Query psy11344
Match_columns 586
No_of_seqs 448 out of 2298
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 16:01:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tig_A TTL protein; ATP-grAsp, 100.0 5.4E-64 1.9E-68 522.3 15.9 281 1-296 23-343 (380)
2 2q7d_A Inositol-tetrakisphosph 98.7 1.6E-07 5.6E-12 97.5 14.2 104 43-162 104-214 (346)
3 1i7n_A Synapsin II; synapse, p 98.6 8.8E-08 3E-12 97.6 10.2 123 107-295 152-285 (309)
4 4eg0_A D-alanine--D-alanine li 98.6 2.2E-07 7.4E-12 95.3 11.0 138 108-300 147-292 (317)
5 1iow_A DD-ligase, DDLB, D-ALA\ 98.5 1.7E-07 5.8E-12 95.1 9.7 135 108-298 139-281 (306)
6 1pk8_A RAT synapsin I; ATP bin 98.5 2.5E-07 8.4E-12 97.3 10.6 124 107-296 264-398 (422)
7 2p0a_A Synapsin-3, synapsin II 98.5 3.4E-07 1.2E-11 94.5 9.9 121 107-295 169-302 (344)
8 3i12_A D-alanine-D-alanine lig 98.4 1.2E-06 4.3E-11 91.6 12.8 141 108-300 180-328 (364)
9 3se7_A VANA; alpha-beta struct 98.4 7.5E-07 2.6E-11 92.5 10.7 145 108-300 166-318 (346)
10 1e4e_A Vancomycin/teicoplanin 98.4 6.9E-07 2.4E-11 92.6 10.2 143 108-298 166-316 (343)
11 1z2n_X Inositol 1,3,4-trisphos 98.4 6.5E-07 2.2E-11 91.8 9.6 89 53-162 96-188 (324)
12 4fu0_A D-alanine--D-alanine li 98.4 5.6E-07 1.9E-11 94.0 9.0 51 242-300 275-325 (357)
13 2i87_A D-alanine-D-alanine lig 98.4 9.6E-07 3.3E-11 92.4 10.8 138 108-298 172-317 (364)
14 3k3p_A D-alanine--D-alanine li 98.4 5.6E-07 1.9E-11 94.9 8.8 140 108-300 202-349 (383)
15 3e5n_A D-alanine-D-alanine lig 98.4 1.3E-06 4.3E-11 92.3 11.1 141 108-300 199-347 (386)
16 1uc8_A LYSX, lysine biosynthes 98.3 3.4E-07 1.2E-11 91.4 5.7 85 53-162 86-184 (280)
17 3r5x_A D-alanine--D-alanine li 98.3 8E-07 2.8E-11 90.4 7.8 47 108-162 134-188 (307)
18 2fb9_A D-alanine:D-alanine lig 98.3 2E-06 6.7E-11 88.5 10.2 48 108-163 151-207 (322)
19 3tqt_A D-alanine--D-alanine li 98.3 1.5E-06 5.1E-11 91.3 9.4 137 110-300 183-329 (372)
20 2r85_A PURP protein PF1517; AT 98.3 1.6E-06 5.6E-11 88.9 8.5 50 243-295 242-291 (334)
21 3ax6_A Phosphoribosylaminoimid 98.2 4.6E-06 1.6E-10 87.5 11.1 129 108-296 133-266 (380)
22 1ehi_A LMDDL2, D-alanine:D-lac 98.2 5.1E-06 1.8E-10 87.3 11.3 145 108-299 175-328 (377)
23 3k5i_A Phosphoribosyl-aminoimi 98.1 1.3E-05 4.4E-10 85.0 12.3 50 108-164 161-217 (403)
24 3q2o_A Phosphoribosylaminoimid 98.1 1.4E-05 4.9E-10 84.1 12.1 38 108-145 148-192 (389)
25 1gsa_A Glutathione synthetase; 98.1 3.8E-06 1.3E-10 85.2 7.1 69 76-162 134-214 (316)
26 3lwb_A D-alanine--D-alanine li 98.1 4.7E-06 1.6E-10 87.5 7.6 146 108-300 189-343 (373)
27 2pvp_A D-alanine-D-alanine lig 98.1 7.8E-06 2.7E-10 85.6 8.9 38 108-145 186-231 (367)
28 3ouz_A Biotin carboxylase; str 98.0 4.9E-05 1.7E-09 81.5 14.2 50 108-164 157-220 (446)
29 2z04_A Phosphoribosylaminoimid 98.0 7.3E-06 2.5E-10 85.5 6.5 50 108-164 127-184 (365)
30 1ulz_A Pyruvate carboxylase N- 98.0 4.6E-05 1.6E-09 81.8 13.0 50 108-164 152-215 (451)
31 4dim_A Phosphoribosylglycinami 97.9 2.5E-05 8.5E-10 82.5 9.8 48 108-161 145-202 (403)
32 3orq_A N5-carboxyaminoimidazol 97.9 4.5E-05 1.5E-09 80.1 11.6 49 108-163 146-201 (377)
33 3ln6_A Glutathione biosynthesi 97.9 1.6E-05 5.5E-10 90.4 8.4 48 107-162 520-578 (750)
34 2vpq_A Acetyl-COA carboxylase; 97.9 5.9E-05 2E-09 80.9 12.5 50 108-164 152-215 (451)
35 4e4t_A Phosphoribosylaminoimid 97.9 4.6E-05 1.6E-09 81.2 10.9 37 109-145 173-216 (419)
36 1kjq_A GART 2, phosphoribosylg 97.8 7.7E-05 2.6E-09 78.3 11.7 50 108-164 149-210 (391)
37 2ip4_A PURD, phosphoribosylami 97.8 4.1E-05 1.4E-09 81.3 9.7 48 108-163 137-194 (417)
38 3vot_A L-amino acid ligase, BL 97.8 3.4E-05 1.2E-09 82.2 8.9 47 108-160 146-211 (425)
39 2pn1_A Carbamoylphosphate synt 97.7 2.8E-05 9.6E-10 79.7 6.0 38 108-145 150-191 (331)
40 2yw2_A Phosphoribosylamine--gl 97.7 6E-05 2.1E-09 80.2 8.5 38 108-145 138-189 (424)
41 2xcl_A Phosphoribosylamine--gl 97.7 9.6E-05 3.3E-09 78.5 10.0 48 108-163 138-199 (422)
42 2yrx_A Phosphoribosylglycinami 97.7 6.7E-05 2.3E-09 80.6 8.8 48 108-163 159-220 (451)
43 3aw8_A PURK, phosphoribosylami 97.7 8E-05 2.7E-09 77.7 9.0 50 108-164 132-188 (369)
44 3mjf_A Phosphoribosylamine--gl 97.7 4.7E-05 1.6E-09 81.4 7.0 48 108-163 143-204 (431)
45 3lp8_A Phosphoribosylamine-gly 97.7 9E-05 3.1E-09 79.5 9.1 38 108-145 159-210 (442)
46 2dwc_A PH0318, 433AA long hypo 97.7 0.00013 4.5E-09 77.7 10.4 38 108-145 157-206 (433)
47 3df7_A Putative ATP-grAsp supe 97.6 7.6E-05 2.6E-09 76.0 7.9 44 107-163 133-176 (305)
48 2w70_A Biotin carboxylase; lig 97.6 0.00033 1.1E-08 75.1 13.1 50 108-164 154-217 (449)
49 1w96_A ACC, acetyl-coenzyme A 97.6 0.00066 2.3E-08 74.8 14.8 38 108-145 235-282 (554)
50 3glk_A Acetyl-COA carboxylase 97.6 0.00031 1.1E-08 77.1 11.7 130 108-295 229-368 (540)
51 3jrx_A Acetyl-COA carboxylase 97.6 0.00035 1.2E-08 77.2 12.0 130 108-295 245-384 (587)
52 2qk4_A Trifunctional purine bi 97.5 0.00016 5.3E-09 77.7 8.0 48 108-163 164-226 (452)
53 3t7a_A Inositol pyrophosphate 97.5 0.00015 5.1E-09 72.6 7.1 206 21-299 60-297 (330)
54 2dzd_A Pyruvate carboxylase; b 97.5 0.001 3.4E-08 71.5 14.4 50 108-164 158-221 (461)
55 3u9t_A MCC alpha, methylcroton 97.4 0.00019 6.6E-09 80.9 7.4 129 108-294 179-321 (675)
56 3eth_A Phosphoribosylaminoimid 97.4 0.0013 4.5E-08 68.3 12.6 38 108-145 115-157 (355)
57 3vmm_A Alanine-anticapsin liga 97.4 0.00045 1.5E-08 74.7 9.4 40 108-147 175-234 (474)
58 1vkz_A Phosphoribosylamine--gl 97.2 0.00068 2.3E-08 71.8 9.1 50 242-295 244-293 (412)
59 3n6r_A Propionyl-COA carboxyla 97.2 0.00041 1.4E-08 78.3 6.7 50 108-164 153-216 (681)
60 3ln7_A Glutathione biosynthesi 97.1 0.00059 2E-08 77.5 7.1 48 107-162 525-584 (757)
61 1a9x_A Carbamoyl phosphate syn 97.0 0.0018 6.2E-08 76.8 10.4 50 108-164 164-223 (1073)
62 1a9x_A Carbamoyl phosphate syn 96.9 0.0027 9.4E-08 75.3 11.1 38 108-145 710-757 (1073)
63 3n6x_A Putative glutathionylsp 96.9 0.00032 1.1E-08 74.9 2.5 125 42-185 308-453 (474)
64 2qf7_A Pyruvate carboxylase pr 96.8 0.0027 9.2E-08 75.7 9.6 50 108-164 172-235 (1165)
65 2r7k_A 5-formaminoimidazole-4- 96.6 0.0048 1.6E-07 64.1 8.7 50 244-295 269-318 (361)
66 4ffl_A PYLC; amino acid, biosy 96.6 0.002 7E-08 66.7 5.7 39 107-145 125-164 (363)
67 3hbl_A Pyruvate carboxylase; T 96.4 0.0047 1.6E-07 73.5 8.0 40 108-147 156-209 (1150)
68 3va7_A KLLA0E08119P; carboxyla 96.3 0.011 3.9E-07 70.5 10.7 50 108-164 181-244 (1236)
69 2pbz_A Hypothetical protein; N 96.1 0.0055 1.9E-07 62.5 5.6 38 107-145 125-167 (320)
70 2cqy_A Propionyl-COA carboxyla 95.2 0.0085 2.9E-07 50.1 2.5 39 108-146 46-98 (108)
71 3kyl_A Telomerase reverse tran 94.9 0.033 1.1E-06 59.1 6.5 70 489-564 242-319 (596)
72 2io8_A Bifunctional glutathion 85.5 0.71 2.4E-05 51.0 5.2 75 51-147 493-574 (619)
73 2vob_A Trypanothione synthetas 76.3 1.5 5.3E-05 48.6 3.7 75 51-147 508-589 (652)
74 3k1t_A Glutamate--cysteine lig 60.7 13 0.00045 38.1 6.3 145 50-203 202-382 (432)
75 1wr2_A Hypothetical protein PH 47.0 5.5 0.00019 38.0 1.0 38 108-145 57-117 (238)
76 2dk8_A DNA-directed RNA polyme 36.0 37 0.0013 26.7 4.0 64 363-430 11-76 (81)
77 4e9m_A Nucleotide-binding olig 34.1 3.2 0.00011 36.4 -2.7 29 280-308 105-133 (144)
78 4dbg_B Ring finger protein 31; 21.6 91 0.0031 27.7 4.3 44 358-408 25-68 (162)
No 1
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=100.00 E-value=5.4e-64 Score=522.29 Aligned_cols=281 Identities=28% Similarity=0.524 Sum_probs=208.3
Q ss_pred CcccCC-cEEecCCCCCCCCCeEEEeccCCC-Cchhhcc-CCCCceecccCCCCcccccHHHHHHHHHHHHHhCCCCcee
Q psy11344 1 VCVERG-WREYDCNSLKDNNNWNLWWRTSGF-PVSHYKQ-LKNNQYTNHIPKASSICRKDQLTRYLKSMKKIFGSIYNFS 77 (586)
Q Consensus 1 ~~~~~g-w~~~~~~~~~~~~~~~l~W~~~~~-~~~~~~~-l~~~q~vNh~p~~~~l~~K~~L~~~l~~~~~~~~~~~~~~ 77 (586)
||+++| |+|+..++ .+|||+|++... |...+.. ..++|+||||||++.||||+.|+++|+++ +..+..++|+
T Consensus 23 vL~~~g~w~ev~~~~----~~~dl~W~~~~~~p~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~-~~~~~~~~f~ 97 (380)
T 3tig_A 23 ILLASGQWKRLKRDN----PKFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTS-PELTETCTWF 97 (380)
T ss_dssp HHHHTTSEEECCTTC----SCCSEEECCSSSCCGGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHC-HHHHTTCTTS
T ss_pred HHHhcCCeEEeCCCC----CceeEEEecCCCCCHHHhccCCCcceEEeecCCcccccccHHHHHHHHHh-hhcccccCcC
Confidence 477899 99998763 689999998643 2222222 25789999999999999999999999995 4566789999
Q ss_pred eccccC-Cc-----------------------cHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEecCchhhh
Q psy11344 78 PEAYNL-PL-----------------------EYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLSELV 133 (586)
Q Consensus 78 P~T~~l-p~-----------------------e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~~i~ 133 (586)
|+||.| |. |+.+|++++.+... .+.++.||+||.++++|+||.++++.+++.
T Consensus 98 P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~----~~~~~~wI~KP~~~srG~GI~l~~~~~~i~ 173 (380)
T 3tig_A 98 PESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKE----NEEGNVWIAKSSSGAKGEGILISSDATELL 173 (380)
T ss_dssp CCEEECCC------------------------CCHHHHHHHHHHHH----TTCCCCEEEEESCC----CCBCCSCSHHHH
T ss_pred CcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhh----cCCCCeEEEeCCccCCCCCEEEeCCHHHHH
Confidence 999999 75 45678888876532 356799999999999999999999999874
Q ss_pred -----ccchhhhhhhccCcccc--CCceeeeeEEEEEeeccCcEEEEEccCeeeeecCCCCCCCCCCCCccccccccccC
Q psy11344 134 -----YESNAVVQQYVKNPLLI--GGYKFDLRLYVCVPSFHPLTIFVYREGLARFGTDKFSLANLDNPFAHLTNSSLNKL 206 (586)
Q Consensus 134 -----~~~~~ivQ~YI~~PlLi--~g~KFDlR~yvlv~s~~pl~~y~~~~g~~R~a~~~y~~~~~~~~~~HLTN~~i~k~ 206 (586)
....+|||+||+||+|| +|+|||||+||+||| ||++|+|++|++|||+++|+.+++++.++||||+++||+
T Consensus 174 ~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts--~l~vy~y~~g~~Rfa~~~y~~~~~~~~~~HLTN~~iqk~ 251 (380)
T 3tig_A 174 DFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSDTNFQDMTSHLTNHCIQKE 251 (380)
T ss_dssp HHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT--TCCEEECSCCEEEECC-----------------------
T ss_pred HHHhccCCcEEEEecccCceeecCCCceeEEEEEEEEcC--CCEEEEEcCCEEEecCCCcCccchhhhhhhccccccccc
Confidence 34689999999999999 999999999999997 999999999999999999999999999999999999996
Q ss_pred -CCCCCCcccccCCccccCHHHHHHHHHhc-CCc-hhHHHHHHHHHHHHHHHHhhccCCC---CCCcceEEeeeeeecCC
Q psy11344 207 -GPGYGTTKERVGSGCKWSLSQLRQYLYQN-NIQ-DWLLWQRISSIIVLTIASELSAIPQ---TKNCFEFFGFDILVDSS 280 (586)
Q Consensus 207 -~~~~~~~~~~~~~g~~~s~~~l~~~l~~~-~~~-~~~~~~~i~~~i~~~~~~~~~~~~~---~~~~Fel~G~D~liD~~ 280 (586)
+++|... +.|++|++++|.+||++. +.+ ...+|++|+++|..++.|+++.+.. ..+|||+||+|||||++
T Consensus 252 ~~~~y~~~----~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~a~~~~i~~~~~~~~~FEl~G~D~lid~~ 327 (380)
T 3tig_A 252 HSKNYGRY----EEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKYLPYHSFQLFGFDFMVDKN 327 (380)
T ss_dssp ---------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHHHHHHHHCCTTSSSEECEEEEEEEEEBTT
T ss_pred cccccccc----cCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEeEEEEEcCC
Confidence 4667643 358899999999999875 333 2468999999999999998876643 36899999999999999
Q ss_pred CCeEEEcccCCCCCCC
Q psy11344 281 LNPWLLESQPDTAPGT 296 (586)
Q Consensus 281 ~kpwLlEVN~~P~l~~ 296 (586)
++|||||||++|++..
T Consensus 328 l~~wllEVN~~P~~~q 343 (380)
T 3tig_A 328 LKVWLIEVNGAPACAQ 343 (380)
T ss_dssp CCEEEEEEESSCCCCT
T ss_pred CcEEEEEEeCCCCccH
Confidence 9999999999999974
No 2
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=98.68 E-value=1.6e-07 Score=97.55 Aligned_cols=104 Identities=13% Similarity=0.239 Sum_probs=69.2
Q ss_pred eecccCCCCcccccHHHHHHHHHHHHHhCCCCceeeccccCCc----cHHHHHHHHHHhhcccCCCCCCceEEEcCCC--
Q psy11344 43 YTNHIPKASSICRKDQLTRYLKSMKKIFGSIYNFSPEAYNLPL----EYTKLVAECSRQARNSTYENPDNVWICKPVG-- 116 (586)
Q Consensus 43 ~vNh~p~~~~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~lp~----e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~-- 116 (586)
.+|...+...+..|..+.+.|.+........---+|+|+.+.. +..+.+... +-.-.+|+||..
T Consensus 104 vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~----------~lg~P~VvKP~~g~ 173 (346)
T 2q7d_A 104 VLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKN----------GLTFPFICKTRVAH 173 (346)
T ss_dssp EESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHT----------TCCSSEEEECSBCS
T ss_pred EcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhc----------CCCCCEEEEecCCC
Confidence 5565555556778888888887653222222345899988864 333332211 123579999975
Q ss_pred CCCCCceEEecCchhhh-ccchhhhhhhccCccccCCceeeeeEEEE
Q psy11344 117 QSQGRGILLFQRLSELV-YESNAVVQQYVKNPLLIGGYKFDLRLYVC 162 (586)
Q Consensus 117 gs~G~GI~l~~~~~~i~-~~~~~ivQ~YI~~PlLi~g~KFDlR~yvl 162 (586)
|+.|+|+.++.+.+++. ...+++||+||+. +| .|+|+||+
T Consensus 174 Gs~s~~v~~v~~~~~l~~~~~~~lvQefI~~----~G--~dirv~Vv 214 (346)
T 2q7d_A 174 GTNSHEMAIVFNQEGLNAIQPPCVVQNFINH----NA--VLYKVFVV 214 (346)
T ss_dssp STTCCEEEEECSGGGTTC--CCEEEEECCCC----TT--EEEEEEEE
T ss_pred cceeeeeEEecCHHHHHhcCCCEEEEEeeCC----CC--eEEEEEEE
Confidence 45588999999988775 3567999999974 34 79999996
No 3
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=98.63 E-value=8.8e-08 Score=97.64 Aligned_cols=123 Identities=11% Similarity=0.127 Sum_probs=78.8
Q ss_pred CceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCe
Q psy11344 107 DNVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGL 178 (586)
Q Consensus 107 ~~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~ 178 (586)
+-..|+||..|++|+|+.++++.+++. ....+++|+||. ..+|+|++|+=. ++ + ++
T Consensus 152 g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~-------~g~DiRv~VvGg-----~v-~---a~ 215 (309)
T 1i7n_A 152 TFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFID-------AKYDIRVQKIGN-----NY-K---AY 215 (309)
T ss_dssp CSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-------EEEEEEEEEETT-----EE-E---EE
T ss_pred CCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhccCCeEEEEeecC-------CCceEEEEEECC-----EE-E---EE
Confidence 358999999999999999999987653 134566999996 269999999822 21 1 34
Q ss_pred eeeecC-CCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Q psy11344 179 ARFGTD-KFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASE 257 (586)
Q Consensus 179 ~R~a~~-~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~ 257 (586)
.|.+.. .|. ||.+ +..+. ... .+ ++.++++.++..+
T Consensus 216 ~Rr~~~g~wr-----------tN~~----~~~~e----------~~~------------l~-----~e~~~la~~A~~a- 252 (309)
T 1i7n_A 216 MRTSISGNWK-----------TNTG----SAMLE----------QIA------------MS-----DRYKLWVDACSEM- 252 (309)
T ss_dssp EEESSCTTTS-----------CSCC----CSSEE----------EEC------------CC-----HHHHHHHHHHTTG-
T ss_pred EEEcCCCCCe-----------ecCC----cceee----------ecC------------CC-----HHHHHHHHHHHHH-
Confidence 565532 221 3431 00000 001 11 2344443333222
Q ss_pred hccCCCCCCcceEEeeeeeecCCCCeEEEcccC--CCCCC
Q psy11344 258 LSAIPQTKNCFEFFGFDILVDSSLNPWLLESQP--DTAPG 295 (586)
Q Consensus 258 ~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~--~P~l~ 295 (586)
+ ....++|+|++.+.+|+++++|||+ +|++.
T Consensus 253 ---~----gGldi~GVDll~~~~g~~~V~EVN~~~~P~~~ 285 (309)
T 1i7n_A 253 ---F----GGLDICAVKAVHGKDGKDYIFEVMDCSMPLIG 285 (309)
T ss_dssp ---G----GCCSEEEEEEEEETTSCEEEEEEECTTCCCCS
T ss_pred ---h----CCCCEEEEEEEEcCCCCEEEEEECCCCCCCcc
Confidence 1 1246899999999999999999999 99997
No 4
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=98.56 E-value=2.2e-07 Score=95.35 Aligned_cols=138 Identities=12% Similarity=0.145 Sum_probs=72.9
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCee
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLA 179 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~ 179 (586)
-.+|+||..++.|+|+.++++.+++. ....++||+||+. | .++++.|+.....|.......+++.
T Consensus 147 ~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~i~~-----G--~E~~v~vl~~~~~~~~~i~~~~~~~ 219 (317)
T 4eg0_A 147 LPLFVKPASEGSSVAVLKVKTADALPAALSEAATHDKIVIVEKSIEG-----G--GEYTACIAGDLDLPLIKIVPAGEFY 219 (317)
T ss_dssp SCEEEEECC-----CCEEECSGGGHHHHHHHHTTTCSEEEEEECCCS-----S--EEEEEEEETTCCCCCEEEEC-----
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCC-----C--cEEEEEEECCcccceEEEeeCCcee
Confidence 46899999999999999999988764 2467899999962 4 3566665532211211110000000
Q ss_pred eeecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhc
Q psy11344 180 RFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELS 259 (586)
Q Consensus 180 R~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~~ 259 (586)
. |. .+ |.... .+.... ... .....+++.+++.+.+.+
T Consensus 220 ~-----~~-----------~k---------~~~g~----~~~~~P----------~~l-~~~~~~~l~~~a~~~~~~--- 256 (317)
T 4eg0_A 220 D-----YH-----------AK---------YVAND----TQYLIP----------CGL-PAEQETELKRIARRAFDV--- 256 (317)
T ss_dssp ---------------------------------------CEEESS----------CSS-CHHHHHHHHHHHHHHHHT---
T ss_pred c-----hh-----------hc---------ccCCC----eeEEcC----------CCC-CHHHHHHHHHHHHHHHHH---
Confidence 0 00 00 00000 000000 001 112345565555444432
Q ss_pred cCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCcc
Q psy11344 260 AIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDL 300 (586)
Q Consensus 260 ~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~~ 300 (586)
+ +|....++||++|++|+||+||||..|++...+-+
T Consensus 257 -l----g~~G~~~vD~~~~~~g~~~vlEiN~~pg~t~~s~~ 292 (317)
T 4eg0_A 257 -L----GCTDWGRADFMLDAAGNAYFLEVNTAPGMTDHSLP 292 (317)
T ss_dssp -T----TCCSEEEEEEEECTTCCEEEEEEESSCCCSTTSHH
T ss_pred -h----CCCceEEEEEEEeCCCCEEEEEeeCCCCCCcccHH
Confidence 2 23357899999999999999999999999876554
No 5
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=98.55 E-value=1.7e-07 Score=95.13 Aligned_cols=135 Identities=11% Similarity=0.176 Sum_probs=78.7
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCee
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLA 179 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~ 179 (586)
-.+|+||..|+.|+|+.++++.+++. ....++||+||+ |+ ++|+.++ . . +++ +.+
T Consensus 139 ~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~------g~--e~~v~~~-~---g-~~~----~~~ 201 (306)
T 1iow_A 139 LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS------GP--EFTVAIL-G---E-EIL----PSI 201 (306)
T ss_dssp SSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTTTCSEEEEEECCC------CC--EEEEEEE-T---T-EEC----CCE
T ss_pred CCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhCCCEEEEeCcC------CE--EEEEEEE-C---C-Ccc----ceE
Confidence 47999999999999999999887764 246789999996 43 6777766 2 1 111 111
Q ss_pred eeecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhc
Q psy11344 180 RFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELS 259 (586)
Q Consensus 180 R~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~~ 259 (586)
+....+ .. +..-+|+... +.+.... ... ...+.+++.+++.+.+.+.
T Consensus 202 ~~~~~~----~~---~~~~~~~~~g-------------~~~~~~p----------~~l-~~~~~~~i~~~a~~~~~~l-- 248 (306)
T 1iow_A 202 RIQPSG----TF---YDYEAKFLSD-------------ETQYFCP----------AGL-EASQEANLQALVLKAWTTL-- 248 (306)
T ss_dssp EEECSS----SS---SCHHHHHTCS-------------CCEEESS----------CCC-CHHHHHHHHHHHHHHHHHH--
T ss_pred EEEeCC----Ce---EchhheecCC-------------CeeEEcC----------CCC-CHHHHHHHHHHHHHHHHHc--
Confidence 111110 00 0000111100 0000000 000 1224456666555544433
Q ss_pred cCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCC
Q psy11344 260 AIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNK 298 (586)
Q Consensus 260 ~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~ 298 (586)
++...+|+||++|++|+||+||||..|+....+
T Consensus 249 ------g~~G~~~vD~~~~~~g~~~~iEiN~rpg~~~~s 281 (306)
T 1iow_A 249 ------GCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHS 281 (306)
T ss_dssp ------TCCSEEEEEEEECTTSCEEEEEEESSCCCSTTC
T ss_pred ------CCceEEEEEEEEcCCCCEEEEEecCCCCCCCCC
Confidence 234578999999999999999999999987543
No 6
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=98.53 E-value=2.5e-07 Score=97.33 Aligned_cols=124 Identities=11% Similarity=0.106 Sum_probs=80.1
Q ss_pred CceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCe
Q psy11344 107 DNVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGL 178 (586)
Q Consensus 107 ~~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~ 178 (586)
.-..|+||..|++|+|+.++++.+++. ....+++|+||. ..+|||++|+=. ++ + ++
T Consensus 264 g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~-------~g~DIRv~VVGg-----~v-v---a~ 327 (422)
T 1pk8_A 264 TYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFID-------AKYDVRVQKIGQ-----NY-K---AY 327 (422)
T ss_dssp SSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCC-------EEEEEEEEEETT-----EE-E---EE
T ss_pred CCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhccCceEEEEeecC-------CCceEEEEEECC-----EE-E---EE
Confidence 347999999999999999999987654 124466899996 269999999822 21 1 35
Q ss_pred eeeecC-CCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Q psy11344 179 ARFGTD-KFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASE 257 (586)
Q Consensus 179 ~R~a~~-~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~ 257 (586)
.|.+.. .|. ||.. +..+. ... . -+++++++.++..+.
T Consensus 328 ~Rr~~~g~Wr-----------tNvg----~g~~e----------~i~------------l-----t~e~~elA~kAaka~ 365 (422)
T 1pk8_A 328 MRTSVSGNWK-----------TNTG----SAMLE----------QIA------------M-----SDRYKLWVDTCSEIF 365 (422)
T ss_dssp EEEESSSCSS-----------TTSS----CEEEE----------EEC------------C-----CHHHHHHHHHHTTGG
T ss_pred EEEcCCCCce-----------eccC----ceeee----------eeC------------C-----CHHHHHHHHHHHHHh
Confidence 666633 221 3431 00000 001 1 123444444333222
Q ss_pred hccCCCCCCcceEEeeeeeecCCCCeEEEcccC--CCCCCC
Q psy11344 258 LSAIPQTKNCFEFFGFDILVDSSLNPWLLESQP--DTAPGT 296 (586)
Q Consensus 258 ~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~--~P~l~~ 296 (586)
....++|+|++.+++|++++||||+ +|.+..
T Consensus 366 --------gGldiaGVDlL~s~dG~~~VlEVN~s~~P~~~g 398 (422)
T 1pk8_A 366 --------GGLDICAVEALHGKDGRDHIIEVVGSSMPLIGD 398 (422)
T ss_dssp --------GCCSEEEEEEEEETTSCEEEEEEECTTCCCCTT
T ss_pred --------CCCCEEEEEEEEcCCCCEEEEEECCCCCCCccc
Confidence 1246899999999999999999999 999963
No 7
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=98.48 E-value=3.4e-07 Score=94.50 Aligned_cols=121 Identities=11% Similarity=0.136 Sum_probs=78.8
Q ss_pred CceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCe
Q psy11344 107 DNVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGL 178 (586)
Q Consensus 107 ~~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~ 178 (586)
+-..|+||..|++|+|+.++++.+++. ....+++|+||. ..+|+|++|+=. ++ + ++
T Consensus 169 g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~~~~~~~vQefI~-------~g~DiRv~VVGg-----~v-v---a~ 232 (344)
T 2p0a_A 169 HFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFID-------SKYDIRIQKIGS-----NY-K---AY 232 (344)
T ss_dssp SSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-------EEEEEEEEEETT-----EE-E---EE
T ss_pred CCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhccCCeEEEEeccC-------CCccEEEEEECC-----EE-E---EE
Confidence 347999999999999999999987654 123466899996 269999999822 22 1 34
Q ss_pred eeeecC-CCCCCCCCCCCccccccccccCCCCCCCcccccCCcc--ccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q psy11344 179 ARFGTD-KFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGC--KWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIA 255 (586)
Q Consensus 179 ~R~a~~-~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~--~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~ 255 (586)
.|.+.. .|. ||.+ +|. ... . -++.++++.++..
T Consensus 233 ~R~~~~g~wr-----------tN~~----------------~~~~e~~~------------l-----~~e~~~la~~Aa~ 268 (344)
T 2p0a_A 233 MRTSISGNWK-----------ANTG----------------SAMLEQVA------------M-----TERYRLWVDSCSE 268 (344)
T ss_dssp EEEESSSCSS-----------TTSS----------------SEEEEEEC------------C-----CHHHHHHHHHHTT
T ss_pred EEecCCCCCe-----------ecCC----------------ceEEEeeC------------C-----CHHHHHHHHHHHH
Confidence 666532 222 3321 010 001 1 1234444333222
Q ss_pred HhhccCCCCCCcceEEeeeeeecCCCCeEEEcccC--CCCCC
Q psy11344 256 SELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQP--DTAPG 295 (586)
Q Consensus 256 ~~~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~--~P~l~ 295 (586)
+ + ....++|+|++.+.+|+++++|||+ +|.+.
T Consensus 269 a----~----gGldi~GVDll~~~~G~~~VlEVN~~~~P~~~ 302 (344)
T 2p0a_A 269 M----F----GGLDICAVKAVHSKDGRDYIIEVMDSSMPLIG 302 (344)
T ss_dssp G----G----GCCSEEEEEEEEETTSCEEEEEEECTTCCCCG
T ss_pred H----h----CCCCEEEEEEEEcCCCCEEEEEEcCCCCCccc
Confidence 2 1 1246899999999999999999999 99996
No 8
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=98.43 E-value=1.2e-06 Score=91.59 Aligned_cols=141 Identities=14% Similarity=0.154 Sum_probs=80.1
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCee
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLA 179 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~ 179 (586)
-.+|+||..++.|.||.++++.+++. .+..++||+||+ |+ ++++-|+.... + .+.. -|-+
T Consensus 180 ~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~------G~--E~~v~vl~~~~-~-~~~~--~~ei 247 (364)
T 3i12_A 180 LPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK------GR--EIECAVLGNDN-P-QAST--CGEI 247 (364)
T ss_dssp SSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC------SE--EEEEEEEESSS-C-EEEE--EEEE
T ss_pred CCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC------Ce--EEEEEEEeCCC-c-eEee--eEEE
Confidence 46899999999999999999988764 245789999995 53 56665554321 1 1111 0111
Q ss_pred eeecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhc
Q psy11344 180 RFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELS 259 (586)
Q Consensus 180 R~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~~ 259 (586)
.....-|+.. ..|.... ..+.... ... ...+.++|.+++.+++.+.
T Consensus 248 ~~~~~~~~~~------------------~ky~~~~---~~~~~~P----------a~l-~~~~~~~i~~~a~~~~~al-- 293 (364)
T 3i12_A 248 VLNSEFYAYD------------------TKYIDDN---GAQVVVP----------AQI-PSEVNDKIRAIAIQAYQTL-- 293 (364)
T ss_dssp ECCTTCC--T------------------TTTSGGG---GCEEESS----------CSS-CHHHHHHHHHHHHHHHHHT--
T ss_pred ecCCCccCHH------------------HcccCCC---ceEEEeC----------CCC-CHHHHHHHHHHHHHHHHHh--
Confidence 1111111100 0011000 0000000 001 1224456666655544432
Q ss_pred cCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCcc
Q psy11344 260 AIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDL 300 (586)
Q Consensus 260 ~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~~ 300 (586)
+|....++||++|++|+||++|||+.|++...+-+
T Consensus 294 ------g~~G~~~vD~~~~~~g~~~vlEiN~~Pg~t~~s~~ 328 (364)
T 3i12_A 294 ------GCAGMARVDVFLTADNEVVINEINTLPGFTNISMY 328 (364)
T ss_dssp ------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred ------CCceEEEEEEEEecCCCEEEEEeeCCCCCCCCCHH
Confidence 34467899999999999999999999999776544
No 9
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=98.41 E-value=7.5e-07 Score=92.53 Aligned_cols=145 Identities=12% Similarity=0.096 Sum_probs=81.3
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCee
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLA 179 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~ 179 (586)
-.+|+||..++.|+||.++++.+++. ....++||+||+ |+ ++++.|+...-.+ .++ ...
T Consensus 166 ~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~------G~--E~~v~vl~~~~~~-~~~----~~~ 232 (346)
T 3se7_A 166 YPVFVKPARSGSSFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI------GT--EIGCAVMGNGPEL-ITG----EVD 232 (346)
T ss_dssp SSEEEEESSCCTTTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC------SE--EEEEEEEEETTEE-EEC----CCE
T ss_pred CCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC------CE--EEEEEEEecCCCe-EEE----eeE
Confidence 46899999999999999999988764 346789999995 54 6777776542111 111 111
Q ss_pred eeecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhc
Q psy11344 180 RFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELS 259 (586)
Q Consensus 180 R~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~~ 259 (586)
+..... .+ -.+ .|.....|.... .+.... ... ...+.++|.+++.+++.+.
T Consensus 233 e~~~~~----~~-------~d~-~q~~~~ky~~~~----~~~~~p----------a~l-~~~~~~~i~~~a~~~~~~l-- 283 (346)
T 3se7_A 233 QITLSH----GF-------FKI-HQESTPESGSDN----SAVTVP----------ADI-STTSRSLVQDTAKAVYRAL-- 283 (346)
T ss_dssp EECCC--------------------------CGGG----SCEESS----------CCC-CHHHHHHHHHHHHHHHHHH--
T ss_pred EEecCC----CC-------cCc-ccchhccccCCC----eeEEeC----------CCC-CHHHHHHHHHHHHHHHHHh--
Confidence 111100 00 000 000001111100 000000 001 1234456666655555443
Q ss_pred cCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCcc
Q psy11344 260 AIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDL 300 (586)
Q Consensus 260 ~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~~ 300 (586)
+|....++||++|++++||+||||+.|++...+.+
T Consensus 284 ------g~~G~~~vD~~~~~~g~~~vlEiN~rPG~t~~s~~ 318 (346)
T 3se7_A 284 ------GCRGLSRVDLFLTEDGKVVLNEVNTFPGMTSYSRY 318 (346)
T ss_dssp ------TCCEEEEEEEEECTTSCEEEEEEESSCCCSTTCHH
T ss_pred ------CCceEEEEEEEEeCCCCEEEEEEeCCCCCCcccHH
Confidence 23367899999999999999999999999766544
No 10
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=98.41 E-value=6.9e-07 Score=92.63 Aligned_cols=143 Identities=16% Similarity=0.115 Sum_probs=80.3
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCee
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLA 179 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~ 179 (586)
-.+|+||..++.|+||.++++.+++. ....++||+||+ |+ ++++.++..... ..+. --+-+
T Consensus 166 ~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~------G~--E~~v~vl~~~~~-~~~~--~~~ei 234 (343)
T 1e4e_A 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVS------GC--EVGCAVLGNSAA-LVVG--EVDQI 234 (343)
T ss_dssp SCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC------SE--EEEEEEEEETTC-CEEC--CCEEE
T ss_pred CCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC------Ce--EEEEEEEeCCCC-eEEe--eeEEE
Confidence 46999999999999999999987764 346789999995 54 566666654211 1111 00001
Q ss_pred eeecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhc
Q psy11344 180 RFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELS 259 (586)
Q Consensus 180 R~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~~ 259 (586)
+....-|+. -.++ ... .+.|..... .-... ...+.++|++++.+++.+.
T Consensus 235 ~~~~~~~~~---------~~k~---------~~~---~~~g~~~~~-------~p~~l-~~~~~~~i~~~a~~~~~al-- 283 (343)
T 1e4e_A 235 RLQYGIFRI---------HQEV---------EPE---KGSENAVIT-------VPADL-SAEERGRIQETVKKIYKTL-- 283 (343)
T ss_dssp EESSSCCCG---------GGSS---------SGG---GCCSSEEEC-------SSCSS-CHHHHHHHHHHHHHHHHHT--
T ss_pred eeCCCccCH---------hhcc---------ccc---CCCCCeeEE-------eCCCC-CHHHHHHHHHHHHHHHHHc--
Confidence 111001110 0011 000 000000000 00001 1224456666655544433
Q ss_pred cCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCC
Q psy11344 260 AIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNK 298 (586)
Q Consensus 260 ~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~ 298 (586)
+|...+++||++|++|+||+||||+.|++...+
T Consensus 284 ------g~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s 316 (343)
T 1e4e_A 284 ------GCRGLARVDMFLQDNGRIVLNEVNTLPGFTSYS 316 (343)
T ss_dssp ------TCEEEEEEEEEECTTCCEEEEEEESSCCCSTTC
T ss_pred ------CCceEEEEEEEEeCCCCEEEEEeeCCCCCCccc
Confidence 244679999999999999999999999997654
No 11
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=98.40 E-value=6.5e-07 Score=91.82 Aligned_cols=89 Identities=8% Similarity=0.160 Sum_probs=57.9
Q ss_pred ccccHHHHHHHHHHHHHhCCCCceeeccccCCccHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCC---CceEEecCc
Q psy11344 53 ICRKDQLTRYLKSMKKIFGSIYNFSPEAYNLPLEYTKLVAECSRQARNSTYENPDNVWICKPVGQSQG---RGILLFQRL 129 (586)
Q Consensus 53 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~lp~e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G---~GI~l~~~~ 129 (586)
...|..+.+.+++ .+ --+|+|+.+.. ..+..+...+. +-.-.+|+||..|+.| +|+.++++.
T Consensus 96 ~~dK~~~~~~l~~----~g---i~~P~~~~~~~-~~~~~~~~~~~-------~~~~P~vvKP~~g~g~~~s~gv~~v~~~ 160 (324)
T 1z2n_X 96 MSSREEINALLIK----NN---IPIPNSFSVKS-KEEVIQLLQSK-------QLILPFIVKPENAQGTFNAHQMKIVLEQ 160 (324)
T ss_dssp HTBHHHHHHHHHH----TT---CCCSCEEEESS-HHHHHHHHHTT-------CSCSSEEEEESBCSSSSGGGEEEEECSG
T ss_pred HhCHHHHHHHHHH----CC---CCCCCEEEeCC-HHHHHHHHHHc-------CCCCCEEEeeCCCCCCccceeeEEEeCH
Confidence 3456666555543 22 24788887744 22322222110 1124799999999999 999999988
Q ss_pred hhhh-ccchhhhhhhccCccccCCceeeeeEEEE
Q psy11344 130 SELV-YESNAVVQQYVKNPLLIGGYKFDLRLYVC 162 (586)
Q Consensus 130 ~~i~-~~~~~ivQ~YI~~PlLi~g~KFDlR~yvl 162 (586)
+++. ...++++|+||+. . .+|+|++|+
T Consensus 161 ~~l~~~~~~~lvqe~i~~----~--g~~~~v~v~ 188 (324)
T 1z2n_X 161 EGIDDIHFPCLCQHYINH----N--NKIVKVFCI 188 (324)
T ss_dssp GGGTTCCSSEEEEECCCC----T--TCEEEEEEE
T ss_pred HHHhhcCCCEEEEEccCC----C--CcEEEEEEE
Confidence 7765 3467999999963 2 389999886
No 12
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=98.39 E-value=5.6e-07 Score=93.98 Aligned_cols=51 Identities=16% Similarity=0.085 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCcc
Q psy11344 242 LWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDL 300 (586)
Q Consensus 242 ~~~~i~~~i~~~~~~~~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~~ 300 (586)
+.++|+++..+++.+. +|-.+.++||++|++|++|++|||+.|+|+..+-+
T Consensus 275 ~~~~i~~~A~~~~~aL--------g~~G~~~VDf~~~~dg~~~vlEvNt~PG~t~~S~~ 325 (357)
T 4fu0_A 275 AEKRIQEAAVTIYKAL--------GCSGFSRVDMFYTPSGEIVFNEVNTIPGFTSHSRY 325 (357)
T ss_dssp HHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred HHHHHHHHHHHHHHHh--------CCcceEEEEEEEeCCCCEEEEEEeCCCCCCcccHH
Confidence 4466666655544432 34467899999999999999999999999876644
No 13
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=98.39 E-value=9.6e-07 Score=92.37 Aligned_cols=138 Identities=12% Similarity=0.121 Sum_probs=79.1
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCee
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLA 179 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~ 179 (586)
-.+|+||..++.|+||.++++.+++. ....++||+||+ |+ ++++.|+... ++ .+ ...|-+
T Consensus 172 ~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~------G~--E~~v~vl~~~-~~-~~--~~~~e~ 239 (364)
T 2i87_A 172 YPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN------AR--EIEVAVLGND-YP-EA--TWPGEV 239 (364)
T ss_dssp SSEEEEESSCSSCTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC------CE--EEEEEEEESS-SC-EE--CCCEEE
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc------Ce--EEEEEEEcCC-Cc-EE--eeeEEE
Confidence 46999999999999999999987764 246789999996 53 6777776542 11 00 001101
Q ss_pred eeecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhc
Q psy11344 180 RFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELS 259 (586)
Q Consensus 180 R~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~~ 259 (586)
.....-|+. -.++ ... ..+.... ... ...+.++|.+++.+++.+.
T Consensus 240 ~~~~~~~~~---------~~k~---------~~g----~~~~~~p----------a~l-~~~~~~~i~~~a~~~~~al-- 284 (364)
T 2i87_A 240 VKDVAFYDY---------KSKY---------KDG----KVQLQIP----------ADL-DEDVQLTLRNMALEAFKAT-- 284 (364)
T ss_dssp CCSCCC---------------------------------CCEESS----------CSS-CHHHHHHHHHHHHHHHHHT--
T ss_pred ecCCCcCCH---------HHcc---------cCC----CeeEEeC----------CCC-CHHHHHHHHHHHHHHHHHc--
Confidence 000000100 0000 000 0000000 001 1234456666655554433
Q ss_pred cCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCC
Q psy11344 260 AIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNK 298 (586)
Q Consensus 260 ~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~ 298 (586)
+|....++||++|++|+||+||||+.|++...+
T Consensus 285 ------g~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s 317 (364)
T 2i87_A 285 ------DCSGLVRADFFVTEDNQIYINETNAMPGFTAFS 317 (364)
T ss_dssp ------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTS
T ss_pred ------CCCcEEEEEEEEecCCCEEEEEEeCCCCCCchh
Confidence 233678999999999999999999999997654
No 14
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=98.38 E-value=5.6e-07 Score=94.85 Aligned_cols=140 Identities=13% Similarity=0.118 Sum_probs=71.2
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCee
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLA 179 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~ 179 (586)
-.+|+||..++.|+||.++++.+++. .+..++||+||+ |+ ++++-|+.. ....++...+ +
T Consensus 202 ~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~------G~--E~~v~vl~d--~~~~~~~~~e--i 269 (383)
T 3k3p_A 202 YPVFVKPANMGSSVGISKAENRTDLKQAIALALKYDSRVLIEQGVD------AR--EIEVGILGN--TDVKTTLPGE--I 269 (383)
T ss_dssp SSEEEEECC------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC------SE--EEEEEEEES--SSCEECCCEE--E
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC------Ce--EEEEEEEeC--CCeeEEeeEE--E
Confidence 46999999999999999999988764 345789999995 54 455555532 1121110000 0
Q ss_pred eeecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhc
Q psy11344 180 RFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELS 259 (586)
Q Consensus 180 R~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~~ 259 (586)
.....-|+- ...|.... .+.... ... ...+.++|.+++.+++.+.
T Consensus 270 ~~~~~~~d~------------------~~ky~~g~----~~~~~P----------a~l-~~~~~~~i~~~a~~~~~aL-- 314 (383)
T 3k3p_A 270 VKDVAFYDY------------------EAKYIDNK----ITMAIP----------AEI-DPVIVEKMRDYAATAFRTL-- 314 (383)
T ss_dssp C---------------------------------------CEESS----------CCC-CHHHHHHHHHHHHHHHHHT--
T ss_pred ecCCCccch------------------hhcccCCC----eeEEec----------CCC-CHHHHHHHHHHHHHHHHHc--
Confidence 000000000 00010000 000000 001 1234456666655544433
Q ss_pred cCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCcc
Q psy11344 260 AIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDL 300 (586)
Q Consensus 260 ~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~~ 300 (586)
+|-...++||++|++++||++|||+.|++...+-+
T Consensus 315 ------g~~G~~~vDf~~~~~g~~~vlEINtrPG~t~~S~~ 349 (383)
T 3k3p_A 315 ------GCCGLSRCDFFLTEDGKVYLNELNTMPGFTQWSMY 349 (383)
T ss_dssp ------TCCEEEEEEEEECTTCCEEEEEEESSCCCC--CHH
T ss_pred ------CCceEEEEEEEEECCCCEEEEEeeCCCCCCcccHH
Confidence 34467899999999999999999999999876544
No 15
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=98.37 E-value=1.3e-06 Score=92.31 Aligned_cols=141 Identities=17% Similarity=0.151 Sum_probs=78.9
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCee
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLA 179 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~ 179 (586)
-.+|+||..++.|+||.++++.+++. ....++||+||+ | -++++-|+... ...+....+ +
T Consensus 199 ~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~------G--~E~~v~vl~~~--~~~~~~~ge--i 266 (386)
T 3e5n_A 199 LPLFVKPANQGSSVGVSQVRTADAFAAALALALAYDHKVLVEAAVA------G--REIECAVLGNA--VPHASVCGE--V 266 (386)
T ss_dssp SSEEEEESBSCSSTTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC------S--EEEEEEEECSS--SCEEEEEEE--E
T ss_pred CCEEEEECCCCcCCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC------C--eEEEEEEEeCC--CceEEEeEE--E
Confidence 46899999999999999999988764 246789999995 4 34555554331 122111000 1
Q ss_pred eeecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhc
Q psy11344 180 RFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELS 259 (586)
Q Consensus 180 R~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~~ 259 (586)
.....-|+- . ..|... .+..... -... ...+.++|.+++.+++.+.
T Consensus 267 ~~~~~~~d~---~---------------~ky~~~-----~~~~~~~--------Pa~l-~~~~~~~i~~~a~~~~~aL-- 312 (386)
T 3e5n_A 267 VVHDAFYSY---A---------------TKYISE-----HGAEIVI--------PADI-DAQTQQRIQQIAVQAYQAL-- 312 (386)
T ss_dssp CC----------------------------------------CEES--------SCSS-CHHHHHHHHHHHHHHHHHH--
T ss_pred EeCCcccch---h---------------cccCCC-----CCeEEEE--------CCCC-CHHHHHHHHHHHHHHHHHh--
Confidence 100000000 0 001000 0000000 0011 1234456666655555443
Q ss_pred cCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCcc
Q psy11344 260 AIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDL 300 (586)
Q Consensus 260 ~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~~ 300 (586)
+|..+.++||++|++|+||++|||+.|++...+-+
T Consensus 313 ------g~~G~~~vDf~~~~dg~~~vlEiN~~PG~t~~S~~ 347 (386)
T 3e5n_A 313 ------GCAGMARVDVFLCADGRIVINEVNTLPGFTRISVY 347 (386)
T ss_dssp ------TCCSEEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred ------CCccEEEEEEEEECCCcEEEEEeECCCCCCccCHH
Confidence 23357899999999999999999999999876654
No 16
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=98.34 E-value=3.4e-07 Score=91.43 Aligned_cols=85 Identities=21% Similarity=0.179 Sum_probs=55.1
Q ss_pred ccccHHHHHHHHHHHHHhCCCCceeeccccCCc--cHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEecCch
Q psy11344 53 ICRKDQLTRYLKSMKKIFGSIYNFSPEAYNLPL--EYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLS 130 (586)
Q Consensus 53 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~lp~--e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~ 130 (586)
..+|..+.+.+++ .+ . -+|+|+.+.. +..++.+.+ +-.+|+||..|+.|+|+.++++.+
T Consensus 86 ~~dK~~~~~~l~~----~g-i--~~p~~~~~~~~~~~~~~~~~~------------~~p~vvKp~~g~~~~gv~~v~~~~ 146 (280)
T 1uc8_A 86 CGDKWATSVALAK----AG-L--PQPKTALATDREEALRLMEAF------------GYPVVLKPVIGSWGRLLAXXXXXX 146 (280)
T ss_dssp HHBHHHHHHHHHH----TT-C--CCCCEEEESSHHHHHHHHHHH------------CSSEEEECSBCCBCSHHHHHHHHH
T ss_pred hCCHHHHHHHHHH----cC-c--CCCCeEeeCCHHHHHHHHHHh------------CCCEEEEECCCCCcccceeccccc
Confidence 4456666555443 22 1 2688876643 333333332 237999999999999999987765
Q ss_pred hhhc------------cchhhhhhhccCccccCCceeeeeEEEE
Q psy11344 131 ELVY------------ESNAVVQQYVKNPLLIGGYKFDLRLYVC 162 (586)
Q Consensus 131 ~i~~------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvl 162 (586)
++.. ..+++||+||+ |..+++|++++
T Consensus 147 el~~~~~~~~~~~~~~~~~~lvqe~i~------~~~~e~~v~v~ 184 (280)
T 1uc8_A 147 XXXXXXXXKEVLGGFQHQLFYIQEYVE------KPGRDIRVFVV 184 (280)
T ss_dssp C------------CTTTTCEEEEECCC------CSSCCEEEEEE
T ss_pred ccchhhhhHhhhcccCCCcEEEEeccC------CCCceEEEEEE
Confidence 5421 45789999996 34689999886
No 17
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=98.31 E-value=8e-07 Score=90.37 Aligned_cols=47 Identities=21% Similarity=0.446 Sum_probs=33.9
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEE
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVC 162 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvl 162 (586)
-.+|+||..++.|+||.++++.+++. ...+++||+||+ | -++++.++
T Consensus 134 ~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~------G--~e~~v~v~ 188 (307)
T 3r5x_A 134 FPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEWDSEVVIEKYIK------G--EEITCSIF 188 (307)
T ss_dssp SSEEEEECC----CCCEEECSHHHHHHHHHHHHHHCSEEEEEECCC------S--EEEEEEEE
T ss_pred CCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCEEEECCcC------C--EEEEEEEE
Confidence 46899999999999999999987764 246789999996 5 36777663
No 18
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=98.29 E-value=2e-06 Score=88.48 Aligned_cols=48 Identities=25% Similarity=0.388 Sum_probs=37.5
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCC-ceeeeeEEEEE
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGG-YKFDLRLYVCV 163 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g-~KFDlR~yvlv 163 (586)
-.+|+||..++.|+|+.++++.+++. ....++||+||+ | + ++++.|+.
T Consensus 151 ~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~------G~~--E~~v~vl~ 207 (322)
T 2fb9_A 151 PPFFVKPANTGSSVGISRVERFQDLEAALALAFRYDEKAVVEKALS------PVR--ELEVGVLG 207 (322)
T ss_dssp SCEEEEETTCCTTTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS------SCE--EEEEEEES
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC------CCe--eEEEEEEe
Confidence 46999999999999999999987764 246789999996 4 3 55555553
No 19
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=98.29 E-value=1.5e-06 Score=91.25 Aligned_cols=137 Identities=13% Similarity=0.113 Sum_probs=78.3
Q ss_pred EEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCeeee
Q psy11344 110 WICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLARF 181 (586)
Q Consensus 110 wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~R~ 181 (586)
+|+||..++.|+||.++++.+++. .+..++||+||+ |+ ++++-|+... . ..+. ...++
T Consensus 183 vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~------G~--E~~v~vl~~~-~-~~~~----~~~ei 248 (372)
T 3tqt_A 183 LFVKAVSLGSSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR------GR--EIECAVLGNG-A-PKAS----LPGEI 248 (372)
T ss_dssp EEEEESSCCSGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC------SE--EEEEEEEESS-S-CEEC----CCEEE
T ss_pred EEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC------CE--EEEEEEEeCC-C-ceEe----eeEEE
Confidence 999999999999999999988764 246789999995 54 4555555432 1 1110 01111
Q ss_pred ec--CCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhc
Q psy11344 182 GT--DKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELS 259 (586)
Q Consensus 182 a~--~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~~ 259 (586)
.. .-|+-. ..|... .+..... -... +..+.++|++++.+++.+.
T Consensus 249 ~~~~~~~d~~------------------~ky~~g-----~~~~~~~--------Pa~l-~~~~~~~i~~~a~~~~~aL-- 294 (372)
T 3tqt_A 249 IPHHDYYSYD------------------AKYLDP-----NGATTTT--------SVDL-SESVTKQIQQIAIDAFKMV-- 294 (372)
T ss_dssp ECC--------------------------------------CEEES--------CCCC-CHHHHHHHHHHHHHHHHHT--
T ss_pred ecCCCccchh------------------hcccCC-----CceEEEe--------CCCC-CHHHHHHHHHHHHHHHHHh--
Confidence 11 001100 000000 0000000 0011 1234566666655554432
Q ss_pred cCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCcc
Q psy11344 260 AIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDL 300 (586)
Q Consensus 260 ~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~~ 300 (586)
+|....++||++|++|+||++|||+.|+|...+-+
T Consensus 295 ------g~~G~~rvDf~~~~dg~~~vlEINt~PG~t~~S~~ 329 (372)
T 3tqt_A 295 ------HCSGMARVDFFVTPNNKVLVNEINTIPGFTNISMY 329 (372)
T ss_dssp ------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred ------CCccEEEEEEEEeCCCcEEEEEEECCCCcCccCHH
Confidence 34467899999999999999999999999876554
No 20
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=98.25 E-value=1.6e-06 Score=88.92 Aligned_cols=50 Identities=8% Similarity=0.056 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCC
Q psy11344 243 WQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPG 295 (586)
Q Consensus 243 ~~~i~~~i~~~~~~~~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~ 295 (586)
.+++.+++.+++.+..... ..+...+++||++|++++||+||||..|+..
T Consensus 242 ~~~i~~~a~~~~~~l~~~~---~~~~G~~~vd~~~~~~g~~~viEiN~R~g~~ 291 (334)
T 2r85_A 242 LMDVIEAGERVVKAAEELM---GGLWGPFCLEGVFTPDLEFVVFEISARIVAG 291 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHS---SCCCEEEEEEEEECTTSCEEEEEEECSCCGG
T ss_pred HHHHHHHHHHHHHHHHhhc---ccccccEEEEEEECCCCCEEEEEEeCCcCCC
Confidence 3556666555555443211 1456789999999999999999999999874
No 21
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=98.21 E-value=4.6e-06 Score=87.54 Aligned_cols=129 Identities=12% Similarity=0.190 Sum_probs=74.4
Q ss_pred ceEEEcCCCCC-CCCceEEecCchhhhcc--chhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCeeeeecC
Q psy11344 108 NVWICKPVGQS-QGRGILLFQRLSELVYE--SNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLARFGTD 184 (586)
Q Consensus 108 ~~wIvKP~~gs-~G~GI~l~~~~~~i~~~--~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~R~a~~ 184 (586)
-.+|+||..++ .|+|+.++++.+++... ..++||+||+. | .++++.++.....-..++-. .+
T Consensus 133 ~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~~~~~lvEe~i~~-----g--~e~sv~~~~~~~G~~~~~~~--------~~ 197 (380)
T 3ax6_A 133 FPVVQKARKGGYDGRGVFIIKNEKDLENAIKGETYLEEFVEI-----E--KELAVMVARNEKGEIACYPV--------VE 197 (380)
T ss_dssp SSEEEEESCCC-----EEEECSGGGGGGCCCSSEEEEECCCE-----E--EEEEEEEEECSSCCEEEEEE--------EE
T ss_pred CCEEEEecCCCCCCCCeEEECCHHHHHHHhcCCEEEEeccCC-----C--eeEEEEEEECCCCCEEEECC--------ee
Confidence 47999999999 99999999998887533 67999999962 2 47777776542111121111 01
Q ss_pred CC--CCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhccCC
Q psy11344 185 KF--SLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASELSAIP 262 (586)
Q Consensus 185 ~y--~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~ 262 (586)
.+ ..... + ..+ +.. ... ...+.+++.+++.+++.+.
T Consensus 198 ~~~~~~~~~-----~--~~~-------~~p----------------------~~l-~~~~~~~~~~~a~~~~~~l----- 235 (380)
T 3ax6_A 198 MYFDEDANI-----C--DTV-------IAP----------------------ARI-EEKYSKIAREIATSVVEAL----- 235 (380)
T ss_dssp EC---------------CEE-------EES----------------------CSS-CHHHHHHHHHHHHHHHHHH-----
T ss_pred eeecccCCe-----e--EEE-------ECC----------------------CCC-CHHHHHHHHHHHHHHHHHC-----
Confidence 11 00000 0 000 000 000 1123455666555555444
Q ss_pred CCCCcceEEeeeeeecCCCCeEEEcccCCCCCCC
Q psy11344 263 QTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGT 296 (586)
Q Consensus 263 ~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~ 296 (586)
++...+++||++|++|+||+||||..|+...
T Consensus 236 ---g~~G~~~vd~~~~~~g~~~viEiN~R~~~~~ 266 (380)
T 3ax6_A 236 ---EGVGIFGIEMFLTKQGEILVNEIAPRPHNSG 266 (380)
T ss_dssp ---TCCEEEEEEEEEETTSCEEEEEEESSCCGGG
T ss_pred ---CCeEEEEEEEEEeCCCcEEEEEecCCCCCCc
Confidence 2346799999999999999999999998754
No 22
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=98.21 E-value=5.1e-06 Score=87.31 Aligned_cols=145 Identities=14% Similarity=0.098 Sum_probs=79.4
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCee
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLA 179 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~ 179 (586)
-.+|+||..++.|+||.++++.+++. ....++||+||+ |. -++++-|+... ++ .+.. -+
T Consensus 175 ~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~------G~-~E~~v~vl~~~-~~-~~~~--~~-- 241 (377)
T 1ehi_A 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN------GA-RELEVGVIGND-QP-LVSE--IG-- 241 (377)
T ss_dssp SCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC------CS-CEEEEEEEESS-SC-EEEE--EE--
T ss_pred CCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC------CC-ceEEEEEEcCC-Cc-EEEe--eE--
Confidence 46899999999999999999988764 245789999996 30 25666665432 11 1111 01
Q ss_pred eeecCCCC-CCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q psy11344 180 RFGTDKFS-LANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASEL 258 (586)
Q Consensus 180 R~a~~~y~-~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~ 258 (586)
+......+ ...+-+. -.+ |.... ..+.... ... .....++|.+++.+++.+.
T Consensus 242 ei~~~~~~~~~~~~d~---~~k---------~~~g~---~~~~~~P----------a~l-~~~~~~~i~~~a~~~~~al- 294 (377)
T 1ehi_A 242 AHTVPNQGSGDGWYDY---NNK---------FVDNS---AVHFQIP----------AQL-SPEVTKEVKQMALDAYKVL- 294 (377)
T ss_dssp EEECTTSSSSSCCCCH---HHH---------TTCCT---TCEEESS----------CCC-CHHHHHHHHHHHHHHHHHT-
T ss_pred EEEecCCCCcCceeCH---Hhc---------ccCCC---CeeEEeC----------CCC-CHHHHHHHHHHHHHHHHHc-
Confidence 11110000 0000000 000 00000 0000000 001 1234456666655544432
Q ss_pred ccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCc
Q psy11344 259 SAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKD 299 (586)
Q Consensus 259 ~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~ 299 (586)
+|-...++||++|.+|+||+||||..|++...+-
T Consensus 295 -------g~~G~~~vD~~~~~~g~~~vlEiN~rpg~t~~s~ 328 (377)
T 1ehi_A 295 -------NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSL 328 (377)
T ss_dssp -------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCG
T ss_pred -------CCCcEEEEEEEEeCCCCEEEEEEeCCCCCCcccH
Confidence 2336789999999999999999999999876553
No 23
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=98.12 E-value=1.3e-05 Score=85.03 Aligned_cols=50 Identities=14% Similarity=0.200 Sum_probs=36.9
Q ss_pred ceEEEcCCCCC-CCCceEEecCchhhhc------cchhhhhhhccCccccCCceeeeeEEEEEe
Q psy11344 108 NVWICKPVGQS-QGRGILLFQRLSELVY------ESNAVVQQYVKNPLLIGGYKFDLRLYVCVP 164 (586)
Q Consensus 108 ~~wIvKP~~gs-~G~GI~l~~~~~~i~~------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~ 164 (586)
-.+|+||..++ .|+|+.++++.+++.. ...++||+||+. ..++.+.++..
T Consensus 161 ~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~~-------~~E~sv~v~~~ 217 (403)
T 3k5i_A 161 YPLMLKSKTMAYDGRGNFRVNSQDDIPEALEALKDRPLYAEKWAYF-------KMELAVIVVKT 217 (403)
T ss_dssp SSEEEEESSSCCTTTTEEEECSTTSHHHHHHHTTTSCEEEEECCCE-------EEEEEEEEEEC
T ss_pred CCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhcCCCcEEEecCCCC-------CeEEEEEEEEc
Confidence 46899998886 9999999999887642 457899999951 23555555543
No 24
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=98.10 E-value=1.4e-05 Score=84.11 Aligned_cols=38 Identities=11% Similarity=0.270 Sum_probs=31.4
Q ss_pred ceEEEcCCCCCC-CCceEEecCchhhhc------cchhhhhhhcc
Q psy11344 108 NVWICKPVGQSQ-GRGILLFQRLSELVY------ESNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~gs~-G~GI~l~~~~~~i~~------~~~~ivQ~YI~ 145 (586)
-.+|+||..+.. |+|+.++++.+++.. ..+++||+||+
T Consensus 148 ~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~ 192 (389)
T 3q2o_A 148 YPSVLKTTTGGYDGKGQVVLRSEADVDEARKLANAAECILEKWVP 192 (389)
T ss_dssp SSEEEEESSCCSSSCCEEEESSGGGHHHHHHHHHHSCEEEEECCC
T ss_pred CCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcCCCCEEEEeccc
Confidence 468999999864 899999999888642 46789999996
No 25
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=98.09 E-value=3.8e-06 Score=85.22 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=49.0
Q ss_pred eeeccccCCc--cHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEec-Cchhhh---------ccchhhhhhh
Q psy11344 76 FSPEAYNLPL--EYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQ-RLSELV---------YESNAVVQQY 143 (586)
Q Consensus 76 ~~P~T~~lp~--e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~-~~~~i~---------~~~~~ivQ~Y 143 (586)
.+|+|+.+.. +..++.+.+ +.+|+||..|+.|+|+.+++ +.+++. ...++++|+|
T Consensus 134 ~~P~t~~~~~~~~~~~~~~~~-------------~p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~ 200 (316)
T 1gsa_A 134 LTPETLVTRNKAQLKAFWEKH-------------SDIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNY 200 (316)
T ss_dssp TSCCEEEESCHHHHHHHHHHH-------------SSEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEEC
T ss_pred cCCCeEEeCCHHHHHHHHHHc-------------CCEEEEECCCCCcccEEEecCChHHHHHHHHHHHhcCCceEEEecc
Confidence 5788877643 333343332 26999999999999999998 654432 1367999999
Q ss_pred ccCccccCCceeeeeEEEE
Q psy11344 144 VKNPLLIGGYKFDLRLYVC 162 (586)
Q Consensus 144 I~~PlLi~g~KFDlR~yvl 162 (586)
|+.+ ..+|+|++++
T Consensus 201 i~~~-----~~~~~~v~~~ 214 (316)
T 1gsa_A 201 LPAI-----KDGDKRVLVV 214 (316)
T ss_dssp CGGG-----GGCEEEEEEE
T ss_pred cCCC-----CCCCEEEEEE
Confidence 9732 3699999886
No 26
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=98.07 E-value=4.7e-06 Score=87.51 Aligned_cols=146 Identities=13% Similarity=0.081 Sum_probs=79.4
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccCee
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLA 179 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g~~ 179 (586)
-.+|+||..++.|+||.++++.+++. .+..++||+||+ |+ ++++-|+... ...+.+..-+-+
T Consensus 189 ~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~------G~--E~~v~vl~~~--~~~~~~~~~~ei 258 (373)
T 3lwb_A 189 LPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS------GR--ELECGVLEMP--DGTLEASTLGEI 258 (373)
T ss_dssp SCEEEEESBCSTTTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE------EE--EEEEEEEECT--TSCEEECCCEEE
T ss_pred CCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC------Ce--EEEEEEEECC--CCceEEeeeeEE
Confidence 46899999999999999999988864 246789999996 43 5555555432 110010011111
Q ss_pred eeec-CCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q psy11344 180 RFGT-DKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASEL 258 (586)
Q Consensus 180 R~a~-~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~ 258 (586)
+... .... ..+-+ .-.++ .. ++..... -... ...+.++|++++.+++.+.
T Consensus 259 ~~~~~~~~~-~~~~d---~~~ky---------~~------~~~~~~~--------Pa~l-~~~~~~~i~~~a~~~~~aL- 309 (373)
T 3lwb_A 259 RVAGVRGRE-DSFYD---FATKY---------LD------DAAELDV--------PAKV-DDQVAEAIRQLAIRAFAAI- 309 (373)
T ss_dssp ECCSTTCSE-ESSSC---HHHHH---------TC------TTCEEES--------SCCC-CHHHHHHHHHHHHHHHHHT-
T ss_pred EccCCCCcc-ccccc---hhhcc---------cC------CCceEEe--------CCCC-CHHHHHHHHHHHHHHHHHh-
Confidence 1110 0000 00000 00000 00 0000000 0001 1234566766655555433
Q ss_pred ccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCcc
Q psy11344 259 SAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKDL 300 (586)
Q Consensus 259 ~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~~ 300 (586)
+|..+.++||++|++|+ |++|||+.|++...+-+
T Consensus 310 -------g~~G~~~vDf~~~~dg~-~vlEIN~~PG~t~~S~~ 343 (373)
T 3lwb_A 310 -------DCRGLARVDFFLTDDGP-VINEINTMPGFTTISMY 343 (373)
T ss_dssp -------TCCSEEEEEEEEETTEE-EEEEEESSCCCSTTSHH
T ss_pred -------CCccEEEEEEEEECCCC-EEEEecCCCCCCcccHH
Confidence 23457899999999999 99999999999766543
No 27
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=98.06 E-value=7.8e-06 Score=85.63 Aligned_cols=38 Identities=18% Similarity=0.485 Sum_probs=32.1
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh--------ccchhhhhhhcc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV--------YESNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~--------~~~~~ivQ~YI~ 145 (586)
-.+|+||..++.|.|+.++++.+++. ....++||+||+
T Consensus 186 ~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~ 231 (367)
T 2pvp_A 186 FPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQ 231 (367)
T ss_dssp SCEEEEESSCCTTTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCT
T ss_pred CCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 47999999999999999999887754 245789999995
No 28
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=98.00 E-value=4.9e-05 Score=81.52 Aligned_cols=50 Identities=20% Similarity=0.338 Sum_probs=39.0
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccCccccCCceeeeeEEEEEe
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKNPLLIGGYKFDLRLYVCVP 164 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~ 164 (586)
-.+|+||..|+.|+|+.++++.+++.. ...++||+||+.| -++.+.++..
T Consensus 157 ~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-------~e~~v~v~~d 220 (446)
T 3ouz_A 157 YPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNP-------RHIEVQVIGD 220 (446)
T ss_dssp SSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSC-------EEEEEEEEEC
T ss_pred CCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCC-------cEEEEEEEEc
Confidence 469999999999999999999887641 4679999999743 2566666544
No 29
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=97.96 E-value=7.3e-06 Score=85.46 Aligned_cols=50 Identities=14% Similarity=0.188 Sum_probs=20.7
Q ss_pred ceEEEcCCCCC-CCCceEEecCchhhh-------ccchhhhhhhccCccccCCceeeeeEEEEEe
Q psy11344 108 NVWICKPVGQS-QGRGILLFQRLSELV-------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVP 164 (586)
Q Consensus 108 ~~wIvKP~~gs-~G~GI~l~~~~~~i~-------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~ 164 (586)
-.+|+||..++ .|+|+.++++.+++. ....++||+||+. |+ ++++.++..
T Consensus 127 ~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~lvEe~i~~-----g~--e~sv~~~~d 184 (365)
T 2z04_A 127 LPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNHDKEESFIIEEFVKF-----EA--EISCIGVRD 184 (365)
T ss_dssp -CEEEECC------------------------------CEEEECCCC-----SE--EEEEEEEEC
T ss_pred CCEEEEEcCCCcCCCCeEEECCHHHHHHHHHHhccCCCEEEEccCCC-----CE--EEEEEEEEC
Confidence 46999999999 999999998877654 2457899999962 33 677776654
No 30
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=97.96 E-value=4.6e-05 Score=81.80 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=38.3
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccCccccCCceeeeeEEEEEe
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKNPLLIGGYKFDLRLYVCVP 164 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~ 164 (586)
-.+|+||..++.|+|+.++++.+++.. ...++||+||+.+ -++++.++..
T Consensus 152 ~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-------~e~~v~v~~~ 215 (451)
T 1ulz_A 152 YPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENP-------KHIEYQVLGD 215 (451)
T ss_dssp SSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSC-------EEEEEEEEEC
T ss_pred CCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCC-------eEEEEEEEEc
Confidence 469999999999999999999877531 3578999999732 2566666654
No 31
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=97.92 E-value=2.5e-05 Score=82.49 Aligned_cols=48 Identities=21% Similarity=0.459 Sum_probs=33.7
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc----------cchhhhhhhccCccccCCceeeeeEEE
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY----------ESNAVVQQYVKNPLLIGGYKFDLRLYV 161 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~----------~~~~ivQ~YI~~PlLi~g~KFDlR~yv 161 (586)
-.+|+||..|+.|+|+.++++.+++.. ...++||+||+ |.-|++.+++
T Consensus 145 ~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~------g~e~sv~~~~ 202 (403)
T 4dim_A 145 LPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIE------GYEFGAQAFV 202 (403)
T ss_dssp SSEEEECSCC-----CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCC------SEEEEEEEEE
T ss_pred CCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccC------CcEEEEEEEE
Confidence 469999999999999999999887641 35689999996 5667776654
No 32
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=97.92 E-value=4.5e-05 Score=80.07 Aligned_cols=49 Identities=24% Similarity=0.324 Sum_probs=36.7
Q ss_pred ceEEEcCCCCC-CCCceEEecCchhhhc------cchhhhhhhccCccccCCceeeeeEEEEE
Q psy11344 108 NVWICKPVGQS-QGRGILLFQRLSELVY------ESNAVVQQYVKNPLLIGGYKFDLRLYVCV 163 (586)
Q Consensus 108 ~~wIvKP~~gs-~G~GI~l~~~~~~i~~------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv 163 (586)
-.+|+||..++ .|+|+.++++.+++.. ...+|||+||+- ..++.+.++.
T Consensus 146 ~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~i~g-------~~E~sv~~~~ 201 (377)
T 3orq_A 146 YPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIETSECVAEKYLNI-------KKEVSLTVTR 201 (377)
T ss_dssp SSEEEEESSSCCTTTTEEEECSTTSHHHHHHHHTTSCEEEEECCCE-------EEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcCCCcEEEEccCCC-------CEEEEEEEEE
Confidence 46899999986 8999999999887642 367899999962 1355665553
No 33
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=97.90 E-value=1.6e-05 Score=90.45 Aligned_cols=48 Identities=29% Similarity=0.579 Sum_probs=38.6
Q ss_pred CceEEEcCCCCCCCCceEEec---Cchhhh--------ccchhhhhhhccCccccCCceeeeeEEEE
Q psy11344 107 DNVWICKPVGQSQGRGILLFQ---RLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVC 162 (586)
Q Consensus 107 ~~~wIvKP~~gs~G~GI~l~~---~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvl 162 (586)
+..+|+||..|++|+||.+++ +.+++. ....++||+||. | .|+|+.|+
T Consensus 520 g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~~~~~~~~vlVEefI~------G--~E~~v~Vv 578 (750)
T 3ln6_A 520 DKPIVVKPKSTNFGLGISIFKTSANLASYEKAIDIAFTEDSAILVEEYIE------G--TEYRFFVL 578 (750)
T ss_dssp SSCEEEEETTCCSSSSCEEESSCCCHHHHHHHHHHHHHHCSEEEEEECCC------S--EEEEEEEE
T ss_pred CCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHHHHhhCCcEEEEeccC------C--CEEEEEEE
Confidence 357999999999999999998 555543 246789999995 5 49999886
No 34
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=97.90 E-value=5.9e-05 Score=80.94 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=38.0
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccCccccCCceeeeeEEEEEe
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKNPLLIGGYKFDLRLYVCVP 164 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~ 164 (586)
-.+|+||..|+.|+|+.++++.+++.. ...++||+||+.+ -++++-++..
T Consensus 152 ~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-------~e~~v~v~~~ 215 (451)
T 2vpq_A 152 YPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENF-------RHIEIQIVGD 215 (451)
T ss_dssp SSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSE-------EEEEEEEEEC
T ss_pred CcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCC-------eEEEEEEEEc
Confidence 469999999999999999999876531 3568999999732 2566666654
No 35
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=97.87 E-value=4.6e-05 Score=81.21 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=31.5
Q ss_pred eEEEcCC-CCCCCCceEEecCchhhh------ccchhhhhhhcc
Q psy11344 109 VWICKPV-GQSQGRGILLFQRLSELV------YESNAVVQQYVK 145 (586)
Q Consensus 109 ~wIvKP~-~gs~G~GI~l~~~~~~i~------~~~~~ivQ~YI~ 145 (586)
.+|+||. .|+.|+|+.++++.+++. ...+++||+||+
T Consensus 173 P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~ 216 (419)
T 4e4t_A 173 PGILKTARLGYDGKGQVRVSTAREARDAHAALGGVPCVLEKRLP 216 (419)
T ss_dssp SEEEEESSSCCTTTTEEEECSHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CEEEEecCCCCCCCceEEECCHHHHHHHHHhcCCCcEEEeecCC
Confidence 5899999 899999999999988864 235789999996
No 36
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=97.83 E-value=7.7e-05 Score=78.30 Aligned_cols=50 Identities=26% Similarity=0.396 Sum_probs=34.8
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc------------cchhhhhhhccCccccCCceeeeeEEEEEe
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY------------ESNAVVQQYVKNPLLIGGYKFDLRLYVCVP 164 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~ 164 (586)
-.+|+||..|+.|+|+.++++.+++.. ...++||+||+. | .++++.++..
T Consensus 149 ~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-----g--~E~sv~~~~~ 210 (391)
T 1kjq_A 149 YPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-----D--FEITLLTVSA 210 (391)
T ss_dssp SSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-----S--EEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-----C--eEEEEEEEEe
Confidence 469999999999999999998877531 357899999962 3 3566665543
No 37
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=97.83 E-value=4.1e-05 Score=81.30 Aligned_cols=48 Identities=19% Similarity=0.323 Sum_probs=37.5
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc----------cchhhhhhhccCccccCCceeeeeEEEEE
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY----------ESNAVVQQYVKNPLLIGGYKFDLRLYVCV 163 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~----------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv 163 (586)
-.+|+||..++.|+|+.++++.+++.. ...++||+||+ |+ ++++.++.
T Consensus 137 ~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~------g~--E~sv~~~~ 194 (417)
T 2ip4_A 137 VPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE------GE--EATVLALT 194 (417)
T ss_dssp SSEEEECTTSCSSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC------SC--EEEEEEEE
T ss_pred CCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc------Cc--EEEEEEEE
Confidence 479999999999999999998877541 15789999996 33 66666664
No 38
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=97.83 E-value=3.4e-05 Score=82.18 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=30.8
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc-------------------cchhhhhhhccCccccCCceeeeeEE
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY-------------------ESNAVVQQYVKNPLLIGGYKFDLRLY 160 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~-------------------~~~~ivQ~YI~~PlLi~g~KFDlR~y 160 (586)
-.+|+||..|+.|+|+.++++.+++.. ...+++|+||+ |.-|.+.++
T Consensus 146 ~P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~------G~e~sv~~~ 211 (425)
T 3vot_A 146 YPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFID------GPEFAIETL 211 (425)
T ss_dssp SSEEEEESCC-----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCC------SCEEEEEEE
T ss_pred CcEEEEECCCCCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEec------CcEEEEEEE
Confidence 458999999999999999999887641 24578888885 555555443
No 39
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=97.72 E-value=2.8e-05 Score=79.67 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=17.0
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh----ccchhhhhhhcc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV----YESNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~----~~~~~ivQ~YI~ 145 (586)
-.+|+||..|+.|+|+.++++.+++. ....++||+||+
T Consensus 150 ~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~lvee~i~ 191 (331)
T 2pn1_A 150 LPVFVKPRNGSASIEVRRVETVEEVEQLFSKNTDLIVQELLV 191 (331)
T ss_dssp SCEEEEESBC-----------------------CEEEEECCC
T ss_pred CCEEEEeCCCCCCCCeEEeCCHHHHHHHHHhCCCeEEEecCC
Confidence 47999999999999999999887764 245789999996
No 40
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=97.71 E-value=6e-05 Score=80.16 Aligned_cols=38 Identities=13% Similarity=0.407 Sum_probs=31.4
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhcc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~ 145 (586)
-.+|+||..++.|+|+.++++.+++.. ...++||+||+
T Consensus 138 ~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~ 189 (424)
T 2yw2_A 138 APIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE 189 (424)
T ss_dssp SSEEEEESSCCTTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC
T ss_pred CcEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC
Confidence 479999999999999999999877531 24789999995
No 41
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=97.70 E-value=9.6e-05 Score=78.54 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=36.7
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccCccccCCceeeeeEEEEE
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKNPLLIGGYKFDLRLYVCV 163 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv 163 (586)
-.+|+||..++.|+|+.++++.+++.. ...++||+||+ |+ ++++.++.
T Consensus 138 ~P~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~------g~--E~sv~~~~ 199 (422)
T 2xcl_A 138 APIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS------GE--EFSLMAFV 199 (422)
T ss_dssp SSEEEEESSCGGGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC------SE--EEEEEEEE
T ss_pred CCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc------Cc--EEEEEEEE
Confidence 479999999999999999998877531 25789999985 43 55665554
No 42
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=97.70 E-value=6.7e-05 Score=80.58 Aligned_cols=48 Identities=23% Similarity=0.446 Sum_probs=32.5
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccCccccCCceeeeeEEEEE
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKNPLLIGGYKFDLRLYVCV 163 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv 163 (586)
-.+|+||..++.|+|+.++++.+++.. ...++||+||+ |+ ++.+.++.
T Consensus 159 ~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~------G~--E~sv~~~~ 220 (451)
T 2yrx_A 159 APIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE------GE--EFSFMAFV 220 (451)
T ss_dssp SSEEEEECC----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC------SE--EEEEEEEE
T ss_pred CcEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc------Cc--EEEEEEEE
Confidence 479999999999999999998876531 25789999986 44 45555554
No 43
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=97.69 E-value=8e-05 Score=77.67 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=33.2
Q ss_pred ceEEEcCCCCC-CCCceEEecCchhhhc------cchhhhhhhccCccccCCceeeeeEEEEEe
Q psy11344 108 NVWICKPVGQS-QGRGILLFQRLSELVY------ESNAVVQQYVKNPLLIGGYKFDLRLYVCVP 164 (586)
Q Consensus 108 ~~wIvKP~~gs-~G~GI~l~~~~~~i~~------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~ 164 (586)
-.+|+||..++ .|+|+.++++.+++.. ...++||+||+. |+ ++.+.++..
T Consensus 132 ~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~~-----g~--e~sv~~~~d 188 (369)
T 3aw8_A 132 LPALLKTRRGGYDGKGQALVRTEEEALEALKALGGRGLILEGFVPF-----DR--EVSLLAVRG 188 (369)
T ss_dssp SSEEEEECCC------EEEECSHHHHHHHHTTTCSSSEEEEECCCC-----SE--EEEEEEEEC
T ss_pred CCEEEEEcCCCCCcceEEEECCHHHHHHHHHhcCCCcEEEEEcCCC-----CE--EEEEEEEEC
Confidence 46999999999 9999999999887642 367899999962 43 455555543
No 44
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=97.67 E-value=4.7e-05 Score=81.41 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=36.4
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccCccccCCceeeeeEEEEE
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKNPLLIGGYKFDLRLYVCV 163 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv 163 (586)
-.+|+||..++.|+|+.++++.+++.. ...+|||+||+ |+ ++.+.++.
T Consensus 143 ~PvVvKp~~~~gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~------G~--E~sv~~~~ 204 (431)
T 3mjf_A 143 APIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD------GE--EASFIVMV 204 (431)
T ss_dssp SSEEEEESSSCTTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC------SE--EEEEEEEE
T ss_pred CeEEEEECCCCCCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC------Cc--EEEEEEEE
Confidence 469999999999999999999877531 24688999985 43 55555554
No 45
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=97.66 E-value=9e-05 Score=79.47 Aligned_cols=38 Identities=16% Similarity=0.363 Sum_probs=31.4
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhcc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~ 145 (586)
-.+|+||..++.|+|+.++++.+++.. ...+|||+||+
T Consensus 159 ~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~ 210 (442)
T 3lp8_A 159 LPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE 210 (442)
T ss_dssp SSEEEEESSCCTTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC
T ss_pred CcEEEeECCCCCCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec
Confidence 469999999999999999999877531 24688999985
No 46
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=97.66 E-value=0.00013 Score=77.74 Aligned_cols=38 Identities=13% Similarity=0.234 Sum_probs=25.6
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc------------cchhhhhhhcc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY------------ESNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~------------~~~~ivQ~YI~ 145 (586)
-.+|+||..|+.|+|+.++++.+++.. ...++||+||+
T Consensus 157 ~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~ 206 (433)
T 2dwc_A 157 YPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHID 206 (433)
T ss_dssp SSEEEEECCC------EEECSGGGHHHHHHC---------CCEEEEECCC
T ss_pred CCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCC
Confidence 469999999999999999999877631 35789999996
No 47
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=97.65 E-value=7.6e-05 Score=75.98 Aligned_cols=44 Identities=25% Similarity=0.469 Sum_probs=31.9
Q ss_pred CceEEEcCCCCCCCCceEEecCchhhhccchhhhhhhccCccccCCceeeeeEEEEE
Q psy11344 107 DNVWICKPVGQSQGRGILLFQRLSELVYESNAVVQQYVKNPLLIGGYKFDLRLYVCV 163 (586)
Q Consensus 107 ~~~wIvKP~~gs~G~GI~l~~~~~~i~~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv 163 (586)
...+|+||..|+.|+|+.++++ ....++||+||+ |+ ++++.++.
T Consensus 133 ~~P~vvKP~~g~gs~Gv~~v~~-----~~~~~lvEe~I~------G~--e~sv~v~~ 176 (305)
T 3df7_A 133 DCKFIIKPRTACAGEGIGFSDE-----VPDGHIAQEFIE------GI--NLSVSLAV 176 (305)
T ss_dssp SSSEEEEESSCC----CBCCSS-----CCTTEEEEECCC------SE--EEEEEEEE
T ss_pred CCCEEEEeCCCCCCCCEEEEec-----CCCCEEEEeccC------Cc--EEEEEEEe
Confidence 3569999999999999999987 567899999996 43 56666664
No 48
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=97.64 E-value=0.00033 Score=75.06 Aligned_cols=50 Identities=24% Similarity=0.370 Sum_probs=37.6
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccCccccCCceeeeeEEEEEe
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKNPLLIGGYKFDLRLYVCVP 164 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~ 164 (586)
-.+|+||..++.|+|+.++++.+++.. ...++||+||+.+ -++++-++..
T Consensus 154 ~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-------~e~~v~~~~~ 217 (449)
T 2w70_A 154 YPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENP-------RHVEIQVLAD 217 (449)
T ss_dssp SSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSC-------EEEEEEEEEC
T ss_pred CcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCC-------eEEEEEEEEc
Confidence 469999999999999999998876531 3568999999732 2466666553
No 49
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=97.58 E-value=0.00066 Score=74.83 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=32.0
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc----------cchhhhhhhcc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY----------ESNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~----------~~~~ivQ~YI~ 145 (586)
-.+|+||..|+.|+|+.++++.+++.. ...++||+||+
T Consensus 235 ~PvVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~ 282 (554)
T 1w96_A 235 FPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAG 282 (554)
T ss_dssp SSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCC
T ss_pred CCEEEEECCCCCCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC
Confidence 469999999999999999999877641 35789999996
No 50
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=97.56 E-value=0.00031 Score=77.06 Aligned_cols=130 Identities=9% Similarity=0.087 Sum_probs=71.2
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc----------cchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccC
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY----------ESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREG 177 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~----------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g 177 (586)
-.+|+||..|+.|+|+.++++.+++.. ...++||+||+.| -++.+-++...... .+.++
T Consensus 229 yPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~g~-------rei~V~vl~d~~G~-vv~l~--- 297 (540)
T 3glk_A 229 FPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHA-------RHLEVQILADQYGN-AVSLF--- 297 (540)
T ss_dssp SSEEEEETTCC----EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCSSE-------EEEEEEEEECTTSC-EEEEE---
T ss_pred CcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCC-------cEEEEEEEEcCCCC-EEEEe---
Confidence 468999999999999999999887641 4578999999742 24555555442211 11111
Q ss_pred eeeeecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Q psy11344 178 LARFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASE 257 (586)
Q Consensus 178 ~~R~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~ 257 (586)
.|-|+ ++..+..+.... .. ..-...+.++|.+++.+.+.+.
T Consensus 298 -~rd~s-------------------~qr~~~k~ie~~-----Pa--------------~~l~~~~~~~l~~~a~~~~~al 338 (540)
T 3glk_A 298 -GRDCS-------------------IQRRHQKIVEEA-----PA--------------TIAPLAIFEFMEQCAIRLAKTV 338 (540)
T ss_dssp -EEEEE-------------------EC---CCSEEEE-----SC--------------TTSCHHHHHHHHHHHHHHHHHH
T ss_pred -ceeee-------------------eeecccceEEec-----CC--------------CCCCHHHHHHHHHHHHHHHHHc
Confidence 12221 111111111000 00 0001224455666555544433
Q ss_pred hccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCC
Q psy11344 258 LSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPG 295 (586)
Q Consensus 258 ~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~ 295 (586)
++....++||++|.++++|+||||..|+-.
T Consensus 339 --------G~~G~~~VEf~~d~dg~~~~lEiNpR~~~~ 368 (540)
T 3glk_A 339 --------GYVSAGTVEYLYSQDGSFHFLELNPRLQVE 368 (540)
T ss_dssp --------TCCEEEEEEEEEETTSCEEEEEEECSCCTT
T ss_pred --------CCccceEEEEEEcCCCCEEEEEEECCCCCc
Confidence 122467899999999999999999999753
No 51
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=97.55 E-value=0.00035 Score=77.19 Aligned_cols=130 Identities=9% Similarity=0.087 Sum_probs=75.9
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc----------cchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEEEccC
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY----------ESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFVYREG 177 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~----------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~~~~g 177 (586)
-.+|+||..|+.|+|+.++++.+++.. ...++||+||+.| -++.+-++...... .+.++
T Consensus 245 yPvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g~-------rei~V~vl~D~~G~-vv~l~--- 313 (587)
T 3jrx_A 245 FPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHA-------RHLEVQILADQYGN-AVSLF--- 313 (587)
T ss_dssp SSEEEEETTCCSSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCSC-------EEEEEEEEECSSSC-EEEEE---
T ss_pred CeEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCCC-------cEEEEEEEEcCCCC-EEEEe---
Confidence 468999999999999999999887641 4578999999743 24555555443211 12211
Q ss_pred eeeeecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Q psy11344 178 LARFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLTIASE 257 (586)
Q Consensus 178 ~~R~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~~~~~ 257 (586)
.|-|+ ++..+..+.... .. ..-...+.++|.+++.+.+.+.
T Consensus 314 -~rd~s-------------------iqrr~qk~ie~a-----Pa--------------~~l~~~~~~~i~~~A~~~a~al 354 (587)
T 3jrx_A 314 -GRDCS-------------------IQRRHQKIVEEA-----PA--------------TIAPLAIFEFMEQCAIRLAKTV 354 (587)
T ss_dssp -EEEEE-------------------EESSSCEEEEEE-----SC--------------CSSCHHHHHHHHHHHHHHHHHH
T ss_pred -eeecc-------------------ccccccceeEec-----CC--------------CCCCHHHHHHHHHHHHHHHHHc
Confidence 12221 111111111000 00 0001234455666555544443
Q ss_pred hccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCC
Q psy11344 258 LSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPG 295 (586)
Q Consensus 258 ~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~ 295 (586)
++....++||++|.++++|+||||..|+-.
T Consensus 355 --------Gy~G~~~VEfl~d~dG~~yflEINpRl~~e 384 (587)
T 3jrx_A 355 --------GYVSAGTVEYLYSQDGSFHFLELNPRLQVE 384 (587)
T ss_dssp --------TCCEEEEEEEEECSSSCEEEEEEESSCCTT
T ss_pred --------CCcceeEEEEEEeCCCCEEEEEEeCCCCCc
Confidence 122467899999999999999999999754
No 52
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=97.49 E-value=0.00016 Score=77.73 Aligned_cols=48 Identities=15% Similarity=0.308 Sum_probs=33.3
Q ss_pred ce-EEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccCccccCCceeeeeEEEEE
Q psy11344 108 NV-WICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKNPLLIGGYKFDLRLYVCV 163 (586)
Q Consensus 108 ~~-wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv 163 (586)
-. +|+||..++.|+|+.++++.+++.. ...++||+||+ |+ ++++.++.
T Consensus 164 ~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~------G~--E~sv~~~~ 226 (452)
T 2qk4_A 164 FPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD------GE--EVSCLCFT 226 (452)
T ss_dssp SCEEEEEESBC---CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC------SE--EEEEEEEE
T ss_pred CCeEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC------CC--eEEEEEEE
Confidence 35 9999999999999999998877531 25688999986 33 56665554
No 53
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=97.49 E-value=0.00015 Score=72.59 Aligned_cols=206 Identities=17% Similarity=0.209 Sum_probs=114.7
Q ss_pred eEEEeccCCCCch---hhccCCCCceecccCCCCcccccHHHHHHHHHHHHHhCCCCceeeccccCCccHH-----HHHH
Q psy11344 21 WNLWWRTSGFPVS---HYKQLKNNQYTNHIPKASSICRKDQLTRYLKSMKKIFGSIYNFSPEAYNLPLEYT-----KLVA 92 (586)
Q Consensus 21 ~~l~W~~~~~~~~---~~~~l~~~q~vNh~p~~~~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~lp~e~~-----~~~~ 92 (586)
+-+-+.+++||.+ .|-++..--.||...-...+..|...++.|.+. .-=+|+|..+..+.. +|++
T Consensus 60 ~lisf~s~gfpl~kai~y~~lr~p~~INd~~~q~~~~DK~~~~~iL~~~-------gIPtP~t~~~~rd~~~~~~~~~~e 132 (330)
T 3t7a_A 60 CLISFHSKGFPLDKAVAYAKLRNPFVINDLNMQYLIQDRREVYSILQAE-------GILLPRYAILNRDPNNPKECNLIE 132 (330)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHCCEESBCSTHHHHHTBHHHHHHHHHHT-------TCCCCCEEEECCBTTBGGGSSEEE
T ss_pred EEEEeccCCCcHHHHHHHHHHhCCceeCCHHHHHHHHHHHHHHHHHHHc-------CCCCCCEEEEeCCCCCccccceec
Confidence 3466677788874 244555566889887667778888888777642 124677766644321 0100
Q ss_pred HHHHhhcccCCC--CCCceEEEcCCCCC-----------CCCce-EEecCchh----------hhccchhhhhhhccCcc
Q psy11344 93 ECSRQARNSTYE--NPDNVWICKPVGQS-----------QGRGI-LLFQRLSE----------LVYESNAVVQQYVKNPL 148 (586)
Q Consensus 93 ~~~~~~~~~~~~--~~~~~wIvKP~~gs-----------~G~GI-~l~~~~~~----------i~~~~~~ivQ~YI~~Pl 148 (586)
. +...... .-...+|.||..|+ +|.|- .++++... +.....|++|+||..
T Consensus 133 ~----~d~i~~~g~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~-- 206 (330)
T 3t7a_A 133 G----EDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPT-- 206 (330)
T ss_dssp C----SSEEEETTEEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCC--
T ss_pred c----chhhhhccccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCC--
Confidence 0 0000000 01256999999997 77777 56654331 234578999999974
Q ss_pred ccCCceeeeeEEEEEeeccCcEEEEEccCeeeeecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHH
Q psy11344 149 LIGGYKFDLRLYVCVPSFHPLTIFVYREGLARFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQL 228 (586)
Q Consensus 149 Li~g~KFDlR~yvlv~s~~pl~~y~~~~g~~R~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l 228 (586)
+| -|+|+||+=. --+ ....|.+.. . +. ---+|.+ .+.. .....
T Consensus 207 --~G--~DIRv~vVG~----~vv----~Am~R~sp~---~---~G--~~r~N~~-gG~~------------~~~v~---- 249 (330)
T 3t7a_A 207 --DG--TDVKVYTVGP----DYA----HAEARKSPA---L---DG--KVERDSE-GKEV------------RYPVI---- 249 (330)
T ss_dssp --SS--EEEEEEEEST----TCE----EEEEEECTT---S---SC--BCCBCTT-SCBC------------CEECC----
T ss_pred --CC--ceEEEEEECC----EEE----EEEEEeCCC---C---CC--cEEEcCC-CCce------------eeeec----
Confidence 45 7999999722 111 122444421 0 00 0113433 1100 00001
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHhhccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCCCCCc
Q psy11344 229 RQYLYQNNIQDWLLWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGTNKD 299 (586)
Q Consensus 229 ~~~l~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~~~~~ 299 (586)
+-++.+++..++..+... .+.|+|++.++ ++|+++|||.-|-...+..
T Consensus 250 -------------Lt~eek~iA~kaa~a~G~---------~v~GVDlLrs~-~~~~V~EVNg~~fvk~~~~ 297 (330)
T 3t7a_A 250 -------------LNAREKLIAWKVCLAFKQ---------TVCGFDLLRAN-GQSYVCDVNGFSFVKNSMK 297 (330)
T ss_dssp -------------CCHHHHHHHHHHHHHTTB---------SEEEEEEEEET-TEEEEEEEEESCCCSSCHH
T ss_pred -------------CCHHHHHHHHHHHHHhCC---------ceEEEEEEEEC-CccEEEEeCCCccccCchh
Confidence 113345555554444332 35899999984 6799999999998765543
No 54
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=97.49 E-value=0.001 Score=71.49 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=37.2
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccCccccCCceeeeeEEEEEe
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKNPLLIGGYKFDLRLYVCVP 164 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~ 164 (586)
-.+|+||..|+.|+|+.++++.+++.. ...++||+||+.+ -++++-++..
T Consensus 158 ~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-------~e~~v~v~~~ 221 (461)
T 2dzd_A 158 YPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENP-------KHIEVQILGD 221 (461)
T ss_dssp SCEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSC-------EEEEEEEEEC
T ss_pred CcEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCC-------eEEEEEEEEc
Confidence 469999999999999999998877531 3568999999632 2455555543
No 55
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=97.39 E-value=0.00019 Score=80.88 Aligned_cols=129 Identities=12% Similarity=0.133 Sum_probs=68.7
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEE
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFV 173 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~ 173 (586)
-.+|+||..|+.|+|+.++++.+++.. +..++||+||+.| -++.+-++.... .-.+++
T Consensus 179 yPvvvKp~~G~Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~-------reiev~v~~d~~-G~vv~l 250 (675)
T 3u9t_A 179 YPVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKP-------RHVEIQVFADRH-GHCLYL 250 (675)
T ss_dssp SSBCCBCCC------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSC-------BCEEEEEEECSS-SCEEEE
T ss_pred CcEEEEECCCCCCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCC-------cEEEEEEEEcCC-CCEEEE
Confidence 468999999999999999999887641 3579999999854 244444444321 112222
Q ss_pred EccCeeeeecCCCCCCCCCCCCccccccccccCCCCCCCcccccCCccccCHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q psy11344 174 YREGLARFGTDKFSLANLDNPFAHLTNSSLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWLLWQRISSIIVLT 253 (586)
Q Consensus 174 ~~~g~~R~a~~~y~~~~~~~~~~HLTN~~i~k~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~~~~~~~~~i~~~i~~~ 253 (586)
+ .|-|+- +..+....... . . ... ...+.++|.+++.+.
T Consensus 251 ~----~rd~s~-------------------qr~~qk~ie~~----P-a-------------~~l-~~~~~~~l~~~a~~~ 288 (675)
T 3u9t_A 251 N----ERDCSI-------------------QRRHQKVVEEA----P-A-------------PGL-GAELRRAMGEAAVRA 288 (675)
T ss_dssp E----EEECCC-------------------BSSSSBCEEEE----S-C-------------SSC-CHHHHHHHHHHHHHH
T ss_pred e----ccccce-------------------eeccceEEEEC----C-C-------------CCC-CHHHHHHHHHHHHHH
Confidence 1 122211 11111000000 0 0 001 112445566655554
Q ss_pred HHHhhccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCC
Q psy11344 254 IASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAP 294 (586)
Q Consensus 254 ~~~~~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l 294 (586)
+.+.- ....+++||++|.+|++|+||||..|+-
T Consensus 289 ~~alg--------~~G~~~vEf~~~~dG~~~~iEiNpR~~~ 321 (675)
T 3u9t_A 289 AQAIG--------YVGAGTVEFLLDERGQFFFMEMNTRLQV 321 (675)
T ss_dssp HHHTT--------CCSEEEEECCBCTTSCBCBCEEESSCCT
T ss_pred HHHcC--------CccceEEEEEEcCCCCEEEEeccccccC
Confidence 43331 1246899999999999999999999975
No 56
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=97.35 E-value=0.0013 Score=68.28 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=30.3
Q ss_pred ceEEEcCCC-CCCCCceEEecC--chhhhcc--chhhhhhhcc
Q psy11344 108 NVWICKPVG-QSQGRGILLFQR--LSELVYE--SNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~-gs~G~GI~l~~~--~~~i~~~--~~~ivQ~YI~ 145 (586)
-.+|+||.. |+.|+|+.++++ .+++... ..+|||+||+
T Consensus 115 ~P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~~~~vivEe~I~ 157 (355)
T 3eth_A 115 ELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGIN 157 (355)
T ss_dssp SEEEEEESSSCCTTTTEEEEETTCGGGSCGGGTTTEEEEECCC
T ss_pred CCEEEEecCCCCCCCeEEEEcCCCHHHHHHHhhCCEEEEEccC
Confidence 468999998 589999999999 8876531 1588888886
No 57
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=97.35 E-value=0.00045 Score=74.70 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=32.7
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------------cchhhhhhhccCc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------------ESNAVVQQYVKNP 147 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------------~~~~ivQ~YI~~P 147 (586)
-.+|+||..|+.|+|+.++++.+++.. ...++||+||+.+
T Consensus 175 ~PvVVKP~~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~ 234 (474)
T 3vmm_A 175 TPLILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGE 234 (474)
T ss_dssp SSEEEEESSCCTTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBC
T ss_pred CCEEEEECCCCcCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCc
Confidence 468999999999999999998777531 3578999999754
No 58
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=97.23 E-value=0.00068 Score=71.81 Aligned_cols=50 Identities=12% Similarity=0.144 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCC
Q psy11344 242 LWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPG 295 (586)
Q Consensus 242 ~~~~i~~~i~~~~~~~~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~ 295 (586)
+.+++.+++.+++.+.... ..++-..+++||++|+++ |++||||..|+-.
T Consensus 244 ~~~~i~~~a~~~~~~l~~~---g~~~~G~~~ve~~~~~~g-~~viEiN~R~g~~ 293 (412)
T 1vkz_A 244 TIKKIEELFDKTLWGVEKE---GYAYRGFLYLGLMLHDGD-PYILEYNVRLGDP 293 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHT---TCCCEEEEEEEEEEETTE-EEEEEEESSCCTT
T ss_pred HHHHHHHHHHHHHHHHHhc---CCCcEEEEEEEEEEECCC-cEEEEEecCCCCC
Confidence 4456666666555544211 012336788999999999 9999999999754
No 59
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=97.16 E-value=0.00041 Score=78.31 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=7.7
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccCccccCCceeeeeEEEEEe
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKNPLLIGGYKFDLRLYVCVP 164 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~ 164 (586)
-.+|+||..|+.|+|+.++++.+++.. +..++||+||+.| -++.+-++..
T Consensus 153 yPvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~-------rei~V~v~~d 216 (681)
T 3n6r_A 153 YPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQP-------RHIEIQVLCD 216 (681)
T ss_dssp --------------------------------------------------CCSC-------EEEEEEEECC
T ss_pred CcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCC-------cEEEEEEEEe
Confidence 358999999999999999998877531 3579999999854 3455555543
No 60
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=97.09 E-value=0.00059 Score=77.52 Aligned_cols=48 Identities=25% Similarity=0.538 Sum_probs=38.1
Q ss_pred CceEEEcCCCCCCCCceEEe----cCchhhh--------ccchhhhhhhccCccccCCceeeeeEEEE
Q psy11344 107 DNVWICKPVGQSQGRGILLF----QRLSELV--------YESNAVVQQYVKNPLLIGGYKFDLRLYVC 162 (586)
Q Consensus 107 ~~~wIvKP~~gs~G~GI~l~----~~~~~i~--------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvl 162 (586)
+-.+|+||..|+.|+||.++ ++.+++. ....++||+||. | .|+|+.|+
T Consensus 525 g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~~~~~~vlVEefI~------G--~Ei~v~Vl 584 (757)
T 3ln7_A 525 NRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFREDKEVMVEDYLV------G--TEYRFFVL 584 (757)
T ss_dssp SSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHHHHCSSEEEEECCC------S--EEEEEEEE
T ss_pred CCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHHhcCCcEEEEEcCC------C--cEEEEEEE
Confidence 35799999999999999998 5666643 245789999994 5 48999886
No 61
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=96.99 E-value=0.0018 Score=76.85 Aligned_cols=50 Identities=12% Similarity=0.023 Sum_probs=37.0
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc----------cchhhhhhhccCccccCCceeeeeEEEEEe
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY----------ESNAVVQQYVKNPLLIGGYKFDLRLYVCVP 164 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~----------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~ 164 (586)
-.+|+||..+..|+|+.++++.+++.. ...++||+||..+ + ++.+-|+..
T Consensus 164 ~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G~-----~--E~~v~v~~d 223 (1073)
T 1a9x_A 164 FPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGW-----K--EYEMEVVRD 223 (1073)
T ss_dssp SSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTTS-----E--EEEEEEEEC
T ss_pred CCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCCC-----e--EEEEEEEEe
Confidence 468999999999999999999887641 2468999998632 2 455555543
No 62
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=96.92 E-value=0.0027 Score=75.34 Aligned_cols=38 Identities=8% Similarity=0.201 Sum_probs=22.3
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh----------ccchhhhhhhcc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV----------YESNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~----------~~~~~ivQ~YI~ 145 (586)
-.+|+||..++.|+|+.++.+.+++. ...+++||+||+
T Consensus 710 ~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~ 757 (1073)
T 1a9x_A 710 YPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLD 757 (1073)
T ss_dssp SSEEEEC-------CEEEECSHHHHHHHHHHCC--------EEEBCCT
T ss_pred CCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccC
Confidence 46899999999999999999987764 135789999996
No 63
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=96.88 E-value=0.00032 Score=74.95 Aligned_cols=125 Identities=21% Similarity=0.231 Sum_probs=75.4
Q ss_pred ceecccCCCCcccccHHHHHHHHHHHHHh-CC--CCceeeccccCC-ccHHHHHHHHHHhhcccCCCCCCceEEEcCCCC
Q psy11344 42 QYTNHIPKASSICRKDQLTRYLKSMKKIF-GS--IYNFSPEAYNLP-LEYTKLVAECSRQARNSTYENPDNVWICKPVGQ 117 (586)
Q Consensus 42 q~vNh~p~~~~l~~K~~L~~~l~~~~~~~-~~--~~~~~P~T~~lp-~e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~g 117 (586)
-.+|. ||+..+-.|..++ .|-.+.+.+ ++ ..+.+|.+|.-. .+.+.+++. ...|++||..+
T Consensus 308 ~i~Na-~gsgv~~dKal~a-~Lp~l~~~~lgEe~il~~VpT~~c~~~~~~~~vl~~-------------l~~lViKp~~g 372 (474)
T 3n6x_A 308 TLANA-VGTGVADDKDTYI-YVPEMIRFYLGEEPILSNVPTYQLSKADDLKYVLDN-------------LAELVVKEVQG 372 (474)
T ss_dssp EEESC-TTTHHHHSTTTGG-GHHHHHHHHHCSCCSSEECCCEETTSHHHHHHHHHS-------------GGGEEEEECCC
T ss_pred EEeCC-CchhhhcCcHHHH-HhHHHHHHhCCHhhhccCCCceecCCHHHHHHHHhc-------------hhheEEEecCC
Confidence 35674 5777777777543 234444333 33 345667544332 223333322 26899999999
Q ss_pred CCCCceEEecCchhh---------h-ccchhhhhhhccC---ccccC----CceeeeeEEEEEeeccCcEEEEEccCeee
Q psy11344 118 SQGRGILLFQRLSEL---------V-YESNAVVQQYVKN---PLLIG----GYKFDLRLYVCVPSFHPLTIFVYREGLAR 180 (586)
Q Consensus 118 s~G~GI~l~~~~~~i---------~-~~~~~ivQ~YI~~---PlLi~----g~KFDlR~yvlv~s~~pl~~y~~~~g~~R 180 (586)
+.|.|+.+-...+.- . ....||+|+||.- |.+.+ .+++|+|.|++-. -..++..+|++|
T Consensus 373 ~gg~gv~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~g----~~~~v~pGgltR 448 (474)
T 3n6x_A 373 SGGYGMLVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSG----KTVSLVPGALCR 448 (474)
T ss_dssp E-----EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEES----SSEEECSCCEEE
T ss_pred CCCCceEECCcCCHHHHHHHHHHHHhCCCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEcC----CceEEecceEEE
Confidence 999999886544321 1 2345999999973 23334 4789999999864 237889999999
Q ss_pred eecCC
Q psy11344 181 FGTDK 185 (586)
Q Consensus 181 ~a~~~ 185 (586)
+|..+
T Consensus 449 va~~~ 453 (474)
T 3n6x_A 449 VALRE 453 (474)
T ss_dssp EECST
T ss_pred EecCC
Confidence 99764
No 64
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=96.79 E-value=0.0027 Score=75.70 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=9.2
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccCccccCCceeeeeEEEEEe
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKNPLLIGGYKFDLRLYVCVP 164 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~ 164 (586)
-.+|+||..|+.|+|+.++++.+++.. ...++||+||+.+ + ++.+-++..
T Consensus 172 yPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~gg-----~--EisV~vl~D 235 (1165)
T 2qf7_A 172 YPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERA-----R--HVESQILGD 235 (1165)
T ss_dssp ------------------------------------------------CCCSSE-----E--EEEEEEEEC
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCC-----c--EEEEEEEEc
Confidence 468999999999999999998776531 3568999999742 2 455555543
No 65
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=96.58 E-value=0.0048 Score=64.12 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCcceEEeeeeeecCCCCeEEEcccCCCCCC
Q psy11344 244 QRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPG 295 (586)
Q Consensus 244 ~~i~~~i~~~~~~~~~~~~~~~~~Fel~G~D~liD~~~kpwLlEVN~~P~l~ 295 (586)
+++.+++.+.+.+...-++ +.....+++++.++.+|+++++|||..|+=.
T Consensus 269 ~~a~~~a~~v~~al~~~~~--~~~~G~~~vE~fvt~dg~i~V~EIapR~gGg 318 (361)
T 2r7k_A 269 PQVFEMGDKLVAKAKELVP--PGMIGPFCLQSLCNENLELVVFEMSARVDGG 318 (361)
T ss_dssp HHHHHHHHHHHHHHHHHST--TCCCEEEEEEEEECTTSCEEEEEEESSBCGG
T ss_pred HHHHHHHHHHHHHHHhhcc--CCccceEEEEEEEcCCCCEEEEEEcCCCCCC
Confidence 4555555555544432222 1456789999999999999999998887654
No 66
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=96.55 E-value=0.002 Score=66.71 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=28.4
Q ss_pred CceEEEcCCCCCCCCceEEecCchhhh-ccchhhhhhhcc
Q psy11344 107 DNVWICKPVGQSQGRGILLFQRLSELV-YESNAVVQQYVK 145 (586)
Q Consensus 107 ~~~wIvKP~~gs~G~GI~l~~~~~~i~-~~~~~ivQ~YI~ 145 (586)
.-.+|+||..|+.|+|+.++++.+++. ....+++|+||.
T Consensus 125 g~P~vvKp~~g~g~~gv~~v~~~~~~~~~~~~~~~ee~i~ 164 (363)
T 4ffl_A 125 KPPYFVKPPCESSSVGARIIYDDKDLEGLEPDTLVEEYVE 164 (363)
T ss_dssp SSCEEEECSSCCTTTTCEEEC------CCCTTCEEEECCC
T ss_pred CCCEEEEECCCCCCcCeEEeccHHHhhhhccchhhhhhcc
Confidence 456999999999999999999988765 356788899985
No 67
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=96.39 E-value=0.0047 Score=73.47 Aligned_cols=40 Identities=25% Similarity=0.447 Sum_probs=25.2
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccCc
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKNP 147 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~P 147 (586)
-.+|+||..|+.|+|+.++++.+++.. ...++||+||+.|
T Consensus 156 yPvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~ 209 (1150)
T 3hbl_A 156 FPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNP 209 (1150)
T ss_dssp SSEEEECCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSC
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCC
Confidence 468999999999999999998877531 3578999999854
No 68
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=96.31 E-value=0.011 Score=70.50 Aligned_cols=50 Identities=10% Similarity=0.182 Sum_probs=5.5
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhh--------------ccchhhhhhhccCccccCCceeeeeEEEEEe
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELV--------------YESNAVVQQYVKNPLLIGGYKFDLRLYVCVP 164 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~--------------~~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~ 164 (586)
-.+|+||..|+.|+|+.++++.+++. ....++||+||+.+ -++.+-++..
T Consensus 181 yPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G~-------rEisV~vl~D 244 (1236)
T 3va7_A 181 YPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNA-------RHVEIQMMGD 244 (1236)
T ss_dssp ----------------------------------------------------CC-------EEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCCC-------eEEEEEEEec
Confidence 45899999999999999999877753 13569999999742 3455555543
No 69
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=96.08 E-value=0.0055 Score=62.53 Aligned_cols=38 Identities=21% Similarity=0.415 Sum_probs=19.7
Q ss_pred CceEEEcCCCCCCCCceEEecCchhhhcc-----chhhhhhhcc
Q psy11344 107 DNVWICKPVGQSQGRGILLFQRLSELVYE-----SNAVVQQYVK 145 (586)
Q Consensus 107 ~~~wIvKP~~gs~G~GI~l~~~~~~i~~~-----~~~ivQ~YI~ 145 (586)
+-..|+||..++.|+|++++++ +++... ..+|||+||.
T Consensus 125 ~~PviVKp~~g~ggkG~~~v~~-eel~~~~~~~~~~~IiEEfI~ 167 (320)
T 2pbz_A 125 DELYFVRIEGPRGGSGHFIVEG-SELEERLSTLEEPYRVERFIP 167 (320)
T ss_dssp SCCEEEECC------------C-EECSCCCC----CCEEEECCC
T ss_pred CCcEEEEECCCCCCCCEEEECh-HHHHHHHHhcCCCEEEEeeec
Confidence 3579999999999999999999 887521 4689999996
No 70
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.16 E-value=0.0085 Score=50.10 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=31.3
Q ss_pred ceEEEcCCCCCCCCceEEecCchhhhc--------------cchhhhhhhccC
Q psy11344 108 NVWICKPVGQSQGRGILLFQRLSELVY--------------ESNAVVQQYVKN 146 (586)
Q Consensus 108 ~~wIvKP~~gs~G~GI~l~~~~~~i~~--------------~~~~ivQ~YI~~ 146 (586)
-.+|+||..++.|+|+.++++.+++.. ...++||+||+-
T Consensus 46 ~P~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g 98 (108)
T 2cqy_A 46 YPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDN 98 (108)
T ss_dssp SSEEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSS
T ss_pred CCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCC
Confidence 468999999999999999998776531 246788888863
No 71
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A
Probab=94.90 E-value=0.033 Score=59.15 Aligned_cols=70 Identities=9% Similarity=-0.152 Sum_probs=49.1
Q ss_pred CCeEeEEEEEccccCCccchHHHHHHHccccc-------cCcchhhhcccccCceec-CCCcCcccccCCCccccchhhH
Q psy11344 489 NKLSKEIFRKNEKQCDDELNFLLQTSLGMKTE-------VNLSPALANDCEVDPAVK-KPMLHDMFDLLGLPVCNTGLSL 560 (586)
Q Consensus 489 ~~~~~~v~lD~~KAFD~V~~~~L~~~L~~~G~-------~~~~~~l~~~~~~~~~V~-~g~~s~~f~~~g~~~~~~~~~~ 560 (586)
...-+++=+|+++-||+|+|+.|++.|+..+. ..++...+.... |. +|.... +..|+||++..+|+
T Consensus 242 ~G~~yVVDaDIkkFFDnINHdkLLk~L~~~i~~IlDk~Il~LIkk~Lka~L----V~igGk~y~--qekGTPQGGVISPL 315 (596)
T 3kyl_A 242 QGQIYGIKVDIRDAYGNVKIPVLCKLIQSIPTHLLDSEKKNFIVDHISNQF----VAFRRKIYK--WNHGLLQGDPLSGC 315 (596)
T ss_dssp CSCCEEEEEEESSTTTTCCHHHHHHHHTTSCTTTSCHHHHHHHHHHHHCEE----EESSSSEEE--ECSSSCBTCTTHHH
T ss_pred CCCeEEEeeEHHhhCCCCCHHHHHHHHHhhccccccHHHHHHHHHHHhhCe----EEECCEEEe--cCCcccCCcchhHH
Confidence 34467999999999999999999999988762 223333332221 34 554322 45899999999998
Q ss_pred HHHH
Q psy11344 561 FTLW 564 (586)
Q Consensus 561 ~~~~ 564 (586)
++=.
T Consensus 316 LANI 319 (596)
T 3kyl_A 316 LCEL 319 (596)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 72
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=85.49 E-value=0.71 Score=51.00 Aligned_cols=75 Identities=17% Similarity=0.126 Sum_probs=48.5
Q ss_pred CcccccHHHHHHHHHHHHHhCCCCceeeccccCCccHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEecCch
Q psy11344 51 SSICRKDQLTRYLKSMKKIFGSIYNFSPEAYNLPLEYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLS 130 (586)
Q Consensus 51 ~~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~lp~e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~ 130 (586)
..+.+|..|.-.... ++.. +++|+|+.-+.. . +. + .-||+||..|..|.||.+++...
T Consensus 493 ~llsNKailalLw~l----~p~h-p~LLpT~f~~~~-~--l~---~-----------~~yV~KPi~gReG~nV~i~~~~~ 550 (619)
T 2io8_A 493 VIPGNKAILPILWSL----FPHH-RYLLDTDFTVND-E--LV---K-----------TGYAVKPIAGRCGSNIDLVSHHE 550 (619)
T ss_dssp GTTTSTTHHHHHHHH----STTC-TTCCCEESSCCH-H--HH---H-----------HCEEEEETTCCTTTTCEEECTTS
T ss_pred HHhhhHHHHHHHHHh----CCCC-CCCCCeeecCCc-c--cc---c-----------CCEEEccCCCCCCCCEEEEeCCC
Confidence 347888887765432 3432 356667633332 1 11 1 35999999999999999997622
Q ss_pred hh-h------ccchhhhhhhccCc
Q psy11344 131 EL-V------YESNAVVQQYVKNP 147 (586)
Q Consensus 131 ~i-~------~~~~~ivQ~YI~~P 147 (586)
+. . ..+.+|.|+|+.-|
T Consensus 551 ~~~~~~~~~y~~~~~IyQe~~~lp 574 (619)
T 2io8_A 551 EVLDKTSGKFAEQKNIYQQLWCLP 574 (619)
T ss_dssp CEEEECCCTTTTSCEEEEECCCCC
T ss_pred hhHhhccccccCCCeEEEEecCCC
Confidence 11 1 24678999999866
No 73
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=76.31 E-value=1.5 Score=48.59 Aligned_cols=75 Identities=12% Similarity=-0.017 Sum_probs=33.2
Q ss_pred CcccccHHHHHHHHHHHHHhCCCCceeeccccCCccHHHHHHHHHHhhcccCCCCCCceEEEcCCCCCCCCceEEecCch
Q psy11344 51 SSICRKDQLTRYLKSMKKIFGSIYNFSPEAYNLPLEYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLS 130 (586)
Q Consensus 51 ~~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~lp~e~~~~~~~~~~~~~~~~~~~~~~~wIvKP~~gs~G~GI~l~~~~~ 130 (586)
..+.+|..|.-. -. .++.. +++++||.-+.. ... + ..|++||..|-.|.||.+.+.-.
T Consensus 508 ~LlsNKaiLalL-W~---l~p~h-p~LLpt~f~~~~---~~~---~-----------~~yV~KPi~gReG~nV~I~~~~~ 565 (652)
T 2vob_A 508 VIPSNKAILPMI-YH---NHPEH-PAILKAEYELTD---ELR---K-----------HGYAKKPIVGRVGSNVIITSGDG 565 (652)
T ss_dssp GTTTSTTHHHHH-HH---HCTTC-TTBCCEESSCCH---HHH---H-----------HCEEEEECC--------------
T ss_pred HhhcCHHHHHHH-Hh---cccCC-CCCCchhhcCCC---ccc---c-----------CCeEeccCCCCCCCCEEEEcCCc
Confidence 356788777653 22 24443 456666633332 111 1 35999999999999999986533
Q ss_pred hh----h---ccchhhhhhhccCc
Q psy11344 131 EL----V---YESNAVVQQYVKNP 147 (586)
Q Consensus 131 ~i----~---~~~~~ivQ~YI~~P 147 (586)
+. . ..+.+|+|+|++-|
T Consensus 566 ~~~~~~~g~y~~~~~IyQe~~~lp 589 (652)
T 2vob_A 566 VVHAESGGKYGKRNMIYQQLFELK 589 (652)
T ss_dssp -------------CEEEEECCC--
T ss_pred hhhhhcccccCCCCeEEEecccCC
Confidence 21 1 24689999999855
No 74
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=60.73 E-value=13 Score=38.10 Aligned_cols=145 Identities=17% Similarity=0.152 Sum_probs=88.9
Q ss_pred CCcccccHHHHHHHHHHHHHhCCC--------CceeeccccCC-----------ccHHHHHHHHHHhhcccCCCCCCceE
Q psy11344 50 ASSICRKDQLTRYLKSMKKIFGSI--------YNFSPEAYNLP-----------LEYTKLVAECSRQARNSTYENPDNVW 110 (586)
Q Consensus 50 ~~~l~~K~~L~~~l~~~~~~~~~~--------~~~~P~T~~lp-----------~e~~~~~~~~~~~~~~~~~~~~~~~w 110 (586)
.+.--||..-++.+.+..+.|.+. ..++=..=-+. +..+++++..++..+.... +.....
T Consensus 202 GW~~RrKS~HF~~Y~~va~eFa~~~~IDPWlInp~F~~c~~vdF~~~~G~~~La~~Vd~lL~kIr~KY~eygI-~~~PfV 280 (432)
T 3k1t_A 202 GWATRRKSNHFTAYDRVVEEFAPLIDIDPWLLNPYFDTCGGLDFHARLGEEQLAEKVDSLLAKIRRKYAEYGV-KQEPFV 280 (432)
T ss_dssp TGGGSCTTHHHHHHHHHHHHHHHHHTCCGGGGCCCEEEEECCCTTSSTTHHHHHHHHHHHHHHHHHHHHHHTC-CSCCCE
T ss_pred CcchhhccchHHHHHHHHHHHHHHhCCCcccccHhhhccCCcccCccccHHHHHHHHHHHHHHHHHHHHHhCC-CCCceE
Confidence 355668888888888887776531 11111111110 1123344444332222222 235678
Q ss_pred EEcCCCCCCCCceEEecCchhhhc-----------------cchhhhhhhccCccccCCceeeeeEEEEEeeccCcEEEE
Q psy11344 111 ICKPVGQSQGRGILLFQRLSELVY-----------------ESNAVVQQYVKNPLLIGGYKFDLRLYVCVPSFHPLTIFV 173 (586)
Q Consensus 111 IvKP~~gs~G~GI~l~~~~~~i~~-----------------~~~~ivQ~YI~~PlLi~g~KFDlR~yvlv~s~~pl~~y~ 173 (586)
|||..+|.-|.||+-+++.+++.. -...|||+.|..=-.++|..-.==+|++-. |
T Consensus 281 ~VKADaGTYGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmid~-------~- 352 (432)
T 3k1t_A 281 IVKADAGTYGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYTFEHLKDAVAEPVIYMMDH-------F- 352 (432)
T ss_dssp EEEEECGGGCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCCCEEETTEEEEEEEEEETT-------E-
T ss_pred EEEcCCCCCCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecCcchhhhhCCccccceEEEECC-------E-
Confidence 999999999999999999988741 146899999964334455544444444311 1
Q ss_pred EccCeeeeecCCCCCCCCCCCCcccccccc
Q psy11344 174 YREGLARFGTDKFSLANLDNPFAHLTNSSL 203 (586)
Q Consensus 174 ~~~g~~R~a~~~y~~~~~~~~~~HLTN~~i 203 (586)
.-+|+-|+-++.=.-+|++...||..-.+.
T Consensus 353 vvGgFyRvh~~rg~dENLNapGm~F~plaf 382 (432)
T 3k1t_A 353 VVGGFYRVHTSRGADENLNAPGMHFEPLTF 382 (432)
T ss_dssp EEEEEEEEESCCSTTTTTSCCTTCEEEEEC
T ss_pred EEEEEEEecCCCCCccCCCCCCCEeeeccc
Confidence 126788999888777899888888765553
No 75
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=46.99 E-value=5.5 Score=38.00 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=28.0
Q ss_pred ceEEEcCCCC-----CCCCceEE-ecCchhhhc-----------------cchhhhhhhcc
Q psy11344 108 NVWICKPVGQ-----SQGRGILL-FQRLSELVY-----------------ESNAVVQQYVK 145 (586)
Q Consensus 108 ~~wIvKP~~g-----s~G~GI~l-~~~~~~i~~-----------------~~~~ivQ~YI~ 145 (586)
-.+++||..+ +.|.|+.+ +++.+++.. ...++||+||.
T Consensus 57 ~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~vlVEe~i~ 117 (238)
T 1wr2_A 57 YPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVAPMLK 117 (238)
T ss_dssp SSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEEEECCC
T ss_pred CCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHHhhhhhCCCCccceEEEEECCC
Confidence 4689999998 66778888 688776531 14678888885
No 76
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=36.04 E-value=37 Score=26.71 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=46.6
Q ss_pred CHHHHHHHHhccCCCCCCCCCCchHHHHHhchhh-hHHHHHHHHHHHHhCCCCCcccccc-eeeecCCCC
Q psy11344 363 TMQEIENAIKRLKNNKTPGSDEITSELLKKGGST-IKEELHKLITKCWKEEIIPNKWKER-KPLFHNTAR 430 (586)
Q Consensus 363 t~~Ev~~ai~~lk~~kApG~DgI~~~~lk~~~~~-l~~~L~~lfn~~~~~g~~P~~Wk~a-~~I~K~k~~ 430 (586)
.+.|++..|-.+-... |+||+.+.|...-+. -.+......|.++..|++- -+|.+ .++++.+..
T Consensus 11 ~~~~ie~~IL~l~~~~---P~GItd~~L~~~~p~~~~~~r~~aIN~LL~~gkie-l~K~~~~liYr~k~~ 76 (81)
T 2dk8_A 11 DPVEIENRIIELCHQF---PHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLD-LLRSNTGLLYRIKDS 76 (81)
T ss_dssp CHHHHHHHHHHHHHHC---SSCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSEE-EEECSSSEEEEECCC
T ss_pred cHHHHHHHHHHHHHhC---CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHcCCeE-EEecCCeEEEEeccc
Confidence 3566666665554332 799999999876665 6688999999999999886 44554 778876654
No 77
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=34.08 E-value=3.2 Score=36.35 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=11.3
Q ss_pred CCCeEEEcccCCCCCCCCCcccccccccc
Q psy11344 280 SLNPWLLESQPDTAPGTNKDLRLGTWNVQ 308 (586)
Q Consensus 280 ~~kpwLlEVN~~P~l~~~~~~d~~~~nv~ 308 (586)
+++|||-|++.+||-...+..-.-|.+|.
T Consensus 105 dl~pwl~ei~~~p~~~~~~~~v~ntdpvs 133 (144)
T 4e9m_A 105 DLRPWLLEIGFSPSLLTQSKVVVNTDPVS 133 (144)
T ss_dssp GGHHHHHHTTCC-----------------
T ss_pred chhHHHHHhCCCcHHHhcccceecCCchH
Confidence 58999999999999876554433344443
No 78
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=21.55 E-value=91 Score=27.70 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=35.3
Q ss_pred CCCCCCHHHHHHHHhccCCCCCCCCCCchHHHHHhchhhhHHHHHHHHHHH
Q psy11344 358 EDEPPTMQEIENAIKRLKNNKTPGSDEITSELLKKGGSTIKEELHKLITKC 408 (586)
Q Consensus 358 ~~~p~t~~Ev~~ai~~lk~~kApG~DgI~~~~lk~~~~~l~~~L~~lfn~~ 408 (586)
+-..||++||..||.. .| |+.|..-||.-|+.+.+.+..+-...
T Consensus 25 Ek~GfspEEV~aAl~~------~g-~~~P~~WLk~ewp~ll~~V~~la~~~ 68 (162)
T 4dbg_B 25 EAAGACPEEIFSALQY------SG-TEVPLQWLRSELPYVLEMVAELAGQQ 68 (162)
T ss_dssp CCSCCCHHHHHHHHHH------HT-CCCCHHHHHHHSCSHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHh------cC-CCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457899999999944 24 67899999999999988877776655
Done!