Query psy11344
Match_columns 586
No_of_seqs 448 out of 2298
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 16:00:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2156|consensus 100.0 5.1E-63 1.1E-67 507.0 19.7 301 1-322 212-524 (662)
2 PF03133 TTL: Tubulin-tyrosine 100.0 1E-60 2.2E-65 492.0 4.3 267 39-321 5-283 (292)
3 KOG2157|consensus 100.0 4E-53 8.6E-58 449.5 16.6 305 2-323 92-426 (497)
4 KOG2158|consensus 100.0 3.8E-47 8.1E-52 385.9 7.6 270 19-301 151-435 (565)
5 KOG2155|consensus 100.0 3.1E-31 6.7E-36 267.9 10.7 260 19-301 331-607 (631)
6 PF14398 ATPgrasp_YheCD: YheC/ 99.9 2.7E-23 5.9E-28 209.7 15.3 196 52-300 15-241 (262)
7 cd01650 RT_nLTR_like RT_nLTR: 99.1 7.6E-11 1.6E-15 116.0 7.2 114 422-570 5-128 (220)
8 PF08443 RimK: RimK-like ATP-g 98.9 1.8E-09 3.8E-14 104.2 7.2 147 77-297 18-174 (190)
9 cd01651 RT_G2_intron RT_G2_int 98.9 1.2E-09 2.7E-14 107.6 6.0 131 422-564 3-140 (226)
10 COG0189 RimK Glutathione synth 98.8 3.5E-08 7.5E-13 102.3 12.5 150 75-296 132-293 (318)
11 TIGR02291 rimK_rel_E_lig alpha 98.8 2.2E-08 4.8E-13 103.0 10.1 46 241-295 228-273 (317)
12 PLN02941 inositol-tetrakisphos 98.8 5.6E-08 1.2E-12 100.7 12.3 111 41-164 93-207 (328)
13 TIGR00768 rimK_fam alpha-L-glu 98.8 2.9E-08 6.2E-13 101.1 9.7 70 76-162 102-184 (277)
14 PRK10446 ribosomal protein S6 98.7 1.2E-07 2.5E-12 98.2 12.0 125 108-295 136-268 (300)
15 PF00078 RVT_1: Reverse transc 98.7 5.3E-09 1.1E-13 101.8 1.6 132 424-564 1-139 (214)
16 PRK05246 glutathione synthetas 98.6 1.1E-07 2.3E-12 99.3 8.2 84 75-184 133-229 (316)
17 TIGR02144 LysX_arch Lysine bio 98.5 6.7E-07 1.4E-11 91.4 11.5 49 108-162 123-183 (280)
18 PF13535 ATP-grasp_4: ATP-gras 98.5 1E-06 2.2E-11 83.7 11.7 87 53-162 2-100 (184)
19 PRK01372 ddl D-alanine--D-alan 98.4 1.9E-06 4.2E-11 89.2 11.7 47 108-162 134-188 (304)
20 PF14397 ATPgrasp_ST: Sugar-tr 98.4 7.9E-06 1.7E-10 83.8 14.8 212 50-297 21-265 (285)
21 PF02655 ATP-grasp_3: ATP-gras 98.3 1.4E-06 3E-11 81.8 7.5 39 107-145 31-71 (161)
22 PRK12458 glutathione synthetas 98.3 6E-06 1.3E-10 86.8 12.4 72 75-162 139-221 (338)
23 PRK14568 vanB D-alanine--D-lac 98.3 3.3E-06 7.2E-11 89.1 10.5 51 242-300 268-318 (343)
24 PRK01966 ddl D-alanyl-alanine 98.3 4.7E-06 1E-10 87.6 11.2 139 108-300 163-309 (333)
25 PF07478 Dala_Dala_lig_C: D-al 98.3 1.9E-06 4.2E-11 83.9 7.7 138 108-301 34-184 (203)
26 PRK14571 D-alanyl-alanine synt 98.2 6.3E-06 1.4E-10 85.3 11.3 142 107-301 125-274 (299)
27 TIGR01205 D_ala_D_alaTIGR D-al 98.2 7.5E-06 1.6E-10 85.2 11.1 140 107-300 146-293 (315)
28 PRK14569 D-alanyl-alanine synt 98.2 1.1E-05 2.3E-10 83.5 10.4 136 108-300 131-273 (296)
29 TIGR01380 glut_syn glutathione 98.1 7.8E-06 1.7E-10 85.1 9.2 70 75-162 132-213 (312)
30 TIGR03103 trio_acet_GNAT GNAT- 98.1 5.9E-06 1.3E-10 92.3 8.8 46 109-162 333-387 (547)
31 PF02955 GSH-S_ATP: Prokaryoti 98.1 3.7E-06 8.1E-11 79.3 6.1 85 75-185 10-106 (173)
32 PRK14572 D-alanyl-alanine synt 98.0 2.6E-05 5.7E-10 82.4 10.5 48 108-163 172-227 (347)
33 PRK14570 D-alanyl-alanine synt 98.0 6.3E-05 1.4E-09 79.9 11.8 144 108-301 172-325 (364)
34 COG1821 Predicted ATP-utilizin 97.9 6.5E-05 1.4E-09 73.3 10.6 34 107-145 138-171 (307)
35 TIGR01161 purK phosphoribosyla 97.9 9.7E-05 2.1E-09 78.2 12.1 38 108-145 134-178 (352)
36 cd03487 RT_Bac_retron_II RT_Ba 97.9 8.8E-06 1.9E-10 80.0 3.5 110 435-564 7-117 (214)
37 PLN02257 phosphoribosylamine-- 97.7 0.00015 3.2E-09 79.0 10.7 29 267-295 264-293 (434)
38 PRK12767 carbamoyl phosphate s 97.7 0.00024 5.2E-09 74.2 10.3 49 107-161 148-200 (326)
39 COG1181 DdlA D-alanine-D-alani 97.6 0.00024 5.1E-09 73.8 9.8 53 241-301 242-295 (317)
40 PRK06019 phosphoribosylaminoim 97.6 0.0004 8.6E-09 74.2 11.8 39 107-145 135-180 (372)
41 PRK07206 hypothetical protein; 97.6 0.0004 8.6E-09 75.3 11.6 38 108-145 147-199 (416)
42 PRK06849 hypothetical protein; 97.6 0.0003 6.5E-09 75.6 10.6 39 107-145 152-195 (389)
43 TIGR01142 purT phosphoribosylg 97.6 0.00039 8.5E-09 74.3 11.0 38 108-145 137-186 (380)
44 PRK13278 purP 5-formaminoimida 97.5 0.00078 1.7E-08 71.1 11.3 144 108-292 150-312 (358)
45 PRK14016 cyanophycin synthetas 97.5 0.00027 5.9E-09 81.7 8.4 47 108-162 250-305 (727)
46 PRK08462 biotin carboxylase; V 97.5 0.002 4.2E-08 70.6 14.5 39 108-146 155-207 (445)
47 TIGR01435 glu_cys_lig_rel glut 97.4 0.00051 1.1E-08 78.5 9.7 48 108-163 512-570 (737)
48 TIGR00514 accC acetyl-CoA carb 97.4 0.0031 6.8E-08 69.1 15.6 39 108-146 153-205 (449)
49 PRK05586 biotin carboxylase; V 97.4 0.0019 4E-08 70.8 13.7 38 108-145 153-204 (447)
50 PRK13789 phosphoribosylamine-- 97.4 0.0017 3.7E-08 70.5 12.8 29 267-295 270-298 (426)
51 TIGR01235 pyruv_carbox pyruvat 97.4 0.0022 4.8E-08 77.1 14.5 50 108-164 153-216 (1143)
52 PRK06524 biotin carboxylase-li 97.3 0.0017 3.8E-08 70.6 12.1 49 242-295 277-326 (493)
53 PRK12833 acetyl-CoA carboxylas 97.3 0.004 8.6E-08 68.6 14.5 39 108-146 156-208 (467)
54 PRK12999 pyruvate carboxylase; 97.3 0.0037 7.9E-08 75.6 14.8 40 108-147 157-210 (1146)
55 PRK08463 acetyl-CoA carboxylas 97.3 0.0045 9.8E-08 68.4 14.6 39 108-146 153-205 (478)
56 TIGR00877 purD phosphoribosyla 97.3 0.0045 9.7E-08 67.3 14.4 36 110-145 143-191 (423)
57 PRK00885 phosphoribosylamine-- 97.3 0.0041 8.8E-08 67.6 14.0 38 108-145 138-189 (420)
58 PRK14573 bifunctional D-alanyl 97.3 0.0011 2.3E-08 78.1 10.2 52 241-300 713-764 (809)
59 PRK13790 phosphoribosylamine-- 97.3 0.0012 2.5E-08 70.8 9.5 48 108-161 103-160 (379)
60 TIGR02068 cya_phycin_syn cyano 97.2 0.00067 1.5E-08 80.0 7.6 47 108-162 249-304 (864)
61 PRK06111 acetyl-CoA carboxylas 97.2 0.005 1.1E-07 67.4 13.9 38 108-145 153-204 (450)
62 PRK09288 purT phosphoribosylgl 97.2 0.0024 5.3E-08 68.6 11.2 38 108-145 150-199 (395)
63 PRK08654 pyruvate carboxylase 97.2 0.007 1.5E-07 67.1 15.0 40 108-147 153-206 (499)
64 PRK13277 5-formaminoimidazole- 97.2 0.0022 4.8E-08 67.0 10.3 49 107-161 152-217 (366)
65 PRK08591 acetyl-CoA carboxylas 97.2 0.0044 9.6E-08 67.9 13.1 38 108-145 153-204 (451)
66 PRK07178 pyruvate carboxylase 97.1 0.0075 1.6E-07 66.6 14.5 26 108-133 152-177 (472)
67 PLN02948 phosphoribosylaminoim 97.1 0.0036 7.8E-08 70.5 11.6 47 242-296 248-294 (577)
68 PF15632 ATPgrasp_Ter: ATP-gra 97.1 0.0058 1.3E-07 63.7 12.1 61 54-128 106-166 (329)
69 PRK02471 bifunctional glutamat 97.0 0.0022 4.9E-08 74.2 9.3 47 108-162 525-582 (752)
70 TIGR01369 CPSaseII_lrg carbamo 97.0 0.003 6.5E-08 76.3 10.1 49 108-161 705-763 (1050)
71 PRK02186 argininosuccinate lya 96.9 0.0041 9E-08 73.9 10.8 48 108-161 143-199 (887)
72 PRK05294 carB carbamoyl phosph 96.9 0.0024 5.2E-08 77.3 8.9 47 108-159 705-761 (1066)
73 PRK06395 phosphoribosylamine-- 96.8 0.0052 1.1E-07 67.0 9.4 49 241-293 246-294 (435)
74 PF05770 Ins134_P3_kin: Inosit 96.7 0.036 7.9E-07 57.1 14.1 30 268-297 263-294 (307)
75 COG0439 AccC Biotin carboxylas 96.7 0.032 7E-07 60.5 14.2 40 108-147 153-206 (449)
76 PRK05294 carB carbamoyl phosph 96.2 0.025 5.4E-07 68.6 11.2 38 108-145 164-211 (1066)
77 TIGR01369 CPSaseII_lrg carbamo 96.2 0.029 6.3E-07 67.9 11.5 38 108-145 163-210 (1050)
78 PRK05784 phosphoribosylamine-- 96.2 0.0083 1.8E-07 66.2 6.2 50 242-293 262-311 (486)
79 PLN02735 carbamoyl-phosphate s 96.0 0.015 3.2E-07 70.4 8.1 38 108-145 738-785 (1102)
80 PF01071 GARS_A: Phosphoribosy 96.0 0.017 3.6E-07 55.6 6.6 48 242-293 142-190 (194)
81 PRK12815 carB carbamoyl phosph 95.9 0.032 6.9E-07 67.6 10.3 47 107-159 705-759 (1068)
82 PLN02735 carbamoyl-phosphate s 95.9 0.037 8E-07 67.0 10.5 37 109-145 182-228 (1102)
83 TIGR02712 urea_carbox urea car 95.8 0.11 2.3E-06 63.6 13.8 39 107-145 150-202 (1201)
84 PF14403 CP_ATPgrasp_2: Circul 95.5 0.019 4E-07 62.1 5.5 66 73-147 306-386 (445)
85 cd01709 RT_like_1 RT_like_1: A 95.5 0.032 6.9E-07 57.9 6.8 81 489-572 19-110 (346)
86 KOG0369|consensus 95.5 0.078 1.7E-06 58.5 9.8 94 43-148 106-239 (1176)
87 PRK12815 carB carbamoyl phosph 95.2 0.1 2.2E-06 63.4 10.8 38 108-145 164-211 (1068)
88 COG4770 Acetyl/propionyl-CoA c 94.9 0.067 1.4E-06 58.3 7.1 42 107-148 152-207 (645)
89 PF02750 Synapsin_C: Synapsin, 94.8 0.14 3E-06 48.7 8.4 95 52-162 8-106 (203)
90 cd01646 RT_Bac_retron_I RT_Bac 94.8 0.0081 1.7E-07 56.0 0.1 66 497-564 1-67 (158)
91 COG1038 PycA Pyruvate carboxyl 94.3 0.44 9.6E-06 54.1 11.9 93 47-148 85-213 (1149)
92 PF02786 CPSase_L_D2: Carbamoy 94.1 0.56 1.2E-05 45.9 11.2 40 108-147 39-92 (211)
93 KOG0238|consensus 93.9 0.21 4.7E-06 53.7 8.3 42 107-148 148-203 (670)
94 COG2232 Predicted ATP-dependen 93.5 0.13 2.8E-06 52.6 5.5 44 107-158 149-192 (389)
95 COG2308 Uncharacterized conser 92.8 0.34 7.3E-06 51.5 7.6 125 43-185 312-457 (488)
96 KOG4768|consensus 92.5 0.24 5.3E-06 54.4 6.2 161 380-570 264-439 (796)
97 COG0151 PurD Phosphoribosylami 92.0 1.5 3.3E-05 46.8 11.2 48 240-291 240-288 (428)
98 PF02222 ATP-grasp: ATP-grasp 91.8 3.4 7.4E-05 39.1 12.5 38 108-145 29-73 (172)
99 COG0027 PurT Formate-dependent 90.7 0.96 2.1E-05 46.2 7.8 48 107-163 149-208 (394)
100 KOG2158|consensus 85.3 0.29 6.4E-06 52.1 0.4 50 265-321 12-61 (565)
101 KOG3895|consensus 83.2 3.8 8.3E-05 42.4 7.2 102 44-160 189-293 (488)
102 cd01648 TERT TERT: Telomerase 75.1 1.8 3.9E-05 38.1 1.9 33 497-564 1-33 (119)
103 COG0458 CarB Carbamoylphosphat 73.7 22 0.00047 38.0 9.6 27 107-133 150-176 (400)
104 PRK10507 bifunctional glutathi 60.7 14 0.0003 42.1 5.4 44 108-152 528-578 (619)
105 PHA02117 glutathionylspermidin 59.9 8.1 0.00017 41.6 3.3 44 109-153 309-358 (397)
106 COG0754 Gsp Glutathionylspermi 58.5 24 0.00052 37.0 6.2 40 108-147 297-343 (387)
107 KOG1005|consensus 58.0 9.3 0.0002 44.1 3.5 28 489-516 516-543 (888)
108 PF07065 D123: D123; InterPro 57.4 44 0.00096 34.6 8.1 24 270-293 216-240 (299)
109 PF04174 CP_ATPgrasp_1: A circ 56.3 8.5 0.00019 40.3 2.7 26 267-292 67-92 (330)
110 COG1759 5-formaminoimidazole-4 55.3 47 0.001 34.4 7.6 48 242-291 267-314 (361)
111 TIGR02049 gshA_ferroox glutama 54.5 50 0.0011 34.9 7.7 140 51-203 183-362 (403)
112 PF08886 GshA: Glutamate-cyste 53.9 20 0.00043 37.9 4.8 155 41-204 175-366 (404)
113 PF04174 CP_ATPgrasp_1: A circ 46.6 6.4 0.00014 41.2 -0.1 73 43-130 234-310 (330)
114 COG3919 Predicted ATP-grasp en 39.6 14 0.00031 37.6 1.1 26 270-295 265-291 (415)
115 KOG2983|consensus 37.5 1.1E+02 0.0024 30.8 6.8 22 270-291 230-251 (334)
116 PF14243 DUF4343: Domain of un 36.6 30 0.00066 31.0 2.7 25 270-294 94-118 (130)
117 PF05614 DUF782: Circovirus pr 26.2 16 0.00035 29.2 -0.8 25 539-563 5-29 (104)
118 KOG2599|consensus 25.9 2.3E+02 0.005 28.8 7.0 80 38-121 43-126 (308)
119 PF04556 DpnII: DpnII restrict 24.3 45 0.00097 34.1 1.7 23 271-293 196-218 (286)
120 KOG0782|consensus 20.1 89 0.0019 34.7 3.0 71 74-144 309-389 (1004)
No 1
>KOG2156|consensus
Probab=100.00 E-value=5.1e-63 Score=507.05 Aligned_cols=301 Identities=35% Similarity=0.627 Sum_probs=271.5
Q ss_pred CcccCCcEEecCCCCCCCCCeEEEeccCCCCchhhccCCCCceecccCCCCcccccHHHHHHHHHHHHHhCC-CCceeec
Q psy11344 1 VCVERGWREYDCNSLKDNNNWNLWWRTSGFPVSHYKQLKNNQYTNHIPKASSICRKDQLTRYLKSMKKIFGS-IYNFSPE 79 (586)
Q Consensus 1 ~~~~~gw~~~~~~~~~~~~~~~l~W~~~~~~~~~~~~l~~~q~vNh~p~~~~l~~K~~L~~~l~~~~~~~~~-~~~~~P~ 79 (586)
|+.+-||+++..+ ++|..+|+. +.+...|+.+++||+||||||+..|+|||.|++++.+++.+++. .+.|+|+
T Consensus 212 vl~~sgfkivk~n-----~dw~g~Wg~-h~ksp~fr~ir~HQkvNH~PGsF~IGRKD~lW~~~~~~~~rf~~kef~fmPr 285 (662)
T KOG2156|consen 212 VLANSGFKIVKVN-----DDWMGVWGH-HLKSPSFRAIRSHQKVNHFPGSFRIGRKDRLWRNILRNQVRFGKKEFGFMPR 285 (662)
T ss_pred HHHhcccEEeccc-----chHHHHhhh-hcCCchhhhhhhhhhhccCCCccccccchHHHHHHHHHHHHhcccccCccce
Confidence 3567799999766 789999998 45666899999999999999999999999999999999999986 8999999
Q ss_pred cccCCccHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEecCchhhhccchhhhhhhccCccccCCceeeeeE
Q psy11344 80 AYNLPLEYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLSELVYESNAVVQQYVKNPLLIGGYKFDLRL 159 (586)
Q Consensus 80 T~~lp~e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~~i~~~~~~ivQ~YI~~PlLi~g~KFDlR~ 159 (586)
||+||.|.++|.+.+.++ ....|||||.+.+||.||.++++.++++.+++.|||+||++|+||+|.|||+|+
T Consensus 286 tyilP~d~e~lrk~w~~n--------asr~wIVkppasaRg~gIrv~~kw~q~pk~rpLvvQ~yieRP~ling~KFDlrl 357 (662)
T KOG2156|consen 286 TYILPADREELRKYWEKN--------ASRLWIVKPPASARGIGIRVINKWSQFPKDRPLVVQKYIERPLLINGSKFDLRL 357 (662)
T ss_pred eeeccccHHHHHHHHhhC--------ccccEEecCcccccCcceEeccchhhCCCcccHHHHHHhhcceeecCcceeEEE
Confidence 999999999999988654 346699999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeccCcEEEEEccCeeeeecCCCCC--CCCCCCCccccccccccCCCCCCCccc-ccCCccccCHHHHHHHHHhcC
Q psy11344 160 YVCVPSFHPLTIFVYREGLARFGTDKFSL--ANLDNPFAHLTNSSLNKLGPGYGTTKE-RVGSGCKWSLSQLRQYLYQNN 236 (586)
Q Consensus 160 yvlv~s~~pl~~y~~~~g~~R~a~~~y~~--~~~~~~~~HLTN~~i~k~~~~~~~~~~-~~~~g~~~s~~~l~~~l~~~~ 236 (586)
||.|||++||+||+|++|++|||+.+|+. +++.|.+||+|||+++|.+. |..++. ..-.|.||++..+..++.++|
T Consensus 358 Yv~vts~nPLRIy~y~dgL~RFasvkYsp~~a~~~dKymhltnYs~nke~~-ys~~k~~n~~~g~kwtl~~lw~~l~~qG 436 (662)
T KOG2156|consen 358 YVVVTSVNPLRIYIYNDGLVRFASVKYSPFDANNVDKYMHLTNYSPNKESN-YSLNKYFNACQGSKWTLKSLWLYLDNQG 436 (662)
T ss_pred EEEEeecCceEEEEeccceeeeccccCCcccccccceeEEeccccccccch-hhhhhHHhhcCCchhhHHHHHHHHHhcC
Confidence 99999999999999999999999999986 57789999999999999877 654432 224789999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHhhccC--------CCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCcccccccccc
Q psy11344 237 IQDWLLWQRISSIIVLTIASELSAI--------PQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDLRLGTWNVQ 308 (586)
Q Consensus 237 ~~~~~~~~~i~~~i~~~~~~~~~~~--------~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~~d~~~~nv~ 308 (586)
.+...+|.+|+++|++++.+.+..+ .....||||+||||++|++++|||||||-+||++..+++| -
T Consensus 437 vdt~kIW~qir~iV~kti~s~E~~i~~~lr~~~~~~~~CfELfgFDiilDedLkpwLlEVNISPSLhS~tpld------~ 510 (662)
T KOG2156|consen 437 VDTDKIWEQIRNIVIKTIISGEKGINSMLRNYVENPYSCFELFGFDIILDEDLKPWLLEVNISPSLHSETPLD------C 510 (662)
T ss_pred CCHHHHHHHHHHHHHHHhhccChhHHHHHHHHhcCCchhhhhhcceEEecCccceeeEEEecccccccCCCcc------c
Confidence 9999999999999999999987654 3467899999999999999999999999999999999999 7
Q ss_pred ccccCCcccccccc
Q psy11344 309 TLHKPGAFDNLIME 322 (586)
Q Consensus 309 ~~k~~~~~d~l~~~ 322 (586)
.+|.+.+-++|++.
T Consensus 511 ~vk~~li~~vlNla 524 (662)
T KOG2156|consen 511 SVKAPLIQDVLNLA 524 (662)
T ss_pred hhhhHHHHHHHHhc
Confidence 88888666665543
No 2
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=100.00 E-value=1e-60 Score=492.02 Aligned_cols=267 Identities=39% Similarity=0.730 Sum_probs=148.6
Q ss_pred CCCceecccCCCCcccccHHHHHHHHHHHHHhCCCCceeeccccCCccHHHHHHHHHHhhcccCCCCCCceEEEcCCCCC
Q psy11344 39 KNNQYTNHIPKASSICRKDQLTRYLKSMKKIFGSIYNFSPEAYNLPLEYTKLVAECSRQARNSTYENPDNVWICKPVGQS 118 (586)
Q Consensus 39 ~~~q~vNh~p~~~~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~lp~e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs 118 (586)
.++|+||||||++.|++|+.|+++++++.+..+..++|+|+||.||.++.+|...+.+. ..+.||+||++++
T Consensus 5 ~~~q~vN~~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~p~t~~l~~~~~~~~~~~~~~--------~~~~wI~KP~~~~ 76 (292)
T PF03133_consen 5 KPFQKVNHFPGSQELTRKDLLAKNLQRYRKKFPKEFDFYPETFILPQDYKEFLKYFEKN--------PKNLWIVKPSNGS 76 (292)
T ss_dssp CHHTT-TSS--EEEE-----------------------------HHHHHHHHHHHHHTT--------S---EEEEES---
T ss_pred CCCeeEccCCCCchhhhhHHHHHHHHHHHhhcCCcccCCcceEecHHHHHHHHHHHhcC--------CCCEEEEeccccC
Confidence 46899999999999999999999999999988888999999999999999998887654 2389999999999
Q ss_pred CCCceEEecCchhhh-----ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCeeeeecCCCC--CCCC
Q psy11344 119 QGRGILLFQRLSELV-----YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLARFGTDKFS--LANL 191 (586)
Q Consensus 119 ~G~GI~l~~~~~~i~-----~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~R~a~~~y~--~~~~ 191 (586)
+|+||.++++++++. ...++|||+||+||+|++|||||||+||+|+|++||++|+|++|++|+|+++|+ ..++
T Consensus 77 rG~GI~l~~~~~~i~~~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts~~pl~vy~y~~g~vR~~~~~Y~~~~~~~ 156 (292)
T PF03133_consen 77 RGRGIKLFNNLEQILRFSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTSLNPLRVYLYKEGYVRFASEPYDPDLDDL 156 (292)
T ss_dssp ----EEEES-HHHHHCCHCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T--T--EEEES--EEEE-SS---------
T ss_pred CCCCceecCCHHHHHHHhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEeeccceeeeeccCceEEeccceeecccccc
Confidence 999999999999988 568999999999999999999999999999999999999999999999999999 6888
Q ss_pred CCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh-----hccCCCCCC
Q psy11344 192 DNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASE-----LSAIPQTKN 266 (586)
Q Consensus 192 ~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~-----~~~~~~~~~ 266 (586)
.+.++||||+++||.... .........|++|++..+.+++.. |.+...+|++|..++..++.++ ........+
T Consensus 157 ~~~~~HlTN~~i~k~~~~-~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 234 (292)
T PF03133_consen 157 SDRFAHLTNYSIQKKSES-NEEDSNEENGNKWSLDQFEEYLKE-GIDWEKIWEKICDIIIKTILAAEFRSSQPNMPPRPN 234 (292)
T ss_dssp ----------------------------EEEHHHHHHHCTTTS-SS-STTTCHHHHHHHHHHHHHH-HHHHH--TTSSSE
T ss_pred cccccccccccccccccc-ccccccccccccchhhhhhhhccc-CCCcccchhhhhHHHHHHhhhhhhhhcccccccccc
Confidence 999999999999998541 111222346789999999999988 7777789999999999888877 345567889
Q ss_pred cceEEeeeeeecCCCCeEEEcccCCCCCCCCCccccccccccccccCCccccccc
Q psy11344 267 CFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDLRLGTWNVQTLHKPGAFDNLIM 321 (586)
Q Consensus 267 ~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~~d~~~~nv~~~k~~~~~d~l~~ 321 (586)
|||+||+|||||++++|||||||++|+|+.+++.+ ..++.+.+-|++.+
T Consensus 235 ~Fel~G~DfmlD~~~kpwLLEvN~~Psl~~~~~~~------~~~~~~li~d~l~i 283 (292)
T PF03133_consen 235 CFELFGFDFMLDEDLKPWLLEVNSNPSLSTSTPVD------KELKPQLIDDLLKI 283 (292)
T ss_dssp E-EEEEEEEEEBTTS-EEEEEEESS------TTTH------HHHHHHHHHHTTTT
T ss_pred ccceeeeEEEecCCCeEEEeeCCCCCCcccCCHhH------HHHHHHHHHHHhEE
Confidence 99999999999999999999999999999999998 88888766666554
No 3
>KOG2157|consensus
Probab=100.00 E-value=4e-53 Score=449.52 Aligned_cols=305 Identities=35% Similarity=0.631 Sum_probs=268.7
Q ss_pred cccCCcEEecCCCCCCCCCeEEEeccCCCCchhhccCCCC-ceecccCCCCcccccHHHHHHHHHHHHHhCC--------
Q psy11344 2 CVERGWREYDCNSLKDNNNWNLWWRTSGFPVSHYKQLKNN-QYTNHIPKASSICRKDQLTRYLKSMKKIFGS-------- 72 (586)
Q Consensus 2 ~~~~gw~~~~~~~~~~~~~~~l~W~~~~~~~~~~~~l~~~-q~vNh~p~~~~l~~K~~L~~~l~~~~~~~~~-------- 72 (586)
+.++||.+++... .+|+|+|+........+..+.|+ |++||||+..+|+||+.|++++++|+..++.
T Consensus 92 ~~~~G~l~~~~~~----~~~~f~w~~~~~~~~~~~~~~p~~~~~~~~p~~~~L~rkd~l~~~i~r~~~~~e~~~~~~~~~ 167 (497)
T KOG2157|consen 92 LNREGWLQFTESA----EDWNFYWRGYEGIDFDFSWLAPYNQVVNHFPRRKELTRKDLLMKLIKRYLALLERSRLPKAQL 167 (497)
T ss_pred Hhhcceeeecccc----cceEEEEeccccccHHHhhhcchhhhhhccccHHHhhhhHHhhhhHHHHHHhccccccchhhc
Confidence 4556999999753 68999999865444456667787 9999999999999999999999999998875
Q ss_pred ----CCceeeccccCCccHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEecCchhhh-------------cc
Q psy11344 73 ----IYNFSPEAYNLPLEYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLSELV-------------YE 135 (586)
Q Consensus 73 ----~~~~~P~T~~lp~e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~~i~-------------~~ 135 (586)
..+|.|.|+.+|.++..+..++.+. ...+.||+||++.++|+||+++++++++. ..
T Consensus 168 ~~~~~ld~~~~~~~~~~~~~~~v~e~~~~-------~~~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~ 240 (497)
T KOG2157|consen 168 EDYILLDYVETTFVLLDEYKKLVEEYEED-------SERSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSFISENND 240 (497)
T ss_pred ccceeecccchhhhhhhHHHHHHHHHHhc-------cccceEEeccccccccceeEEecchhhhhhhhhccccccccccc
Confidence 3799999999999999999998653 45799999999999999999999887743 35
Q ss_pred chhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCeeeeecCCCC-CCCCCCCCccccccccccCCCCCCCcc
Q psy11344 136 SNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLARFGTDKFS-LANLDNPFAHLTNSSLNKLGPGYGTTK 214 (586)
Q Consensus 136 ~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~R~a~~~y~-~~~~~~~~~HLTN~~i~k~~~~~~~~~ 214 (586)
..++||+||++|+||+|+|||||.||+|++++|+.+|.|++|++|||+++|. ..|++|.++||||++|||+.++|....
T Consensus 241 ~~~vv~~yi~~plli~~~KfDlR~~vlvt~~~pl~~y~yreg~lRf~t~~y~~~~nl~n~~~HLtN~siqK~~~~~~~~~ 320 (497)
T KOG2157|consen 241 EGYVVSAYIDRPLLIGGHKFDLRQYVLVTHFDPLLLYRYREGFLRFSTEPYGPLVNLQNMSVHLTNVSIQKLYPNYCHLS 320 (497)
T ss_pred ccceeeeeccCccccCCceeeeeEEEEeecccchhheeeccceEEEEeccCcchhhhcccchhhhccccccCCCCccccc
Confidence 6899999999999999999999999999999999999999999999999999 899999999999999999999999887
Q ss_pred cccCCccccCHHHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHhhccCCCCCCcceEEeeeeeecCCCCeEEEcccCC
Q psy11344 215 ERVGSGCKWSLSQLRQYLYQNNIQD---WLLWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPD 291 (586)
Q Consensus 215 ~~~~~g~~~s~~~l~~~l~~~~~~~---~~~~~~i~~~i~~~~~~~~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~ 291 (586)
+....|++|++..|..|++..+... ...+..|...|+.++.+++..++...+|||+||+|||+|++++|||||||++
T Consensus 321 s~~~~~~~w~~~~~~~yl~~~~~~~~~~~~~i~~~~~~iv~~v~~s~~~~~~~~n~FElyG~DfliD~~lkpwLiEiNss 400 (497)
T KOG2157|consen 321 SLLSESCKWTLNSLLLYLRNIGSPCLELKLQIKPIITGIVLSVFASATTVPSLANCFELYGFDFLIDEALKPWLIEINAS 400 (497)
T ss_pred ccccCCCcccHHHHHHHHHhhcCCcccccccchhhhhhhhhhhhhhccccccccchhhhhCcceeecCCCCeEEEEeecC
Confidence 7767899999999999999865443 2346677777777787888888888999999999999999999999999999
Q ss_pred CCCCCCCccccccccccccccCCccccccccc
Q psy11344 292 TAPGTNKDLRLGTWNVQTLHKPGAFDNLIMEA 323 (586)
Q Consensus 292 P~l~~~~~~d~~~~nv~~~k~~~~~d~l~~~~ 323 (586)
|+|+.++..| ..++..++-|.+....
T Consensus 401 P~~~~t~~~d------~~l~~~l~~d~l~~v~ 426 (497)
T KOG2157|consen 401 PDLTQTTKND------ARLKSKLIDDVLKVVV 426 (497)
T ss_pred Ccccccchhh------hHHHHHHHHHhhcccc
Confidence 9999999999 8888887777777643
No 4
>KOG2158|consensus
Probab=100.00 E-value=3.8e-47 Score=385.88 Aligned_cols=270 Identities=33% Similarity=0.477 Sum_probs=238.6
Q ss_pred CCeEEEeccCCCCchhhccCCCCceecccCCCCcccccHHHHHHHHHHHHHhCCCCceeeccccCCccHHHHHHHHHHhh
Q psy11344 19 NNWNLWWRTSGFPVSHYKQLKNNQYTNHIPKASSICRKDQLTRYLKSMKKIFGSIYNFSPEAYNLPLEYTKLVAECSRQA 98 (586)
Q Consensus 19 ~~~~l~W~~~~~~~~~~~~l~~~q~vNh~p~~~~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~lp~e~~~~~~~~~~~~ 98 (586)
..|.+.|...--.....+... +|++|||||+.+++ |+.|. |.+|++.|++.|.|+|.+|.||.++..|.+.....
T Consensus 151 ~~~~~l~~v~f~~~~~~~~~~-fqrvn~fPgm~e~~-kd~Ls--l~~mqkifpeey~fyp~sw~lPa~l~df~a~~~~~- 225 (565)
T KOG2158|consen 151 EKYENLLAVAFQTFLSGRAAS-FQRENNFPGMREKE-KDILD--LLEMQKIFPEEYMFYPTSWRLPAPLCDFPASTEIM- 225 (565)
T ss_pred hhhhhHHHHhhchhhhccchh-hhhhhcCchHHHHH-HHHHh--HHHHHhcChHHhcCCCccccCchHHHHHHHHHHHh-
Confidence 567777765321222334444 89999999999999 99999 99999999999999999999999999998877543
Q ss_pred cccCCCCCCceEEEcCCCCCCCCceEEecCchhhhccchhhhhhhccCcccc-CCceeeeeEEEEEeeccCcEEEEEccC
Q psy11344 99 RNSTYENPDNVWICKPVGQSQGRGILLFQRLSELVYESNAVVQQYVKNPLLI-GGYKFDLRLYVCVPSFHPLTIFVYREG 177 (586)
Q Consensus 99 ~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~~i~~~~~~ivQ~YI~~PlLi-~g~KFDlR~yvlv~s~~pl~~y~~~~g 177 (586)
..++|+||..|++|.||.+++.+..+......++|+||..|||+ |++|||+|+|++++|++||++|++++|
T Consensus 226 --------KrtfivkpDsgaqg~giylisDir~~g~~Q~~~vQeyV~~pLli~dkyKfd~rvy~likSvdPlsIfva~eG 297 (565)
T KOG2158|consen 226 --------KRTFIVKPDSGAQGSGIYLISDIREKGEYQNKKVQEYVTYPLLISDKYKFDQRVYSLIKSVDPLSIFVASEG 297 (565)
T ss_pred --------cccEEECCCCCCCCcceeeechhhhhhHHHHHHHHHHhcccccccccceeeeeeeeeeeccCcceEEEeccc
Confidence 35999999999999999999887777766779999999999999 999999999999999999999999999
Q ss_pred eeeeecCCCC---CCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q psy11344 178 LARFGTDKFS---LANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTI 254 (586)
Q Consensus 178 ~~R~a~~~y~---~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~ 254 (586)
++|||+++|. ..|.++.+||||||++|+.+.+|.........|+++.++.....++..|++...+|.+|+.++++|+
T Consensus 298 laRFcTeky~ePts~n~~~lymhlTnYslnk~nsny~hsd~sq~~gSkR~Lsti~~ql~s~gvdtk~vwsDik~v~iktv 377 (565)
T KOG2158|consen 298 LARFCTEKYIEPTSANRSHLYMHLTNYSLNKPNSNYAHSDNSQVSGSKRQLSTINEQLDSLGVDTKFVWSDIKIVFIKTV 377 (565)
T ss_pred hhhhhhccccCCCcccHHHHHHHHHHhhhcCCCccccccCcccccchhHHHHHHHHHHHhcCchHHHHHhhhhhhhcchh
Confidence 9999999996 4588889999999999999999998765556899999999999999999999999999999999999
Q ss_pred HHhhccC--------C---CCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCccc
Q psy11344 255 ASELSAI--------P---QTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDLR 301 (586)
Q Consensus 255 ~~~~~~~--------~---~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~~d 301 (586)
+|..+.+ + ....||+++|||++++.++.|.|+|||..|++.....+|
T Consensus 378 lA~~peLk~~y~~~fp~h~tgpacfqi~gfDi~~~~k~~pillevnrapslr~~~~vd 435 (565)
T KOG2158|consen 378 LAESPELKEDYIDNFPYHKTGPACFQIIGFDIVKQRKVLPILLEVNRAPSLRIWKVVD 435 (565)
T ss_pred hhcCHHHHHHHHHhCCCCCcCCceEEEeccchhhccccchHHHHhcccccccccccCC
Confidence 9876432 2 357899999999999999999999999999999888888
No 5
>KOG2155|consensus
Probab=99.97 E-value=3.1e-31 Score=267.89 Aligned_cols=260 Identities=23% Similarity=0.338 Sum_probs=208.4
Q ss_pred CCeEEEeccCCCCchhhccC---CCCceecccCCCCcccccHHHHHHHHHHHHHhCCCCceeeccccCCccHHHHHHHHH
Q psy11344 19 NNWNLWWRTSGFPVSHYKQL---KNNQYTNHIPKASSICRKDQLTRYLKSMKKIFGSIYNFSPEAYNLPLEYTKLVAECS 95 (586)
Q Consensus 19 ~~~~l~W~~~~~~~~~~~~l---~~~q~vNh~p~~~~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~lp~e~~~~~~~~~ 95 (586)
.+.|++|+..++ ++|+++ .|.|.+|+||....|+-||.|+...++ .+...+|+|.||.|..++.+|+++|.
T Consensus 331 kdADilw~~~hf--~Dykkls~e~p~~~iNQFPfE~cltvKd~LA~~a~r----~~g~~~Wlq~TyNL~TqLpqFv~~fq 404 (631)
T KOG2155|consen 331 KDADILWMIKHF--HDYKKLSEENPCGMINQFPFESCLTVKDLLAACAMR----DPGKNDWLQLTYNLNTQLPQFVARFQ 404 (631)
T ss_pred cccceeeehhhH--HHHHHHhccCCcceeccCchHHHHHHHHHHHHHHhh----cCCCCcccccccccccchHHHHHHHH
Confidence 689999998755 347765 699999999999999999999998653 34556799999999999999999997
Q ss_pred HhhcccCCCCCCceEEEcCCCCCCCCceEEecCchhhh---ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEE
Q psy11344 96 RQARNSTYENPDNVWICKPVGQSQGRGILLFQRLSELV---YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIF 172 (586)
Q Consensus 96 ~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~~i~---~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y 172 (586)
.+++ .+..|+||+||.+.+||....+..++++|. ..++.|||+||++|+|..|-|||||..|++.|+.||++|
T Consensus 405 ~Rer----~g~~N~WI~KPWNlAR~~Dt~vT~~L~~IIRm~EtgPKiv~kYIe~P~LFr~gKFDlRYiVllrsi~Pl~~y 480 (631)
T KOG2155|consen 405 NRER----NGQHNVWIVKPWNLARGMDTTVTEDLNQIIRMIETGPKIVCKYIERPLLFRNGKFDLRYIVLLRSIAPLTAY 480 (631)
T ss_pred HHHh----cCcCceEEechhhhhhcccchhhhhHHHHHHHHhcCchHHHHhcCCcceeecCccceEEEEEEccccchhhh
Confidence 6655 467899999999999999999999999875 578999999999999997779999999999999999999
Q ss_pred EEccCeeeeecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCC--chhHHHHHHHHHH
Q psy11344 173 VYREGLARFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNI--QDWLLWQRISSII 250 (586)
Q Consensus 173 ~~~~g~~R~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~--~~~~~~~~i~~~i 250 (586)
+|.-.++||+..+|+++|+.+...|.|-... ...- .....+.|..-+++... ....+-.+|..++
T Consensus 481 vy~~FWiRfsnn~fsL~~f~dyEtHFTVmNY-------~~kl------~q~~ceeFi~~~ek~yp~~pw~dvq~~i~~ai 547 (631)
T KOG2155|consen 481 VYNRFWIRFSNNEFSLSNFEDYETHFTVMNY-------LEKL------LQMKCEEFIGEFEKGYPCFPWEDVQCSIVPAI 547 (631)
T ss_pred heeheeeeecCCccchhhhhhhhhhhhhhhH-------HHHH------hhccHHHHHHHHhhcCCCCCcchhhhHHHHHH
Confidence 9999999999999999999999999997652 2110 11133444444444321 1123445555556
Q ss_pred HHHHHHhhccCC-----CCCCcceEEeeeeee--cCC--CCeEEEcccCCCCCCCCCccc
Q psy11344 251 VLTIASELSAIP-----QTKNCFEFFGFDILV--DSS--LNPWLLESQPDTAPGTNKDLR 301 (586)
Q Consensus 251 ~~~~~~~~~~~~-----~~~~~Fel~G~D~li--D~~--~kpwLlEVN~~P~l~~~~~~d 301 (586)
.+.+.+++..-+ ..++.-.+||+|+|+ |.+ .+|-|||||.+|.....|..+
T Consensus 548 re~~eaaak~~~e~g~a~~p~sramygvDlml~~~~~pVmq~qILEVNFnPDc~RACrYh 607 (631)
T KOG2155|consen 548 REPFEAAAKLNPECGAALLPNSRAMYGVDLMLAGDLTPVMQPQILEVNFNPDCKRACRYH 607 (631)
T ss_pred HHHHhhhhccCCcccccCCchhhhhhhheeeeccCCCccccceeEEEecCcchHHHhhcC
Confidence 655555543322 245667789999999 777 899999999999999999877
No 6
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.90 E-value=2.7e-23 Score=209.75 Aligned_cols=196 Identities=16% Similarity=0.186 Sum_probs=147.2
Q ss_pred cccccHHHHHHHHHHHHHhCCCCceeeccccCCc--cHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEecCc
Q psy11344 52 SICRKDQLTRYLKSMKKIFGSIYNFSPEAYNLPL--EYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRL 129 (586)
Q Consensus 52 ~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~lp~--e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~ 129 (586)
.+.+|..+++.|. ..+...+|+|+|..+.. ++.+|++.+ +..++||..|++|+||..+...
T Consensus 15 ~~~~Kw~v~~~L~----~~~~l~~~LP~T~~~~~~~~l~~~L~~y-------------~~vylKP~~Gs~G~gI~ri~~~ 77 (262)
T PF14398_consen 15 GFFDKWEVYKALS----RDPELRPYLPETELLTSFEDLREMLNKY-------------KSVYLKPDNGSKGKGIIRIEKK 77 (262)
T ss_pred CCCCHHHHHHHHH----cCCcchhhCCCceEcCCHHHHHHHHHHC-------------CEEEEEeCCCCCCccEEEEEEe
Confidence 4579999999876 35677899999988853 566666655 7899999999999999998654
Q ss_pred hhh-----------------------------hccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCeee
Q psy11344 130 SEL-----------------------------VYESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLAR 180 (586)
Q Consensus 130 ~~i-----------------------------~~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~R 180 (586)
..- ...+.||||++|+ -..++|++||+|+.|+... ...|...+..+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~-l~~~~gr~fD~RvlvqK~~---~G~W~vtg~~~R 153 (262)
T PF14398_consen 78 GGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIP-LATYDGRPFDFRVLVQKNG---SGKWQVTGIVAR 153 (262)
T ss_pred CCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCcc-ccccCCCeEEEEEEEEECC---CCCEEEEEEEEE
Confidence 320 0246899999996 4567999999999999874 447999999999
Q ss_pred eecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhcc
Q psy11344 181 FGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELSA 260 (586)
Q Consensus 181 ~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~~~ 260 (586)
+|..+ .-+||.+ .+|..+++..+.... .....+.++|.+++..+..+....
T Consensus 154 va~~~----------~ivTN~~---------------~GG~~~~~~~~l~~~----~~~~~~~~~l~~~a~~ia~~le~~ 204 (262)
T PF14398_consen 154 VAKPG----------SIVTNLS---------------QGGTALPFEEVLRQS----EEAEKIREELEDLALEIAQALEKH 204 (262)
T ss_pred EcCCC----------CceeccC---------------CCceecCHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99886 3456665 245555655544433 113456677777777666666655
Q ss_pred CCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCcc
Q psy11344 261 IPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDL 300 (586)
Q Consensus 261 ~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~~ 300 (586)
++.. |.++|+||+||.+|++||||||+.|+-......
T Consensus 205 ~~~~---~gElGiDl~iD~~g~iWliEvN~kP~~~~~~~~ 241 (262)
T PF14398_consen 205 FGGH---LGELGIDLGIDKNGKIWLIEVNSKPGKFDFRDI 241 (262)
T ss_pred cCCc---eeEEEEEEEEcCCCCEEEEEEeCCCCcchhhcc
Confidence 5421 667999999999999999999999997665543
No 7
>cd01650 RT_nLTR_like RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities.
Probab=99.13 E-value=7.6e-11 Score=115.96 Aligned_cols=114 Identities=17% Similarity=0.004 Sum_probs=92.5
Q ss_pred eeeecCCCC-CCCC-CCCcCCCchhHHhhccccCCCceeeecCCCCCCCCC-----ch-hhHHHHHHHHHHHHHcCCeEe
Q psy11344 422 KPLFHNTAR-TFRS-SKQSNKWGNGKDWSKIEPNEGNWTRIYPYTYPDQTD-----NV-DSDKALRNIAFNVAKFNKLSK 493 (586)
Q Consensus 422 ~~I~K~k~~-~~~~-RPIsll~~i~Ki~~kii~~~r~~~~i~~~~~~~q~~-----s~-~~i~~l~~~i~~~~~~~~~~~ 493 (586)
++|||++++ ..++ |||++++..+|++++++. .++...+.....+.|.+ ++ +++..+.+.++...+.+...+
T Consensus 5 ~~ipK~~~~~~~~~~RpI~~~~~~~k~~~~~i~-~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (220)
T cd01650 5 ILIPKKGKPSDPKNYRPISLLSVLYKLLEKILA-NRLRPVLEENILPNQFGFRPGRSTTDAILLLREVIEKAKEKKKSLV 83 (220)
T ss_pred EEeeCCCCCCCccCcCCchhhhHHHHHHHHHHH-HHHHHHHhhcCCcccccccCCChHHHHHHHHHHHHHHHHHcCCceE
Confidence 678887665 3466 999999999999999985 66666666665555554 33 448888888888888889999
Q ss_pred EEEEEccccCCccchHHHHHHHccccccCcchhhhcccccCceecCCCcCcccccCCCccccchhhHHHHH--HHhhhh
Q psy11344 494 EIFRKNEKQCDDELNFLLQTSLGMKTEVNLSPALANDCEVDPAVKKPMLHDMFDLLGLPVCNTGLSLFTLW--TSLAQR 570 (586)
Q Consensus 494 ~v~lD~~KAFD~V~~~~L~~~L~~~G~~~~~~~l~~~~~~~~~V~~g~~s~~f~~~g~~~~~~~~~~~~~~--~~~~~~ 570 (586)
++++|++||||+|+|+.|+++| |+||++...|.++.+ .++.++
T Consensus 84 ~l~~Di~~aFdsi~~~~l~~~l----------------------------------GipQG~~lSp~l~~l~~~~l~~~ 128 (220)
T cd01650 84 LVFLDFEKAFDSVDHEFLLKAL----------------------------------GVRQGDPLSPLLFNLALDDLLRL 128 (220)
T ss_pred EEEEEHHhhcCcCCHHHHHHHh----------------------------------CCccCCcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999988877 555544
No 8
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=98.93 E-value=1.8e-09 Score=104.23 Aligned_cols=147 Identities=27% Similarity=0.389 Sum_probs=65.8
Q ss_pred eeccccCCc--cHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEecCchhhhc--------cchhhhhhhccC
Q psy11344 77 SPEAYNLPL--EYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLSELVY--------ESNAVVQQYVKN 146 (586)
Q Consensus 77 ~P~T~~lp~--e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~~i~~--------~~~~ivQ~YI~~ 146 (586)
+|+|+.... +..++++.+. ....|+||..|+.|+|+.++++.+++.. ..+.++|+||+.
T Consensus 18 vP~t~~~~~~~~~~~~~~~~~-----------~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~~~~~~~Q~fI~~ 86 (190)
T PF08443_consen 18 VPETRVTNSPEEAKEFIEELG-----------GFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKRLENPILVQEFIPK 86 (190)
T ss_dssp ---EEEESSHHHHHHHHHHH-------------SSEEEE-SB-------EEEESHCHHHHHHH-----TTT-EEEE----
T ss_pred CCCEEEECCHHHHHHHHHHhc-----------CCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhccCcceEeccccC
Confidence 699987743 4555665552 2568999999999999999998776542 367899999974
Q ss_pred ccccCCceeeeeEEEEEeeccCcEEEEEccCeeeeecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHH
Q psy11344 147 PLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLARFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLS 226 (586)
Q Consensus 147 PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~R~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~ 226 (586)
+ +| -|+|+||+=. ++. .++.|.++.. + ..+|.+ .|.+..
T Consensus 87 ~---~g--~d~Rv~Vig~-----~vv---~a~~r~~~~~----d------~r~n~~----------------~g~~~~-- 125 (190)
T PF08443_consen 87 D---GG--RDLRVYVIGG-----KVV---GAYRRSSPEG----D------FRTNLS----------------RGGKVE-- 125 (190)
T ss_dssp S---S-----EEEEEETT-----EEE---EEEE--------------------------------------------E--
T ss_pred C---CC--cEEEEEEECC-----EEE---EEEEEecCcc----c------chhhhc----------------cCceEE--
Confidence 2 11 5999999721 111 1123333321 1 123332 111100
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCC
Q psy11344 227 QLRQYLYQNNIQDWLLWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTN 297 (586)
Q Consensus 227 ~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~ 297 (586)
...+.+++.+++.+++.+.. ..+.|+| +++.++++|++|||.+|++...
T Consensus 126 ------------~~~l~~e~~~~a~~~~~~lg---------l~~~giD-i~~~~~~~~v~EvN~~~~~~~~ 174 (190)
T PF08443_consen 126 ------------PYDLPEEIKELALKAARALG---------LDFAGID-ILDTNDGPYVLEVNPNPGFRGI 174 (190)
T ss_dssp ------------E----HHHHHHHHHHHHHTT----------SEEEEE-EEEETTEEEEEEEETT---TTH
T ss_pred ------------EecCCHHHHHHHHHHHHHhC---------CCEEEEE-EEecCCCeEEEEecCCchHhHH
Confidence 11233556666555444332 3468999 5666678999999999998753
No 9
>cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements, which lack long terminal repeats (LTRs).
Probab=98.92 E-value=1.2e-09 Score=107.63 Aligned_cols=131 Identities=10% Similarity=-0.161 Sum_probs=85.9
Q ss_pred eeeecCCCCCCCC-CCCcCCCchhHHhhccccCCCceeeecCCCCCCCCC-----chhh-HHHHHHHHHHHHHcCCeEeE
Q psy11344 422 KPLFHNTARTFRS-SKQSNKWGNGKDWSKIEPNEGNWTRIYPYTYPDQTD-----NVDS-DKALRNIAFNVAKFNKLSKE 494 (586)
Q Consensus 422 ~~I~K~k~~~~~~-RPIsll~~i~Ki~~kii~~~r~~~~i~~~~~~~q~~-----s~~~-i~~l~~~i~~~~~~~~~~~~ 494 (586)
+.|||+++ . |||+++++..|++++++. .++...+.......|.| ++.+ +..++.. ......++
T Consensus 3 ~~i~K~~g----~~RpI~~~~~~~ki~~~~i~-~~L~~~~~~~~~~~~~g~~~~rs~~~~i~~i~~~-----~~~~~~~~ 72 (226)
T cd01651 3 VYIPKPNG----KKRPLGIPTVRDRIVQEALK-LVLEPIYEPRFSDCSYGFRPGRSAHDALKAIRRN-----VKGGYTWV 72 (226)
T ss_pred eeecCCCC----CCCccCCCchHHHHHHHHHH-HHHHHHHhhccccCCCCCCCCCCHHHHHHHHHHH-----hcCCCeEE
Confidence 45677654 6 999999999999999985 45444445445555554 3333 3333332 34567889
Q ss_pred EEEEccccCCccchHHHHHHHccccccCcchhhhcccccCceecCCCcCcccccCCCccccchhhHHHHH
Q psy11344 495 IFRKNEKQCDDELNFLLQTSLGMKTEVNLSPALANDCEVDPAVKKPMLHDMFDLLGLPVCNTGLSLFTLW 564 (586)
Q Consensus 495 v~lD~~KAFD~V~~~~L~~~L~~~G~~~~~~~l~~~~~~~~~V~~g~~s~~f~~~g~~~~~~~~~~~~~~ 564 (586)
+.+|+++|||+|+|+.|++.|+..|.......+...........++ .......|+||++...|+++-+
T Consensus 73 ~~~Di~~~Fdsi~~~~l~~~l~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~GlpqG~~lSp~L~~~ 140 (226)
T cd01651 73 IEGDIKGFFDNIDHDLLLKILKRRIGDKRVLRLIRKWLKAGVLEDG--KLVETEKGTPQGGVISPLLANI 140 (226)
T ss_pred EEccHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHHHhceEccCC--eEeCCCCCcCCCccHHHHHHHH
Confidence 9999999999999999999999998332222222221110011111 2224468999999999988766
No 10
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=3.5e-08 Score=102.35 Aligned_cols=150 Identities=21% Similarity=0.209 Sum_probs=96.1
Q ss_pred ceeeccccCCc--cHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEecCch-hhh-------c--cchhhhhh
Q psy11344 75 NFSPEAYNLPL--EYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLS-ELV-------Y--ESNAVVQQ 142 (586)
Q Consensus 75 ~~~P~T~~lp~--e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~-~i~-------~--~~~~ivQ~ 142 (586)
-.+|+|.+.-+ +...+.++. .+...|+||..|+.|+||+++++.+ ++. . ...++||+
T Consensus 132 ipvP~T~i~~~~~~~~~~~~~~-----------~g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQe 200 (318)
T COG0189 132 IPVPPTLITRDPDEAAEFVAEH-----------LGFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQEGRKLIIVQE 200 (318)
T ss_pred CCCCCEEEEcCHHHHHHHHHHh-----------cCCCEEEeeCCCCCccceEEecCCChhHHHHHHHHhccccceEehhh
Confidence 36799988855 455555443 2367899999999999999999988 543 1 23599999
Q ss_pred hccCccccCCceeeeeEEEEEeeccCcEEEEEccCeeeeecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccc
Q psy11344 143 YVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLARFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCK 222 (586)
Q Consensus 143 YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~R~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~ 222 (586)
||..| +=|.|.++++.. -|...| ++.|.+...= .-||.+.....
T Consensus 201 yi~~~------~~~~rrivv~~~-~~~~~y----~~~R~~~~~~----------~R~N~a~Gg~~--------------- 244 (318)
T COG0189 201 YIPKA------KRDDRRVLVGGG-EVVAIY----ALARIPASGD----------FRSNLARGGRA--------------- 244 (318)
T ss_pred hcCcc------cCCcEEEEEeCC-EEeEEe----eeccccCCCC----------ceeeccccccc---------------
Confidence 99865 236666666652 233333 6677664431 12454422110
Q ss_pred cCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCC
Q psy11344 223 WSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGT 296 (586)
Q Consensus 223 ~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~ 296 (586)
.. ..+-+++++++.++..+. ...++|+||+.+ +...+++|||.+|..-.
T Consensus 245 -e~--------------~~l~~e~~elA~kaa~~l---------Gl~~~GVDiie~-~~g~~V~EVN~sP~~~~ 293 (318)
T COG0189 245 -EP--------------CELTEEEEELAVKAAPAL---------GLGLVGVDIIED-KDGLYVTEVNVSPTGKG 293 (318)
T ss_pred -cc--------------cCCCHHHHHHHHHHHHHh---------CCeEEEEEEEec-CCCcEEEEEeCCCcccc
Confidence 00 012245555555544433 245799999999 77889999999997755
No 11
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=98.79 E-value=2.2e-08 Score=103.01 Aligned_cols=46 Identities=17% Similarity=0.375 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCC
Q psy11344 241 LLWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPG 295 (586)
Q Consensus 241 ~~~~~i~~~i~~~~~~~~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~ 295 (586)
..|+++.+++.++..+ .+| ..+|+||++|.++.||+||||+.|++.
T Consensus 228 p~~~el~~la~~A~~~--------~g~-~~~GvDii~~~~~g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 228 PHWERLLELAASCWEL--------TGL-GYMGVDMVLDKEEGPLVLELNARPGLA 273 (317)
T ss_pred hhHHHHHHHHHHHHHh--------cCC-CeEEEEEEEeCCCCEEEEEeCCCCCCC
Confidence 3577777765554432 224 579999999989999999999999997
No 12
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=98.77 E-value=5.6e-08 Score=100.70 Aligned_cols=111 Identities=12% Similarity=0.079 Sum_probs=74.7
Q ss_pred CceecccCCCCcccccHHHHHHHHHHHHHhCCCCceeeccccCCccHHHHHHHHHHhhcccCCCCCCceEEEcCCCC---
Q psy11344 41 NQYTNHIPKASSICRKDQLTRYLKSMKKIFGSIYNFSPEAYNLPLEYTKLVAECSRQARNSTYENPDNVWICKPVGQ--- 117 (586)
Q Consensus 41 ~q~vNh~p~~~~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~lp~e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~g--- 117 (586)
--.||.......+.+|..+...|.+.........--.|+|+.+.+...++.. ..+. .+-.-..|+||..|
T Consensus 93 v~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~-~~~~------~~l~~P~V~KPl~g~Gs 165 (328)
T PLN02941 93 VTVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPD-AVAL------AGLKFPLVAKPLVADGS 165 (328)
T ss_pred cEEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHH-HHHH------hcCCCCEEEeecccCCC
Confidence 3466777777777888877777765422111222368999988664322211 1111 12234689999999
Q ss_pred CCCCceEEecCchhhhc-cchhhhhhhccCccccCCceeeeeEEEEEe
Q psy11344 118 SQGRGILLFQRLSELVY-ESNAVVQQYVKNPLLIGGYKFDLRLYVCVP 164 (586)
Q Consensus 118 s~G~GI~l~~~~~~i~~-~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~ 164 (586)
+.|+|+.++.+.+.+.. ..++++|+||+.| -.|+|+||+=.
T Consensus 166 s~gh~m~lv~~~~~L~~l~~p~~lQEfVnh~------g~d~RVfVvGd 207 (328)
T PLN02941 166 AKSHKMSLAYDQEGLSKLEPPLVLQEFVNHG------GVLFKVYVVGD 207 (328)
T ss_pred ccccceEEecCHHHHHhcCCcEEEEEecCCC------CEEEEEEEECC
Confidence 99999999998877653 3479999999865 46999999833
No 13
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=98.76 E-value=2.9e-08 Score=101.12 Aligned_cols=70 Identities=29% Similarity=0.251 Sum_probs=49.3
Q ss_pred eeeccccCCc--cHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEecCchhhhc-----------cchhhhhh
Q psy11344 76 FSPEAYNLPL--EYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLSELVY-----------ESNAVVQQ 142 (586)
Q Consensus 76 ~~P~T~~lp~--e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~~i~~-----------~~~~ivQ~ 142 (586)
-+|+|+.+.. +..++++.+ +-.+|+||..|+.|+|+.++++.+++.. ..++++|+
T Consensus 102 ~~P~t~~~~~~~~~~~~~~~~------------~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe 169 (277)
T TIGR00768 102 PQPRTGLAGSPEEALKLIEEI------------GFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQE 169 (277)
T ss_pred CCCCEEEeCCHHHHHHHHHhc------------CCCEEEEECcCCCCCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEe
Confidence 3688887754 233333322 2479999999999999999998776531 13699999
Q ss_pred hccCccccCCceeeeeEEEE
Q psy11344 143 YVKNPLLIGGYKFDLRLYVC 162 (586)
Q Consensus 143 YI~~PlLi~g~KFDlR~yvl 162 (586)
||+.+ .-+|+|++++
T Consensus 170 ~I~~~-----~~~~~rv~v~ 184 (277)
T TIGR00768 170 YIKKP-----GGRDIRVFVV 184 (277)
T ss_pred eecCC-----CCceEEEEEE
Confidence 99732 1269999885
No 14
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=98.69 E-value=1.2e-07 Score=98.24 Aligned_cols=125 Identities=19% Similarity=0.255 Sum_probs=76.2
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCee
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLA 179 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~ 179 (586)
-.+|+||..|+.|+|++++++.+++. ....++||+||..+ .-.|+|+.|+-. ++. ..+-
T Consensus 136 ~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~~~~~~lvQe~I~~~-----~g~d~rv~vig~-----~~~---~~~~ 202 (300)
T PRK10446 136 APLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEA-----QGCDIRCLVVGD-----EVV---AAIE 202 (300)
T ss_pred CCEEEEECCCCCcccEEEEcCHHHHHHHHHHHHhcCCCEEEEeeeccC-----CCceEEEEEECC-----EEE---EEEE
Confidence 36999999999999999998866543 23578999999621 347999998621 111 1123
Q ss_pred eeecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhc
Q psy11344 180 RFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELS 259 (586)
Q Consensus 180 R~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~~ 259 (586)
|.+... ++ .+|++.. |.. .. . .+-+++.+++.++..+.
T Consensus 203 r~~~~~----~~------~~n~~~g---------------~~~-~~---------~-----~l~~~~~~~a~~a~~al-- 240 (300)
T PRK10446 203 RRAKEG----DF------RSNLHRG---------------GAA-SV---------A-----SITPQEREIAIKAARTM-- 240 (300)
T ss_pred EecCCC----ch------hheeccC---------------Cee-cc---------C-----CCCHHHHHHHHHHHHHh--
Confidence 333221 11 1343311 100 00 0 01233445444443332
Q ss_pred cCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCC
Q psy11344 260 AIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPG 295 (586)
Q Consensus 260 ~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~ 295 (586)
+|. ..|+||+.|++| ||++|||++|++.
T Consensus 241 ------g~~-~~gvD~~~~~~g-~~vlEvN~~pg~~ 268 (300)
T PRK10446 241 ------ALD-VAGVDILRANRG-PLVMEVNASPGLE 268 (300)
T ss_pred ------CCC-EEEEEEEEcCCC-cEEEEEECCCChh
Confidence 232 689999999888 9999999999985
No 15
>PF00078 RVT_1: Reverse transcriptase (RNA-dependent DNA polymerase); InterPro: IPR000477 The use of an RNA template to produce DNA, for integration into the host genome and exploitation of a host cell, is a strategy employed in the replication of retroid elements, such as the retroviruses and bacterial retrons. The enzyme catalysing polymerisation is an RNA-directed DNA-polymerase, or reverse trancriptase (RT) (2.7.7.49 from EC). Reverse transcriptase occurs in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. Retroviral reverse transcriptase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The discovery of retroelements in the prokaryotes raises intriguing questions concerning their roles in bacteria and the origin and evolution of reverse transcriptases and whether the bacterial reverse transcriptases are older than eukaryotic reverse transcriptases [].; GO: 0003723 RNA binding, 0003964 RNA-directed DNA polymerase activity, 0006278 RNA-dependent DNA replication; PDB: 1MU2_B 3RWE_C 3DU6_B 3DU5_A 3KYL_A 2WOM_B 1DTQ_A 2OPS_A 3FFI_A 1VRU_B ....
Probab=98.69 E-value=5.3e-09 Score=101.80 Aligned_cols=132 Identities=14% Similarity=-0.000 Sum_probs=87.3
Q ss_pred eecCCCCCCCC-CCCcCCCchhHHhhccccCCCceeeecCCCCCCCCCchhh--HHHHHHHHHHHHHcCCeEeEEEEEcc
Q psy11344 424 LFHNTARTFRS-SKQSNKWGNGKDWSKIEPNEGNWTRIYPYTYPDQTDNVDS--DKALRNIAFNVAKFNKLSKEIFRKNE 500 (586)
Q Consensus 424 I~K~k~~~~~~-RPIsll~~i~Ki~~kii~~~r~~~~i~~~~~~~q~~s~~~--i~~l~~~i~~~~~~~~~~~~v~lD~~ 500 (586)
|||++ ..+ |||++.++..|++++++. .++...+.+.....+.+.... ... ++...+.+...+++++|++
T Consensus 1 ipK~~---~~~~RpI~~~~~~~r~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~Di~ 72 (214)
T PF00078_consen 1 IPKKN---VGKYRPISIPSVDDRIVQRVLN-KRLQPILEPIFSPSQFGFRPGRSCHD----IKKLNRFKGYLYFLKLDIS 72 (214)
T ss_dssp EESSS---SSSEEEE----EBTHHHHHHBH-H---------HHHTTSSCSHGCCCHH----HHHHHC-CGSSEEEEEECC
T ss_pred CCCcC---CCCeeEcCCCCcHHHHHHHHHH-hhccccccccCCCCCCCCcccccccc----cccccccccccccceeccc
Confidence 45555 556 999999999999999985 555555555555555541111 111 4444566677899999999
Q ss_pred ccCCccchHHHHHHHcccc----ccCcchhhhcccccCceecCCCcCcccccCCCccccchhhHHHHH
Q psy11344 501 KQCDDELNFLLQTSLGMKT----EVNLSPALANDCEVDPAVKKPMLHDMFDLLGLPVCNTGLSLFTLW 564 (586)
Q Consensus 501 KAFD~V~~~~L~~~L~~~G----~~~~~~~l~~~~~~~~~V~~g~~s~~f~~~g~~~~~~~~~~~~~~ 564 (586)
+|||+|+|..+.+.|..++ ++.++..++......+.+ ++.........|+|++....|+++-.
T Consensus 73 ~~f~sI~~~~l~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~glpqG~~~S~~l~~~ 139 (214)
T PF00078_consen 73 KAFDSIPHHRLLRKLKRFGVPKKLIRLIQNLLSDRTAKVYL-DGDLSPYFQKRGLPQGSPLSPLLFNI 139 (214)
T ss_dssp CCGGGSBBHTTTGGGGEEEEECCSCHHHHHHHHHHHH-EEC-GCSSSEEEEESBS-TTSTCHHHHHHH
T ss_pred cccccceeeeccccccccccccccccccccccccccccccc-ccccccccccccccccccccchhhcc
Confidence 9999999999999999988 577888888887774444 44346667789999999999988876
No 16
>PRK05246 glutathione synthetase; Provisional
Probab=98.59 E-value=1.1e-07 Score=99.26 Aligned_cols=84 Identities=21% Similarity=0.196 Sum_probs=55.2
Q ss_pred ceeeccccCCc--cHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEecCchh--------hh--ccchhhhhh
Q psy11344 75 NFSPEAYNLPL--EYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLSE--------LV--YESNAVVQQ 142 (586)
Q Consensus 75 ~~~P~T~~lp~--e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~~--------i~--~~~~~ivQ~ 142 (586)
.++|+|..... +..+|++.+ +..|+||..|++|+||++++..+. +. ...+|++|+
T Consensus 133 ~~vP~T~~~~~~~~~~~~~~~~-------------~~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~ 199 (316)
T PRK05246 133 ELMPPTLVTRDKAEIRAFRAEH-------------GDIILKPLDGMGGAGIFRVKADDPNLGSILETLTEHGREPVMAQR 199 (316)
T ss_pred ccCCCEEEeCCHHHHHHHHHHC-------------CCEEEEECCCCCccceEEEeCCCccHHHHHHHHHHccCCeEEEEe
Confidence 37999987643 333444332 468999999999999999965321 11 245899999
Q ss_pred hccCccccCCceeeeeEEEEEeeccCcEEEEEcc-CeeeeecC
Q psy11344 143 YVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYRE-GLARFGTD 184 (586)
Q Consensus 143 YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~-g~~R~a~~ 184 (586)
||+.+- + -|+|++|+ . . + .-. ++.|.+..
T Consensus 200 ~I~~~~--~---~D~Rv~vv-~---g-~---vv~~a~~R~~~~ 229 (316)
T PRK05246 200 YLPEIK--E---GDKRILLV-D---G-E---PVGYALARIPAG 229 (316)
T ss_pred ccccCC--C---CCEEEEEE-C---C-E---EhhheeEecCCC
Confidence 996321 2 39999987 2 1 1 233 56777654
No 17
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=98.51 E-value=6.7e-07 Score=91.44 Aligned_cols=49 Identities=31% Similarity=0.409 Sum_probs=38.8
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc------------cchhhhhhhccCccccCCceeeeeEEEE
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY------------ESNAVVQQYVKNPLLIGGYKFDLRLYVC 162 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvl 162 (586)
-.+|+||..|+.|+|+.++.+.+++.. ...+++|+||+.| ..|+|++|+
T Consensus 123 ~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~------~~d~~v~vi 183 (280)
T TIGR02144 123 YPVVLKPVIGSWGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKP------GRDIRVFVI 183 (280)
T ss_pred CCEEEEECcCCCcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCC------CCceEEEEE
Confidence 358999999999999999998776431 2468999999633 468999886
No 18
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.50 E-value=1e-06 Score=83.70 Aligned_cols=87 Identities=24% Similarity=0.350 Sum_probs=52.3
Q ss_pred ccccHHHHHHHHHHHHHhCCCCceeeccccCCccHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEecCchhh
Q psy11344 53 ICRKDQLTRYLKSMKKIFGSIYNFSPEAYNLPLEYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLSEL 132 (586)
Q Consensus 53 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~lp~e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~~i 132 (586)
+..|..+.+.+++. + . + +|+++.+... .++.+..... ...||+||..|+.|+|+.++++.+++
T Consensus 2 ~~dK~~~~~~~~~~----g-v-~-~P~~~~~~~~-~~~~~~~~~~---------~~p~vvKp~~g~gs~gv~~~~~~~~l 64 (184)
T PF13535_consen 2 CNDKYRMRELLKKA----G-V-P-VPKTRIVDSE-EELRAFAEDL---------GFPFVVKPVDGSGSRGVFIVHSPEEL 64 (184)
T ss_dssp TCCHHHHHHHHHHH----T-S------EEEECSH-HHHHHHHHHS---------SSSEEEEESS-STTTT-EEESSHHHH
T ss_pred CCCHHHHHHHHHHc----C-c-C-CCCEEEECCH-HHHHHHHHHc---------CCCEEEEcCccccCCCEEEeCCHHHH
Confidence 35677777666533 2 1 2 7888776542 3333333221 26799999999999999999998886
Q ss_pred hc------------cchhhhhhhccCccccCCceeeeeEEEE
Q psy11344 133 VY------------ESNAVVQQYVKNPLLIGGYKFDLRLYVC 162 (586)
Q Consensus 133 ~~------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvl 162 (586)
.. ...+|||+||+ |.-+.+++++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~ivqe~i~------g~e~~~~~~~~ 100 (184)
T PF13535_consen 65 EAALAEIREDSPLGNGPVIVQEYIP------GDEYSVDGVVD 100 (184)
T ss_dssp HHHHHHHHHHHS-HSSSEEEEE---------SEEEEEEEEEE
T ss_pred HHHHHHHHHhcccCCccEEEEEeee------eeeEEEEEEEE
Confidence 42 23699999996 67777777665
No 19
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=98.40 E-value=1.9e-06 Score=89.23 Aligned_cols=47 Identities=26% Similarity=0.465 Sum_probs=37.1
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEE
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVC 162 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvl 162 (586)
-.+|+||..++.|+|+.++.+.+++. ....++||+||. | .++++.|+
T Consensus 134 ~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~------G--~E~~v~vi 188 (304)
T PRK01372 134 LPLVVKPAREGSSVGVSKVKEEDELQAALELAFKYDDEVLVEKYIK------G--RELTVAVL 188 (304)
T ss_pred CCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEcccC------C--EEEEEEEE
Confidence 46899999999999999999987753 235689999995 5 36677654
No 20
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.36 E-value=7.9e-06 Score=83.80 Aligned_cols=212 Identities=15% Similarity=0.192 Sum_probs=109.7
Q ss_pred CCcccccHHHHHHHHHHHHHhCCCCceeeccccCC---ccHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEe
Q psy11344 50 ASSICRKDQLTRYLKSMKKIFGSIYNFSPEAYNLP---LEYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLF 126 (586)
Q Consensus 50 ~~~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~lp---~e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~ 126 (586)
...+..|..+.+.+..+-=..|...-..+..|... .+.++|.+.+.+. ....+++||..|++|+||.++
T Consensus 21 ~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~--------~~~~~viKP~~G~~G~Gi~~i 92 (285)
T PF14397_consen 21 YPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKH--------APDRFVIKPANGSGGKGILVI 92 (285)
T ss_pred ccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhc--------cCCcEEEEeCCCCCccCEEEE
Confidence 34566777777765543111111100133333222 2344444444321 237899999999999999998
Q ss_pred cCchh---------h----hccc--hhhhhhhccCcccc---C-CceeeeeEEEEEeeccCcEEEEEccCeeeeecCCCC
Q psy11344 127 QRLSE---------L----VYES--NAVVQQYVKNPLLI---G-GYKFDLRLYVCVPSFHPLTIFVYREGLARFGTDKFS 187 (586)
Q Consensus 127 ~~~~~---------i----~~~~--~~ivQ~YI~~PlLi---~-g~KFDlR~yvlv~s~~pl~~y~~~~g~~R~a~~~y~ 187 (586)
...+. + .... .||||++|++--.+ . .--=+||+.+++.. -.++ .-..+.|++...-.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~---~~~~-~~~a~lRlg~~~~~ 168 (285)
T PF14397_consen 93 DRRDGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD---GEVE-VLMAMLRLGRGGSG 168 (285)
T ss_pred EeecCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC---CeeE-EEEEEEEeCCCCCc
Confidence 76541 1 1122 79999999853332 2 33459999888764 1222 12345788754444
Q ss_pred CCCCCCC--------Cccccccc-cccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q psy11344 188 LANLDNP--------FAHLTNSS-LNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASEL 258 (586)
Q Consensus 188 ~~~~~~~--------~~HLTN~~-i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~ 258 (586)
.+|+..- ...+...+ .......|. .+++ +|. . + .|.. ---|+++.+++..+...
T Consensus 169 ~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~-~HPd--Tg~--~-------~--~g~~-IP~w~~~~~l~~~~~~~-- 231 (285)
T PF14397_consen 169 VDNFHQGGIGVGIDLATGLGRFAGYDQDGERYE-HHPD--TGA--P-------F--SGFQ-IPNWDEILELAKEAHRK-- 231 (285)
T ss_pred ccccCCCCEEEEEecCCCccccccccCCCCEee-eCCC--CCC--c-------c--CCcc-CCCHHHHHHHHHHHHHH--
Confidence 4443220 00011111 000000000 0000 010 0 0 0000 01377777775543322
Q ss_pred ccCCCCCCcceEEeeeeeecCCCCeEEEcccCC--CCCCCC
Q psy11344 259 SAIPQTKNCFEFFGFDILVDSSLNPWLLESQPD--TAPGTN 297 (586)
Q Consensus 259 ~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~--P~l~~~ 297 (586)
++. +..+|.|+.||++| |.|||.|+. |.+...
T Consensus 232 --~p~----~~~iGWDvait~~G-p~llE~N~~~~pgl~~~ 265 (285)
T PF14397_consen 232 --FPG----LGYIGWDVAITEDG-PVLLEGNARWDPGLMIQ 265 (285)
T ss_pred --CCC----CCeEEEEEEEcCCC-cEEEEeeCCCCCCcHhh
Confidence 321 24699999999999 999999999 998744
No 21
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=98.32 E-value=1.4e-06 Score=81.77 Aligned_cols=39 Identities=28% Similarity=0.515 Sum_probs=17.7
Q ss_pred CceEEEcCCCCCCCCceEEecCchhhhcc--chhhhhhhcc
Q psy11344 107 DNVWICKPVGQSQGRGILLFQRLSELVYE--SNAVVQQYVK 145 (586)
Q Consensus 107 ~~~wIvKP~~gs~G~GI~l~~~~~~i~~~--~~~ivQ~YI~ 145 (586)
...||+||..|+.|.||.++++.+++... ...++|+||+
T Consensus 31 ~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~~~i~Qe~i~ 71 (161)
T PF02655_consen 31 DGPWVIKPRDGAGGEGIRIVDSEDELEEFLNKLRIVQEFIE 71 (161)
T ss_dssp SSSEEEEESS-------B--SS--TTE-------EEEE---
T ss_pred CCcEEEEeCCCCCCCCeEEECCchhhccccccceEEeeeeC
Confidence 57899999999999999999998776532 2239999996
No 22
>PRK12458 glutathione synthetase; Provisional
Probab=98.29 E-value=6e-06 Score=86.82 Aligned_cols=72 Identities=19% Similarity=0.379 Sum_probs=48.8
Q ss_pred ceeeccccCCc--cHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEecCchh-----hh----ccchhhhhhh
Q psy11344 75 NFSPEAYNLPL--EYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLSE-----LV----YESNAVVQQY 143 (586)
Q Consensus 75 ~~~P~T~~lp~--e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~~-----i~----~~~~~ivQ~Y 143 (586)
..+|+|+.... +..+|++++ .....|+||..|++|+||++++..+. +. ....+++|+|
T Consensus 139 ~~vP~T~v~~~~~~~~~~~~~~-----------~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~~~~~ivQey 207 (338)
T PRK12458 139 EVRPTTHISRNKEYIREFLEES-----------PGDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSGDGYVIAQEY 207 (338)
T ss_pred CCCCCEEEeCCHHHHHHHHHHc-----------CCCeEEEEECCCCCccCeEEEecCChhhHHHHHHHHhhCCCEEEEEc
Confidence 36999987643 333443332 11238999999999999999975442 11 2457899999
Q ss_pred ccCccccCCceeeeeEEEE
Q psy11344 144 VKNPLLIGGYKFDLRLYVC 162 (586)
Q Consensus 144 I~~PlLi~g~KFDlR~yvl 162 (586)
|..+ ...|+|++|+
T Consensus 208 I~~~-----~~gDiRv~vv 221 (338)
T PRK12458 208 LPGA-----EEGDVRILLL 221 (338)
T ss_pred ccCC-----CCCCEEEEEE
Confidence 9632 2369999975
No 23
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=98.29 E-value=3.3e-06 Score=89.10 Aligned_cols=51 Identities=10% Similarity=0.023 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCcc
Q psy11344 242 LWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDL 300 (586)
Q Consensus 242 ~~~~i~~~i~~~~~~~~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~~ 300 (586)
+.++|++++.+++.+. +|....++||++|+++++||+|||+.|++...+.+
T Consensus 268 ~~~~i~~~a~~~~~~L--------g~~G~~rvDf~l~~~g~~~llEINt~Pg~t~~S~~ 318 (343)
T PRK14568 268 ERSRVQETAKAIYRAL--------GCRGLARVDMFLQEDGTVVLNEVNTLPGFTSYSRY 318 (343)
T ss_pred HHHHHHHHHHHHHHHh--------CCCcEEEEEEEEeCCCCEEEEEeeCCCCCCccCHH
Confidence 3455665554444332 24467899999999999999999999999776544
No 24
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=98.28 E-value=4.7e-06 Score=87.63 Aligned_cols=139 Identities=17% Similarity=0.178 Sum_probs=79.5
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCee
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLA 179 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~ 179 (586)
-.||+||..++.|.||.++++.+++. ....++||+||+ |+ ++++-|+.. ++ .+.. -+-+
T Consensus 163 ~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~------G~--E~~v~vl~~--~~-~~~~--~~ei 229 (333)
T PRK01966 163 LPVFVKPANLGSSVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK------GR--EIECAVLGN--DP-KASV--PGEI 229 (333)
T ss_pred CCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC------CE--EEEEEEECC--CC-eEcc--cEEE
Confidence 57999999999999999999988764 346789999995 53 566666543 11 1110 0001
Q ss_pred eeecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhc
Q psy11344 180 RFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELS 259 (586)
Q Consensus 180 R~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~~ 259 (586)
.....-|+.. ..|... +..... -... +..+.++|++++.++..+.
T Consensus 230 ~~~~~~~d~~------------------~ky~~~------~~~~~~--------Pa~l-~~~~~~~i~~~a~~~~~aL-- 274 (333)
T PRK01966 230 VKPDDFYDYE------------------AKYLDG------SAELII--------PADL-SEELTEKIRELAIKAFKAL-- 274 (333)
T ss_pred ecCCceEcHH------------------HccCCC------CceEEe--------CCCC-CHHHHHHHHHHHHHHHHHh--
Confidence 1110001100 001100 000000 0001 1234455666555544432
Q ss_pred cCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCcc
Q psy11344 260 AIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDL 300 (586)
Q Consensus 260 ~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~~ 300 (586)
+|-...++||++|.+++||+||||+.|+|...+-+
T Consensus 275 ------g~~G~~rvDf~~~~~g~~~vlEiNt~Pg~t~~s~~ 309 (333)
T PRK01966 275 ------GCSGLARVDFFLTEDGEIYLNEINTMPGFTPISMY 309 (333)
T ss_pred ------CCcceEEEEEEEcCCCCEEEEEeeCCCCCCcccHH
Confidence 23346899999999999999999999999776543
No 25
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=98.28 E-value=1.9e-06 Score=83.91 Aligned_cols=138 Identities=18% Similarity=0.293 Sum_probs=75.9
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEE-----EEE
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTI-----FVY 174 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~-----y~~ 174 (586)
-.+|+||..++...||..+++.+++. ++...+||+||. |+-|-+- |+-. +...+ ..+
T Consensus 34 ~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI~------G~E~tv~--vl~~--~~~~~~~~~ei~~ 103 (203)
T PF07478_consen 34 FPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKYDDDVLVEEFIS------GREFTVG--VLGN--GEPRVLPPVEIVF 103 (203)
T ss_dssp SSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTTHSEEEEEE--S------SEEEEEE--EEES--SSTEEEEEEEEEE
T ss_pred CCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhhcceEEEEeeec------ccceEEE--EEec--CCcccCceEEEEc
Confidence 57999999999999999999988764 456788888884 5544333 3321 11222 222
Q ss_pred ccCeeeeecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q psy11344 175 REGLARFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTI 254 (586)
Q Consensus 175 ~~g~~R~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~ 254 (586)
..++..+.. +|...+ . -+.+.+ . ... +..+.++|+++..++.
T Consensus 104 ~~~~~d~~~-Ky~~~~--~----~~~~~~--------------------p----------a~l-~~~~~~~i~~~a~~a~ 145 (203)
T PF07478_consen 104 PSEFYDYEA-KYQPAD--S----ETEYII--------------------P----------ADL-SEELQEKIKEIAKKAF 145 (203)
T ss_dssp SSSEEEHHH-HHSGCC--S----CEEEES--------------------S-----------SS--HHHHHHHHHHHHHHH
T ss_pred CCCceehhh-eeccCC--C----ceEEEe--------------------c----------CCC-CHHHHHHHHHHHHHHH
Confidence 221111110 010000 0 000000 0 001 1235566766655544
Q ss_pred HHhhccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCccc
Q psy11344 255 ASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDLR 301 (586)
Q Consensus 255 ~~~~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~~d 301 (586)
.+. +|-..-.+||.+|++|+||+||||+.|+|...+.+-
T Consensus 146 ~~l--------g~~~~~RiD~rv~~~g~~~~lEiNt~PGlt~~S~~p 184 (203)
T PF07478_consen 146 KAL--------GCRGYARIDFRVDEDGKPYFLEINTIPGLTPTSLFP 184 (203)
T ss_dssp HHT--------TTCSEEEEEEEEETTTEEEEEEEESS-G-STTSHHH
T ss_pred HHH--------cCCCceeEEEEeccCCceEEEeccCcccccCCCHHH
Confidence 332 233456899999999999999999999998776553
No 26
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=98.25 E-value=6.3e-06 Score=85.28 Aligned_cols=142 Identities=12% Similarity=0.209 Sum_probs=79.4
Q ss_pred CceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCe
Q psy11344 107 DNVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGL 178 (586)
Q Consensus 107 ~~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~ 178 (586)
.-.||+||..++.|+|+.++++.+++. ....++||+||+ |+ ++++-|+...-+ ..++ +.
T Consensus 125 ~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~vlVEeyI~------G~--E~sv~vl~~~~~-~~vl----~~ 191 (299)
T PRK14571 125 GYPCVVKPRREGSSIGVFICESDEEFQHALKEDLPRYGSVIVQEYIP------GR--EMTVSILETEKG-FEVL----PI 191 (299)
T ss_pred CCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhhCCcEEEEcccc------ce--EEEEEEEcCCCC-eeee----ce
Confidence 357999999999999999999987763 234689999995 54 777777654211 1111 00
Q ss_pred eeeecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q psy11344 179 ARFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASEL 258 (586)
Q Consensus 179 ~R~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~ 258 (586)
....... .+ +.+-++ |. .|... +..-... +..+.++|++++.+++.+.
T Consensus 192 ~e~~~~~----~~---~~~~~k---------~~-------~g~~~-------~~~p~~l-~~~~~~~i~~~a~~~~~~l- 239 (299)
T PRK14571 192 LELRPKR----RF---YDYVAK---------YT-------KGETE-------FILPAPL-NPEEERLVKETALKAFVEA- 239 (299)
T ss_pred EEEecCC----Cc---cccccc---------cC-------CCCee-------EEeCCCC-CHHHHHHHHHHHHHHHHHh-
Confidence 1110000 00 000000 10 00000 0000001 1234455666555444322
Q ss_pred ccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCccc
Q psy11344 259 SAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDLR 301 (586)
Q Consensus 259 ~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~~d 301 (586)
+|....++||++| +++||+||||..|++...+.+-
T Consensus 240 -------g~~g~~rvD~~~~-~~~~~viEiN~~Pg~~~~s~~~ 274 (299)
T PRK14571 240 -------GCRGFGRVDGIFS-DGRFYFLEINTVPGLTELSDLP 274 (299)
T ss_pred -------CCCceEEEEEEEE-CCcEEEEEeeCCCCCCccCHHH
Confidence 2335689999997 5799999999999998766543
No 27
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=98.22 E-value=7.5e-06 Score=85.22 Aligned_cols=140 Identities=17% Similarity=0.176 Sum_probs=78.6
Q ss_pred CceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCe
Q psy11344 107 DNVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGL 178 (586)
Q Consensus 107 ~~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~ 178 (586)
.-.+|+||..++.|+||.++.+.+++. ....++||+||+ |+ ++++.++... .-+.+
T Consensus 146 ~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~------G~--e~~v~vi~~~-~~~~~------- 209 (315)
T TIGR01205 146 GFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFEYDEEVLVEQFIK------GR--ELEVSILGNE-EALPI------- 209 (315)
T ss_pred CCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCCC------CE--EEEEEEECCC-Cccce-------
Confidence 357999999999999999999987764 245689999983 44 6777776421 10000
Q ss_pred eeeecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q psy11344 179 ARFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASEL 258 (586)
Q Consensus 179 ~R~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~ 258 (586)
+....+.-...+.. . .|... ....+.- ... +..+.++|++++.+.+.+..
T Consensus 210 ~~~~~~~~~~~~~~------~---------~~~~~-----~~~~~~p---------~~l-~~~~~~~i~~~a~~~~~~lg 259 (315)
T TIGR01205 210 IEIVPEIEGFYDYE------A---------KYLDG-----STEYVIP---------APL-DEELEEKIKELALKAYKALG 259 (315)
T ss_pred EEecCCCCCeeCcc------c---------ccCCC-----CeeEEeC---------CCC-CHHHHHHHHHHHHHHHHHhC
Confidence 00000000000000 0 00000 0000000 001 11234556665555444332
Q ss_pred ccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCcc
Q psy11344 259 SAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDL 300 (586)
Q Consensus 259 ~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~~ 300 (586)
+-..+++||++|.+++||+||||..|++..++-+
T Consensus 260 --------~~G~~~vD~~~~~~g~~~viEvN~~pg~~~~s~~ 293 (315)
T TIGR01205 260 --------CRGLARVDFFLDEEGEIYLNEINTIPGMTAISLF 293 (315)
T ss_pred --------CCceEEEEEEEeCCCCEEEEEeeCCCCCCCccHH
Confidence 1245899999999999999999999999876543
No 28
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=98.15 E-value=1.1e-05 Score=83.51 Aligned_cols=136 Identities=11% Similarity=0.107 Sum_probs=76.3
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc-------cchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCeee
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY-------ESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLAR 180 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~-------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~R 180 (586)
-.+|+||..++.|.|+.++++.+++.. ...++||+||+ |+ ++++.|+-. ..+.... +.
T Consensus 131 ~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~~~~~lvEefI~------G~--E~tv~vl~~--~~~~~~~-----i~ 195 (296)
T PRK14569 131 FPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYGEVMIEQWVT------GK--EITVAIVND--EVYSSVW-----IE 195 (296)
T ss_pred CCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHhcCCEEEEcccc------cE--EEEEEEECC--cCcceEE-----Ee
Confidence 469999999999999999999887641 24688899984 54 566655422 1111110 00
Q ss_pred eecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhcc
Q psy11344 181 FGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELSA 260 (586)
Q Consensus 181 ~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~~~ 260 (586)
...+-|+.. . | |.. +..... -... ...+.++|++++.+++.+.
T Consensus 196 ~~~~~~~~~---~-----------k----~~~-------~~~~~~--------P~~l-~~~~~~~i~~~a~~~~~~L--- 238 (296)
T PRK14569 196 PQNEFYDYE---S-----------K----YSG-------KSIYHS--------PSGL-CEQKELEVRQLAKKAYDLL--- 238 (296)
T ss_pred cCCCcCChh---h-----------c----cCC-------CcEEEe--------CCCC-CHHHHHHHHHHHHHHHHHh---
Confidence 000101100 0 0 000 000000 0001 1123345555544443322
Q ss_pred CCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCcc
Q psy11344 261 IPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDL 300 (586)
Q Consensus 261 ~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~~ 300 (586)
+|-...++||.+|++++||++|||+.|+|..++-+
T Consensus 239 -----g~~G~~rvD~~~~~~g~~~vlEIN~~Pg~t~~s~~ 273 (296)
T PRK14569 239 -----GCSGHARVDFIYDDRGNFYIMEINSSPGMTDNSLS 273 (296)
T ss_pred -----CCceEEEEEEEEcCCCCEEEEEeeCCCCCCCcCHH
Confidence 23356899999999999999999999999876543
No 29
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=98.14 E-value=7.8e-06 Score=85.10 Aligned_cols=70 Identities=19% Similarity=0.225 Sum_probs=48.2
Q ss_pred ceeeccccCCc--cHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEecCch-hh-------h--ccchhhhhh
Q psy11344 75 NFSPEAYNLPL--EYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLS-EL-------V--YESNAVVQQ 142 (586)
Q Consensus 75 ~~~P~T~~lp~--e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~-~i-------~--~~~~~ivQ~ 142 (586)
..+|+|....+ +..+|++.+ +..|+||..|++|+|+++++..+ .. . ...++++|+
T Consensus 132 ~~vP~T~v~~~~~~~~~~~~~~-------------g~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~ 198 (312)
T TIGR01380 132 KVIPPTLVTRDKAEIRAFLAEH-------------GDIVLKPLDGMGGEGIFRLDPGDPNFNSILETMTQRGREPVMAQR 198 (312)
T ss_pred CCCCCEEEeCCHHHHHHHHHHc-------------CCEEEEECCCCCCceEEEEcCCCccHHHHHHHHHhccCCcEEEEe
Confidence 36999986543 344444332 35899999999999999986522 11 1 235799999
Q ss_pred hccCccccCCceeeeeEEEE
Q psy11344 143 YVKNPLLIGGYKFDLRLYVC 162 (586)
Q Consensus 143 YI~~PlLi~g~KFDlR~yvl 162 (586)
||..+ .+ -|+|++|+
T Consensus 199 yI~~~---~~--~D~Rv~vv 213 (312)
T TIGR01380 199 YLPEI---KE--GDKRILLI 213 (312)
T ss_pred ccccc---cC--CCEEEEEE
Confidence 99632 22 49999886
No 30
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.14 E-value=5.9e-06 Score=92.28 Aligned_cols=46 Identities=33% Similarity=0.535 Sum_probs=36.8
Q ss_pred eEEEcCCCCCCCCceEE-ecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEE
Q psy11344 109 VWICKPVGQSQGRGILL-FQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVC 162 (586)
Q Consensus 109 ~wIvKP~~gs~G~GI~l-~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvl 162 (586)
..|+||..|++|+||.+ +++.+++. ....++||+||. ..|+|+.|+
T Consensus 333 ~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~~~~~~vlvEe~i~--------G~d~Rv~Vi 387 (547)
T TIGR03103 333 AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKARQFCDRVLLERYVP--------GEDLRLVVI 387 (547)
T ss_pred CEEEEECCCCCCcCeEEecCCHHHHHHHHHHHHhcCCcEEEEEecc--------CCeEEEEEE
Confidence 38999999999999997 78777653 234689999995 359999875
No 31
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.14 E-value=3.7e-06 Score=79.33 Aligned_cols=85 Identities=19% Similarity=0.282 Sum_probs=46.8
Q ss_pred ceeeccccCCc--cHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEecCch----hh----h--ccchhhhhh
Q psy11344 75 NFSPEAYNLPL--EYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLS----EL----V--YESNAVVQQ 142 (586)
Q Consensus 75 ~~~P~T~~lp~--e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~----~i----~--~~~~~ivQ~ 142 (586)
+++|+|++-.+ ++.+|++.+ +.+|+||..|..|+|+++++.-+ .+ . ...++++|+
T Consensus 10 ~~~P~T~vs~~~~~i~~f~~~~-------------~~~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~ 76 (173)
T PF02955_consen 10 ELIPPTLVSRDKEEIRAFIEEH-------------GDIVLKPLDGMGGRGVFRISRDDPNLNSILETLTKNGERPVMVQP 76 (173)
T ss_dssp CCS--EEEES-HHHHHHHHHHH-------------SSEEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE
T ss_pred ccCcCEEEECCHHHHHHHHHHC-------------CCEEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEe
Confidence 78999987643 344454443 34999999999999999998742 11 1 235799999
Q ss_pred hccCccccCCceeeeeEEEEEeeccCcEEEEEccCeeeeecCC
Q psy11344 143 YVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLARFGTDK 185 (586)
Q Consensus 143 YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~R~a~~~ 185 (586)
||.. .-+| |.|+.++=.. +-+++.|.....
T Consensus 77 flp~--i~~G---DkRii~~nG~--------~~~av~R~P~~g 106 (173)
T PF02955_consen 77 FLPE--IKEG---DKRIILFNGE--------PSHAVRRIPAKG 106 (173)
T ss_dssp --GG--GGG----EEEEEEETTE--------E-SEEEEE--SS
T ss_pred cccc--ccCC---CEEEEEECCE--------EhHHeecCCCCC
Confidence 9963 3466 8899877321 223667777654
No 32
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=98.02 E-value=2.6e-05 Score=82.41 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=37.1
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEEE
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCV 163 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv 163 (586)
-.+|+||..++.+.||.++++.+++. ....++||+||. |+ ++++-|+.
T Consensus 172 ~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~------G~--E~sv~vi~ 227 (347)
T PRK14572 172 FPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFESDSKVMSQSFLS------GT--EVSCGVLE 227 (347)
T ss_pred CCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCcc------cE--EEEEEEEe
Confidence 47999999999999999999988764 235688999984 54 55655553
No 33
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=97.95 E-value=6.3e-05 Score=79.91 Aligned_cols=144 Identities=16% Similarity=0.151 Sum_probs=80.2
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCee
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLA 179 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~ 179 (586)
-.+|+||..++.|.||.++++.+++. .+...+||+||+ |+ ++++-|+-. ....++.-.+ +
T Consensus 172 ~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~------Gr--Ei~v~Vlg~--~~~~v~~~~E--i 239 (364)
T PRK14570 172 YPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE------AR--EIECSVIGN--EQIKIFTPGE--I 239 (364)
T ss_pred CCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC------CE--EEEEEEECC--CCceEeeeEE--E
Confidence 47999999988899999999988764 235678899985 44 666666522 1122221111 1
Q ss_pred eeecCC-CCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q psy11344 180 RFGTDK-FSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASEL 258 (586)
Q Consensus 180 R~a~~~-y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~ 258 (586)
.+.... |+ ... .|... .|.... +.--... +..+.++|++++.++..+.
T Consensus 240 ~~~~~~f~d---y~~---------------Ky~~~-----~~~~~~------~~~Pa~l-~~e~~~~i~~~A~~~~~aL- 288 (364)
T PRK14570 240 VVQDFIFYD---YDA---------------KYSTI-----PGNSIV------FNIPAHL-DTKHLLDIKEYAFLTYKNL- 288 (364)
T ss_pred EeCCCCccC---HHH---------------hcCCC-----CCCceE------EECCCCC-CHHHHHHHHHHHHHHHHHh-
Confidence 111100 00 000 01000 000000 0000001 1234456666655444332
Q ss_pred ccCCCCCCcceEEeeeeeecC-CCCeEEEcccCCCCCCCCCccc
Q psy11344 259 SAIPQTKNCFEFFGFDILVDS-SLNPWLLESQPDTAPGTNKDLR 301 (586)
Q Consensus 259 ~~~~~~~~~Fel~G~D~liD~-~~kpwLlEVN~~P~l~~~~~~d 301 (586)
+|..+..+||++|. +++||++|||+.|+|...+.+-
T Consensus 289 -------g~~G~~RvDf~l~~~~g~~yvlEiNt~PG~t~~S~~p 325 (364)
T PRK14570 289 -------ELRGMARIDFLIEKDTGLIYLNEINTIPGFTDISMFA 325 (364)
T ss_pred -------CCcceEEEEEEEECCCCcEEEEEeeCCCCCCcccHHH
Confidence 34567899999996 5999999999999998876553
No 34
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=97.94 E-value=6.5e-05 Score=73.29 Aligned_cols=34 Identities=21% Similarity=0.570 Sum_probs=30.3
Q ss_pred CceEEEcCCCCCCCCceEEecCchhhhccchhhhhhhcc
Q psy11344 107 DNVWICKPVGQSQGRGILLFQRLSELVYESNAVVQQYVK 145 (586)
Q Consensus 107 ~~~wIvKP~~gs~G~GI~l~~~~~~i~~~~~~ivQ~YI~ 145 (586)
...+|+||..||+|.||.+..+..++ .|+|+||+
T Consensus 138 ~~k~ViKp~dgCgge~i~~~~~~pd~-----~i~qEfIe 171 (307)
T COG1821 138 PKKYVIKPADGCGGEGILFGRDFPDI-----EIAQEFIE 171 (307)
T ss_pred CceEEecccccCCcceeeccCCCcch-----hhHHHhcC
Confidence 57899999999999999998876665 89999997
No 35
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=97.90 E-value=9.7e-05 Score=78.25 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=31.3
Q ss_pred ceEEEcCCCCC-CCCceEEecCchhhhc------cchhhhhhhcc
Q psy11344 108 NVWICKPVGQS-QGRGILLFQRLSELVY------ESNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~gs-~G~GI~l~~~~~~i~~------~~~~ivQ~YI~ 145 (586)
-.+|+||..++ .|+|+.++++.+++.. ...++||+||+
T Consensus 134 ~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~I~ 178 (352)
T TIGR01161 134 FPVVLKARTGGYDGRGQYRIRNEADLPQAAKELGDRECIVEEFVP 178 (352)
T ss_pred CCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhcCCCcEEEEecCC
Confidence 47899999875 8999999999888742 23789999996
No 36
>cd03487 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.
Probab=97.88 E-value=8.8e-06 Score=80.00 Aligned_cols=110 Identities=5% Similarity=-0.199 Sum_probs=69.2
Q ss_pred CCCcCCCchhHHhhccccCCCceeeecCCCCCCCCCchhhHHHHHHHHHHHHHcCCeEeEEEEEccccCCccchHHHHHH
Q psy11344 435 SKQSNKWGNGKDWSKIEPNEGNWTRIYPYTYPDQTDNVDSDKALRNIAFNVAKFNKLSKEIFRKNEKQCDDELNFLLQTS 514 (586)
Q Consensus 435 RPIsll~~i~Ki~~kii~~~r~~~~i~~~~~~~q~~s~~~i~~l~~~i~~~~~~~~~~~~v~lD~~KAFD~V~~~~L~~~ 514 (586)
|||+..+...|++.++++ .++.. ...+++.|.|....-..+.+ +.......+++.+|+++|||+|+|+.|.++
T Consensus 7 R~I~~p~~~~r~iq~~l~-~~l~~--~~~~~~~~~g~~~grs~~~~----~~~~~~~~~v~~~Di~~fFdsI~~~~L~~~ 79 (214)
T cd03487 7 RTIYAPKPELKAIQRKIL-SNLLS--KLPVHDAAHGFVKGRSIITN----AKPHCGAKYVLKLDIKDFFPSITFERVRGV 79 (214)
T ss_pred eeEeCCCHHHHHHHHHHH-HHHhc--cCCCCcceeeecCCCCHHHH----HHHhcCCCEEEEeehhhhcccCCHHHHHHH
Confidence 999999999999999985 33331 12233344431111000111 112234568999999999999999999999
Q ss_pred Hcccccc-CcchhhhcccccCceecCCCcCcccccCCCccccchhhHHHHH
Q psy11344 515 LGMKTEV-NLSPALANDCEVDPAVKKPMLHDMFDLLGLPVCNTGLSLFTLW 564 (586)
Q Consensus 515 L~~~G~~-~~~~~l~~~~~~~~~V~~g~~s~~f~~~g~~~~~~~~~~~~~~ 564 (586)
|++.|.. ..+..++..... + + .|+||++...|+++-+
T Consensus 80 l~~~~~~~~~~~~~l~~~~~---~-~---------~GlpQG~~lSp~Lanl 117 (214)
T cd03487 80 FRSLGYFSPDVATILAKLCT---Y-N---------GHLPQGAPTSPALSNL 117 (214)
T ss_pred HHHcCCCCHHHHHHHHHHHh---C-C---------CCcCCCCcccHHHHHH
Confidence 9999844 222222222111 1 1 2999999999987765
No 37
>PLN02257 phosphoribosylamine--glycine ligase
Probab=97.75 E-value=0.00015 Score=78.96 Aligned_cols=29 Identities=17% Similarity=0.107 Sum_probs=25.4
Q ss_pred cceEEeeeeeec-CCCCeEEEcccCCCCCC
Q psy11344 267 CFEFFGFDILVD-SSLNPWLLESQPDTAPG 295 (586)
Q Consensus 267 ~Fel~G~D~liD-~~~kpwLlEVN~~P~l~ 295 (586)
...++.+|||++ +++.||+||+|+.|+..
T Consensus 264 y~Gvl~ve~ml~~~~g~p~vLE~N~R~Gdp 293 (434)
T PLN02257 264 FVGVLYAGLMIEKKSGLPKLLEYNVRFGDP 293 (434)
T ss_pred cEEEEEEEEEEEcCCCCEEEEEEECCCCCC
Confidence 356788999999 78999999999999984
No 38
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=97.65 E-value=0.00024 Score=74.21 Aligned_cols=49 Identities=20% Similarity=0.419 Sum_probs=38.5
Q ss_pred CceEEEcCCCCCCCCceEEecCchhhh----ccchhhhhhhccCccccCCceeeeeEEE
Q psy11344 107 DNVWICKPVGQSQGRGILLFQRLSELV----YESNAVVQQYVKNPLLIGGYKFDLRLYV 161 (586)
Q Consensus 107 ~~~wIvKP~~gs~G~GI~l~~~~~~i~----~~~~~ivQ~YI~~PlLi~g~KFDlR~yv 161 (586)
.-.+|+||..|+.|+|+.++++.+++. ....++||+||. |+-+++.+++
T Consensus 148 ~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~~~~~lvqeyi~------G~e~~v~~~~ 200 (326)
T PRK12767 148 QFPLFVKPRDGSASIGVFKVNDKEELEFLLEYVPNLIIQEFIE------GQEYTVDVLC 200 (326)
T ss_pred CCCEEEEeCCCCCccCeEEeCCHHHHHHHHHhCCCeEEEeccC------CceEEEEEEE
Confidence 356999999999999999999988764 335799999994 5666665544
No 39
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.64 E-value=0.00024 Score=73.83 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCcceEEeeeeeecC-CCCeEEEcccCCCCCCCCCccc
Q psy11344 241 LLWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDS-SLNPWLLESQPDTAPGTNKDLR 301 (586)
Q Consensus 241 ~~~~~i~~~i~~~~~~~~~~~~~~~~~Fel~G~D~liD~-~~kpwLlEVN~~P~l~~~~~~d 301 (586)
.+.++|+++..++..+. +|-.+-|+||++|+ .+++||+|||++|+|...+-+.
T Consensus 242 ~~~~~i~~lA~~a~~al--------g~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~P 295 (317)
T COG1181 242 EIHEEIKELALRAYKAL--------GCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLFP 295 (317)
T ss_pred HHHHHHHHHHHHHHHhc--------CCCceEEEEEEEECCCCCEEEEEEeCCCCCcccccch
Confidence 35566666655544432 34457899999999 8999999999999987666554
No 40
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=97.63 E-value=0.0004 Score=74.19 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=31.7
Q ss_pred CceEEEcCCCC-CCCCceEEecCchhhhc------cchhhhhhhcc
Q psy11344 107 DNVWICKPVGQ-SQGRGILLFQRLSELVY------ESNAVVQQYVK 145 (586)
Q Consensus 107 ~~~wIvKP~~g-s~G~GI~l~~~~~~i~~------~~~~ivQ~YI~ 145 (586)
+-.+|+||..+ +.|+|+.++++.+++.. ...+|||+||.
T Consensus 135 g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~I~ 180 (372)
T PRK06019 135 GLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALLGSVPCILEEFVP 180 (372)
T ss_pred CCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhcCCCCEEEEecCC
Confidence 35799999984 68999999999888742 34789999996
No 41
>PRK07206 hypothetical protein; Provisional
Probab=97.61 E-value=0.0004 Score=75.26 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=31.7
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc---------------cchhhhhhhcc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY---------------ESNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~---------------~~~~ivQ~YI~ 145 (586)
..+|+||..|+.|+|++++++.+++.. ...++||+||+
T Consensus 147 ~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~ 199 (416)
T PRK07206 147 RPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI 199 (416)
T ss_pred CCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc
Confidence 378999999999999999999887631 24689999996
No 42
>PRK06849 hypothetical protein; Provisional
Probab=97.61 E-value=0.0003 Score=75.60 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=31.0
Q ss_pred CceEEEcCCCCCCCCceEEecCchhhhc-----cchhhhhhhcc
Q psy11344 107 DNVWICKPVGQSQGRGILLFQRLSELVY-----ESNAVVQQYVK 145 (586)
Q Consensus 107 ~~~wIvKP~~gs~G~GI~l~~~~~~i~~-----~~~~ivQ~YI~ 145 (586)
...+|+||..++.|+|+.++.+.+.+.. ..++|||+||+
T Consensus 152 ~~P~vlKP~~~~~~~~v~~~~~~~~l~~~~~~~~~~~ivQe~I~ 195 (389)
T PRK06849 152 HTPYVLKPIYSRFVRRVDLLPKEAALKELPISKDNPWVMQEFIQ 195 (389)
T ss_pred CCcEEEEeCcccCCCeEEEecCHHHhcccccCCCCCeEEEEEec
Confidence 3589999999999999999877554431 24689999996
No 43
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=97.59 E-value=0.00039 Score=74.34 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=32.0
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc------------cchhhhhhhcc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY------------ESNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~------------~~~~ivQ~YI~ 145 (586)
-.+|+||..|+.|+|+.++++.+++.. ...+|||+||+
T Consensus 137 ~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~ 186 (380)
T TIGR01142 137 YPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFID 186 (380)
T ss_pred CCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecC
Confidence 479999999999999999999887641 24689999995
No 44
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=97.49 E-value=0.00078 Score=71.07 Aligned_cols=144 Identities=18% Similarity=0.232 Sum_probs=80.4
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc-------------cchhhhhhhccCccccCCceeeeeEEEEE-ee-c---cCc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY-------------ESNAVVQQYVKNPLLIGGYKFDLRLYVCV-PS-F---HPL 169 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~-------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv-~s-~---~pl 169 (586)
...|+||..++.|+|++++++.+++.. ...++||+||. |..|.+=+|+-. .. . ..-
T Consensus 150 ~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~------G~e~sv~~f~s~~~~~~e~l~id 223 (358)
T PRK13278 150 RPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVV------GVPYYFHYFYSPIKNRLELLGID 223 (358)
T ss_pred CCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCC------CcEEEEEEEEeccCCeEEEEeec
Confidence 468999999999999999999877531 35789999986 666655554420 00 0 001
Q ss_pred EEEEE-ccCeeeeecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHH
Q psy11344 170 TIFVY-REGLARFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISS 248 (586)
Q Consensus 170 ~~y~~-~~g~~R~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~ 248 (586)
+-|.- .+|+.|+....+..... .+.|.. .|+ +.. .+. ..+.+++.+
T Consensus 224 ~r~~~~~d~~~r~p~~~~~~~~~---------------~p~~v~------~Gn-~P~-~~r----------esll~~v~~ 270 (358)
T PRK13278 224 RRYESNIDGLVRIPAKDQLELGI---------------DPTYVV------VGN-IPV-VLR----------ESLLPQVFE 270 (358)
T ss_pred eeeeecccceeeccchhhhhccc---------------CCceeE------ecc-eec-cch----------HhHHHHHHH
Confidence 12222 34555544332110000 011111 121 111 011 123455555
Q ss_pred HHHHHHHHhhccCCCCCCcceEEeeeeeecCCCCeEEEcccCCC
Q psy11344 249 IIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDT 292 (586)
Q Consensus 249 ~i~~~~~~~~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P 292 (586)
.+.+.+.++...++ +....-|.+|+++++++++|++|||..+
T Consensus 271 ~~~~~v~a~~~~~~--~~~~Gp~~ie~~~~~d~~~~V~Eis~R~ 312 (358)
T PRK13278 271 YGERFVETSKELVP--PGMIGPFCLESVVTDNLEIVVFEISARI 312 (358)
T ss_pred HHHHHHHHHHHhcC--ccccCCceEEEEEcCCCCEEEEEEeCcc
Confidence 55555555444443 1333558899999999999999998777
No 45
>PRK14016 cyanophycin synthetase; Provisional
Probab=97.47 E-value=0.00027 Score=81.71 Aligned_cols=47 Identities=28% Similarity=0.486 Sum_probs=38.1
Q ss_pred ceEEEcCCCCCCCCceEE-ecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEE
Q psy11344 108 NVWICKPVGQSQGRGILL-FQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVC 162 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l-~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvl 162 (586)
-..|+||..|++|+|+.+ +++.+++. ....++||+||. ..|+|++|+
T Consensus 250 ~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe~I~--------G~d~Rv~Vv 305 (727)
T PRK14016 250 YPVVVKPLDGNHGRGVTVNITTREEIEAAYAVASKESSDVIVERYIP--------GKDHRLLVV 305 (727)
T ss_pred CCEEEEECCCCCCCceEEecCCHHHHHHHHHHHHHhCCeEEEEEecC--------CceEEEEEE
Confidence 568999999999999998 88877753 235799999995 358998875
No 46
>PRK08462 biotin carboxylase; Validated
Probab=97.46 E-value=0.002 Score=70.60 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=31.4
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccC
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKN 146 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~ 146 (586)
-.+|+||..|+.|+|+.++++.+++.. ...++||+||+.
T Consensus 155 ~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g 207 (445)
T PRK08462 155 YPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINN 207 (445)
T ss_pred CCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCC
Confidence 579999999999999999999887642 134678888863
No 47
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=97.44 E-value=0.00051 Score=78.48 Aligned_cols=48 Identities=23% Similarity=0.565 Sum_probs=36.7
Q ss_pred ceEEEcCCCCCCCCceEEecC---chhhh--------ccchhhhhhhccCccccCCceeeeeEEEEE
Q psy11344 108 NVWICKPVGQSQGRGILLFQR---LSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCV 163 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~---~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv 163 (586)
...+|||..|+.|+||.++.+ .+++. ....++||+||. | -|+|+.|+-
T Consensus 512 ~PVVVKP~~g~~G~GVsi~~~~~~~eel~~Al~~A~~~~~~VLVEefI~------G--~EyRv~VIg 570 (737)
T TIGR01435 512 KAIVVKPKSTNYGLGITIFKNGFTLEDFQEALNIAFSEDSSVIIEEFLP------G--TEYRFFVLN 570 (737)
T ss_pred CCEEEeeCCCCCcCCeEEecCcCCHHHHHHHHHHHHhcCCeEEEEeccc------C--CEEEEEEEC
Confidence 458999999999999999876 33332 345689999995 4 589998873
No 48
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=97.43 E-value=0.0031 Score=69.11 Aligned_cols=39 Identities=26% Similarity=0.442 Sum_probs=31.6
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccC
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKN 146 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~ 146 (586)
-.+|+||..|+.|+|+.++++.+++.. ...++||+||+.
T Consensus 153 ~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g 205 (449)
T TIGR00514 153 YPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIEN 205 (449)
T ss_pred CCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 468999999999999999999887641 235788888863
No 49
>PRK05586 biotin carboxylase; Validated
Probab=97.42 E-value=0.0019 Score=70.82 Aligned_cols=38 Identities=18% Similarity=0.405 Sum_probs=30.8
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhcc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~ 145 (586)
-..|+||..|+.|+|+.++++.+++.. ...++||+||+
T Consensus 153 yPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~ 204 (447)
T PRK05586 153 YPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIE 204 (447)
T ss_pred CCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 469999999999999999999887632 23577888886
No 50
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=97.38 E-value=0.0017 Score=70.52 Aligned_cols=29 Identities=7% Similarity=0.019 Sum_probs=25.7
Q ss_pred cceEEeeeeeecCCCCeEEEcccCCCCCC
Q psy11344 267 CFEFFGFDILVDSSLNPWLLESQPDTAPG 295 (586)
Q Consensus 267 ~Fel~G~D~liD~~~kpwLlEVN~~P~l~ 295 (586)
+..++.+|||++++|+||+||+|..|+-.
T Consensus 270 ~~Gvl~~e~~it~~g~~~vlE~n~R~Gdp 298 (426)
T PRK13789 270 YRGLLYAGLMISPEGEPKVVEFNCRFGDP 298 (426)
T ss_pred ceEEEEEEEEEcCCCCEEEEEEecCCCCc
Confidence 45789999999999999999999999743
No 51
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=97.37 E-value=0.0022 Score=77.13 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=38.1
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccCccccCCceeeeeEEEEEe
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKNPLLIGGYKFDLRLYVCVP 164 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~ 164 (586)
-.+|+||..|+.|+|+.++++.+++.. ...++||+||+.| -++.+-++..
T Consensus 153 yPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~-------reIeVqVlgD 216 (1143)
T TIGR01235 153 YPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERP-------RHIEVQLLGD 216 (1143)
T ss_pred CCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCC-------eEEEEEEEEe
Confidence 469999999999999999999887641 2457999999754 2466655544
No 52
>PRK06524 biotin carboxylase-like protein; Validated
Probab=97.35 E-value=0.0017 Score=70.65 Aligned_cols=49 Identities=14% Similarity=0.117 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcceEEeeeeeecC-CCCeEEEcccCCCCCC
Q psy11344 242 LWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDS-SLNPWLLESQPDTAPG 295 (586)
Q Consensus 242 ~~~~i~~~i~~~~~~~~~~~~~~~~~Fel~G~D~liD~-~~kpwLlEVN~~P~l~ 295 (586)
+.++|++++.++..+.. .-+|..++++||++|. ++++|++|||..|+=.
T Consensus 277 i~eeIqeiA~ka~~aL~-----~lG~~Gv~rVDFfvd~ddgevYfnEINPR~~G~ 326 (493)
T PRK06524 277 QTRKAREMVRKLGDVLS-----REGYRGYFEVDLLHDLDADELYLGEVNPRLSGA 326 (493)
T ss_pred HHHHHHHHHHHHHHHhh-----cCCCEEEEEEEEEEECCCCeEEEEEEeCCcccc
Confidence 44556666554444331 1246788999999996 6999999999988764
No 53
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=97.29 E-value=0.004 Score=68.63 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=31.6
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccC
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKN 146 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~ 146 (586)
-.+|+||..|+.|+|+.++++.+++.. ...++||+||+.
T Consensus 156 yPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~ 208 (467)
T PRK12833 156 YPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIAR 208 (467)
T ss_pred CCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC
Confidence 469999999999999999999887642 235778888863
No 54
>PRK12999 pyruvate carboxylase; Reviewed
Probab=97.26 E-value=0.0037 Score=75.59 Aligned_cols=40 Identities=25% Similarity=0.420 Sum_probs=32.9
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccCc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKNP 147 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~P 147 (586)
-.+|+||..|+.|+|+.++++.+++.. ...++||+||+.|
T Consensus 157 yPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~ 210 (1146)
T PRK12999 157 YPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENP 210 (1146)
T ss_pred CCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCC
Confidence 569999999999999999999887641 2468999999743
No 55
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=97.26 E-value=0.0045 Score=68.38 Aligned_cols=39 Identities=28% Similarity=0.438 Sum_probs=31.3
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccC
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKN 146 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~ 146 (586)
-.+|+||..|+.|+||.++++.+++.. ...++||+||+.
T Consensus 153 yPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~ 205 (478)
T PRK08463 153 YPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVN 205 (478)
T ss_pred CCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC
Confidence 469999999999999999999887632 245788888864
No 56
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=97.26 E-value=0.0045 Score=67.28 Aligned_cols=36 Identities=17% Similarity=0.446 Sum_probs=29.7
Q ss_pred EEEcCCCCCCCCceEEecCchhhhc-------------cchhhhhhhcc
Q psy11344 110 WICKPVGQSQGRGILLFQRLSELVY-------------ESNAVVQQYVK 145 (586)
Q Consensus 110 wIvKP~~gs~G~GI~l~~~~~~i~~-------------~~~~ivQ~YI~ 145 (586)
+|+||..++.|+|+.++++.+++.. ...++||+||+
T Consensus 143 ~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~ 191 (423)
T TIGR00877 143 IVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLD 191 (423)
T ss_pred EEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECcc
Confidence 9999999999999999999877531 13578888885
No 57
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=97.26 E-value=0.0041 Score=67.57 Aligned_cols=38 Identities=18% Similarity=0.400 Sum_probs=30.7
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhcc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~ 145 (586)
-.+|+||..++.|+|+.++++.+++.. ...++||+||+
T Consensus 138 ~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~ 189 (420)
T PRK00885 138 APIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD 189 (420)
T ss_pred CCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC
Confidence 468999999999999999999877531 23578888885
No 58
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=97.26 E-value=0.0011 Score=78.08 Aligned_cols=52 Identities=13% Similarity=0.066 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCcc
Q psy11344 241 LLWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDL 300 (586)
Q Consensus 241 ~~~~~i~~~i~~~~~~~~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~~ 300 (586)
.+.++|+++..+...+. +|-....+||++|++++||++|||+.|+|...+.+
T Consensus 713 ~~~~~i~~~a~~~~~aL--------g~~G~~riDf~v~~~g~~yv~EiNt~PG~t~~s~~ 764 (809)
T PRK14573 713 ESQEQVLELAERIYRLL--------QGKGSCRIDFFLDEEGNFWLSEMNPIPGMTEASPF 764 (809)
T ss_pred HHHHHHHHHHHHHHHHh--------CCceEEEEEEEEcCCCCEEEEEeeCCCCCCcccHH
Confidence 34466666655444432 25567899999999999999999999999876654
No 59
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=97.26 E-value=0.0012 Score=70.81 Aligned_cols=48 Identities=21% Similarity=0.433 Sum_probs=36.1
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc----------cchhhhhhhccCccccCCceeeeeEEE
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY----------ESNAVVQQYVKNPLLIGGYKFDLRLYV 161 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~----------~~~~ivQ~YI~~PlLi~g~KFDlR~yv 161 (586)
-..++||..++.|+|+.++++.+++.. ...+|||+||+ |.-+.+.+++
T Consensus 103 ~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~------G~E~sv~~~~ 160 (379)
T PRK13790 103 LPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLE------GEEFSLMTFV 160 (379)
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEccc------CceEEEEEEe
Confidence 578999999999999999999887641 23577787774 5566665543
No 60
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=97.20 E-value=0.00067 Score=80.04 Aligned_cols=47 Identities=28% Similarity=0.484 Sum_probs=37.4
Q ss_pred ceEEEcCCCCCCCCceEE-ecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEE
Q psy11344 108 NVWICKPVGQSQGRGILL-FQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVC 162 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l-~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvl 162 (586)
-..++||..|++|+|+.+ +++.+++. ....++||+||. | -|+|++|+
T Consensus 249 ~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~~~~~~vlVEefI~------G--~e~rvlVv 304 (864)
T TIGR02068 249 YPVVIKPYDGNHGRGVTINILTRDEIESAYEAAVEESSGVIVERFIT------G--RDHRLLVV 304 (864)
T ss_pred CCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHHhhCCcEEEEEecc------C--CEEEEEEE
Confidence 468999999999999998 88877753 235689999994 4 48898775
No 61
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=97.19 E-value=0.005 Score=67.43 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=30.7
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhcc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~ 145 (586)
-.+|+||..++.|+|+.++++.+++.. ...++||+||+
T Consensus 153 ~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~ 204 (450)
T PRK06111 153 YPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIE 204 (450)
T ss_pred CCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccC
Confidence 469999999999999999999887641 23577788885
No 62
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=97.19 E-value=0.0024 Score=68.62 Aligned_cols=38 Identities=18% Similarity=0.406 Sum_probs=31.8
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc------------cchhhhhhhcc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY------------ESNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~------------~~~~ivQ~YI~ 145 (586)
-.+|+||..++.|+|+.++++.+++.. ...+|||+||+
T Consensus 150 ~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~ 199 (395)
T PRK09288 150 YPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFID 199 (395)
T ss_pred CCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecC
Confidence 479999999999999999999887631 14689999995
No 63
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=97.18 E-value=0.007 Score=67.13 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=32.1
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccCc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKNP 147 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~P 147 (586)
-.+|+||..|+.|+||.++++.+++.. ...++||+||+.|
T Consensus 153 yPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~ 206 (499)
T PRK08654 153 YPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKP 206 (499)
T ss_pred CCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 479999999999999999999887631 2357888888643
No 64
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=97.18 E-value=0.0022 Score=67.02 Aligned_cols=49 Identities=22% Similarity=0.388 Sum_probs=37.3
Q ss_pred CceEEEcCCCCCC--CCceEEecCchhhhc------c---------chhhhhhhccCccccCCceeeeeEEE
Q psy11344 107 DNVWICKPVGQSQ--GRGILLFQRLSELVY------E---------SNAVVQQYVKNPLLIGGYKFDLRLYV 161 (586)
Q Consensus 107 ~~~wIvKP~~gs~--G~GI~l~~~~~~i~~------~---------~~~ivQ~YI~~PlLi~g~KFDlR~yv 161 (586)
+...||||..+++ |+|++++++.+++.. . ..++||+||. |..|.+=+|+
T Consensus 152 d~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~------G~ey~~d~F~ 217 (366)
T PRK13277 152 DRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVI------GAHFNFNYFY 217 (366)
T ss_pred CccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccC------CCEEEEEEEE
Confidence 4569999999999 999999999887642 1 3446999985 6666666654
No 65
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=97.16 E-value=0.0044 Score=67.91 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=30.8
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhcc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~ 145 (586)
-.+|+||..|+.|+|+.++++.+++.. ...++||+||+
T Consensus 153 ~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~ 204 (451)
T PRK08591 153 YPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLE 204 (451)
T ss_pred CCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 468999999999999999999887641 23478888886
No 66
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=97.13 E-value=0.0075 Score=66.57 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=23.5
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV 133 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~ 133 (586)
-.+|+||..|+.|+|+.++++.+++.
T Consensus 152 yPvvvKp~~ggGg~Gv~~v~~~~eL~ 177 (472)
T PRK07178 152 YPVMLKATSGGGGRGIRRCNSREELE 177 (472)
T ss_pred CcEEEEeCCCCCCCCceEeCCHHHHH
Confidence 46899999999999999999988874
No 67
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=97.08 E-value=0.0036 Score=70.53 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCC
Q psy11344 242 LWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGT 296 (586)
Q Consensus 242 ~~~~i~~~i~~~~~~~~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~ 296 (586)
+.+++++++.+.+.+. .|...+.+||.++++|++|++|||..|+.+.
T Consensus 248 ~~~~~~~~A~~~~~aL--------g~~Gv~~vEffv~~dG~v~v~EInpRpg~sG 294 (577)
T PLN02948 248 VAKLATDVAEKAVGSL--------EGAGVFGVELFLLKDGQILLNEVAPRPHNSG 294 (577)
T ss_pred HHHHHHHHHHHHHHHh--------CCCeEEEEEEEEcCCCcEEEEEEeCCCCCCC
Confidence 4455666555444433 2556789999999999999999999998643
No 68
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=97.07 E-value=0.0058 Score=63.67 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=41.2
Q ss_pred cccHHHHHHHHHHHHHhCCCCceeeccccCCccHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEecC
Q psy11344 54 CRKDQLTRYLKSMKKIFGSIYNFSPEAYNLPLEYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQR 128 (586)
Q Consensus 54 ~~K~~L~~~l~~~~~~~~~~~~~~P~T~~lp~e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~ 128 (586)
-.|..++..+++ .---+|+++.. ...++|.+++.+.. .+....++||..|..|+|..++..
T Consensus 106 ~dK~~~y~~~~~-------~~ipvp~~~~v-~t~~el~~a~~~l~------~~~~~~CvKP~~g~gg~GFr~l~~ 166 (329)
T PF15632_consen 106 DDKAAFYEFMEA-------NGIPVPPYWRV-RTADELKAAYEELR------FPGQPLCVKPAVGIGGRGFRVLDE 166 (329)
T ss_pred hhHHHHHHHHHh-------CCCCCCCEEEe-CCHHHHHHHHHhcC------CCCceEEEecccCCCcceEEEEcc
Confidence 355555555442 11256777654 45777777776532 246779999999999999999983
No 69
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=97.01 E-value=0.0022 Score=74.16 Aligned_cols=47 Identities=26% Similarity=0.559 Sum_probs=35.7
Q ss_pred ceEEEcCCCCCCCCceEEecC---chhhh--------ccchhhhhhhccCccccCCceeeeeEEEE
Q psy11344 108 NVWICKPVGQSQGRGILLFQR---LSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVC 162 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~---~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvl 162 (586)
-..|+||..|+.|+||.++++ .+++. ....++||+||. | -|+|+.|+
T Consensus 525 ~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~------G--~E~Rv~Vi 582 (752)
T PRK02471 525 KAIVVKPKSTNFGLGISIFKEPASLEDYEKALEIAFREDSSVLVEEFIV------G--TEYRFFVL 582 (752)
T ss_pred CCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHHHHhcCCcEEEEeccc------C--CEEEEEEE
Confidence 468999999999999999754 33332 235689999994 4 48898776
No 70
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=96.96 E-value=0.003 Score=76.27 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=38.5
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh----------ccchhhhhhhccCccccCCceeeeeEEE
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV----------YESNAVVQQYVKNPLLIGGYKFDLRLYV 161 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~----------~~~~~ivQ~YI~~PlLi~g~KFDlR~yv 161 (586)
-.+|+||..++.|+|+.++.+.+++. ...+++||+||+ +|+-+++.+++
T Consensus 705 yPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~-----~G~E~~Vd~l~ 763 (1050)
T TIGR01369 705 YPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLE-----DAVEVDVDAVS 763 (1050)
T ss_pred CCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCC-----CCeEEEEEEEE
Confidence 46899999999999999999988764 234689999996 36677766543
No 71
>PRK02186 argininosuccinate lyase; Provisional
Probab=96.92 E-value=0.0041 Score=73.86 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=37.9
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc---------cchhhhhhhccCccccCCceeeeeEEE
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY---------ESNAVVQQYVKNPLLIGGYKFDLRLYV 161 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~---------~~~~ivQ~YI~~PlLi~g~KFDlR~yv 161 (586)
-.+|+||..|+.|+|++++++.+++.. ...++||+||+ |.-|.+.+++
T Consensus 143 ~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~~~~~~~lvEEfI~------G~E~sVe~i~ 199 (887)
T PRK02186 143 YPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRRAGTRAALVQAYVE------GDEYSVETLT 199 (887)
T ss_pred CCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCcEEEeeccc------CCcEEEEEEE
Confidence 469999999999999999999887641 35789999995 5566666544
No 72
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=96.92 E-value=0.0024 Score=77.25 Aligned_cols=47 Identities=13% Similarity=0.248 Sum_probs=36.0
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc----------cchhhhhhhccCccccCCceeeeeE
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY----------ESNAVVQQYVKNPLLIGGYKFDLRL 159 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~----------~~~~ivQ~YI~~PlLi~g~KFDlR~ 159 (586)
-.+|+||..++.|+|+.++.+.+++.. ..+++||+||+.+ +-+++.+
T Consensus 705 yPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G~-----~E~sV~~ 761 (1066)
T PRK05294 705 YPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGA-----IEVDVDA 761 (1066)
T ss_pred CCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCCCC-----EEEEEEE
Confidence 469999999999999999999887641 3468899998632 1555554
No 73
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=96.79 E-value=0.0052 Score=67.00 Aligned_cols=49 Identities=10% Similarity=-0.116 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCC
Q psy11344 241 LLWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTA 293 (586)
Q Consensus 241 ~~~~~i~~~i~~~~~~~~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~ 293 (586)
.+.++|.+++..++.+....- .....++.++||+.+++ ||+||+|..++
T Consensus 246 ~~~~~i~~i~~~~~~~l~~~~---~~~~G~l~~~~~lt~~g-p~ViE~n~R~g 294 (435)
T PRK06395 246 DAPERAKHILNDIIRAMKDEN---NPFKGIMYGQFMDTPNG-VKVIEINARFA 294 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CceEEEEEEEEEEeCCC-cEEEEEeCCCC
Confidence 345666666666665554221 12345678999997555 99999998876
No 74
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=96.69 E-value=0.036 Score=57.12 Aligned_cols=30 Identities=13% Similarity=0.300 Sum_probs=23.3
Q ss_pred ceEEeeeeeecCC--CCeEEEcccCCCCCCCC
Q psy11344 268 FEFFGFDILVDSS--LNPWLLESQPDTAPGTN 297 (586)
Q Consensus 268 Fel~G~D~liD~~--~kpwLlEVN~~P~l~~~ 297 (586)
..+||||+++|.. ++.++|.||.-|+...-
T Consensus 263 L~LFgfDvI~~~~t~~~~~VIDINyFPgY~~v 294 (307)
T PF05770_consen 263 LTLFGFDVIRENGTGGRYYVIDINYFPGYKKV 294 (307)
T ss_dssp -SEEEEEEEEGCCT-SSEEEEEEEES--TTTS
T ss_pred cceeeeEEEEEcCCCCcEEEEEeccCCCccCC
Confidence 3589999999975 58999999999998653
No 75
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=96.66 E-value=0.032 Score=60.50 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=34.0
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccCc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKNP 147 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~P 147 (586)
-..|+||+.|+.|+|++++++.+++.. +..+++++||++|
T Consensus 153 yPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~ 206 (449)
T COG0439 153 YPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGP 206 (449)
T ss_pred CCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCC
Confidence 578999999999999999999988741 3458889999887
No 76
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=96.22 E-value=0.025 Score=68.62 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=30.7
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc----------cchhhhhhhcc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY----------ESNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~----------~~~~ivQ~YI~ 145 (586)
-..|+||..|..|+|+.++++.+++.. ...++||+||.
T Consensus 164 ~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~ 211 (1066)
T PRK05294 164 YPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLL 211 (1066)
T ss_pred CCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEccc
Confidence 468999999999999999999888642 23568888885
No 77
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=96.18 E-value=0.029 Score=67.85 Aligned_cols=38 Identities=18% Similarity=0.104 Sum_probs=30.9
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhcc----------chhhhhhhcc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVYE----------SNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~~----------~~~ivQ~YI~ 145 (586)
-..|+||..|..|+|+.++++.+++... ..++||+||.
T Consensus 163 yPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~ 210 (1050)
T TIGR01369 163 YPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPINQVLVEKSLA 210 (1050)
T ss_pred CCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEccc
Confidence 4689999999999999999998886421 4678888885
No 78
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=96.16 E-value=0.0083 Score=66.21 Aligned_cols=50 Identities=10% Similarity=0.119 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCC
Q psy11344 242 LWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTA 293 (586)
Q Consensus 242 ~~~~i~~~i~~~~~~~~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~ 293 (586)
..+++.+++..++.+....... .....+-.+||++++..|+|||+|...+
T Consensus 262 ~~~~~~~~v~~~l~al~~~~g~--~~~G~l~~elmlt~~~GP~vIE~n~R~G 311 (486)
T PRK05784 262 EYEEAVEIVKRTIDAIYKETGE--RYVGVISGQMMLTELWGPTVIEYYSRFG 311 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC--CcEEEEEEEEEEecCCCcEEEEEecccC
Confidence 4455556666666665543211 1124567799998344499999998877
No 79
>PLN02735 carbamoyl-phosphate synthase
Probab=96.04 E-value=0.015 Score=70.40 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=31.1
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc----------cchhhhhhhcc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY----------ESNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~----------~~~~ivQ~YI~ 145 (586)
-..|+||..++.|+|+.++++.+++.. ..+++||+||+
T Consensus 738 yPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~ 785 (1102)
T PLN02735 738 YPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLS 785 (1102)
T ss_pred CCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 468999999999999999999888641 23578888885
No 80
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=95.99 E-value=0.017 Score=55.56 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=31.2
Q ss_pred HHHHHHH-HHHHHHHHhhccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCC
Q psy11344 242 LWQRISS-IIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTA 293 (586)
Q Consensus 242 ~~~~i~~-~i~~~~~~~~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~ 293 (586)
+.++|.+ ++..++.+.... .-....++.+.+|++++| |++||.|...+
T Consensus 142 ~~~~i~~~I~~pt~~~l~~e---g~~y~GvLy~glMlt~~G-p~vlEfN~RfG 190 (194)
T PF01071_consen 142 LLEEIIEEILEPTLKGLKKE---GIPYRGVLYAGLMLTEDG-PKVLEFNVRFG 190 (194)
T ss_dssp HHHHHHHHTHHHHHHHHHHT---T---EEEEEEEEEEETTE-EEEEEEESSGS
T ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcceeeeeeeEEeCCC-cEEEEEeCCCC
Confidence 4455554 455555554432 234567899999999888 99999998743
No 81
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=95.93 E-value=0.032 Score=67.60 Aligned_cols=47 Identities=13% Similarity=0.253 Sum_probs=36.2
Q ss_pred CceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeE
Q psy11344 107 DNVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRL 159 (586)
Q Consensus 107 ~~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~ 159 (586)
+-.+|+||..++.|+|+.++.+.+++. ...+++||+||+ |.-+++-+
T Consensus 705 gyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~s~~~~vlIeefI~------G~E~~Vd~ 759 (1068)
T PRK12815 705 GYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENASQLYPILIDQFID------GKEYEVDA 759 (1068)
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhhcCCCCEEEEEeec------CceEEEEE
Confidence 357999999999999999999987764 235688888884 55555544
No 82
>PLN02735 carbamoyl-phosphate synthase
Probab=95.89 E-value=0.037 Score=67.04 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=29.0
Q ss_pred eEEEcCCCCCCCCceEEecCchhhhc----------cchhhhhhhcc
Q psy11344 109 VWICKPVGQSQGRGILLFQRLSELVY----------ESNAVVQQYVK 145 (586)
Q Consensus 109 ~wIvKP~~gs~G~GI~l~~~~~~i~~----------~~~~ivQ~YI~ 145 (586)
..|+||..++.|+|+.++++.+++.. ...++||+||.
T Consensus 182 PvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~ 228 (1102)
T PLN02735 182 PLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLL 228 (1102)
T ss_pred CEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 68999999999999999999888642 23456666664
No 83
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=95.78 E-value=0.11 Score=63.58 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=31.6
Q ss_pred CceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhcc
Q psy11344 107 DNVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVK 145 (586)
Q Consensus 107 ~~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~ 145 (586)
.-.+|+||..|+.|+|+.++++.+++.. ...++||+||+
T Consensus 150 gyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~ 202 (1201)
T TIGR02712 150 GYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVE 202 (1201)
T ss_pred CCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCC
Confidence 3579999999999999999999887641 23478888886
No 84
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=95.54 E-value=0.019 Score=62.07 Aligned_cols=66 Identities=23% Similarity=0.249 Sum_probs=46.8
Q ss_pred CCceeeccccCCc-------cHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEecCchhhh--------ccch
Q psy11344 73 IYNFSPEAYNLPL-------EYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLSELV--------YESN 137 (586)
Q Consensus 73 ~~~~~P~T~~lp~-------e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~ 137 (586)
+..++|-|..+.. +..++++.... ....||+||..+..|+||.+=...++-. ..++
T Consensus 306 I~~HvP~T~~l~~~~~~~~g~~~dL~~~~~a---------~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~~~~ 376 (445)
T PF14403_consen 306 IRRHVPWTRLLTAGRTTYQGEDVDLVEFAIA---------NRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAAREP 376 (445)
T ss_pred HHHhCCceEEEcCccccccccchhHHHHHHh---------chhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHhcCC
Confidence 4578999999976 33344433322 2478999999999999999865543311 2469
Q ss_pred hhhhhhccCc
Q psy11344 138 AVVQQYVKNP 147 (586)
Q Consensus 138 ~ivQ~YI~~P 147 (586)
||+|+|+.-+
T Consensus 377 yilQe~v~~~ 386 (445)
T PF14403_consen 377 YILQEYVRPP 386 (445)
T ss_pred cEEEEEecCC
Confidence 9999999843
No 85
>cd01709 RT_like_1 RT_like_1: A subfamily of reverse transcriptases (RTs). An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.
Probab=95.51 E-value=0.032 Score=57.90 Aligned_cols=81 Identities=5% Similarity=-0.141 Sum_probs=56.1
Q ss_pred CCeEeEEEEEccccCCccchHHHHHHHcccc----ccCcchhhhcccccCcee-cCCC-cCcccccCCCccccchhhHHH
Q psy11344 489 NKLSKEIFRKNEKQCDDELNFLLQTSLGMKT----EVNLSPALANDCEVDPAV-KKPM-LHDMFDLLGLPVCNTGLSLFT 562 (586)
Q Consensus 489 ~~~~~~v~lD~~KAFD~V~~~~L~~~L~~~G----~~~~~~~l~~~~~~~~~V-~~g~-~s~~f~~~g~~~~~~~~~~~~ 562 (586)
.....++-.||++=||+++|+.|+.+|+.+| ++.+++.++...-. . .+|. .......+|+|+++...|+++
T Consensus 19 ~G~~~vvd~Dik~fFdsIpH~~Lm~vL~~~~~~~~wL~li~r~L~APl~---~~~dg~~~~~r~r~rGtPqGgviSplLa 95 (346)
T cd01709 19 YGEVTVVQSDFKWFGPSLPHSTILAVLKFFGVPEKWLDFFKKFLEAPLR---FVADGPDAPPRIRKRGTPMSHALSDVFG 95 (346)
T ss_pred cCCEEEEEeehHhhCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhCcee---ecCCCCcccccccCCccCCCchhhHHHH
Confidence 4567899999999999999999999999988 33444444443322 3 2332 222234589999999999875
Q ss_pred HH-----HHhhhhcc
Q psy11344 563 LW-----TSLAQRHY 572 (586)
Q Consensus 563 ~~-----~~~~~~~~ 572 (586)
=+ |--..|+.
T Consensus 96 NiyL~~lD~~v~~~~ 110 (346)
T cd01709 96 ELVLFCLDFAVNQAT 110 (346)
T ss_pred HHHHHHHHHHHHhcC
Confidence 32 65555543
No 86
>KOG0369|consensus
Probab=95.47 E-value=0.078 Score=58.52 Aligned_cols=94 Identities=15% Similarity=0.186 Sum_probs=63.0
Q ss_pred eecc-cCCCCcccccHHHHHHHHHHHHHh-----------C-----------CCCceeeccccC---CccHHHHHHHHHH
Q psy11344 43 YTNH-IPKASSICRKDQLTRYLKSMKKIF-----------G-----------SIYNFSPEAYNL---PLEYTKLVAECSR 96 (586)
Q Consensus 43 ~vNh-~p~~~~l~~K~~L~~~l~~~~~~~-----------~-----------~~~~~~P~T~~l---p~e~~~~~~~~~~ 96 (586)
.|+- -||-..|+-...+++.....--.| | ..-..+|-|=-- -.|..+|.++|
T Consensus 106 ~vdavHPGYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~y-- 183 (1176)
T KOG0369|consen 106 NVDAVHPGYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEY-- 183 (1176)
T ss_pred CCCeecCCccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhc--
Confidence 3443 378888998888888776421111 1 123455555211 12344555554
Q ss_pred hhcccCCCCCCceEEEcCCCCCCCCceEEecCchhhh--------------ccchhhhhhhccCcc
Q psy11344 97 QARNSTYENPDNVWICKPVGQSQGRGILLFQRLSELV--------------YESNAVVQQYVKNPL 148 (586)
Q Consensus 97 ~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~~i~--------------~~~~~ivQ~YI~~Pl 148 (586)
.-..|+|.+.|..|||+.++++.+++. .+....|.++|++|-
T Consensus 184 ----------G~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPr 239 (1176)
T KOG0369|consen 184 ----------GLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPR 239 (1176)
T ss_pred ----------CCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcc
Confidence 456899999999999999999988764 246789999999884
No 87
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=95.17 E-value=0.1 Score=63.35 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=30.3
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc----------cchhhhhhhcc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY----------ESNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~----------~~~~ivQ~YI~ 145 (586)
-..|+||..+..|+|+.++++.+++.. ...++||+||.
T Consensus 164 yPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~ 211 (1068)
T PRK12815 164 FPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIA 211 (1068)
T ss_pred CCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccC
Confidence 468999999999999999999887642 13577777775
No 88
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=94.86 E-value=0.067 Score=58.31 Aligned_cols=42 Identities=14% Similarity=0.342 Sum_probs=36.0
Q ss_pred CceEEEcCCCCCCCCceEEecCchhhh--------------ccchhhhhhhccCcc
Q psy11344 107 DNVWICKPVGQSQGRGILLFQRLSELV--------------YESNAVVQQYVKNPL 148 (586)
Q Consensus 107 ~~~wIvKP~~gs~G~GI~l~~~~~~i~--------------~~~~~ivQ~YI~~Pl 148 (586)
.-..++|...|..|+|+.++.+.+++. .+...+|.||+++|-
T Consensus 152 GyPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PR 207 (645)
T COG4770 152 GYPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPR 207 (645)
T ss_pred CCcEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCc
Confidence 356899999999999999999988864 356899999999883
No 89
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=94.84 E-value=0.14 Score=48.75 Aligned_cols=95 Identities=18% Similarity=0.329 Sum_probs=56.9
Q ss_pred cccccHHHHHHHHHHHHHhC-CCCceeeccccCCccHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEecCch
Q psy11344 52 SICRKDQLTRYLKSMKKIFG-SIYNFSPEAYNLPLEYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLS 130 (586)
Q Consensus 52 ~l~~K~~L~~~l~~~~~~~~-~~~~~~P~T~~lp~e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~ 130 (586)
.++.|--++..|.+.+++.| +.++.++.||. |.-. +++ ..+.-..++|=...++|-|=..+++..
T Consensus 8 nf~dKpWvF~qLi~i~~~lG~e~FPLieQt~y-pnh~-em~------------s~~~fPvVvKvG~~h~G~GKvkv~n~~ 73 (203)
T PF02750_consen 8 NFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYY-PNHR-EML------------SAPRFPVVVKVGHAHAGMGKVKVDNQQ 73 (203)
T ss_dssp HTTSHHHHHHHHHHHHHHHHTTTS-B---EEE-SSGG-GGC------------S-SSSSEEEEESS-STTTTEEEE-SHH
T ss_pred hhcCCcHHHHHHHHHHHHhCCcccccceeeec-CChh-hhc------------cCCCCCEEEEEccccCceeEEEEccHH
Confidence 46788888888888887775 57899999974 4421 111 124567999999999999999999877
Q ss_pred hhhccc--hhhhhhhccC-ccccCCceeeeeEEEE
Q psy11344 131 ELVYES--NAVVQQYVKN-PLLIGGYKFDLRLYVC 162 (586)
Q Consensus 131 ~i~~~~--~~ivQ~YI~~-PlLi~g~KFDlR~yvl 162 (586)
++..-. -.+.+-|+.- |+. ..|+|||+--.
T Consensus 74 ~~qDi~sll~~~~~Y~T~EPfI--d~kyDirvqkI 106 (203)
T PF02750_consen 74 DFQDIASLLAITKDYATTEPFI--DAKYDIRVQKI 106 (203)
T ss_dssp HHHHHHHHHHHHTS-EEEEE-----EEEEEEEEEE
T ss_pred HHHHHHHHHHhcCceEEeeccc--cceeEEEEEEE
Confidence 664211 2233445532 433 68999998544
No 90
>cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.
Probab=94.82 E-value=0.0081 Score=55.99 Aligned_cols=66 Identities=14% Similarity=-0.015 Sum_probs=41.1
Q ss_pred EEccccCCccchHHHHHHHccccccCcchhhhcccccCceecCCCcC-cccccCCCccccchhhHHHHH
Q psy11344 497 RKNEKQCDDELNFLLQTSLGMKTEVNLSPALANDCEVDPAVKKPMLH-DMFDLLGLPVCNTGLSLFTLW 564 (586)
Q Consensus 497 lD~~KAFD~V~~~~L~~~L~~~G~~~~~~~l~~~~~~~~~V~~g~~s-~~f~~~g~~~~~~~~~~~~~~ 564 (586)
+|++++||+|+|+.|.++|...+.......+...... .+.+...+ ......|+||++...|+++-.
T Consensus 1 lDi~~fF~sI~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~GlpqG~~lS~~L~~~ 67 (158)
T cd01646 1 LDISNFYDSIYTHSLPWALHGKIKAKQLLKLLRLLGN--LLDLLLLSSQYGQTNGLPIGPLTSRFLANI 67 (158)
T ss_pred CchhhccCcchHHHHHHHHHhhhhhHhhhhhHHHHHH--HHHHHHHhccCCCCceEccCcchHHHHHHH
Confidence 5999999999999999999999822211111100000 01111111 223457999999999988766
No 91
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=94.29 E-value=0.44 Score=54.05 Aligned_cols=93 Identities=14% Similarity=0.160 Sum_probs=64.5
Q ss_pred cCCCCcccccHHHHHHHHHH-----------HHHhCC-----------CCceeeccccCCccHHHHHHHHHHhhcccCCC
Q psy11344 47 IPKASSICRKDQLTRYLKSM-----------KKIFGS-----------IYNFSPEAYNLPLEYTKLVAECSRQARNSTYE 104 (586)
Q Consensus 47 ~p~~~~l~~K~~L~~~l~~~-----------~~~~~~-----------~~~~~P~T~~lp~e~~~~~~~~~~~~~~~~~~ 104 (586)
.||-..|+--..+++....- ...+|+ .-+-+|.|=-.+..+++..+....
T Consensus 85 hPGYGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~-------- 156 (1149)
T COG1038 85 HPGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEE-------- 156 (1149)
T ss_pred cCCcccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHh--------
Confidence 47888888888887765431 112221 346788887666655554433322
Q ss_pred CCCceEEEcCCCCCCCCceEEecCchhhh--------------ccchhhhhhhccCcc
Q psy11344 105 NPDNVWICKPVGQSQGRGILLFQRLSELV--------------YESNAVVQQYVKNPL 148 (586)
Q Consensus 105 ~~~~~wIvKP~~gs~G~GI~l~~~~~~i~--------------~~~~~ivQ~YI~~Pl 148 (586)
..-..|+|-+.|..|||..++++.+++. .+....|.|||+||-
T Consensus 157 -~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pk 213 (1149)
T COG1038 157 -YGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPK 213 (1149)
T ss_pred -cCCcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcc
Confidence 2456899999999999999999988764 246788999999984
No 92
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=94.08 E-value=0.56 Score=45.94 Aligned_cols=40 Identities=15% Similarity=0.341 Sum_probs=29.7
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccCc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKNP 147 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~P 147 (586)
-..++||+.|..|+|+.++.+.+++.. ..++++.+||++|
T Consensus 39 yPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~ 92 (211)
T PF02786_consen 39 YPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGDGPVLIEKFIEGA 92 (211)
T ss_dssp SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSE
T ss_pred CceEEeecccccccccccccchhhhhhhhhhccccCccccccceEEEeeehhhh
Confidence 468999999999999999999888741 3466677777654
No 93
>KOG0238|consensus
Probab=93.92 E-value=0.21 Score=53.69 Aligned_cols=42 Identities=14% Similarity=0.292 Sum_probs=35.7
Q ss_pred CceEEEcCCCCCCCCceEEecCchhhh--------------ccchhhhhhhccCcc
Q psy11344 107 DNVWICKPVGQSQGRGILLFQRLSELV--------------YESNAVVQQYVKNPL 148 (586)
Q Consensus 107 ~~~wIvKP~~gs~G~GI~l~~~~~~i~--------------~~~~~ivQ~YI~~Pl 148 (586)
.-..++|+..|..|+|..+..+.+++. .+...++.|||+||-
T Consensus 148 gyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npR 203 (670)
T KOG0238|consen 148 GYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPR 203 (670)
T ss_pred CCcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCc
Confidence 456899999999999999999887753 356899999999993
No 94
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=93.46 E-value=0.13 Score=52.58 Aligned_cols=44 Identities=20% Similarity=0.316 Sum_probs=29.9
Q ss_pred CceEEEcCCCCCCCCceEEecCchhhhccchhhhhhhccCccccCCceeeee
Q psy11344 107 DNVWICKPVGQSQGRGILLFQRLSELVYESNAVVQQYVKNPLLIGGYKFDLR 158 (586)
Q Consensus 107 ~~~wIvKP~~gs~G~GI~l~~~~~~i~~~~~~ivQ~YI~~PlLi~g~KFDlR 158 (586)
....|+||..|+.|- +-++.--++.. ...+|.|+||+ |+++..-
T Consensus 149 ekt~IlKPv~GaGG~-~el~~~~Ee~~-~~~~i~Qefi~------G~p~Svs 192 (389)
T COG2232 149 EKTLILKPVSGAGGL-VELVKFDEEDP-PPGFIFQEFIE------GRPVSVS 192 (389)
T ss_pred ceeeEEeeccCCCce-eeecccccccC-CcceehhhhcC------CceeEEE
Confidence 467999999998885 33333323332 37899999996 6666543
No 95
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=92.84 E-value=0.34 Score=51.53 Aligned_cols=125 Identities=21% Similarity=0.225 Sum_probs=85.0
Q ss_pred eecccCCCCcccccHHHHHHHHHHHHHhCCCCceee--ccccC--CccHHHHHHHHHHhhcccCCCCCCceEEEcCCCCC
Q psy11344 43 YTNHIPKASSICRKDQLTRYLKSMKKIFGSIYNFSP--EAYNL--PLEYTKLVAECSRQARNSTYENPDNVWICKPVGQS 118 (586)
Q Consensus 43 ~vNh~p~~~~l~~K~~L~~~l~~~~~~~~~~~~~~P--~T~~l--p~e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs 118 (586)
.+| -||+..+-.|..+.= +-.|.+.+......+| +||.. |++....++.. ...++||..++
T Consensus 312 iaN-A~GtGV~ddka~~~y-~P~~~~~ylge~~lL~nv~T~~c~~~~el~~VL~~l-------------~~lViK~~~~~ 376 (488)
T COG2308 312 IAN-ALGTGVADDKALYAY-VPQMIEYYLGEEPLLPNVPTYWCGEPDELEHVLANL-------------SELVIKPVEGS 376 (488)
T ss_pred Eec-CCCcCcccchhHHHH-HHHHHHHHcccccccCCCCeeecCCHHHHHHHHhch-------------hhheEeeeccC
Confidence 456 679998888876654 5566665543333333 46666 56666666654 45689999999
Q ss_pred CCCceEEecCchhh---------h-ccchhhhhhhcc---CccccC----CceeeeeEEEEEeeccCcEEEEEccCeeee
Q psy11344 119 QGRGILLFQRLSEL---------V-YESNAVVQQYVK---NPLLIG----GYKFDLRLYVCVPSFHPLTIFVYREGLARF 181 (586)
Q Consensus 119 ~G~GI~l~~~~~~i---------~-~~~~~ivQ~YI~---~PlLi~----g~KFDlR~yvlv~s~~pl~~y~~~~g~~R~ 181 (586)
.|=|..+=-..++- . ....||.|+-++ -|..++ .|..|+|+|++.+ +-.+++.-+|+.|+
T Consensus 377 gg~~~lvGpa~s~~e~a~~~~~i~a~p~~~IaQ~~~~lST~Pt~v~~~l~pr~vdlR~f~~~~---~~~~~v~pGGLtRV 453 (488)
T COG2308 377 GGYGMLVGPAASKAELAAFAERIKADPENYIAQPVLQLSTVPTFVDGGLAPRHVDLRPFALAD---RDGVQVMPGGLTRV 453 (488)
T ss_pred CCCcceeccccCHHHHHHHHHHHHhChhhhcccccccccccceEECCeeccccccceeEEEEc---CCceEEcccceeee
Confidence 88777764433321 1 246788887664 244454 4678999999987 45589999999999
Q ss_pred ecCC
Q psy11344 182 GTDK 185 (586)
Q Consensus 182 a~~~ 185 (586)
+...
T Consensus 454 al~~ 457 (488)
T COG2308 454 ALRE 457 (488)
T ss_pred eecC
Confidence 9773
No 96
>KOG4768|consensus
Probab=92.46 E-value=0.24 Score=54.36 Aligned_cols=161 Identities=15% Similarity=0.043 Sum_probs=95.1
Q ss_pred CCCCCchHHHHHhchhhhHHHHHHHHHHHHhCCCCCcccccc--eeeecCCCCCCCCCCCcCCCchhHHhhccccCCCce
Q psy11344 380 PGSDEITSELLKKGGSTIKEELHKLITKCWKEEIIPNKWKER--KPLFHNTARTFRSSKQSNKWGNGKDWSKIEPNEGNW 457 (586)
Q Consensus 380 pG~DgI~~~~lk~~~~~l~~~L~~lfn~~~~~g~~P~~Wk~a--~~I~K~k~~~~~~RPIsll~~i~Ki~~kii~~~r~~ 457 (586)
|-.||+...+|......+ + ++.| .+.-+ ++|||+.++ .||-+..++--|++-.++ +...
T Consensus 264 ~tldgmni~yLnKls~sL---~---------t~~F--kf~p~rrv~i~k~sGG---~RplsvgnpRDklvQe~m--Rm~L 324 (796)
T KOG4768|consen 264 PTLDGMNIDYLNKLSQSL---L---------TAAF--KFEPARRVPIPKFSGG---ERPLSVGNPRDKLVQECM--RMGL 324 (796)
T ss_pred CCccchhHHHHHhhHHHh---h---------hhhe--eccccceeecCccCCC---cCcccCCChhHHHHHHHH--HHHH
Confidence 557888877776544221 1 1211 12233 677776442 266667777676654443 1111
Q ss_pred eee-cC-CCCCCCCC----chhh-HHHHHHHHHHHHHcCCeEeEEEEEccccCCccchHHHHHHHc----cccccCcchh
Q psy11344 458 TRI-YP-YTYPDQTD----NVDS-DKALRNIAFNVAKFNKLSKEIFRKNEKQCDDELNFLLQTSLG----MKTEVNLSPA 526 (586)
Q Consensus 458 ~~i-~~-~~~~~q~~----s~~~-i~~l~~~i~~~~~~~~~~~~v~lD~~KAFD~V~~~~L~~~L~----~~G~~~~~~~ 526 (586)
..+ .+ +....+++ +|.+ +..+++++..| ...+-.|++|-||+|+|+.|+..|. .+|++.++-.
T Consensus 325 eiiy~~~fst~shgfRpglSc~tAi~~~~n~f~gc------nw~ie~DLkkcfdtIphd~LI~eL~~rIkdk~fidL~~k 398 (796)
T KOG4768|consen 325 EIIYGGEFSTVSHGFRPGLSCKTAILKTHNLFRGC------NWFIEVDLKKCFDTIPHDELIIELQKRIKDKGFIDLNYK 398 (796)
T ss_pred HHHhcceeeeeecccCCCchhhHHHHHHHHHhhcc------ceEEechHHHHhccccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 111 11 22223332 5655 66666666543 3468899999999999999998887 4558888877
Q ss_pred hhcccccCceecCCCcCcccccCCCccccchhhHHHHH--HHhhhh
Q psy11344 527 LANDCEVDPAVKKPMLHDMFDLLGLPVCNTGLSLFTLW--TSLAQR 570 (586)
Q Consensus 527 l~~~~~~~~~V~~g~~s~~f~~~g~~~~~~~~~~~~~~--~~~~~~ 570 (586)
+.+.-+. .. |+.. -.+.+|.||++.-.|++... +-|-+|
T Consensus 399 ll~AGy~--te-n~ry--~~~~lGtpqgsvvspil~nifL~~LDk~ 439 (796)
T KOG4768|consen 399 LLRAGYT--TE-NARY--HVEFLGTPQGSVVSPILCNIFLRELDKR 439 (796)
T ss_pred HHhcCcc--cc-ccce--ecccccccccccCCchhHHHHHHHHHHH
Confidence 7776666 11 2222 25678999999988876543 444433
No 97
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=92.02 E-value=1.5 Score=46.77 Aligned_cols=48 Identities=10% Similarity=0.024 Sum_probs=32.6
Q ss_pred hHHHHHHH-HHHHHHHHHhhccCCCCCCcceEEeeeeeecCCCCeEEEcccCC
Q psy11344 240 WLLWQRIS-SIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPD 291 (586)
Q Consensus 240 ~~~~~~i~-~~i~~~~~~~~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~ 291 (586)
..+.+++. +++..|+...... . .....++=.-+||+.+| |.+||.|..
T Consensus 240 ~e~~~~~~~~Iv~ptv~gm~~E-G--~~f~GvLy~glMlt~~G-PkViEfN~R 288 (428)
T COG0151 240 DEVVERAVEEIVEPTVEGMAKE-G--YPFRGVLYAGLMLTADG-PKVIEFNAR 288 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-C--CCceEEEEeEEEEcCCC-cEEEEEecc
Confidence 34556665 7777777776654 1 22233444579999999 999999986
No 98
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=91.81 E-value=3.4 Score=39.07 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=29.1
Q ss_pred ceEEEc-CCCCCCCCceEEecCchhhhc------cchhhhhhhcc
Q psy11344 108 NVWICK-PVGQSQGRGILLFQRLSELVY------ESNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvK-P~~gs~G~GI~l~~~~~~i~~------~~~~ivQ~YI~ 145 (586)
-..|+| +..|.-|+|-+++++.+++.. ..++|++++|.
T Consensus 29 ~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~ 73 (172)
T PF02222_consen 29 FPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVP 73 (172)
T ss_dssp SSEEEEESSSSCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE---
T ss_pred CCEEEEccCcCcCCCccEEECCHHHHHHHHHhcCCCcEEEEeccC
Confidence 578999 677999999999999988752 46788888884
No 99
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=90.69 E-value=0.96 Score=46.19 Aligned_cols=48 Identities=23% Similarity=0.432 Sum_probs=37.9
Q ss_pred CceEEEcCCCCCCCCceEEecCchhhhc------------cchhhhhhhccCccccCCceeeeeEEEEE
Q psy11344 107 DNVWICKPVGQSQGRGILLFQRLSELVY------------ESNAVVQQYVKNPLLIGGYKFDLRLYVCV 163 (586)
Q Consensus 107 ~~~wIvKP~~gs~G~GI~l~~~~~~i~~------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv 163 (586)
.-..++||.++|.|+|-.++++.+++.. ..+.||..+| +||+-+-+|.
T Consensus 149 GfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv---------~fd~EiTlLt 208 (394)
T COG0027 149 GFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFV---------KFDFEITLLT 208 (394)
T ss_pred CCCeecccccccCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEe---------cceEEEEEEE
Confidence 4568999999999999999999998862 2456666666 6888887764
No 100
>KOG2158|consensus
Probab=85.26 E-value=0.29 Score=52.07 Aligned_cols=50 Identities=34% Similarity=0.701 Sum_probs=42.5
Q ss_pred CCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCccccccccccccccCCccccccc
Q psy11344 265 KNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDLRLGTWNVQTLHKPGAFDNLIM 321 (586)
Q Consensus 265 ~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~~d~~~~nv~~~k~~~~~d~l~~ 321 (586)
.-||+.+|+|++. +..+||++|+|..|++.++...+ ..++.......|..
T Consensus 12 ~v~~~~~~~~~~~-~~~~~w~~~~~~~p~~~~~~~~~------~~~~r~~~~~~l~~ 61 (565)
T KOG2158|consen 12 SVCFEVLGFDILL-RKLKPWLLEINRAPSFGTDQKID------YDVKRGVLLNALKL 61 (565)
T ss_pred eeehHhhhhhhhh-hhcccccchhhcCCCCCCCcCcc------hhhhhhhhhhcccc
Confidence 4699999999999 99999999999999999999988 77776655555543
No 101
>KOG3895|consensus
Probab=83.20 E-value=3.8 Score=42.40 Aligned_cols=102 Identities=18% Similarity=0.306 Sum_probs=65.7
Q ss_pred ecccCCCCcccccHHHHHHHHHHHHHhC-CCCceeeccccCCccHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCc
Q psy11344 44 TNHIPKASSICRKDQLTRYLKSMKKIFG-SIYNFSPEAYNLPLEYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRG 122 (586)
Q Consensus 44 vNh~p~~~~l~~K~~L~~~l~~~~~~~~-~~~~~~P~T~~lp~e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~G 122 (586)
||-.-..+.+|.|-.+..-|.++-+..| +.+..+|.|| +|. ++++- ..+.-..+||=..+..|.|
T Consensus 189 vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~-yPn--HK~m~-----------s~~tyPvVVkvghahsGmG 254 (488)
T KOG3895|consen 189 VNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTF-YPN--HKEML-----------SQPTYPVVVKVGHAHSGMG 254 (488)
T ss_pred cchhHHHHHhccchHHHHHHHHHHHhcCccccccceeee-cCC--chhhc-----------cCCCCcEEEEecccccccc
Confidence 3333334678899999988888877776 7889999997 455 22211 1123568999999999999
Q ss_pred eEEecCchhhhccch--hhhhhhccCccccCCceeeeeEE
Q psy11344 123 ILLFQRLSELVYESN--AVVQQYVKNPLLIGGYKFDLRLY 160 (586)
Q Consensus 123 I~l~~~~~~i~~~~~--~ivQ~YI~~PlLi~g~KFDlR~y 160 (586)
=.-+++-.++..-.. .+.+-|.+---.| .-|+|||+-
T Consensus 255 KiKV~Nh~dfqDi~svval~~Tyat~epFi-DaKYDiriQ 293 (488)
T KOG3895|consen 255 KIKVENHEDFQDIASVVALTKTYATAEPFI-DAKYDIRIQ 293 (488)
T ss_pred eeeecchhhhHhHHHHHHHHhhhhhccccc-cccceeehh
Confidence 888888776542111 1223444321112 368999983
No 102
>cd01648 TERT TERT: Telomerase reverse transcriptase (TERT). Telomerase is a ribonucleoprotein (RNP) that synthesizes telomeric DNA repeats. The telomerase RNA subunit provides the template for synthesis of these repeats. The catalytic subunit of RNP is known as telomerase reverse transcriptase (TERT). The reverse transcriptase (RT) domain is located in the C-terminal region of the TERT polypeptide. Single amino acid substitutions in this region lead to telomere shortening and senescence. Telomerase is an enzyme that, in certain cells, maintains the physical ends of chromosomes (telomeres) during replication. In somatic cells, replication of the lagging strand requires the continual presence of an RNA primer approximately 200 nucleotides upstream, which is complementary to the template strand. Since there is a region of DNA less than 200 base pairs from the end of the chromosome where this is not possible, the chromosome is continually shortened. However, a surplus of repetitive DNA at
Probab=75.09 E-value=1.8 Score=38.14 Aligned_cols=33 Identities=18% Similarity=0.075 Sum_probs=26.5
Q ss_pred EEccccCCccchHHHHHHHccccccCcchhhhcccccCceecCCCcCcccccCCCccccchhhHHHHH
Q psy11344 497 RKNEKQCDDELNFLLQTSLGMKTEVNLSPALANDCEVDPAVKKPMLHDMFDLLGLPVCNTGLSLFTLW 564 (586)
Q Consensus 497 lD~~KAFD~V~~~~L~~~L~~~G~~~~~~~l~~~~~~~~~V~~g~~s~~f~~~g~~~~~~~~~~~~~~ 564 (586)
.|+.+|||+|+| ......|+||+...+|+++-.
T Consensus 1 ~d~~~~~~~~~~-----------------------------------~~~~~~GlpQG~~lSp~L~nl 33 (119)
T cd01648 1 TDIKKCYDSIPQ-----------------------------------YYRQKVGIPQGSPLSSLLCSL 33 (119)
T ss_pred CChHHhccchhh-----------------------------------hhhhcCcccCCcchHHHHHHH
Confidence 388999999999 123457999999999988765
No 103
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=73.71 E-value=22 Score=38.03 Aligned_cols=27 Identities=26% Similarity=0.065 Sum_probs=23.7
Q ss_pred CceEEEcCCCCCCCCceEEecCchhhh
Q psy11344 107 DNVWICKPVGQSQGRGILLFQRLSELV 133 (586)
Q Consensus 107 ~~~wIvKP~~gs~G~GI~l~~~~~~i~ 133 (586)
.-..|+||..+..|.|-.++.+.+++.
T Consensus 150 g~PvIVrP~~~lGG~G~~i~~n~eel~ 176 (400)
T COG0458 150 GYPVIVKPSFGLGGSGGGIAYNEEELE 176 (400)
T ss_pred CCCEEEecCcCCCCCceeEEeCHHHHH
Confidence 346999999999999999999988875
No 104
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=60.67 E-value=14 Score=42.07 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=32.7
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh-------ccchhhhhhhccCccccCC
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV-------YESNAVVQQYVKNPLLIGG 152 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~-------~~~~~ivQ~YI~~PlLi~g 152 (586)
..|+.||..|-.|.+|.++..-.... ....+|.|+|..-| .++|
T Consensus 528 ~~yV~KPi~GREG~nV~i~~~~g~~~~~~~g~y~~~~~IyQ~~~~LP-~f~~ 578 (619)
T PRK10507 528 TGYAVKPIAGRCGSNIDLVSHQEEVLDKTSGKFAEQKNIYQQLWCLP-KVDG 578 (619)
T ss_pred CCeEeccCCCcCCCCEEEEeCCCcEeeccCCCCCCCCeEEEEeccCc-ccCC
Confidence 35999999999999999997622211 24679999999866 3444
No 105
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=59.92 E-value=8.1 Score=41.56 Aligned_cols=44 Identities=27% Similarity=0.354 Sum_probs=34.0
Q ss_pred eEEEcCCCCCCCCceEEecCchhhh------ccchhhhhhhccCccccCCc
Q psy11344 109 VWICKPVGQSQGRGILLFQRLSELV------YESNAVVQQYVKNPLLIGGY 153 (586)
Q Consensus 109 ~wIvKP~~gs~G~GI~l~~~~~~i~------~~~~~ivQ~YI~~PlLi~g~ 153 (586)
.|+.||..|-.|.+|.++..-..+. ....+|.|+|++-| -++|+
T Consensus 309 ~yV~KPi~gREG~nV~i~~~g~~~~~~~g~y~~~~~IyQ~~~~Lp-~f~g~ 358 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEYGGESEDTDGNYAEEPRVVQQLIEWG-RFDGC 358 (397)
T ss_pred CEEeccCCCcCCCCEEEEECCeEEeccCCCCCCCCeEEEEccCCc-ccCCc
Confidence 5999999999999999996632221 24789999999866 45665
No 106
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=58.52 E-value=24 Score=37.00 Aligned_cols=40 Identities=18% Similarity=0.412 Sum_probs=32.0
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh-------ccchhhhhhhccCc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV-------YESNAVVQQYVKNP 147 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~-------~~~~~ivQ~YI~~P 147 (586)
..|+.||..|-.|.+|.++....+.. ....+|.|+|.+-|
T Consensus 297 ~~yv~KPl~gREGaNv~i~~~~~~~~~~~~G~Yg~eg~IyQe~~~Lp 343 (387)
T COG0754 297 ESYVRKPLFGREGANVSIFEDAGKVLDKADGPYGEEGMIYQEFYPLP 343 (387)
T ss_pred hhhhccccccccCCCeeEEecCCceeecCCCCccccchhhhhhccCc
Confidence 34899999999999999997743322 35789999999865
No 107
>KOG1005|consensus
Probab=57.97 E-value=9.3 Score=44.13 Aligned_cols=28 Identities=14% Similarity=-0.122 Sum_probs=25.7
Q ss_pred CCeEeEEEEEccccCCccchHHHHHHHc
Q psy11344 489 NKLSKEIFRKNEKQCDDELNFLLQTSLG 516 (586)
Q Consensus 489 ~~~~~~v~lD~~KAFD~V~~~~L~~~L~ 516 (586)
++.++.+.+|++||||+|+++.|+..++
T Consensus 516 ~~~LYfvk~DV~~cfDtIpqd~l~~II~ 543 (888)
T KOG1005|consen 516 NQKLYFVKADVSKCFDTIPQDELISIIR 543 (888)
T ss_pred cCceEEEEEEhhhhhccCchHHHHHHHH
Confidence 4579999999999999999999999985
No 108
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=57.44 E-value=44 Score=34.56 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=21.1
Q ss_pred EEeeeeeecCC-CCeEEEcccCCCC
Q psy11344 270 FFGFDILVDSS-LNPWLLESQPDTA 293 (586)
Q Consensus 270 l~G~D~liD~~-~kpwLlEVN~~P~ 293 (586)
-|-||+-++.+ .++||||+|.--.
T Consensus 216 ~~v~DVyi~~~~~~v~LID~NPf~~ 240 (299)
T PF07065_consen 216 NYVFDVYITRDKDKVWLIDFNPFGP 240 (299)
T ss_pred CEEEEEEEcCCCCeEEEEEecCCcc
Confidence 38899999999 9999999998654
No 109
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=56.26 E-value=8.5 Score=40.30 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=19.8
Q ss_pred cceEEeeeeeecCCCCeEEEcccCCC
Q psy11344 267 CFEFFGFDILVDSSLNPWLLESQPDT 292 (586)
Q Consensus 267 ~Fel~G~D~liD~~~kpwLlEVN~~P 292 (586)
...++|+|+..|.+|++|+||.|++.
T Consensus 67 ~~~~~g~Dl~r~~dG~w~VleDn~~~ 92 (330)
T PF04174_consen 67 RLHFYGADLVRDPDGRWRVLEDNTRA 92 (330)
T ss_dssp S-SEEEEEEEE-SSS-EEEEEEE-SS
T ss_pred EEEEEEEeeeECCCCCEEEEEecCCC
Confidence 35589999999999999999999963
No 110
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=55.31 E-value=47 Score=34.42 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcceEEeeeeeecCCCCeEEEcccCC
Q psy11344 242 LWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPD 291 (586)
Q Consensus 242 ~~~~i~~~i~~~~~~~~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~ 291 (586)
+.+++-++..+.+.+....++ ++--.-|.+-.++++++..++.||-..
T Consensus 267 LL~~vfe~ger~V~a~kel~~--PG~iGpFcLq~~~t~dl~~vVfevS~R 314 (361)
T COG1759 267 LLPKVFEMGERFVEATKELVP--PGIIGPFCLQTIVTDDLEFVVFEVSAR 314 (361)
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CCcccceeeeeeecCCccEEEEEEecc
Confidence 445666666666666666665 222334677789999999999998543
No 111
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=54.49 E-value=50 Score=34.93 Aligned_cols=140 Identities=16% Similarity=0.177 Sum_probs=83.1
Q ss_pred CcccccHHHHHHHHHHHHHhCCCC---ceeeccc--cCC--------------ccHHHHHHHHHHhhcccCCCCCCceEE
Q psy11344 51 SSICRKDQLTRYLKSMKKIFGSIY---NFSPEAY--NLP--------------LEYTKLVAECSRQARNSTYENPDNVWI 111 (586)
Q Consensus 51 ~~l~~K~~L~~~l~~~~~~~~~~~---~~~P~T~--~lp--------------~e~~~~~~~~~~~~~~~~~~~~~~~wI 111 (586)
+.--||..-+..+.+..+.|.+.. +|+--.| ... ...+.+++..++..+.... +.+...|
T Consensus 183 W~~RrKS~hF~~Y~~va~eF~~~~~IDPWlInp~f~~c~~vdF~~~~G~e~lA~~Vd~~L~kir~KY~eYgI-~e~PfVi 261 (403)
T TIGR02049 183 WHSRRKSNHFEAYQEVASEFAKLIGIDPWLINPYFEKCDGIDFDDREGEDALATAVDQVLSKTQKKYEEYGI-HTQPYVI 261 (403)
T ss_pred cccccccchhHHHHHHHHHHHHHhCCCcccccHhhhccCCcCCCccccHHHHHHHHHHHHHHHHHHHHHcCC-CCCCeEE
Confidence 445577777777777777765321 1221111 110 1123334444332222222 2457899
Q ss_pred EcCCCCCCCCceEEecCchhhhc-----------------cchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEE
Q psy11344 112 CKPVGQSQGRGILLFQRLSELVY-----------------ESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVY 174 (586)
Q Consensus 112 vKP~~gs~G~GI~l~~~~~~i~~-----------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~ 174 (586)
+|..+|.-|.||+-+++.+++.. -...|||+.|..==.+++.-- .|+ +|+.
T Consensus 262 VKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T~E~~~~avA-----------EPV-VYmi 329 (403)
T TIGR02049 262 VKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFEMFNEAVA-----------EPV-VYMI 329 (403)
T ss_pred EEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcceeeeeCCccc-----------Cce-EEEE
Confidence 99999999999999999888741 146899998852112232211 232 3433
Q ss_pred c----cCeeeeecCCCCCCCCCCCCcccccccc
Q psy11344 175 R----EGLARFGTDKFSLANLDNPFAHLTNSSL 203 (586)
Q Consensus 175 ~----~g~~R~a~~~y~~~~~~~~~~HLTN~~i 203 (586)
. +|+-|+-+..=.-+|++...||.--.+.
T Consensus 330 d~~vvggfYRvh~~Rg~dENLNapG~~F~plaf 362 (403)
T TIGR02049 330 GRTVTGGFYRVHTGRGVDENLNAPGMHFVPLSF 362 (403)
T ss_pred CCEEeEEEEEecCCCCCcccCCCCCCeeeeccc
Confidence 3 6788998888777888888888766553
No 112
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=53.92 E-value=20 Score=37.94 Aligned_cols=155 Identities=16% Similarity=0.143 Sum_probs=76.0
Q ss_pred CceecccC-CCCcccccHHHHHHHHHHHHHhCCCC---cee--ecccc---C----C-------ccHHHHHHHHHHhhcc
Q psy11344 41 NQYTNHIP-KASSICRKDQLTRYLKSMKKIFGSIY---NFS--PEAYN---L----P-------LEYTKLVAECSRQARN 100 (586)
Q Consensus 41 ~q~vNh~p-~~~~l~~K~~L~~~l~~~~~~~~~~~---~~~--P~T~~---l----p-------~e~~~~~~~~~~~~~~ 100 (586)
.|.+.-=+ ..+.--||..-++.+.+..+.|.+.. +|+ |..-. + . +..+.+++..++..+.
T Consensus 175 eQ~vlPpl~~GW~~RrKS~HF~~Y~~va~eFa~~~~IDPWlInp~f~~c~~vdF~~~~G~~~La~~Vd~lL~kir~KY~e 254 (404)
T PF08886_consen 175 EQYVLPPLHAGWFNRRKSNHFKAYDEVAKEFAKLIGIDPWLINPYFEQCGGVDFQEREGEECLASAVDQLLAKIRKKYKE 254 (404)
T ss_dssp SSEEES---TTGGGS-TTHHHHHHHHHHHHHHHHHT--GGGG---EEEEE---TTSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCccccchhhhhccchhHHHHHHHHHHHHhcCCCccccccchhccCCccCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 45554322 33455688888888887777765321 111 11111 1 0 1123344444332221
Q ss_pred cCCCCCCceEEEcCCCCCCCCceEEecCchhhhc-----------------cchhhhhhhccCccccCCceeeeeEEEEE
Q psy11344 101 STYENPDNVWICKPVGQSQGRGILLFQRLSELVY-----------------ESNAVVQQYVKNPLLIGGYKFDLRLYVCV 163 (586)
Q Consensus 101 ~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~~i~~-----------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv 163 (586)
... +.+...|||..+|.-|.||+-+++.+++.. -...|||+.|..=-.+++..-.==+|++-
T Consensus 255 ygI-~e~PfV~VKAD~GTYGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmid 333 (404)
T PF08886_consen 255 YGI-KEKPFVFVKADAGTYGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVYTFERFNDAVAEPVVYMID 333 (404)
T ss_dssp HT---S---EEEEEE-GGG-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE-----EEETTEEEEEEEEEET
T ss_pred cCC-CCCceEEEEcCCCCCCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcchhhhhCCccccceEEEEC
Confidence 111 235789999999999999999999988741 24689999996433345543333333321
Q ss_pred eeccCcEEEEEccCeeeeecCCCCCCCCCCCCccccccccc
Q psy11344 164 PSFHPLTIFVYREGLARFGTDKFSLANLDNPFAHLTNSSLN 204 (586)
Q Consensus 164 ~s~~pl~~y~~~~g~~R~a~~~y~~~~~~~~~~HLTN~~i~ 204 (586)
. | .-+|+-|+-++.=.-+|++...||..-.+..
T Consensus 334 ~-------~-vvggfyRvh~~rg~deNLNapGm~F~plaf~ 366 (404)
T PF08886_consen 334 R-------Y-VVGGFYRVHTERGVDENLNAPGMHFVPLAFE 366 (404)
T ss_dssp T-------E-EEEEEEEEES--STTTTTS--TT-EEEEE--
T ss_pred C-------E-EEEEEEEecCCCCCccCCCCCCCEeeecccc
Confidence 0 1 1267889998887778898888887766543
No 113
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=46.57 E-value=6.4 Score=41.24 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=36.2
Q ss_pred eecccCCCCcccccHHHHHHHHHHHHHh-CC--CCceeeccccCC-ccHHHHHHHHHHhhcccCCCCCCceEEEcCCCCC
Q psy11344 43 YTNHIPKASSICRKDQLTRYLKSMKKIF-GS--IYNFSPEAYNLP-LEYTKLVAECSRQARNSTYENPDNVWICKPVGQS 118 (586)
Q Consensus 43 ~vNh~p~~~~l~~K~~L~~~l~~~~~~~-~~--~~~~~P~T~~lp-~e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs 118 (586)
.+ +-||+..+-.|..+.-. -+|.+.+ ++ ...=+|.+|.-. .+.+...+.. ..|++||..++
T Consensus 234 ia-Na~G~gv~edkal~~~l-p~~~r~~LgeellL~~VpT~~cg~~~~~~~Vl~~l-------------~~lvvKp~~g~ 298 (330)
T PF04174_consen 234 IA-NAPGSGVAEDKALYAFL-PRMIRYYLGEELLLPNVPTWWCGDPEDREYVLANL-------------DELVVKPADGY 298 (330)
T ss_dssp EE-S-TTTHHHHSTTTGGGH-HHHHHHHH-S--SSEE---EETTSHHHHHHHHHSG-------------GGEEEEE----
T ss_pred EE-CCCccchhcchhHHHHh-HHHHHHHcCCCcccCCCCcEeCCCHHHHHHHHhch-------------hhcEEEecCCC
Confidence 44 47899888888876543 5555443 43 234466666553 3444444432 67999999999
Q ss_pred CCCceEEecCch
Q psy11344 119 QGRGILLFQRLS 130 (586)
Q Consensus 119 ~G~GI~l~~~~~ 130 (586)
.|+|+.+-.+.+
T Consensus 299 gg~~~~~G~~~s 310 (330)
T PF04174_consen 299 GGKGVYIGPKLS 310 (330)
T ss_dssp ----EEEGGG--
T ss_pred CCCcceeCCcCC
Confidence 999999876665
No 114
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=39.60 E-value=14 Score=37.64 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=21.7
Q ss_pred EEeeeeeec-CCCCeEEEcccCCCCCC
Q psy11344 270 FFGFDILVD-SSLNPWLLESQPDTAPG 295 (586)
Q Consensus 270 l~G~D~liD-~~~kpwLlEVN~~P~l~ 295 (586)
+.-+||-.| .+|.--|+|||..|.-.
T Consensus 265 lvevefK~D~RDGs~KlldvNpRpw~w 291 (415)
T COG3919 265 LVEVEFKYDPRDGSYKLLDVNPRPWRW 291 (415)
T ss_pred eEEEEEEecCCCCceeEEeecCCCcce
Confidence 467888888 58999999999999753
No 115
>KOG2983|consensus
Probab=37.54 E-value=1.1e+02 Score=30.81 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=19.7
Q ss_pred EEeeeeeecCCCCeEEEcccCC
Q psy11344 270 FFGFDILVDSSLNPWLLESQPD 291 (586)
Q Consensus 270 l~G~D~liD~~~kpwLlEVN~~ 291 (586)
-|-||+-++..+|+|||.+|.-
T Consensus 230 dfvfDVYi~k~~kv~lID~Npf 251 (334)
T KOG2983|consen 230 DFVFDVYITKERKVWLIDFNPF 251 (334)
T ss_pred CeeEEEEecCCCcEEEEeccCc
Confidence 3889999999999999999864
No 116
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=36.63 E-value=30 Score=31.03 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=21.7
Q ss_pred EEeeeeeecCCCCeEEEcccCCCCC
Q psy11344 270 FFGFDILVDSSLNPWLLESQPDTAP 294 (586)
Q Consensus 270 l~G~D~liD~~~kpwLlEVN~~P~l 294 (586)
-|.+||.+.++|+..|+|+|..=+.
T Consensus 94 ~~vlDvg~~~~G~~~lVE~N~~~~s 118 (130)
T PF14243_consen 94 AYVLDVGVTDDGGWALVEANDGWSS 118 (130)
T ss_pred eEEEEEEEeCCCCEEEEEecCcccc
Confidence 4899999999999999999975444
No 117
>PF05614 DUF782: Circovirus protein of unknown function (DUF782); InterPro: IPR008500 This family consists of porcine and bovine circovirus ORF3 proteins of unknown function.
Probab=26.16 E-value=16 Score=29.20 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=21.1
Q ss_pred CCCcCcccccCCCccccchhhHHHH
Q psy11344 539 KPMLHDMFDLLGLPVCNTGLSLFTL 563 (586)
Q Consensus 539 ~g~~s~~f~~~g~~~~~~~~~~~~~ 563 (586)
-..+|+||+++|..+|....|..|.
T Consensus 5 pplvsrwfpicgfrvckisspfaft 29 (104)
T PF05614_consen 5 PPLVSRWFPICGFRVCKISSPFAFT 29 (104)
T ss_pred cchhhhhccccceEEEeecCCceec
Confidence 4678999999999999988887664
No 118
>KOG2599|consensus
Probab=25.88 E-value=2.3e+02 Score=28.82 Aligned_cols=80 Identities=19% Similarity=0.368 Sum_probs=51.1
Q ss_pred CCCCceecccCC---CCcccccHHHHHHHHHHHHHhCCCCceeeccccCCcc-HHHHHHHHHHhhcccCCCCCCceEEEc
Q psy11344 38 LKNNQYTNHIPK---ASSICRKDQLTRYLKSMKKIFGSIYNFSPEAYNLPLE-YTKLVAECSRQARNSTYENPDNVWICK 113 (586)
Q Consensus 38 l~~~q~vNh~p~---~~~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~lp~e-~~~~~~~~~~~~~~~~~~~~~~~wIvK 113 (586)
+..=|.-||--. ....++-..|...+..........|+.+=.-|.=.-. ++...+-..+. .+.+++-.|++-
T Consensus 43 insVqFSNHtGY~~~kG~~~~~~eL~dL~egl~~nn~~~Y~~vLTGY~~n~~~l~~i~~iv~~l----k~~np~~~wv~D 118 (308)
T KOG2599|consen 43 INSVQFSNHTGYAHVKGQVLNEEELEDLYEGLLLNNLNKYDAVLTGYLPNVSFLQKIADIVKKL----KKKNPNLTWVCD 118 (308)
T ss_pred ccceeeccccCCccccccccCHHHHHHHHHHHhhccccccceeeeeccCChhHHHHHHHHHHHH----HhcCCCeEEEeC
Confidence 345577787432 2345677788888877776666778877776643323 23333333222 235677889999
Q ss_pred CCCCCCCC
Q psy11344 114 PVGQSQGR 121 (586)
Q Consensus 114 P~~gs~G~ 121 (586)
|..|..|+
T Consensus 119 PVmGDnG~ 126 (308)
T KOG2599|consen 119 PVMGDNGR 126 (308)
T ss_pred ccccCCcc
Confidence 99999887
No 119
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=24.27 E-value=45 Score=34.15 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.2
Q ss_pred EeeeeeecCCCCeEEEcccCCCC
Q psy11344 271 FGFDILVDSSLNPWLLESQPDTA 293 (586)
Q Consensus 271 ~G~D~liD~~~kpwLlEVN~~P~ 293 (586)
=.|||.|..+.+.|+||||.-=+
T Consensus 196 KrFDFvi~~~~k~y~IE~NFY~~ 218 (286)
T PF04556_consen 196 KRFDFVIKTNKKIYLIETNFYGS 218 (286)
T ss_pred eEEEEEEEcCCEEEEEEEeeecC
Confidence 36899999999999999998655
No 120
>KOG0782|consensus
Probab=20.12 E-value=89 Score=34.68 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=42.5
Q ss_pred CceeeccccCCcc-HHHHHHHHHHhhc---------ccCCCCCCceEEEcCCCCCCCCceEEecCchhhhccchhhhhhh
Q psy11344 74 YNFSPEAYNLPLE-YTKLVAECSRQAR---------NSTYENPDNVWICKPVGQSQGRGILLFQRLSELVYESNAVVQQY 143 (586)
Q Consensus 74 ~~~~P~T~~lp~e-~~~~~~~~~~~~~---------~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~~i~~~~~~ivQ~Y 143 (586)
.-++|+||+|... -+.-+++-++..+ .....+....||+||..+---+-..+|-+...-..++..++|-+
T Consensus 309 avivPPTWIlr~~~pqnslkaskkkkRtsfkRKasKkg~ee~k~rpFvikPtsSplmkPLLVFVNPKSGGNqGsK~lq~f 388 (1004)
T KOG0782|consen 309 AVIVPPTWILRLANPQNSLKASKKKKRTSFKRKASKKGHEENKGRPFVIKPTSSPLMKPLLVFVNPKSGGNQGSKALQTF 388 (1004)
T ss_pred eeecCchHheeecCccchhhhhhhcccCchhhhhhhccchhccCCceEEccCCCCCCCceEEEecCCCCCcchHHHHHHH
Confidence 4689999999331 1111111111111 11123445689999998888888888877666555667788864
Q ss_pred c
Q psy11344 144 V 144 (586)
Q Consensus 144 I 144 (586)
.
T Consensus 389 ~ 389 (1004)
T KOG0782|consen 389 C 389 (1004)
T ss_pred H
Confidence 3
Done!