAP------EWHKMLVPK----------NCADQDLKIKIACRMEKPLNMKHCGYLFAYGK 163
L P +C QDL + P + G
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-VLTTN-PRRLSIIAESIRDGL 341
Query: 164 STWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVDYIEPASEKVSPR--- 220
+TW WK V + T + S +P+E+ ++ + + P S +
Sbjct: 342 ATWDNWKH-----VNCDKLTTIIESSLNVL-EPAEYRKM--FDRLSVFPPSAHIPTILLS 393
Query: 221 ----DSISQ------AHIRNASPITRQNSHTDNLDKEVMDPQ-DSQEKQEEER---KRRI 266
D I + S + +Q + + + K E E + +
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQP---KESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 267 QLYVFVSRCIAYPFN--SKQSTDM-IRRHSKITRHLLEVIQSRFQVPMLHTSIVFLLQAF 323
Y + + D H I HL + ++ + +VFL F
Sbjct: 451 DHYNIPK---TFDSDDLIPPYLDQYFYSH--IGHHLKNIEHPE-RMTLF--RMVFLDFRF 502
Query: 324 LRGDTQIMTDEAFQNAVQSYTDVFLKSDRVLNFVQSGACSLYDFREVFRKNIQKRVRSLP 383
L +I D NA S + L + ++ I + P
Sbjct: 503 LEQ--KIRHDSTAWNASGSILNT-----------------LQQLK-FYKPYICD---NDP 539
Query: 384 EIDGLSKETVLSSWMAKFDCILKVGEEDLKRPN-RALQQALNCELILSKEQLYDM-FQQI 441
+ + L + F + K+ E + L+ AL E E +++ +Q+
Sbjct: 540 KYERLVNA------ILDF--LPKIEENLICSKYTDLLRIALMAE----DEAIFEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 75.5 bits (185), Expect = 9e-14
Identities = 107/593 (18%), Positives = 189/593 (31%), Gaps = 188/593 (31%)
Query: 565 SLQSLTL-----EYRLNDPYCSMGWYSPGQL--------------FVLD-------EYTA 598
S + LTL E+ L P S ++ QL F D E
Sbjct: 5 STRPLTLSHGSLEHVLLVPTAS--FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 599 RYGVRGCYRHLILLDDLLDRSEKNTMIDPTLIHCSFAFCSSHVLGNRPEGVVGTVTQEEK 658
++ L + L++ S+ D L C F + ++ GN + + QE
Sbjct: 63 KF--------LGYVSSLVEPSKVGQF-DQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 659 NRFNVIKERLKELLINQITNFRYAFPF-GRPEGILKSTLSLLERVLMKDSVTPV-----Q 712
KE +K N+ A RP K + S L R + + + V Q
Sbjct: 114 TTLVKTKELIK--------NYITARIMAKRP--FDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 713 --PE----EVREV-------IKKCLETAA--LINYSKLSSEARV---------------- 741
+ E+R++ + ++ +A L + + +A
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 742 ---EEDLTAEGGVS-PSKKLEDLIHLGELC--VDLLQQNEEHYAEAFAWYSDLLVEHAEI 795
++D +S P LI + +L V + E ++ +
Sbjct: 224 NTPDKDYLLSIPISCP------LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 796 FWSLFAVDMDQVLAEQPSDTWDSFPLFQILNEYLRADENLKNGRFHQHLR--EYFAPLVV 853
+ AV +AE +D+W+SF F + + + L F +R E + P
Sbjct: 278 ---VTAV----AIAE--TDSWESF--FVSVRKAITV---L----FFIGVRCYEAY-P--- 315
Query: 854 RYVDLMESSIAQSIHKGFEKEKWEIKGNGCATS----EDLFWKLDALQSFIRDL--HWPD 907
+S+ SI + + G + +L + +Q ++ H P
Sbjct: 316 ------NTSLPPSILEDSLEN-----NEGVPSPMLSISNL--TQEQVQDYVNKTNSHLPA 362
Query: 908 QE------FN--------------QHLEQRL-KLMACDMIESCIMRTESAFQSWLKKGVS 946
+ N L L K A ++ R + + LK
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS--RIPFS-ERKLKFSNR 419
Query: 947 F--VSTDYIIHSEM--CAMINIIADAKNQSLKLCAVD-GIDVHQYHIKID--DLIEKTSA 999
F V++ + HS + A I D ++ A D I V Y D DL S
Sbjct: 420 FLPVASPF--HSHLLVPASDLINKDLVKNNVSFNAKDIQIPV--YDTF-DGSDL-RVLSG 473
Query: 1000 NMIQGLISKLVAVL----ENTLAKLSRY--DEG----SLIGSILSLTNVSGNG 1042
++ + ++ + L E T + + D G S +G L+ N G G
Sbjct: 474 SISERIV-DCIIRLPVKWETTTQFKATHILDFGPGGASGLGV-LTHRNKDGTG 524
Score = 65.8 bits (160), Expect = 7e-11
Identities = 108/647 (16%), Positives = 180/647 (27%), Gaps = 258/647 (39%)
Query: 142 IACRMEKPLNMKHCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAM---CSFKEKKSDPSE 198
+ R PL + H G L + +LV + + A F + +P+E
Sbjct: 4 YSTR---PLTLSH-GSL-------------EHVLLVPTASFFIASQLQEQFNKILPEPTE 46
Query: 199 FMQLD--------------GYTVDYIEPASEKVSPRDSISQAHIRNA-SPITRQNS-HT- 241
D GY +EP KV D + + + N H
Sbjct: 47 GFAADDEPTTPAELVGKFLGYVSSLVEP--SKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 242 -DNLDKEVMDPQDSQEKQEEERKRRIQLYVFVSRCIAYPFNSKQSTDMIRRHSKITRHLL 300
L +E + + K I+ Y+ PF+ K
Sbjct: 105 AAKLLQE-------NDTTLVKTKELIKNYITARIMAKRPFDKK----------------- 140
Query: 301 EVIQSRFQVPMLHTSIVFLLQAFLRGDTQIMTDEAF--QNAVQSYTDVF--LKS------ 350
S L +A G+ Q++ F Q Y F L+
Sbjct: 141 ------------SNSA--LFRAVGEGNAQLVA--IFGGQGNTDDY---FEELRDLYQTYH 181
Query: 351 DRVLNFVQSGACSLY-------DFREVFRKNIQ-----KRVRSLPEIDGLSKETVLSSWM 398
V + ++ A +L D +VF + + + + P+ D L + S
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI--SC- 238
Query: 399 AKFDCILKVGEEDLKRPNRALQQALN----CELI-LSKEQLYDMFQQILVIKKFEHQLLF 453
P + Q + +L+ + +L + Q L
Sbjct: 239 ----------------PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS----QGLV 278
Query: 454 NALQL---DSADEQTAAIRRELDNLEGGRYFF------NAFKE---SESILYACDDENEY 501
A+ + DS + ++R+ + L FF A+ SIL + NE
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVL-----FFIGVRCYEAYPNTSLPPSILEDSLENNE- 332
Query: 502 HLWVMAMYRATGQSHKPTP-LNSNAVKNSTISKLQGDTDKARKHGMEEFISADPSKMEHS 560
G P+P L ++ N T ++Q +K H K
Sbjct: 333 -----------GV---PSPML---SISNLTQEQVQDYVNKTNSHL-------PAGKQVEI 368
Query: 561 SLF------------KSLQSLTLEYRLNDPYCSMGWYSPGQLFVLD----EYTARYGVRG 604
SL +SL L L R G LD ++ R ++
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLR--KAKAPSG---------LDQSRIPFSER-KLKF 416
Query: 605 CYR--------H---------LILLD-----------DL----------LDRSEKNTMID 626
R H LI D D+ D + I
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 627 PTLIHCSF----------AFCSSHVL--GNRPEGV--VGTVTQEEKN 659
++ C F ++H+L G P G +G +T K+
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATHILDFG--PGGASGLGVLTHRNKD 521
Score = 63.9 bits (155), Expect = 3e-10
Identities = 100/640 (15%), Positives = 183/640 (28%), Gaps = 243/640 (37%)
Query: 414 RPNRALQQALNCELILSK------EQLYDMFQQILVIKKFEHQLLFNALQLDSADEQTAA 467
RP +L L++ QL + F +IL + DE T
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEG---------FAADDEPTTP 57
Query: 468 ----------IRRELDNLEGGRY------FFNAFKESESILYACDDENEYHLWVMAMYRA 511
+ ++ + G++ F EN Y
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF------------ENCY---------- 95
Query: 512 TGQSHKPTPLNSNAVKNSTISKLQGDTDK---ARKHGMEEFISAD------PSKMEHSSL 562
L N + ++ +KL + D K ++ +I+A K +S+L
Sbjct: 96 ---------LEGNDI-HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 563 FKSLQSLTLEYRLNDPYCSMGWYSPGQ---LFVLDEYTARYGVRGCYRHLILLDDLLDRS 619
F+++ +L G GQ +E Y Y L+ DL+ S
Sbjct: 146 FRAVGE--GNAQL---VAIFG----GQGNTDDYFEELRDLYQT---YHVLV--GDLIKFS 191
Query: 620 EKNTMIDPTLIHCSFAFCSSHVLGNRPEGVVGTVTQEEKNRFNVIKERLKELLINQITNF 679
+ TL + + +G N++ E L N
Sbjct: 192 AE------TLSELIRTTLDAEKV--FTQG------------LNIL-----EWLEN----- 221
Query: 680 RYAFPFGRP-EGILKS-TLS-----LLE----RVLMKDSVTPVQPEEVREVIK------K 722
P P + L S +S +++ V K + P E+R +K +
Sbjct: 222 ----PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK--LLGFTPGELRSYLKGATGHSQ 275
Query: 723 CLETAALINYSKLSSEARVEEDLTAEGGVSPSKKLEDLIHLGELCVDLLQQNEEHYAEAF 782
L TA I +E E S K + L +G C + + +
Sbjct: 276 GLVTAVAI------AETDSWESFFV----SVRKAITVLFFIGVRC----YEAYPNTSLPP 321
Query: 783 AWYSDLLVEHAEIFWS-LFAV-DMDQVLAEQPSDTWDSFPLFQILNEYLRADEN----LK 836
+ D +E+ E S + ++ ++ Q + N +L A + L
Sbjct: 322 SILED-SLENNEGVPSPMLSISNLTQEQVQD---------YVNKTNSHLPAGKQVEISLV 371
Query: 837 NGR--------------FHQHLREYFAP----------------LVVRYV--------DL 858
NG + LR+ AP R++ L
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL 431
Query: 859 MESSIAQSIHKGFEKEKWEIKGNGCATSEDL----FWKLDALQSFIRDLHWPDQEFNQHL 914
+ + I+K K +D+ + D DL + + +
Sbjct: 432 LVPASDL-INKDLVKNNVSFNA------KDIQIPVYDTFDG-----SDL----RVLSGSI 475
Query: 915 EQRLKLMACDMIESCIMRTESAFQSWLKKGVSFVSTDYII 954
+R+ D I + + W + F +T +I+
Sbjct: 476 SERI----VDCI--IRLPVK-----W-ETTTQFKAT-HIL 502
Score = 50.8 bits (121), Expect = 3e-06
Identities = 40/280 (14%), Positives = 87/280 (31%), Gaps = 87/280 (31%)
Query: 814 DTWDSFPLFQ-ILNEYLRADENLKNGRFHQHLRE-Y-FAPL-VVR-----YVDLMESSIA 864
D + + Q + N RAD H ++ Y F+ L +V
Sbjct: 1634 DLYKTSKAAQDVWN---RADN---------HFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 865 QSIHKGFEKEKWEIKGNGCATSEDLFWKLDALQSFIRDLHWPDQEFNQHLEQRLKLM--- 921
+ I + + +E +G +E +F +++ + + + L
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEH---STSYTF------RSEKGLLSATQFT 1732
Query: 922 --ACDMIESCIMRTESA-FQSWLKKGVSFVSTDYII--HS--EMCAMINIIADAKNQSLK 974
A + E A F+ KG+ + D HS E A
Sbjct: 1733 QPA-------LTLMEKAAFEDLKSKGL--IPADATFAGHSLGEYAA-------------- 1769
Query: 975 LCAVDGIDVHQYHIKIDDLIEKTSANMIQGLISKLVAVLENTLAKLSRYDE-GSLIGSIL 1033
L ++ + + I+ L+ ++V T+ DE G ++
Sbjct: 1770 LASLADV------MSIESLV-------------EVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 1034 SLTNVSGNGKELGQAYVNFSRNNMDQIRSKINDELWILNF 1073
++ N Q + + ++++ + + I+N+
Sbjct: 1811 AI-NPGRVAASFSQEAL---QYVVERVGKRTGWLVEIVNY 1846
Score = 47.0 bits (111), Expect = 5e-05
Identities = 40/286 (13%), Positives = 85/286 (29%), Gaps = 94/286 (32%)
Query: 582 MGWYSPGQLFVLDEYTARYGVRGCYRHLILLDDLLDRSEKNTMIDPTLIHCSFAFCSSHV 641
MG +D Y + D+ +R++ + ++ F +
Sbjct: 1631 MG---------MDLYKTSKAAQ----------DVWNRADNHFKD-------TYGFSILDI 1664
Query: 642 LGNRPEGVV----GTVTQEEKNRFNVIK-------ERLKELLINQITNFRYAFPFGRPEG 690
+ N P + G + + ++ + + E + +I ++ F +G
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG 1724
Query: 691 ILKSTLSLLERVLMKDSVTPVQPEEVREVIKKCLETAALINYSKLSSEARVEED------ 744
+L +T T QP L + L S+ + D
Sbjct: 1725 LLSAT-----------QFT--QP---------ALTLMEKAAFEDLKSKGLIPADATFAGH 1762
Query: 745 -------LTAEGGVSPSKKLEDLIHL----GELCVDLLQQNEEHYAEAFAWYSDLLVEHA 793
L + V +E L+ + G + ++E + Y + +
Sbjct: 1763 SLGEYAALASLADVMS---IESLVEVVFYRGMTMQVAVPRDE----LGRSNYGMIAINPG 1815
Query: 794 EIFWSLFAVDMDQVLAEQPSDT-WDSFPLFQILNEYLRADENLKNG 838
+ S + V+ T W L +I+N Y N++N
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGW----LVEIVN-Y-----NVENQ 1851
Score = 44.3 bits (104), Expect = 3e-04
Identities = 65/423 (15%), Positives = 129/423 (30%), Gaps = 145/423 (34%)
Query: 761 IHLGELCVDLLQQNEEHYA-----EAFAWYSDLLVEHAEIFWS---------LFAVDMDQ 806
+ G L LL + E F + +L E E F + L +
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQF---NKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 807 VLAEQPSDTWDSFP--LFQILNE----YLR------------ADENLKNGRFHQHLREYF 848
V + F L L E YL + + + + ++ Y
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 849 APLVV---RYVDLMESSIAQSIHKGFEKEKWEIK------GNGCATSEDLFWKLDALQSF 899
++ + S++ +++ +G + G G ++D F + L
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEG------NAQLVAIFGGQG--NTDDYF---EEL--- 173
Query: 900 IRDLHWPDQEFNQHLEQRLKLMACDMIE--SCIMRTESAFQ------SWLKKGVSFVSTD 951
RDL+ Q ++ + +K A + E + E F WL+ + D
Sbjct: 174 -RDLY---QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 952 Y---------II------------------HSEMCAMIN-------------IIADAKN- 970
Y +I E+ + + IA+ +
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 971 QSLKLCAVDGIDV--------HQY--HIKIDDLIEKTSANMIQGLISKLVAV-------L 1013
+S + I V ++ + + I + S +G+ S ++++ +
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 1014 ENTLAKLSRY-DEGSLIGSILSLTN------VSGNGKELGQAYVNFSRN-----NMDQIR 1061
++ + K + + G + I SL N VSG + L R +DQ
Sbjct: 350 QDYVNKTNSHLPAGKQV-EI-SLVNGAKNLVVSGPPQSL-YGLNLTLRKAKAPSGLDQ-- 404
Query: 1062 SKI 1064
S+I
Sbjct: 405 SRI 407
Score = 42.3 bits (99), Expect = 0.001
Identities = 44/299 (14%), Positives = 83/299 (27%), Gaps = 115/299 (38%)
Query: 844 LREYFAPLVVRYVDLMESSIAQSIHKGFEKEKWEIKGNGCATSEDLFWKLDALQ-SFIRD 902
R PL + + S+ + F+ LQ F +
Sbjct: 6 TR----PLTLSH-----GSLEHVLL----------------VPTASFFIASQLQEQFNKI 40
Query: 903 LHWPDQEFNQHLEQR--LKLMA--CDMIESCIMRTE-SAFQSWLKKGVSFVSTDYI---- 953
L P + F E +L+ + S + ++ F L ++ Y+
Sbjct: 41 LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND 100
Query: 954 IHS------------------------EMCAMIN----------IIADAKNQSLKLCAVD 979
IH+ M + + +L A+
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 980 G----IDVHQYHIKIDDLIE--KTSANMIQGLISKLVAVLENTLAKLSR--------YDE 1025
G D Y ++L + +T L+ L+ TL++L R + +
Sbjct: 161 GGQGNTDD--Y---FEELRDLYQTY----HVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 1026 GSLIGSILS-LTN--------------VSGNGKELGQA--YVNFSRN---NMDQIRSKI 1064
G +IL L N +S + Q YV ++ ++RS +
Sbjct: 212 GL---NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Score = 38.1 bits (88), Expect = 0.022
Identities = 31/196 (15%), Positives = 64/196 (32%), Gaps = 58/196 (29%)
Query: 64 DQAEASKPMWDTQADFSTNQPLPAIKVKLFTENPGMLA-LEDKELGKVILRPTPLSSKAP 122
++A++ +W+ +AD + + NP L E GK I R
Sbjct: 1637 KTSKAAQDVWN-RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI-R--------- 1685
Query: 123 EWHKMLVPKNCADQDLKIKIACRMEKPLNMKHCGY------------------LFAYGKS 164
E + ++ + D LK + ++ K +N Y L K+
Sbjct: 1686 ENYSAMIFETIVDGKLKTE---KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 165 TWRKWKKRYFVLVQV-----S--QYTFAMCSFKEKKSDPSEFMQLDGYTVDYIE------ 211
+ K + + S +Y A+ S ++ M ++ +E
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYA-ALASL-------ADVMSIE----SLVEVVFYRG 1790
Query: 212 PASEKVSPRDSISQAH 227
+ PRD + +++
Sbjct: 1791 MTMQVAVPRDELGRSN 1806
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 48.7 bits (116), Expect = 4e-07
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 151 NMKHCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVD 208
GYL Y W+ R+FVL + + + + P +QL G +
Sbjct: 7 GENVYGYLMKYTN-LVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVIS 63
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 44.3 bits (105), Expect = 1e-05
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVDYIEPA 213
G+LF S ++W KR+FVLV + + EK+ + L + V ++P+
Sbjct: 13 KAGWLFKQASSGVKQWNKRWFVLVDRCLFYYK----DEKEESILGSIPLLSFRVAAVQPS 68
Query: 214 SEK 216
Sbjct: 69 DNI 71
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 44.0 bits (104), Expect = 2e-05
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVDYIEPA 213
G+LF S ++W KR+FVLV + + EK+ + L + V ++P+
Sbjct: 24 KAGWLFKQASSGVKQWNKRWFVLVDRCLFYYK----DEKEESILGSIPLLSFRVAAVQPS 79
Query: 214 SEK 216
Sbjct: 80 DNI 82
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 42.3 bits (99), Expect = 1e-04
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 154 HCGYLF-----AYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSD--PSEFMQLDGYT 206
G+L+ + T R +K+R+F L+Q+ ++ + +K++K P + LD
Sbjct: 20 KHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCM 79
Query: 207 VDYIEPASEK 216
+
Sbjct: 80 GVVQNNKVRR 89
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 41.7 bits (98), Expect = 2e-04
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSD-PSEFMQLDGYTVDYIEP 212
G+L+ + + WKKR+FVL + ++++K + + L + + +
Sbjct: 23 RRGWLYKQDSTGMKLWKKRWFVLSD-----LCLFYYRDEKEEGILGSILLPSFQIALLTS 77
Query: 213 ASEK 216
Sbjct: 78 EDHI 81
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 41.2 bits (97), Expect = 2e-04
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVDYIEPA 213
GYL+ S + WK +FV+ YT+A + ++ E L G+TV ++
Sbjct: 10 MSGYLYRSKGS-KKPWKHLWFVIKNKVLYTYA--ASEDVA--ALESQPLLGFTVTLVKDE 64
Query: 214 SEK 216
+ +
Sbjct: 65 NSE 67
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 40.9 bits (96), Expect = 3e-04
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKS-DPSEFMQLDGYTVDYIEP 212
G+L S R WK+R+FVL + +K+ + + L Y + P
Sbjct: 13 IRGWLHKQDSSGLRLWKRRWFVLSG-----HCLFYYKDSREESVLGSVLLPSYNIRPDGP 67
Query: 213 ASEK 216
+ +
Sbjct: 68 GAPR 71
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 40.7 bits (95), Expect = 4e-04
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 155 CGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSD-PSEFMQLDGYTVDYIEPA 213
CG+L K+ +RYF+L + + + + + + YI
Sbjct: 18 CGFLDIEDNENSGKFLRRYFIL---DTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKV 74
Query: 214 SE 215
S
Sbjct: 75 SI 76
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 38.9 bits (91), Expect = 0.001
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 154 HCGYLFAYGK--STWRKWKKRYFVLVQVSQYTFAMCSFKEKKS-DPSEFMQLDGYTVDYI 210
G+L K S + W++RYFVL + +K+++ P M L G T+ I
Sbjct: 10 KMGWLK---KQRSIVKNWQQRYFVLRA-----QQLYYYKDEEDTKPQGCMYLPGCTIKEI 61
Query: 211 EPASEKVSP 219
E+
Sbjct: 62 ATNPEEAGK 70
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 39.3 bits (91), Expect = 0.001
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 151 NMKHCGYLFAYGK-STWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVDY 209
+++ G+L + S + W +R+ VL + EK+ +P + L T
Sbjct: 4 SVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYW-TYPDDEKRKNPIGRINLANCTSRQ 62
Query: 210 IEPASEKVSPRD 221
IEPA+ + R
Sbjct: 63 IEPANREFCARR 74
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 37.6 bits (87), Expect = 0.005
Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 8/69 (11%)
Query: 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFK---EKKSDPSEFMQLDGYTVDYI 210
G+L+ S R+WK+ +F L + + + + + + +
Sbjct: 10 RGGWLWRQS-SILRRWKRNWFALWLDGTLGY----YHDETAQDEEDRVVIHFNVRDIKVG 64
Query: 211 EPASEKVSP 219
+ + P
Sbjct: 65 QECQDVQPP 73
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 37.6 bits (87), Expect = 0.007
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 7/65 (10%)
Query: 154 HCGYLF---AYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVDYI 210
GYL +W+KR+ L + Y + +K +DGY V
Sbjct: 19 KAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYG----SDKDKQQKGEFAIDGYDVRMN 74
Query: 211 EPASE 215
+
Sbjct: 75 NTLRK 79
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 36.7 bits (85), Expect = 0.007
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 6/54 (11%)
Query: 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTV 207
YL +WK R+ + + + + + + + L G V
Sbjct: 10 TSSYLNVLVN---SQWKSRWCSVRDNHLHFYQD---RNRSKVAQQPLSLVGCEV 57
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 36.6 bits (85), Expect = 0.009
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 151 NMKHCGYLFAYG-KSTWRKWKKRYFVL 176
K CGYL +G K R WK R+F
Sbjct: 7 GKKLCGYLSKFGGKGPIRGWKSRWFFY 33
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 112
Score = 36.1 bits (83), Expect = 0.010
Identities = 6/63 (9%), Positives = 14/63 (22%), Gaps = 5/63 (7%)
Query: 155 CGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSD-PSEFMQLDGYTVDYIEPA 213
CG L W + + + + + + L + +P
Sbjct: 11 CGPLRLSESG--ETWSEVWAAIPMSDPQVLHL--QGGSQDGRLPRTIPLPSCKLSVPDPE 66
Query: 214 SEK 216
Sbjct: 67 ERL 69
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 35.9 bits (83), Expect = 0.012
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Query: 154 HCGYLF---AYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVDYI 210
GYL +W+KR+ V+ + Y +A EK P + GY+V
Sbjct: 5 KQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYA----NEKSKQPKGTFLIKGYSVRMA 60
Query: 211 EPASE 215
Sbjct: 61 PHLRR 65
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 36.4 bits (83), Expect = 0.012
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 155 CGYLFAYGKSTWRK-WKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTV 207
+L ++ K WKK+Y L + S + M L TV
Sbjct: 7 QSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTV 60
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 37.4 bits (86), Expect = 0.014
Identities = 18/105 (17%), Positives = 29/105 (27%), Gaps = 10/105 (9%)
Query: 114 PTPLSSKAPEWHKMLVPKNCADQDLKIKIACRMEKPLNMKHCGYLF---AYGKSTWRKWK 170
P S A E + A + + GYL +W+
Sbjct: 71 PADTISLASERYDKDDDGPSDGNQFPPIAAQDLPFVI---KAGYLEKRRKDHSFLGFEWQ 127
Query: 171 KRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVDYIEPASE 215
KR+ L + Y + +K +DGY V +
Sbjct: 128 KRWCALSKTVFYYYG----SDKDKQQKGEFAIDGYDVRMNNTLRK 168
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 35.8 bits (83), Expect = 0.014
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKK-SDPSEFMQLDGYTVDYIEP 212
GYL G + WK + VL++ + +K+K + P + L G T+
Sbjct: 7 REGYLVKKGSV-FNTWKPMWVVLLE-----DGIEFYKKKSDNSPKGMIPLKGSTLTSPCQ 60
Query: 213 ASEK 216
K
Sbjct: 61 DFGK 64
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 35.6 bits (82), Expect = 0.018
Identities = 9/68 (13%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFK-EKKSDPSEFMQLDGYTVDYIEP 212
G+L + ++WKK +F L + + + + + + + + ++ I
Sbjct: 7 KSGWLLRQS-TILKRWKKNWFDLWSDGHLIY----YDDQTRQNIEDKVHMPMDCIN-IRT 60
Query: 213 ASEKVSPR 220
E +
Sbjct: 61 GQECRDTQ 68
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 35.5 bits (82), Expect = 0.019
Identities = 10/64 (15%), Positives = 15/64 (23%), Gaps = 7/64 (10%)
Query: 156 GYLF---AYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVDYIEP 212
G L WK + VL Y + P + + G
Sbjct: 4 GMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYP----DRTDVIPLLSVNMGGEQCGGCRR 59
Query: 213 ASEK 216
A+
Sbjct: 60 ANTT 63
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 34.7 bits (80), Expect = 0.027
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKS-DPSEFMQLDGYTVDYIEP 212
G L G + WK R F+L + Y + + + DP + L G V +E
Sbjct: 9 KQGCLLKQGHR-RKNWKVRKFILREDPAY---LHYYDPAGAEDPLGAIHLRGCVVTSVES 64
Query: 213 ASEK 216
S
Sbjct: 65 NSNG 68
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 35.1 bits (81), Expect = 0.031
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFK-EKKSDPSEFMQLDGYTVDYIEP 212
G L G + WK R F+L + Y + + DP + L G V +E
Sbjct: 20 KQGCLLKQG-HRRKNWKVRKFILREDPAY---LHYYDPAGAEDPLGAIHLRGCVVTSVES 75
Query: 213 ASEK 216
S
Sbjct: 76 NSNG 79
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 35.0 bits (80), Expect = 0.033
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 163 KSTWRKWKKRYFVLVQVSQYTFAMCSFKEK-----KSDPSEFMQLDGYTVDYIEPASEK 216
K W + + VL + + S + KS P + + + G+ V +
Sbjct: 18 KPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLPDDPEHP 76
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 34.7 bits (80), Expect = 0.035
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 154 HCGYLFAYGKSTWRKWKKRYFVL 176
G+L R ++KR+
Sbjct: 10 KSGWLDKLSPQGKRMFQKRWVKF 32
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 34.2 bits (78), Expect = 0.060
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 150 LNMKHCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVDY 209
N G+L G + WK+R+F+L Y F +P + L+ ++
Sbjct: 3 FNPDREGWLLKLG-GRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLENLSIRE 57
Query: 210 IEPASEK 216
+ +
Sbjct: 58 VLDPRKP 64
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 34.0 bits (78), Expect = 0.062
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 156 GYLFAYGKSTWRKWKKRYFVL 176
GYL + W++R +
Sbjct: 14 GYLLKKSDGIRKVWQRRKCSV 34
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 33.8 bits (77), Expect = 0.077
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Query: 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTV----DY 209
G+L K + + K Y+VL + F + ++K P + L TV
Sbjct: 8 KSGFLERRSKFL-KSYSKGYYVLTPNFLHEFK-TADRKKDLVPVMSLALSECTVTEHSRK 65
Query: 210 IEPASEKVSPRDSISQAHIRNASPITRQNSHT 241
+S + D+ H + I R ++
Sbjct: 66 NSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWV 97
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 33.7 bits (77), Expect = 0.100
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 145 RMEKPLNMKHCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSD-PSEFMQLD 203
+E + GYL G + WK R FVL + + K+ + P L
Sbjct: 11 TVELSGTVVKQGYLAKQG-HKRKNWKVRRFVLRKDPAFLH--YYDPSKEENRPVGGFSLR 67
Query: 204 GYTVDYIEPASEKVSPRDS 222
G V +E + +
Sbjct: 68 GSLVSALEDNGVPTGVKGN 86
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 33.2 bits (76), Expect = 0.11
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 151 NMKHCGYLFAYGKSTWRKWKKRYFVL 176
+ G L+ G + + WK R+FVL
Sbjct: 7 GRSYEGILYKKG-AFMKPWKARWFVL 31
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.16
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 9/36 (25%)
Query: 439 QQILVIKKFEHQLLFNALQLDSADEQTA-AIRRELD 473
Q + KK + +L+L + D A AI+ ++
Sbjct: 20 QAL---KKLQ-----ASLKLYADDSAPALAIKATME 47
Score = 31.5 bits (70), Expect = 0.86
Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 908 QEFNQHLEQRLKLMACD 924
Q + L+ LKL A D
Sbjct: 20 QALKK-LQASLKLYADD 35
Score = 30.7 bits (68), Expect = 1.7
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 11/40 (27%)
Query: 657 EKNRFNVIKERLKELLINQITNFRYAFPFGRPEGILKSTL 696
EK ++ LK YA P +K+T+
Sbjct: 18 EKQALKKLQASLK----------LYA-DDSAPALAIKATM 46
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 32.8 bits (74), Expect = 0.25
Identities = 9/67 (13%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 150 LNMKHCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVDY 209
L + G+L R+++ + L + + + +K + + + T
Sbjct: 16 LPLYFEGFLLIKRSGY-REYEHYWTELRGTTLFFYT----DKKSIIYVDKLDIVDLTCLT 70
Query: 210 IEPASEK 216
+ ++EK
Sbjct: 71 EQNSTEK 77
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 32.4 bits (73), Expect = 0.26
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 156 GYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVDYIEPASE 215
+L + T + W K + VL + +K + L+ + IE S+
Sbjct: 12 DWL--KIRGTLKSWTKLWCVLKPGVLLIYK----TQKNGQWVGTVLLNACEI--IERPSK 63
Query: 216 K 216
K
Sbjct: 64 K 64
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 32.2 bits (73), Expect = 0.34
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEF-MQLDGYTVD 208
G+L G+ + W+ RYF+L + +KE+ D + L+ ++V
Sbjct: 10 KEGWLHKRGEY-IKTWRPRYFLLKNDGTFIG----YKERPQDVDQREAPLNNFSVA 60
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 32.3 bits (73), Expect = 0.36
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 155 CGYL--FAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVDYIEP 212
+L F K T + +++ + V + + + S E DP + + L G V
Sbjct: 12 KDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYK--SQDEAPGDPIQQLNLKGCEVVPDVN 69
Query: 213 ASEK-------VSPRDSISQAHIRNASPITRQ 237
S + V + +S+ ++R
Sbjct: 70 VSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYA 101
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH,
RAS-associating, pleckstrin-homology, adapter
phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Length = 256
Score = 33.2 bits (75), Expect = 0.40
Identities = 10/94 (10%), Positives = 29/94 (30%), Gaps = 2/94 (2%)
Query: 126 KMLVPKNCADQDLKIKIACRMEKPLNMKHCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFA 185
+M+ ++ + + + + G+L + WKK Y L + Y
Sbjct: 106 QMVTWSQQSNGSQTQLLQNFLNSSSSPEIQGFLHVKELG-KKSWKKLYVCLRRSGLYCST 164
Query: 186 MCSFKEKKSDPSEFMQLDGYTVDYIEPASEKVSP 219
+ + L+ + + ++ +
Sbjct: 165 KGTSAAPR-HLQLLADLEDSNIFSLIAGRKQYNA 197
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 32.3 bits (73), Expect = 0.42
Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 25/140 (17%)
Query: 30 LEVIVMEVKGLKSLAPNRIVYCTMEVEGGEKLQTDQAEASKPMWDTQADFSTNQPLPAIK 89
L V V + K + Y T++V + T S+P W+ F N+ +
Sbjct: 16 LCVGVKKAKFDGAQEKFN-TYVTLKV-QNVESTTIAVRGSQPSWEQDFMFEINRLDLGLT 73
Query: 90 VKLFTENPGMLALEDKELGKVILRPTPLSS-------KAPEWHKMLVPKNCADQDL---- 138
V+++ + + D +G V + PL + EW + AD ++
Sbjct: 74 VEVWNKGL----IWDTMVGTVWI---PLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTK 126
Query: 139 -----KIKIACRMEKPLNMK 153
+I + E PL++
Sbjct: 127 DPTFHRILLDAHFELPLDIP 146
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 31.2 bits (71), Expect = 0.61
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 154 HCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKS-DPSEFMQLDGYTVDYIEP 212
GYL G + WK R+F L + + FK++ S +P + L + +
Sbjct: 20 KEGYLTKQG-GLVKTWKTRWFTLHRNE-----LKYFKDQMSPEPIRILDLTECSAVQFDY 73
Query: 213 ASEK 216
+ E+
Sbjct: 74 SQER 77
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 31.0 bits (70), Expect = 0.76
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 145 RMEKPLNMKHCGYLFAYGKSTWRKWKKRYFVL 176
LNM + G+ + W + VL
Sbjct: 13 EKSGLLNMTK---IAQGGRKLRKNWGPSWVVL 41
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 30.9 bits (70), Expect = 0.81
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 154 HCGYLFAYGKSTWRKWKKRYFVL 176
GY G + WK+RYF L
Sbjct: 16 KAGYCVKQGAV-MKNWKRRYFQL 37
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 32.4 bits (74), Expect = 0.83
Identities = 21/149 (14%), Positives = 54/149 (36%), Gaps = 10/149 (6%)
Query: 152 MKHCGYLFAYGKSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQ-LDGYTVDYI 210
+ G+L G+ + W+ RYF+L + +KE+ D + L+ ++V
Sbjct: 6 IVKEGWLHKRGEY-IKTWRPRYFLLKNDGTFIG----YKERPQDVDQREAPLNNFSVAQC 60
Query: 211 EPASEKVSPRDSISQAHIRNASPITRQNSHTDNLDKEVMDPQDSQEKQEEERKRRIQLYV 270
+ + ++ ++ + I R T +++ + + Q + Q
Sbjct: 61 QLMKTERPRPNTFIIRCLQWTTVIER----TFHVETPEEREEWTTAIQTVADGLKKQAAA 116
Query: 271 FVSRCIAYPFNSKQSTDMIRRHSKITRHL 299
+ P ++ + +M +K +
Sbjct: 117 EMDFRSGSPSDNSGAEEMEVSLAKPKHRV 145
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 30.8 bits (70), Expect = 0.85
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 154 HCGYLFAYGKSTWRKWKKRYFVL 176
GY+ G + W +R+FVL
Sbjct: 10 KQGYMMKKGHR-RKNWTERWFVL 31
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 29.7 bits (67), Expect = 1.3
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 155 CGYLFAYGKSTWRKWKKRYFVL 176
CG L + W+ R+ VL
Sbjct: 4 CGVLSKWTNY-IHGWQDRWVVL 24
>3etv_A Protein transport protein TIP20,linker,protein transport protein
DSL1; TIP20P-DSL1P complex, endoplasmic reticulum,
ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB:
3etu_A
Length = 355
Score = 31.7 bits (71), Expect = 1.6
Identities = 28/232 (12%), Positives = 70/232 (30%), Gaps = 32/232 (13%)
Query: 848 FAPLVVRYVDLMESSIAQSIHKGFEKEKWEIKGNGCATSEDLFWKLDALQ-------SFI 900
F + YVD + + +++K W+I N + + W D + F+
Sbjct: 120 FQQSISTYVDTLHLELVSTLYKILTNGFWKITENSIQFTPTVEWGKDKVHIEYDTFMDFV 179
Query: 901 RDLHWPDQEFNQHLEQRLKLMACDMIESCIMRTESAFQSWLK-KGVSFVSTDYIIHSEMC 959
++P + L + + D E + + + ++ + + + I S
Sbjct: 180 AQQYFPKGSLDNQAWFILDMTSADSQEQVRAKLNTIMKEYMNLSRIVSMIKNSIFISGKE 239
Query: 960 AMINIIADAKNQSLKLCAVDGIDVHQYHIKIDDLIEKTSANMIQGLISKLVAVLENTLAK 1019
+ + G + ++ + + + LA
Sbjct: 240 ISYE--NEKNILVFSKSSSHGQH------CVSTVLTS---------FEAVCDFMLDGLAF 282
Query: 1020 LSRYDEGSLIGSILS---LTNVSGNGKELGQAYVNFSRNNMDQIRSKINDEL 1068
R +G + + V N + + + + + S IN++L
Sbjct: 283 RDRKTLSYELGPLFNTEFTKFVKNNASII----LESLDSPLKNLVSVINNKL 330
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 29.9 bits (67), Expect = 1.7
Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 6/76 (7%)
Query: 145 RMEKPLNMKHCGYLFAYGKSTWRKWKKRYFVLV--QVSQYTFAMCSFKEKKSDPSEFMQL 202
+ME L K K+ R W+ Y VL + Y A + + L
Sbjct: 9 QMEGMLCRKQE-MEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSL 67
Query: 203 DGYTVDYIEPASEKVS 218
A +
Sbjct: 68 ARAQG---SVAFDYRK 80
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 30.5 bits (69), Expect = 1.7
Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 18/130 (13%)
Query: 29 QLEVIVMEVKGLKSLAPNRIV--YCTMEVEGGEKLQTDQAEASK-PMWDTQADFSTNQPL 85
++ + V+ +GL++ Y T++V G K +T + P+W+ F +
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQV-GKTKKRTKTIYGNLNPVWEENFHFECHNSS 76
Query: 86 PAIKVKLFTENPGMLAL--------EDKELGKVILRPTPLSSKAPEWHKMLVPKNCADQD 137
IKV++ E+ + + D LG+ I+ LS + W+ L +
Sbjct: 77 DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYN-LDKRTDKSAV 135
Query: 138 -----LKIKI 142
L I +
Sbjct: 136 SGAIRLHISV 145
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 127
Score = 30.1 bits (67), Expect = 1.9
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 154 HCGYLFAYGKSTWRK-WKKRYFVLVQVSQYTFA 185
G+L+ + T+ K W++ L S A
Sbjct: 14 KQGFLYLQQQQTFGKKWRRFGASLYGGSDCALA 46
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 31.1 bits (69), Expect = 2.0
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 143 ACRMEKPLNMKHCGYLFAYGK----STWRKWKKRYFVL 176
R L +K+ + K +T RKWK + L
Sbjct: 10 TVRKAGALAVKN-FLVHKKNKKVESATRRKWKHYWVSL 46
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 31.2 bits (70), Expect = 2.2
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 106 ELGKVILRPTPLSSKAPEWHKMLVPKNCADQDLKIKIACRMEKPLNMKHCGYLFAYGKST 165
E GK I+ A + + +D DL K++ K GY+ G
Sbjct: 229 EDGKEIVDWFNALRAARFHYLQVAFPGASDADLVPKLSRNYLKE------GYMEKTGPKQ 282
Query: 166 WRKWKKRYFVL 176
++KR+F +
Sbjct: 283 TEGFRKRWFTM 293
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 29.5 bits (66), Expect = 2.2
Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 146 MEKPLNMKHCGYLFAYGK-STWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDG 204
ME LN KH A+ K ++ R W Y V+ + F + P
Sbjct: 1 MEGFLNRKH--EWEAHNKKASSRSWHNVYCVI-NNQEMGFYKDAKSAASGIPYHSEVPVS 57
Query: 205 YTVDYIEPASEKVS 218
E A +
Sbjct: 58 LKEAICEVALDYKK 71
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 30.3 bits (68), Expect = 2.6
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 154 HCGYLF----AYGKSTWRKWKKRYFVL 176
G+L + R WKKR+FVL
Sbjct: 60 KQGWLHNNGGGSSTLSRRNWKKRWFVL 86
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 29.9 bits (66), Expect = 2.7
Identities = 10/94 (10%), Positives = 26/94 (27%), Gaps = 6/94 (6%)
Query: 156 GYLFAYG----KSTWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQLDGYTVDYIE 211
K++ +KK F+L + + ++ + ++ + +E
Sbjct: 7 SIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVE--KITCVE 64
Query: 212 PASEKVSPRDSISQAHIRNASPITRQNSHTDNLD 245
+ +P S Q S +
Sbjct: 65 TVVPEKNPPPERQIPRRGEESSEMEQISIIERFP 98
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein; 1.90A
{Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 29.0 bits (65), Expect = 3.0
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 156 GYLFAYGKSTWRKWKKRYFVL 176
G L+ + W+ R+FVL
Sbjct: 3 GVLYKWTNY-LTGWQPRWFVL 22
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 28.8 bits (64), Expect = 4.0
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 146 MEKPLNMKHCGYLFAYGK-STWRKWKKRYFVL 176
E + KH + K ++ R W K Y
Sbjct: 10 HEGYVTRKH--EWDSTTKKASNRSWDKVYMAA 39
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 29.4 bits (65), Expect = 4.1
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 145 RMEKPLNMKHCGYLFAYGK---STWRKWKKRYFVLVQVSQYTFAMCSFKEKKSDPSEFMQ 201
E L+ + + GK + R WK+ Y VL S Y + + S+ + +
Sbjct: 4 AKEGWLHFRPL--VTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPIS 61
Query: 202 LDGYTVDYIEPASEK 216
++ +D +++
Sbjct: 62 VNACLIDISYSETKR 76
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 29.9 bits (66), Expect = 4.5
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 139 KIKIACRMEKPLNMKHCGYLFAYGKSTW---RKWKKRYFVL 176
K + R L K L K RKWK+ + L
Sbjct: 6 KEQGVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTL 46
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 28.8 bits (64), Expect = 4.5
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 16/102 (15%)
Query: 30 LEVIVMEVKGLKSLAPNRIVYCTMEVEGGEKLQTDQAEASKPMWDTQADFSTNQPLPAIK 89
L V V + K + Y T++V K T S+P W+ F N+ +
Sbjct: 7 LCVGVKKAKFDGAQEKFN-TYVTLKV-QNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLT 64
Query: 90 VKLFTENPGMLALEDKELGKVILRPTPLSS-------KAPEW 124
V+++ + + D +G V + PL + EW
Sbjct: 65 VEVWNKGL----IWDTMVGTVWI---PLRTIRQSNEEGPGEW 99
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 29.5 bits (65), Expect = 5.5
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 151 NMKHCGYLFAYGKSTWRKWKKRYFVLVQVSQYTF 184
+++ GYL K + KR+FVL S+
Sbjct: 9 DVRKVGYLR---KP--KSMHKRFFVLRAASEAGG 37
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 27.9 bits (62), Expect = 8.5
Identities = 4/32 (12%), Positives = 8/32 (25%), Gaps = 2/32 (6%)
Query: 145 RMEKPLNMKHCGYLFAYGKSTWRKWKKRYFVL 176
L+ + + W + VL
Sbjct: 9 DKAGVLHRTK--TADKGKRLRKKHWSASWTVL 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.392
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,108,359
Number of extensions: 1031648
Number of successful extensions: 2161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2129
Number of HSP's successfully gapped: 83
Length of query: 1150
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1046
Effective length of database: 3,798,009
Effective search space: 3972717414
Effective search space used: 3972717414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.2 bits)