RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11344
(586 letters)
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse
transcriptase homolog {Human (Homo sapiens) [TaxId:
9606]}
Length = 236
Score = 38.2 bits (87), Expect = 0.002
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 295 GTNKDLRLGTWNVQTLHKPGAFDNLIMEASRYNLDILAIQETRW 338
G+N + + T N+ L+ L + + IQET
Sbjct: 1 GSNSHITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHL 44
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon
(ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}
Length = 228
Score = 35.4 bits (80), Expect = 0.012
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 300 LRLGTWNVQTLHKPGAFDNLIMEASRYNLDILAIQETRWIGTEQ 343
R+ N+Q K A L +EA+ I IQE G +
Sbjct: 3 YRVLQANLQ--RKKLATAELAIEAATRKAAIALIQEPYVGGAKS 44
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 33.1 bits (74), Expect = 0.074
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 298 KDLRLGTWNVQ----TLHKPGAFDNLIMEASRYNLDILAIQETR 337
D R+ TWN+Q T + + + +DILA+QE
Sbjct: 3 TDFRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAG 46
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B
{Haemophilus ducreyi [TaxId: 730]}
Length = 261
Score = 32.5 bits (72), Expect = 0.12
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 298 KDLRLGTWNVQTL--HKPGAFDNLIMEA--SRYNLDILAIQETR 337
D ++ TWN+Q ++ + + DIL +QE
Sbjct: 3 SDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAG 46
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus)
[TaxId: 9913]}
Length = 260
Score = 32.3 bits (71), Expect = 0.15
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 300 LRLGTWNVQTL-----HKPGAFDNLIMEASRYNLDILAIQETR 337
L++ +N++T ++ RY DI+ IQE R
Sbjct: 1 LKIAAFNIRTFGETKMSNATLASYIVRIVRRY--DIVLIQEVR 41
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex
lectularius) [TaxId: 79782]}
Length = 280
Score = 31.5 bits (70), Expect = 0.21
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 294 PGTNKDLRLGTWNVQTLHKPGAFDNLIMEASRYNLDILAI--QETRW 338
P + +WN P + L+ S D++A+ Q +
Sbjct: 1 PPAQLSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGF 47
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 275
Score = 30.4 bits (67), Expect = 0.51
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 282 NPWLLESQPDTAPGTNKDLRLGTWNVQTL---HKPGAFDNLIMEASRYNLDILAIQETR 337
+P ++ P P T L++ +WNV L K D + DIL +QET+
Sbjct: 4 DPPDQKTSPSGKPAT---LKICSWNVDGLRAWIKKKGLDWV----KEEAPDILCLQETK 55
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 28.7 bits (64), Expect = 1.6
Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 18/123 (14%)
Query: 443 NGKDWSKIEPNEGNWTRIYPYTYPDQTDNVDSDK-ALRNIAFNVAKFNKLSKEIFRKNEK 501
+G++ + + +E R Q N+ S + N+A + N E+ R+ +
Sbjct: 65 DGQELTTLSESELTKAR-RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTE 123
Query: 502 -----QCDDELN-FLLQTSLGMKTEVNLSPALANDCEV----------DPAVKKPMLHDM 545
D+ + + S G K V ++ ALA++ +V DPA + +L +
Sbjct: 124 LLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183
Query: 546 FDL 548
D+
Sbjct: 184 KDI 186
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C
{Listeria ivanovii [TaxId: 1638]}
Length = 293
Score = 28.8 bits (62), Expect = 1.8
Identities = 6/45 (13%), Positives = 15/45 (33%), Gaps = 8/45 (17%)
Query: 299 DLRLGTWNVQTLHKPGA--------FDNLIMEASRYNLDILAIQE 335
+ ++ + NV + D + N D++ + E
Sbjct: 4 NFKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNE 48
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia
chrysanthemi [TaxId: 556]}
Length = 342
Score = 28.9 bits (64), Expect = 1.9
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Query: 207 GPGYGTTKERVGSGCKW-SLSQLRQYLYQNNIQDWLLWQ 244
G G +K+R + + +Q +Y + DW
Sbjct: 308 GAGAAVSKDR-----RQLTDAQAAEYTQSKVLGDWTPTL 341
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 345
Score = 28.6 bits (63), Expect = 1.9
Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 16/93 (17%)
Query: 296 TNKDLRL--GTWNVQTLHKPGAFDNLIMEASRYNLDILAIQETRWIGTEQEQQTEEITPE 353
+K++++ ++N+ +N + + DI + +EI
Sbjct: 21 EHKNVKIFVASYNLNGCSATTKLENWLFPENTPLADIYVV------------GFQEIVQL 68
Query: 354 TAE--VEDEPPTMQEIENAIKRLKNNKTPGSDE 384
T + + +P +E E+ +KRL N K
Sbjct: 69 TPQQVISADPAKRREWESCVKRLLNGKCTSGPG 101
>d1pbya4 b.1.18.14 (A:352-489) Quinohemoprotein amine dehydrogenase
A chain, domains 4 and 5 {Paracoccus denitrificans
[TaxId: 266]}
Length = 138
Score = 27.5 bits (61), Expect = 2.4
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 290 PDTAPGTNKDLRLG----TWNVQTLHKPGAFDN 318
PD PGT D+ LG +W +
Sbjct: 39 PDGQPGTGDDIALGAFPASWATDNFDEEAEKMQ 71
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C
{Bacillus cereus [TaxId: 1396]}
Length = 299
Score = 27.7 bits (59), Expect = 4.6
Identities = 20/140 (14%), Positives = 36/140 (25%), Gaps = 10/140 (7%)
Query: 297 NKDLRLGTWNVQTLHKPGAFD-------NLIMEASR-YNLDILAIQE--TRWIGTEQEQQ 346
N L++ T NV L + +LI A N D++ + E
Sbjct: 1 NDTLKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGN 60
Query: 347 TEEITPETAEVEDEPPTMQEIENAIKRLKNNKTPGSDEITSELLKKGGSTIKEELHKLIT 406
++ P V + + + G I S+
Sbjct: 61 LKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKGCGPD 120
Query: 407 KCWKEEIIPNKWKERKPLFH 426
+ + K K+ H
Sbjct: 121 NLSNKGFVYTKIKKNDRFVH 140
>d2jv3a_ a.60.1.1 (A:) Ets-1 transcription factor pointed domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 26.3 bits (58), Expect = 5.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 379 TPGSDEITSELLKKGGSTIKEELHKL 404
TP S E+ S+ LK S +E +L
Sbjct: 10 TPSSKEMMSQALKATFSGFTKEQQRL 35
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco
(Nicotiana tabacum) [TaxId: 4097]}
Length = 328
Score = 27.2 bits (60), Expect = 5.3
Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 347 TEEITPETAEVEDEPPTMQEIENAIKRLKNNKTPGSDEITSE--------LLKKGGSTIK 398
+ T + E + P + E I R+ ++ E + ++ G + K
Sbjct: 195 MKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTK 254
Query: 399 E---ELHKLITKCWKE 411
E + + WK+
Sbjct: 255 EAMAKFQNMAETAWKD 270
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding
domain {Escherichia coli [TaxId: 562]}
Length = 71
Score = 25.1 bits (55), Expect = 5.9
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 365 QEIENAIKR--LKNNKTPGSDEITSELLKKGGSTIKEELHKLITKCWKEEIIPNKW 418
QE+ + I+ + P EI L + + +E L L K EI+
Sbjct: 8 QEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVI-EIVSGAS 62
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 26.8 bits (59), Expect = 6.7
Identities = 15/124 (12%), Positives = 36/124 (29%), Gaps = 17/124 (13%)
Query: 443 NGKDWSKIEPNEGNWTRIYPYTYPDQTDNVDSDKALRNIAFNVAKFNKLSKEIFRKNEKQ 502
K + E + Q+ + + + K K+ ++ + ++
Sbjct: 63 GDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVRE 122
Query: 503 CDDELN-------FLLQTSLGMKTEVNLSPALANDCEV----------DPAVKKPMLHDM 545
+ L + S G + V L A+ +V D ++ M ++
Sbjct: 123 VAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL 182
Query: 546 FDLL 549
L
Sbjct: 183 KKLQ 186
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III
{Escherichia coli [TaxId: 562]}
Length = 268
Score = 26.6 bits (57), Expect = 8.6
Identities = 7/38 (18%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 301 RLGTWNVQTLH-KPGAFDNLIMEASRYNLDILAIQETR 337
+ ++N+ L +P + ++ ++ D++ +QET+
Sbjct: 2 KFVSFNINGLRARPHQLEAIV---EKHQPDVIGLQETK 36
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli
[TaxId: 562]}
Length = 68
Score = 24.7 bits (54), Expect = 9.0
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 202 SLNKLGPGYGTTKERVGSGCKWSLSQLRQYLYQNNIQDWL 241
+L ++G + T+ER+ +L +LR ++ +L
Sbjct: 27 TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 66
>d1f46a_ d.129.4.1 (A:) Cell-division protein ZipA, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 139
Score = 25.6 bits (56), Expect = 9.8
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 171 IFVYREGLARFGTDKFSLANLDNP 194
I+ G FSLAN+ P
Sbjct: 39 IYHRHLSPDGSGPALFSLANMVKP 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.410
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,243,982
Number of extensions: 106056
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 24
Length of query: 586
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 496
Effective length of database: 1,171,896
Effective search space: 581260416
Effective search space used: 581260416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.2 bits)