RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11344
(586 letters)
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB:
3tii_A* 3tin_A*
Length = 380
Score = 245 bits (627), Expect = 5e-76
Identities = 79/339 (23%), Positives = 136/339 (40%), Gaps = 52/339 (15%)
Query: 1 VCVERGWREYDCNSLKDNNNWNLWWRTSGFPVSHY--KQLKNNQYTNHIPKASSICRKDQ 58
+ W+ +DN +NL + Q N+ A +CRK
Sbjct: 24 LLASGQWKRLK----RDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKAS 79
Query: 59 LTRYLKSMKKI------FGSIYNFSPEAYNLPL-----------------EYTKLVAECS 95
L + +K+ ++ F Y P P E + + +
Sbjct: 80 LVKLIKTSPELTETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFN 139
Query: 96 RQARNSTYENPDNVWICKPVGQSQGRGILLFQRLSELV-----YESNAVVQQYVKNPLLI 150
++ N NVWI K ++G GIL+ +EL+ V+Q+Y+++PLL+
Sbjct: 140 KKKEN----EEGNVWIAKSSSGAKGEGILISSDATELLDFIDNQGQVHVIQKYLESPLLL 195
Query: 151 --GGYKFDLRLYVCVPSFHPLTIFVYREGLARFGTDKFSLANLDNPFAHLTNSSLNKLGP 208
G KFD+R +V V + I++YREG+ R ++ +S N + +HLTN + K
Sbjct: 196 EPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSDTNFQDMTSHLTNHCIQK--- 250
Query: 209 GYGTTKERVGSGCKWSLSQLRQYLYQNNIQDW--LLWQRISSIIVLTIAS---ELSAIPQ 263
+ R G + + QYL + + + +I II + ++ +S
Sbjct: 251 EHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKYL 310
Query: 264 TKNCFEFFGFDILVDSSLNPWLLE--SQPDTAPGTNKDL 300
+ F+ FGFD +VD +L WL+E P A +L
Sbjct: 311 PYHSFQLFGFDFMVDKNLKVWLIEVNGAPACAQKLYAEL 349
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 71.2 bits (174), Expect = 6e-13
Identities = 100/625 (16%), Positives = 187/625 (29%), Gaps = 248/625 (39%)
Query: 26 RTSGFPVS-----HYKQLKNNQYTNHIPKAS-SICRKDQLTRYLKSMKKIFGSIYNFSPE 79
V QL+ Q+ +P+ + D+ T +P
Sbjct: 17 EHV-LLVPTASFFIASQLQE-QFNKILPEPTEGFAADDEPT----------------TPA 58
Query: 80 AYNLPLEYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILLFQRLSELVYESN-- 137
L ++ V+ ++ ++ +L L+E +E+
Sbjct: 59 --ELVGKFLGYVSSLVEPSKVGQFDQ------------------VLNLCLTE--FENCYL 96
Query: 138 ------AVVQQYVK-NPLLIGGYKFDLRLYVCVPSFHPLTIFVYREGLARFGTDKFSLAN 190
A+ + ++ N + K ++ Y AR +
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNY-------------IT---ARIMAKR----- 135
Query: 191 LDNPFAHLTNSSL--------NKL----GPGYGTTKERVGSGCKWSLSQLRQ-Y-LYQNN 236
PF +NS+L +L G G G T + + +LR Y Y
Sbjct: 136 ---PFDKKSNSALFRAVGEGNAQLVAIFG-GQGNTDD-------Y-FEELRDLYQTYHVL 183
Query: 237 IQDWLLWQRISSIIVLTIASELSAIPQTKNCFEFFGFDILVDSSLNPWLLESQPDTAPGT 296
+ D + + + + SEL G +IL WL P P
Sbjct: 184 VGDLI--KFSAETL-----SELIRTTLDAEKVFTQGLNIL------EWL--ENPSNTPDK 228
Query: 297 NKDLR--------LGTWNVQTLH----------KPGAFDNLIMEASRYNLDIL---AIQE 335
+ L +G +Q H PG + + A+ ++ ++ AI E
Sbjct: 229 D-YLLSIPISCPLIGV--IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 336 TR-----------------WIGTEQEQQT---EEITP----ETAEVEDEPPT-M------ 364
T +IG + + P ++ E + P+ M
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRC-YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 365 --QEIENAIKRLKNNKTPGSDEITSEL-LKKG-------GSTIKEELHKLITKCWKEEI- 413
+++++ + + N+ P ++ E+ L G G + L+ L K +
Sbjct: 345 TQEQVQDYVNKT-NSHLPAGKQV--EISLVNGAKNLVVSGPP--QSLYGLNLTLRKAKAP 399
Query: 414 -------IPNKWKERKPLFHN-----TARTFRSS--------------KQSNKWGNGKDW 447
IP + ERK F N + F S K + + N KD
Sbjct: 400 SGLDQSRIP--FSERKLKFSNRFLPVASP-FHSHLLVPASDLINKDLVKNNVSF-NAKDI 455
Query: 448 SKIEPNEGNWTRIYPYTYPDQTDNVDSDKALRNIAFNVAKFNKLSKEIFRKN---EKQCD 504
+I P +Y D D D LR ++ ++++ ++ I R E
Sbjct: 456 -QI-P-------VY-----DTFDGSD----LRVLSGSISE--RIVDCIIRLPVKWETTTQ 495
Query: 505 DELNFLL------QTSLGMKTEVNL 523
+ +L + LG+ T N
Sbjct: 496 FKATHILDFGPGGASGLGVLTHRNK 520
Score = 32.7 bits (74), Expect = 0.43
Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 43/102 (42%)
Query: 83 LPLEYT-KLVAECSR-----------QARNSTYE----NPDNV----------WICKPVG 116
+ +E ++V R + S Y NP V ++ + VG
Sbjct: 1777 MSIESLVEVVFY--RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 117 QSQGRGILLFQRLSELV-YESNAVVQQYVKNPLLIGGYKFDL 157
+ G ++ E+V Y N QQYV G L
Sbjct: 1835 KRTG-WLV------EIVNY--NVENQQYV-----AAGDLRAL 1862
Score = 32.3 bits (73), Expect = 0.49
Identities = 22/116 (18%), Positives = 34/116 (29%), Gaps = 24/116 (20%)
Query: 307 VQTLHKPGAFDNLIM---EASRYNLDILAIQETR---WIGTEQEQQ-TEEITPETAE-VE 358
V+ + G + + E R N ++AI R E Q E + T VE
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE 1842
Query: 359 ---DEPPTMQ--------EIENAIKRLKNNKTPGSDEITSELLKKGGST--IKEEL 401
Q ++ L K I L+K S ++ L
Sbjct: 1843 IVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQK---IDIIELQKSLSLEEVEGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 1e-08
Identities = 57/372 (15%), Positives = 109/372 (29%), Gaps = 142/372 (38%)
Query: 12 CNS--LKDNNNWNLWWRTSGFPVSHYKQLKNNQYTNHIPKASSICRKDQLTRYLKSMKKI 69
C S ++ ++ ++W + + + L+ +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLK----------------------NCNSPETVLEMLQKLLYQ 208
Query: 70 FGSIYNFSPE-AYNLPLEYTKLVAECSRQARNSTYENP----DNVWI----------CKP 114
+ + + N+ L + AE R ++ YEN NV CK
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK- 267
Query: 115 VGQSQGRGILLFQRLSELVYESNAVVQQYVKNPLL-------------------IGGYKF 155
ILL R ++ + + + L +
Sbjct: 268 --------ILLTTRFKQVT---DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 156 DLRLYVCVPSFHPLTIFV----YREGLARFGTDKFSLANLDNPFAHLTNSSLNKLGPGYG 211
DL V + +P + + R+GLA + D + N D + SSLN L P
Sbjct: 317 DLPREVL--TTNPRRLSIIAESIRDGLATW--DNWKHVNCDK-LTTIIESSLNVLEP--- 368
Query: 212 TTKERVGSGCKWSLSQLRQYLYQN--------NIQDWLL---WQRISSIIVLTIASELSA 260
++ R+ + +I LL W + V+ + ++
Sbjct: 369 --------------AEYRKM-FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK--- 410
Query: 261 IPQTKNCFEFFGFDILVDSSLNPWLLESQPD----TAPGTNKDLRLGTWNVQTLHKPGAF 316
L S L+E QP + P +L++ N LH+
Sbjct: 411 ---------------LHKYS----LVEKQPKESTISIPSIYLELKVKLENEYALHR---- 447
Query: 317 DNLIMEASRYNL 328
+++ YN+
Sbjct: 448 -SIV---DHYNI 455
Score = 41.4 bits (96), Expect = 0.001
Identities = 73/526 (13%), Positives = 146/526 (27%), Gaps = 171/526 (32%)
Query: 206 LGPGYGTTKERVGSGCKWSLSQLRQYLYQNN----------------------IQDWLLW 243
L Y + + + R Y+ Q + ++ LL
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 244 QRISSIIVL---------TIASELSAIPQTKNCFEFFGF-----------DIL------- 276
R + +++ +A ++ + + +F F +L
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 277 --VDSSLNPWLLESQPDTAP-----GTNKDLRL--------------GTWNVQTLHKPGA 315
+D + + RL N + + A
Sbjct: 207 YQIDPNWTS--RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN---A 261
Query: 316 FDN----LIMEASRYNLDILAIQETRWIGTEQEQQTEEITPETAE---------VEDEPP 362
F+ L+ + D L+ T I + T E +D P
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPR 320
Query: 363 TMQEIENAIKRLKNNKTPGSDEITSELLKKGGSTIK-------EELHKLITKCWKEEIIP 415
+ P I +E ++ G +T ++L +I + P
Sbjct: 321 EVLTT-----------NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL-NVLEP 368
Query: 416 NKWKERKPLFHNTARTFR-SSKQSNK-----WGNGK------------DWSKIEPNEGNW 457
E + +F + F S+ W + +S +E
Sbjct: 369 A---EYRKMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 458 TRIYPYTYPDQTDNVDSDKAL-RNI--AFNVAK---FNKLSKE-----IFR------KNE 500
T P Y + ++++ AL R+I +N+ K + L + KN
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 501 KQCDD---------ELNFLLQTSLGMKTEVNLSPALAND-----------CEVDPAVKKP 540
+ + + FL Q T N S ++ N C+ DP ++
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER- 543
Query: 541 MLHDMFDLLGLPVCNTGLSLFTLWTSLAQRHYTTEETKLSHEDKSQ 586
+++ + D LP L + + +T L + E+ + E Q
Sbjct: 544 LVNAILDF--LPKIEENL-ICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 36.8 bits (84), Expect = 0.022
Identities = 40/342 (11%), Positives = 89/342 (26%), Gaps = 86/342 (25%)
Query: 311 HKPGAFDNLIMEASRYNLDILAIQETRWIGTEQEQQTEEITPE---TAEVE---DEPPTM 364
H D E DIL++ E ++ + +++ E++ +
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 365 QEIENAIKRLKNNKTPGSDEITSELLKKGGSTIKEELHKLITKCWKEEIIPNKWKERKPL 424
L + + + E+L+ + + T+ + ++ + E++
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK---TEQRQPSMMTRMYIEQRDR 118
Query: 425 FHNTARTF------RSSK-----------QSNKW-------GNGKDW--------SKIE- 451
+N + F R + K G+GK W K++
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 452 --PNEGNW----------------TRIYPYTYPDQTDNVDSDKALRNIAFNVAKFNKLSK 493
+ W ++ P+ T D ++ + + + +L +
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-LRIHSIQ-AELRR 236
Query: 494 EIFRKNEKQC----DD-----ELN-FLLQTSLGMKTEVNLSPALANDCEVDPAVKKPMLH 543
+ K + C + N F +L K + D L
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAF----NLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 544 DMFDLLGLPVCNTGLSLFTLWTSLAQRHYTTEETKLSHEDKS 585
L SL + L E +
Sbjct: 293 HHSMTLTPD---EVKSLLLKYLD-------CRPQDLPREVLT 324
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein;
2.40A {Bombyx mori} SCOP: d.151.1.1
Length = 245
Score = 40.3 bits (93), Expect = 9e-04
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 288 SQPDTAPGTNKDLRLGTWNVQTLHKPGAFDNLIMEASRYNLDILAIQETRWIGTEQ 343
+ P R+ N+Q K A L +EA+ I IQE G +
Sbjct: 8 TTAKVRPKNGPPYRVLQANLQ--RKKLATAELAIEAATRKAAIALIQEPYVGGAKS 61
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II,
nysgrc., structural genomics, protein structure
initiative; 1.87A {Archaeoglobus fulgidus}
Length = 305
Score = 35.8 bits (82), Expect = 0.029
Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 5/83 (6%)
Query: 103 YENPDNVWICKPVGQSQGRGILLFQRLSELVYESNAVVQQYVKNPLLIGGYKFDLRLYVC 162
D +I KP G GI + + + Q++++ L +
Sbjct: 129 LRPLDCKFIIKPRTACAGEGIGFSDEVPD-----GHIAQEFIEGINLSVSLAVGEDVKCL 183
Query: 163 VPSFHPLTIFVYREGLARFGTDK 185
+ + F Y +
Sbjct: 184 SVNEQIINNFRYAGAVVPARISD 206
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.084
Identities = 5/19 (26%), Positives = 9/19 (47%), Gaps = 4/19 (21%)
Query: 277 VDSSLNPWLLESQPDTAPG 295
+ +SL + D+AP
Sbjct: 25 LQASLKLY----ADDSAPA 39
Score = 31.8 bits (71), Expect = 0.25
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 500 EKQCDDELNFLLQTSLGMKTEVNLSPALANDCEVD 534
EKQ L LQ SL + + + +PALA ++
Sbjct: 18 EKQ---ALK-KLQASLKLYAD-DSAPALAIKATME 47
Score = 31.5 bits (70), Expect = 0.36
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 13/41 (31%)
Query: 64 KSMKKIFGSIYNFSPEAYNLPLEYTKLVAECSRQARNSTYE 104
+++KK+ S+ ++ ++ P L A +T E
Sbjct: 20 QALKKLQASLKLYADDS--AP----AL-------AIKATME 47
>3eo5_A Resuscitation-promoting factor RPFB; cell adhesion, crystal; 1.83A
{Mycobacterium tuberculosis} PDB: 1xsf_A
Length = 171
Score = 33.5 bits (76), Expect = 0.092
Identities = 16/119 (13%), Positives = 38/119 (31%), Gaps = 11/119 (9%)
Query: 339 IGTEQEQQTEEITPETAEVEDEPPTMQEIENAIKRLKNNKTPGSDEITSELLKKGGSTIK 398
++ + + P VED P M + +++ PG+ ++T + + G
Sbjct: 4 NRIKKVTERLPLPPNARRVED--PEMNMSR---EVVEDPGVPGTQDVTFAVAEVNGVETG 58
Query: 399 -EELHKLITKCWKEEIIPNKWKERKPLFHNTARTFRSSKQSNKWGNGKDWSKIEPNEGN 456
+ ++ E ++ + + G +W+ N GN
Sbjct: 59 RLPVANVVVTPAHEAVV--RVGTKPGTEVPPVIDGSIWDAIAGCEAGGNWA---INTGN 112
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 34.1 bits (77), Expect = 0.12
Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 15/88 (17%)
Query: 82 NLPLEYTKLVAECSRQARNSTYENPDNVWICKPVGQSQGRGILL------FQRLSELVYE 135
L E L+ + + + K G G + FQ ++ +V
Sbjct: 239 KLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVAL 298
Query: 136 --SNAVVQQYVKNPLLIGGYKFDLRLYV 161
+ A + ++ K+D+R+
Sbjct: 299 TKTYATAEPFID-------AKYDVRVQK 319
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1
type, retrotransposition, retrotransposon, transferase;
1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Length = 238
Score = 33.3 bits (77), Expect = 0.14
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 10/62 (16%)
Query: 295 GTNKDLRLGTWNV---QTLHKPGAFDNLIMEASRYNLDILAIQETRWIGTEQEQQTEEIT 351
G+N + + T N+ + K + I + + IQET + T +
Sbjct: 3 GSNSHITILTLNINGLNSAIKRHRLASWI---KSQDPSVCCIQETH----LTCRDTHRLK 55
Query: 352 PE 353
+
Sbjct: 56 IK 57
>2ykz_A Cytochrome C'; electron transport, haemoprotein, 4-helix bundle;
HET: PCA HEC; 0.84A {Achromobacter xylosoxidans} PDB:
3zqv_A* 2xlm_A* 1e83_A* 1e84_A* 1e86_A* 1e85_A* 2yld_A*
2yli_A* 1cgo_A* 2xle_A* 2xm0_A* 2xlw_A* 2xld_A* 2xm4_A*
2xlo_A* 2yl0_A* 2yl1_A* 2ylg_A* 3zqy_A* 2xl6_A* ...
Length = 127
Score = 32.3 bits (73), Expect = 0.15
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 10/87 (11%)
Query: 411 EEIIPNKWKERKPLFHNTARTFRSSKQSNKWGNGKDWSKIEPNEGN---WTRIYPYTYPD 467
E+ + K R+ A F K D +I+ N + + +
Sbjct: 6 EDAV----KYRQSALTLMASHFGRMTPVVKGQAPYDAVQIKANVEVLKTLSALPWAAFGP 61
Query: 468 QTDNVDSDKALRNIAFNVAKFNKLSKE 494
T+ A I + A F + +
Sbjct: 62 GTEGG---DARPEIWSDAASFKQKQQA 85
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha
beta sandwich, gene regulation; 2.00A {Bombyx mori}
Length = 240
Score = 33.5 bits (75), Expect = 0.16
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 300 LRLGTWNVQTLHKPGAFDNLIMEASRYNLDILAIQETRWIGTEQEQQT 347
LR+G N+ A L A LDI+ +QE + Q
Sbjct: 8 LRIGQINLG--GAEDATRELPSIARDLGLDIVLVQEQYSMVGFLAQCG 53
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3,
structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus}
SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B*
2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Length = 260
Score = 33.6 bits (76), Expect = 0.16
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 300 LRLGTWNVQTL-----HKPGAFDNLIMEASRYNLDILAIQE 335
L++ +N++T ++ RY DI+ IQE
Sbjct: 1 LKIAAFNIRTFGETKMSNATLASYIVRIVRRY--DIVLIQE 39
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia,
vesicle T structural genomics, structural genomics
consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo
sapiens}
Length = 344
Score = 32.1 bits (72), Expect = 0.55
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 15/66 (22%)
Query: 104 ENPDNVWICKPVGQSQGRGILL------FQRLSELVYESN--AVVQQYVKNPLLIGGYKF 155
P + K G G + FQ ++ +V + A + ++ K+
Sbjct: 166 TAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFID-------SKY 218
Query: 156 DLRLYV 161
D+R+
Sbjct: 219 DIRIQK 224
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence,
DNA damage, genotoxin, cytotoxins, cell cycle,
apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP:
d.151.1.1 PDB: 2f2f_B
Length = 261
Score = 31.8 bits (71), Expect = 0.56
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 298 KDLRLGTWNVQ-----TLHKPGAF-DNLIMEASRYNLDILAIQETRWIGTEQEQQTEEIT 351
D ++ TWN+Q K L+ DIL +QE + + + + I
Sbjct: 3 SDFKVATWNLQGSSAVNESKWNINVRQLLSGEQG--ADILMVQEAGSLPSSAVRTSRVIQ 60
Query: 352 PETAEVED 359
+E+
Sbjct: 61 HGGTPIEE 68
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium,
metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Length = 554
Score = 31.7 bits (71), Expect = 0.70
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 348 EEITPETAEVEDEPPTMQEIENAIKRLKNNKTPGSDEITSE--------LLKKGGSTIKE 399
+ +TPET + P + + I R ++ + E +++ G T +E
Sbjct: 423 DIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQE 482
Query: 400 ---ELHKLITKCWKE 411
+K + WK+
Sbjct: 483 AYDVFNKHVESAWKD 497
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A
{Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A*
2o3c_A
Length = 285
Score = 30.7 bits (70), Expect = 1.3
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 283 PWLLESQPD---TAPGTNKDLRLGTWNVQTL---HKPGAFDNLIMEASRYNLDILAIQET 336
P L E PD + G L++ +WNV L K D + DIL +QET
Sbjct: 9 PALYEDPPDQKTSPSGKPATLKIASWNVDGLRAWIKKKGLDWV----KEEAPDILCLQET 64
Query: 337 R 337
+
Sbjct: 65 K 65
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding
domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha
magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana
tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A*
1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Length = 550
Score = 30.1 bits (67), Expect = 2.0
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 11/75 (14%)
Query: 348 EEITPETAEVEDEPPTMQEIENAIKRLKNNKTPGSDEITSE--------LLKKGGSTIKE 399
+ T + E + P + E I R+ ++ E + ++ G + KE
Sbjct: 418 KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKE 477
Query: 400 ---ELHKLITKCWKE 411
+ + WK+
Sbjct: 478 AMAKFQNMAETAWKD 492
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair,
endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens}
SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Length = 318
Score = 29.6 bits (67), Expect = 2.6
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 289 QPDTAPGTNKDLRLGTWNVQTL---HKPGAFDNLIMEASRYNLDILAIQETR 337
Q + G L++ +WNV L K D + DIL +QET+
Sbjct: 51 QKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWV----KEEAPDILCLQETK 98
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, hydrolase; 1.40A {Bacillus cereus}
SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Length = 306
Score = 29.7 bits (66), Expect = 2.9
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 8/53 (15%)
Query: 291 DTAPGTNKDLRLGTWNVQTLHKPGA--------FDNLIMEASRYNLDILAIQE 335
+ + N L++ T NV L D + N D++ + E
Sbjct: 1 EVSTTQNDTLKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNE 53
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 29.5 bits (67), Expect = 3.6
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 507 LNFLLQTSLG--MKTE--VNLSPALANDCE 532
L +LLQ SL KT VN+SP+ ++ E
Sbjct: 298 LTYLLQYSLTGDSKTLMFVNISPSSSHINE 327
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania
major}
Length = 467
Score = 29.3 bits (65), Expect = 3.8
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
Query: 287 ESQPDTAPGTNKDLRLGTWNVQTL-----HKPGAFDNLIMEASRYNLDILAIQETR 337
D+ ++ + TWNV L A + D+L +QET+
Sbjct: 137 RRTTDSDFDPSRMYKFITWNVAGLRGLLKKNASALRAFMEAE---KPDVLCLQETK 189
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 29.1 bits (66), Expect = 3.9
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 507 LNFLLQTSLG--MKTE--VNLSPALANDCE 532
L +LLQ SL KT VN+ P + E
Sbjct: 301 LTYLLQYSLVGDSKTLMFVNIPPDPNHISE 330
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase;
1.95A {Salvia fruticosa}
Length = 569
Score = 29.4 bits (65), Expect = 4.0
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 11/77 (14%)
Query: 346 QTEEITPETAEVEDEPPTMQEIENAIKRLKNNKTPGSDEI-------TSELLKKGGSTIK 398
T+ I E AE + + I RL ++ DE+ + + + +
Sbjct: 437 LTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASE 496
Query: 399 EE----LHKLITKCWKE 411
EE + LI + WK
Sbjct: 497 EEAREHVRSLIDQTWKM 513
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 29.2 bits (66), Expect = 4.2
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 363 TMQEIENAIKRLKNNKTPGSDEITSELLKKGGSTIKEELHKLITKCWKEEIIPNKWKERK 422
E ++L K + + + +KE + +++ + ++I K K
Sbjct: 73 VDALREKIKQKLVGKKVRIGTDKGKIIEEA----VKEAVSEILETSRRIDLIEEIRKAEK 128
Query: 423 P 423
P
Sbjct: 129 P 129
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase,
isomerase; 2.30A {Abies grandis}
Length = 785
Score = 29.4 bits (65), Expect = 4.2
Identities = 10/76 (13%), Positives = 22/76 (28%), Gaps = 12/76 (15%)
Query: 348 EEITPETAEVEDEPPTMQEIENAIKRLKNNKTPGSDEITSE---------LLKKGGSTIK 398
E +T E D ++ RL N+ E + + +
Sbjct: 654 EVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEE 713
Query: 399 E---ELHKLITKCWKE 411
E ++ ++ +E
Sbjct: 714 EALQHVYSVMENALEE 729
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 28.8 bits (65), Expect = 4.8
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 507 LNFLLQTSLG--MKTE--VNLSPALANDCE 532
L +LLQ SLG K VN+SP N E
Sbjct: 333 LTYLLQNSLGGSAKMLMFVNISPLEENVSE 362
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 28.8 bits (65), Expect = 5.0
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 507 LNFLLQTSLG--MKTE--VNLSPALANDCE 532
L LL SLG KT +N+SP E
Sbjct: 339 LTHLLMPSLGGNSKTLMFINVSPFQDCFQE 368
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 28.8 bits (65), Expect = 5.0
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 507 LNFLLQTSLG--MKTE--VNLSPALANDCE 532
L +LLQ SL KT VN+SP+ ++ E
Sbjct: 354 LTYLLQYSLTGDSKTLMFVNISPSSSHINE 383
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A
{Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A*
3k55_A
Length = 317
Score = 28.9 bits (64), Expect = 5.1
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
Query: 287 ESQPDTAPGTNKDLRLGTWNVQTLHKPGAFDN-------LIMEASR-YNLDILAIQE 335
+ + DL+L + NV L + LI ++S N D++ E
Sbjct: 17 RGSHMESKKDDTDLKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNE 73
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase,
geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl
diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB:
2onh_A*
Length = 543
Score = 29.0 bits (64), Expect = 5.3
Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 348 EEITPETAEVEDEPPTMQEIENAIKRLKNNKTPGSDEITSE--------LLKKGGSTIKE 399
+ T ET + + + + + RL ++ +E++ + ++ E
Sbjct: 412 DSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAE 471
Query: 400 ---ELHKLITKCWKE 411
+ LI + WK+
Sbjct: 472 ARKHVKWLIAEVWKK 486
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I,
microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Length = 262
Score = 28.6 bits (63), Expect = 5.4
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 298 KDLRLGTWNVQ------TLHKPGAFDNLIMEASRYNLDILAIQETRWIGTEQEQQTEEIT 351
D R+ TWN+Q LI + +DILA+QE + I
Sbjct: 14 TDFRVATWNLQGASATTESKWNINVRQLISGENA--VDILAVQEAGSPPSTAVDTGRVIP 71
Query: 352 PETAEVED 359
V +
Sbjct: 72 SPGIPVRE 79
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin,
hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Length = 301
Score = 28.5 bits (63), Expect = 5.8
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 11/56 (19%)
Query: 288 SQPDTAPGTNKDLRLGTWNVQTLHKPGA--------FDNLIMEASRYNLDILAIQE 335
D PG ++ + NV + D + N D++ + E
Sbjct: 2 QASDEYPGN---FKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNE 54
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, TIM-barrel,
alpha-beta-alpha sandwich; HET: MSE; 2.25A
{Synechococcus SP} PDB: 3sqm_A*
Length = 535
Score = 28.6 bits (64), Expect = 6.0
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 122 GILLFQRLSELVYESNAVVQQYVKNPLLIG 151
G++L + V + +Q + + PLLI
Sbjct: 60 GVILLGGSAAEVAQKTKQLQSWAEIPLLIA 89
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 28.3 bits (64), Expect = 6.6
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 507 LNFLLQTSLG--MKTE--VNLSPALANDCE 532
L +LLQ SL KT V +SP N E
Sbjct: 285 LTYLLQDSLSGDSKTLMVVQVSPVEKNTSE 314
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA;
tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 28.6 bits (65), Expect = 7.0
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 364 MQEIENAIKRLKNNKTPGSDEITSELLKKGGSTIKEE 400
++ IE +RLK+ S E +E+ + + E
Sbjct: 492 LENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSRE 528
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 28.2 bits (64), Expect = 8.8
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 364 MQEIENAIKRLKNNK-TPGSDEITSELLKKGGSTIKEE--LHKLI 405
++ +++ ++ +K K TP EI + L+ KG +K LI
Sbjct: 486 IKRVQHCLEVMKTAKVTP--AEINTLLMNKGLQELKTPARALSLI 528
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.410
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,884,843
Number of extensions: 515647
Number of successful extensions: 1185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1159
Number of HSP's successfully gapped: 56
Length of query: 586
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 487
Effective length of database: 3,937,614
Effective search space: 1917618018
Effective search space used: 1917618018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)