Query psy11345
Match_columns 282
No_of_seqs 290 out of 1903
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 16:02:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8t_A Protein (CRP1); LIM dom 99.9 7.6E-26 2.6E-30 189.8 8.1 120 110-231 6-186 (192)
2 2xqn_T Testin, TESS; metal-bin 99.9 1.5E-25 5.3E-30 175.4 9.3 113 161-281 4-118 (126)
3 2xjy_A Rhombotin-2; oncoprotei 99.9 1.8E-25 6.2E-30 176.1 8.5 115 160-281 2-120 (131)
4 2jtn_A LIM domain-binding prot 99.9 3.7E-24 1.3E-28 178.0 9.9 117 158-281 58-174 (182)
5 2rgt_A Fusion of LIM/homeobox 99.9 2.6E-24 8.8E-29 176.9 8.4 116 159-281 5-120 (169)
6 1rut_X Flinc4, fusion protein 99.9 1.6E-24 5.6E-29 181.0 6.5 115 160-281 5-123 (188)
7 2xjy_A Rhombotin-2; oncoprotei 99.9 1.1E-24 3.8E-29 171.6 4.4 108 111-220 2-128 (131)
8 1rut_X Flinc4, fusion protein 99.9 1.5E-24 5E-29 181.4 4.9 140 110-251 4-170 (188)
9 2cup_A Skeletal muscle LIM-pro 99.9 1.4E-23 4.9E-28 157.8 9.3 96 160-255 5-101 (101)
10 2xqn_T Testin, TESS; metal-bin 99.9 1E-23 3.5E-28 165.0 6.1 106 112-219 4-125 (126)
11 2rgt_A Fusion of LIM/homeobox 99.9 3.8E-23 1.3E-27 169.9 7.5 134 110-250 5-156 (169)
12 1b8t_A Protein (CRP1); LIM dom 99.9 1.5E-22 5.1E-27 169.7 8.7 115 158-281 5-167 (192)
13 2jtn_A LIM domain-binding prot 99.9 6.6E-22 2.3E-26 164.4 8.2 108 108-218 57-180 (182)
14 2cup_A Skeletal muscle LIM-pro 99.8 2.5E-19 8.4E-24 134.5 6.3 82 111-194 5-101 (101)
15 1m3v_A FLIN4, fusion of the LI 99.7 4.5E-18 1.5E-22 132.1 4.7 99 160-281 5-107 (122)
16 1j2o_A FLIN2, fusion of rhombo 99.7 2.7E-17 9.3E-22 126.1 5.1 100 111-220 3-107 (114)
17 1j2o_A FLIN2, fusion of rhombo 99.6 1.3E-16 4.6E-21 122.3 6.2 96 159-281 2-99 (114)
18 1m3v_A FLIN4, fusion of the LI 99.6 6.4E-17 2.2E-21 125.5 1.3 102 110-220 4-115 (122)
19 2ehe_A Four and A half LIM dom 99.6 4.7E-16 1.6E-20 112.0 3.3 69 206-282 1-69 (82)
20 2egq_A FHL1 protein; LIM domai 99.6 1.1E-15 3.6E-20 108.8 4.3 68 206-281 1-71 (77)
21 1x3h_A Leupaxin; paxillin fami 99.6 3E-15 1E-19 107.3 5.4 62 163-225 18-79 (80)
22 2ehe_A Four and A half LIM dom 99.6 2.5E-15 8.6E-20 108.2 4.8 67 159-225 2-81 (82)
23 1x63_A Skeletal muscle LIM-pro 99.6 1.7E-15 5.9E-20 109.0 3.9 67 207-281 2-68 (82)
24 2dar_A PDZ and LIM domain prot 99.6 4.7E-15 1.6E-19 108.8 6.3 67 107-175 21-87 (90)
25 2cuq_A Four and A half LIM dom 99.6 3.8E-15 1.3E-19 106.7 5.5 67 159-225 2-79 (80)
26 1iml_A CRIP, cysteine rich int 99.5 8.5E-15 2.9E-19 103.9 5.6 70 162-231 2-72 (76)
27 1x64_A Alpha-actinin-2 associa 99.5 1.4E-14 4.8E-19 106.0 6.9 65 108-174 22-86 (89)
28 2cuq_A Four and A half LIM dom 99.5 3.7E-15 1.3E-19 106.8 3.5 66 206-281 1-66 (80)
29 1x3h_A Leupaxin; paxillin fami 99.5 5.8E-15 2E-19 105.7 3.7 66 206-281 1-66 (80)
30 1x62_A C-terminal LIM domain p 99.5 3.9E-15 1.3E-19 106.5 2.6 65 108-174 12-76 (79)
31 1a7i_A QCRP2 (LIM1); LIM domai 99.5 9.1E-15 3.1E-19 105.0 4.2 73 158-230 5-77 (81)
32 1x6a_A LIMK-2, LIM domain kina 99.5 5.1E-15 1.8E-19 106.3 2.9 67 207-281 2-68 (81)
33 2dlo_A Thyroid receptor-intera 99.5 1.5E-14 5.2E-19 103.9 5.2 65 160-225 15-80 (81)
34 1x63_A Skeletal muscle LIM-pro 99.5 2.4E-14 8.3E-19 103.0 5.9 64 161-224 16-80 (82)
35 1wig_A KIAA1808 protein; LIM d 99.5 1.9E-14 6.6E-19 101.3 5.2 62 111-174 5-67 (73)
36 1x4l_A Skeletal muscle LIM-pro 99.5 3.1E-14 1.1E-18 99.8 5.1 62 111-174 5-70 (72)
37 2d8z_A Four and A half LIM dom 99.5 2.5E-14 8.7E-19 99.7 4.4 63 111-175 5-67 (70)
38 2cur_A Skeletal muscle LIM-pro 99.5 1.9E-14 6.5E-19 100.1 3.5 63 111-175 5-67 (69)
39 1nyp_A Pinch protein; LIM doma 99.5 1.7E-14 5.9E-19 99.4 3.3 61 111-173 5-65 (66)
40 2dlo_A Thyroid receptor-intera 99.5 2E-14 6.9E-19 103.2 3.7 66 206-281 2-67 (81)
41 2d8x_A Protein pinch; LIM doma 99.5 2E-14 7E-19 100.2 3.6 61 111-173 5-65 (70)
42 2dj7_A Actin-binding LIM prote 99.5 5.8E-14 2E-18 100.6 5.7 68 157-225 12-79 (80)
43 1x68_A FHL5 protein; four-and- 99.5 5.9E-14 2E-18 99.5 5.3 67 161-227 6-75 (76)
44 1x68_A FHL5 protein; four-and- 99.4 3.3E-14 1.1E-18 100.8 3.6 63 112-176 6-72 (76)
45 2dj7_A Actin-binding LIM prote 99.4 5.9E-14 2E-18 100.6 4.8 63 110-175 14-77 (80)
46 1v6g_A Actin binding LIM prote 99.4 5.4E-14 1.8E-18 100.9 4.4 54 207-262 2-55 (81)
47 2cu8_A Cysteine-rich protein 2 99.4 1.5E-13 5.3E-18 97.3 6.1 67 159-225 8-75 (76)
48 2cur_A Skeletal muscle LIM-pro 99.4 1.1E-13 3.8E-18 96.1 5.0 65 160-225 5-69 (69)
49 1x6a_A LIMK-2, LIM domain kina 99.4 1E-13 3.6E-18 99.4 5.0 62 163-225 18-81 (81)
50 2d8z_A Four and A half LIM dom 99.4 1.5E-13 5E-18 95.8 5.3 65 160-225 5-69 (70)
51 2cu8_A Cysteine-rich protein 2 99.4 1E-13 3.6E-18 98.2 4.5 63 111-175 9-73 (76)
52 1wyh_A SLIM 2, skeletal muscle 99.4 2.2E-13 7.4E-18 95.4 6.0 66 160-225 5-71 (72)
53 1x4k_A Skeletal muscle LIM-pro 99.4 1.9E-13 6.4E-18 95.7 5.7 65 161-225 6-71 (72)
54 2cor_A Pinch protein; LIM doma 99.4 1.3E-13 4.5E-18 98.5 4.8 62 110-174 14-75 (79)
55 1wyh_A SLIM 2, skeletal muscle 99.4 8.5E-14 2.9E-18 97.5 3.3 63 111-175 5-69 (72)
56 2co8_A NEDD9 interacting prote 99.4 3.4E-13 1.2E-17 97.0 6.2 62 110-173 14-78 (82)
57 1x4k_A Skeletal muscle LIM-pro 99.4 9.6E-14 3.3E-18 97.2 3.0 62 112-175 6-69 (72)
58 1g47_A Pinch protein; LIM doma 99.4 2.2E-13 7.7E-18 96.6 4.9 66 159-224 10-76 (77)
59 1g47_A Pinch protein; LIM doma 99.4 1.2E-13 4E-18 98.1 3.4 64 110-175 10-75 (77)
60 2dar_A PDZ and LIM domain prot 99.4 3.2E-13 1.1E-17 98.9 5.7 66 159-225 24-89 (90)
61 1x64_A Alpha-actinin-2 associa 99.4 3.7E-13 1.3E-17 98.3 6.0 63 161-224 26-88 (89)
62 1x4l_A Skeletal muscle LIM-pro 99.4 3.9E-13 1.3E-17 94.2 5.8 64 160-223 5-71 (72)
63 1iml_A CRIP, cysteine rich int 99.4 1.5E-13 5.2E-18 97.3 3.4 60 112-173 1-62 (76)
64 2d8y_A Eplin protein; LIM doma 99.4 6E-13 2E-17 97.6 6.7 68 158-225 13-80 (91)
65 1nyp_A Pinch protein; LIM doma 99.4 3.3E-13 1.1E-17 92.9 5.0 62 160-222 5-66 (66)
66 1x61_A Thyroid receptor intera 99.4 2E-13 7E-18 95.6 3.4 61 110-172 4-66 (72)
67 2d8y_A Eplin protein; LIM doma 99.4 3.7E-13 1.3E-17 98.7 4.4 72 111-184 15-89 (91)
68 1a7i_A QCRP2 (LIM1); LIM domai 99.4 1.5E-13 5E-18 98.6 2.1 64 110-175 6-70 (81)
69 2l4z_A DNA endonuclease RBBP8, 99.3 7.9E-13 2.7E-17 102.5 5.7 61 110-172 60-123 (123)
70 2d8x_A Protein pinch; LIM doma 99.3 1.3E-12 4.5E-17 90.9 5.9 65 159-224 4-68 (70)
71 1x62_A C-terminal LIM domain p 99.3 3.7E-13 1.3E-17 96.1 3.0 65 159-224 14-78 (79)
72 2iyb_E Testin, TESS, TES; LIM 99.3 4.1E-13 1.4E-17 92.2 2.7 57 112-170 3-64 (65)
73 2egq_A FHL1 protein; LIM domai 99.3 5.4E-13 1.8E-17 94.7 3.0 57 112-170 16-77 (77)
74 2cor_A Pinch protein; LIM doma 99.3 3.6E-12 1.2E-16 90.9 7.3 64 159-224 14-77 (79)
75 1x61_A Thyroid receptor intera 99.3 1.5E-12 5.3E-17 91.0 4.8 66 160-226 5-71 (72)
76 3f6q_B LIM and senescent cell 99.3 1.8E-12 6.3E-17 90.4 4.2 66 155-220 6-72 (72)
77 3f6q_B LIM and senescent cell 99.3 9.6E-13 3.3E-17 91.9 2.6 60 111-172 11-72 (72)
78 2co8_A NEDD9 interacting prote 99.3 2.5E-12 8.5E-17 92.5 4.2 66 158-223 13-80 (82)
79 1wig_A KIAA1808 protein; LIM d 99.3 6.5E-12 2.2E-16 88.2 5.6 61 161-222 6-67 (73)
80 2l4z_A DNA endonuclease RBBP8, 99.2 5.4E-12 1.8E-16 97.7 4.4 60 161-220 62-123 (123)
81 1v6g_A Actin binding LIM prote 99.2 4.7E-12 1.6E-16 90.7 3.7 60 112-173 16-76 (81)
82 2l3k_A Rhombotin-2, linker, LI 99.2 6E-12 2E-16 97.5 4.1 74 161-234 9-84 (123)
83 2l3k_A Rhombotin-2, linker, LI 99.2 7.5E-12 2.6E-16 96.9 3.1 60 215-281 1-62 (123)
84 2iyb_E Testin, TESS, TES; LIM 99.2 2.6E-11 8.9E-16 83.1 5.0 58 161-218 3-64 (65)
85 1zfo_A LAsp-1; LIM domain, zin 97.4 3.2E-05 1.1E-09 44.3 0.6 29 220-249 3-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 97.2 0.0001 3.4E-09 42.2 1.3 27 112-138 4-31 (31)
87 4ap4_A E3 ubiquitin ligase RNF 73.5 0.87 3E-05 33.9 0.6 97 111-233 7-126 (133)
88 3vk6_A E3 ubiquitin-protein li 72.3 5.4 0.00018 28.7 4.5 65 189-260 3-73 (101)
89 4ap4_A E3 ubiquitin ligase RNF 69.0 1 3.5E-05 33.5 0.1 61 189-258 50-123 (133)
90 2djb_A Polycomb group ring fin 69.0 4.5 0.00016 26.6 3.4 44 188-232 16-62 (72)
91 1t1h_A Gspef-atpub14, armadill 67.6 5.4 0.00018 26.6 3.6 46 186-232 7-55 (78)
92 2ecy_A TNF receptor-associated 67.0 3.8 0.00013 26.4 2.7 44 188-232 16-62 (66)
93 2ysl_A Tripartite motif-contai 64.9 4.8 0.00016 26.4 2.8 44 188-232 21-69 (73)
94 1jjd_A Metallothionein, SMTA; 64.0 5.3 0.00018 25.5 2.7 29 189-217 9-38 (55)
95 1jm7_B BARD1, BRCA1-associated 61.8 6.4 0.00022 28.7 3.3 43 188-231 23-66 (117)
96 2ecn_A Ring finger protein 141 55.6 4.2 0.00014 26.5 1.2 43 188-232 16-60 (70)
97 1v9x_A Poly (ADP-ribose) polym 54.8 2.9 0.0001 31.0 0.3 30 221-250 21-60 (114)
98 3l11_A E3 ubiquitin-protein li 53.1 11 0.00037 27.3 3.3 43 188-231 16-61 (115)
99 2ecv_A Tripartite motif-contai 53.0 11 0.00038 25.2 3.1 44 188-232 20-71 (85)
100 2dmj_A Poly (ADP-ribose) polym 52.8 3.5 0.00012 30.1 0.4 30 221-250 26-65 (106)
101 2d8t_A Dactylidin, ring finger 52.0 15 0.0005 23.9 3.5 44 187-231 15-60 (71)
102 1g25_A CDK-activating kinase a 52.0 15 0.00051 23.4 3.5 47 188-234 4-57 (65)
103 2ecw_A Tripartite motif-contai 50.1 9.6 0.00033 25.5 2.4 44 188-232 20-71 (85)
104 2y43_A E3 ubiquitin-protein li 48.6 8.2 0.00028 27.1 1.9 45 187-232 22-69 (99)
105 2vpb_A Hpygo1, pygopus homolog 48.1 5.5 0.00019 26.2 0.8 27 222-248 10-39 (65)
106 1e4u_A Transcriptional repress 47.9 14 0.00048 25.0 2.9 45 188-232 12-62 (78)
107 2yur_A Retinoblastoma-binding 47.9 6.3 0.00022 26.1 1.1 43 188-231 16-63 (74)
108 2egp_A Tripartite motif-contai 47.5 11 0.00039 24.8 2.4 43 188-231 13-64 (79)
109 2gvi_A Conserved hypothetical 47.3 7 0.00024 32.0 1.5 30 188-217 173-202 (204)
110 2csy_A Zinc finger protein 183 44.7 11 0.00037 25.3 2.0 43 188-231 16-60 (81)
111 4ic3_A E3 ubiquitin-protein li 44.5 23 0.00077 23.4 3.5 41 188-231 25-66 (74)
112 4ayc_A E3 ubiquitin-protein li 44.1 16 0.00056 27.3 3.1 43 188-231 54-98 (138)
113 2ckl_A Polycomb group ring fin 43.6 12 0.00041 26.7 2.2 45 187-232 15-62 (108)
114 1uw0_A DNA ligase III; DNA rep 43.0 4.8 0.00016 29.9 -0.2 30 221-250 16-57 (117)
115 2ct2_A Tripartite motif protei 42.7 16 0.00053 24.7 2.6 45 188-232 16-68 (88)
116 1jm7_A BRCA1, breast cancer ty 41.9 13 0.00045 26.4 2.2 44 188-232 22-70 (112)
117 1bor_A Transcription factor PM 41.1 16 0.00056 22.6 2.3 42 188-231 7-48 (56)
118 2ckl_B Ubiquitin ligase protei 40.3 12 0.00041 29.0 1.8 43 188-231 55-101 (165)
119 1iym_A EL5; ring-H2 finger, ub 39.4 34 0.0012 20.6 3.6 24 207-230 28-53 (55)
120 2kre_A Ubiquitin conjugation f 39.3 30 0.001 24.5 3.7 47 185-232 27-75 (100)
121 3od8_A Poly [ADP-ribose] polym 39.1 4.7 0.00016 29.9 -0.7 31 221-251 39-79 (116)
122 1chc_A Equine herpes virus-1 r 39.1 23 0.00079 22.5 2.9 43 189-231 7-51 (68)
123 2ysm_A Myeloid/lymphoid or mix 38.0 33 0.0011 24.7 3.8 28 180-216 76-103 (111)
124 2ect_A Ring finger protein 126 37.8 25 0.00085 23.1 2.9 25 207-231 37-63 (78)
125 2e5r_A Dystrobrevin alpha; ZZ 37.3 29 0.00098 22.5 3.0 38 179-218 5-45 (63)
126 2xeu_A Ring finger protein 4; 37.0 9.3 0.00032 24.0 0.6 46 188-233 4-57 (64)
127 2lo3_A SAGA-associated factor 35.5 13 0.00043 22.2 0.9 14 109-122 15-28 (44)
128 2ecg_A Baculoviral IAP repeat- 35.5 25 0.00086 23.1 2.6 41 188-231 26-67 (75)
129 2kr4_A Ubiquitin conjugation f 34.8 30 0.001 23.5 3.0 47 185-232 12-60 (85)
130 3fl2_A E3 ubiquitin-protein li 34.6 18 0.00063 26.4 2.0 44 188-232 53-99 (124)
131 3lrq_A E3 ubiquitin-protein li 34.3 14 0.00047 26.1 1.2 44 188-232 23-70 (100)
132 3v43_A Histone acetyltransfera 34.0 40 0.0014 24.4 3.7 62 108-189 23-93 (112)
133 2ecm_A Ring finger and CHY zin 33.6 21 0.00071 21.6 1.8 43 188-230 6-53 (55)
134 2cs3_A Protein C14ORF4, MY039 33.4 26 0.00089 24.1 2.3 31 111-141 15-46 (93)
135 1wgm_A Ubiquitin conjugation f 33.3 33 0.0011 24.2 3.1 47 185-232 20-69 (98)
136 3odc_A Poly [ADP-ribose] polym 33.1 7.7 0.00026 28.5 -0.4 30 221-250 20-61 (111)
137 3hcs_A TNF receptor-associated 32.5 26 0.00089 27.1 2.7 43 188-231 19-64 (170)
138 2jrp_A Putative cytoplasmic pr 32.3 68 0.0023 22.0 4.3 29 222-258 33-61 (81)
139 1rmd_A RAG1; V(D)J recombinati 32.0 29 0.001 24.9 2.7 44 188-232 24-70 (116)
140 3ztg_A E3 ubiquitin-protein li 31.6 21 0.00071 24.4 1.7 44 187-231 13-61 (92)
141 2cs2_A Poly [ADP-ribose] polym 31.2 8.4 0.00029 29.3 -0.5 30 221-250 28-69 (134)
142 1z6u_A NP95-like ring finger p 31.2 22 0.00076 27.2 2.0 44 188-232 79-125 (150)
143 2xb1_A Pygopus homolog 2, B-ce 30.6 23 0.00078 25.5 1.8 34 188-227 4-38 (105)
144 3hct_A TNF receptor-associated 29.6 25 0.00084 25.5 1.9 44 188-232 19-65 (118)
145 2dmi_A Teashirt homolog 3; zin 29.2 7.4 0.00025 27.6 -1.1 13 247-259 79-91 (115)
146 4ayb_P DNA-directed RNA polyme 28.7 48 0.0017 20.2 2.7 31 188-231 4-34 (48)
147 2vje_B MDM4 protein; proto-onc 28.6 34 0.0012 21.7 2.3 43 189-231 9-55 (63)
148 4gne_A Histone-lysine N-methyl 28.5 72 0.0025 23.0 4.2 33 180-230 36-68 (107)
149 2kwj_A Zinc finger protein DPF 27.6 50 0.0017 23.9 3.3 79 108-216 20-107 (114)
150 2d8s_A Cellular modulator of i 27.3 41 0.0014 22.7 2.6 37 222-258 17-68 (80)
151 2ep4_A Ring finger protein 24; 27.1 65 0.0022 20.7 3.6 43 189-231 17-63 (74)
152 2kiz_A E3 ubiquitin-protein li 26.0 55 0.0019 20.7 3.0 44 188-231 15-62 (69)
153 2ecj_A Tripartite motif-contai 25.9 52 0.0018 19.9 2.8 30 188-218 16-45 (58)
154 2jne_A Hypothetical protein YF 25.0 44 0.0015 23.8 2.4 45 188-241 33-78 (101)
155 3ttc_A HYPF, transcriptional r 24.9 26 0.00091 33.8 1.7 77 110-197 16-99 (657)
156 4av1_A Poly [ADP-ribose] polym 24.9 15 0.00053 30.4 0.0 31 221-251 144-186 (223)
157 4g9i_A Hydrogenase maturation 24.4 29 0.001 34.2 1.9 78 109-197 104-188 (772)
158 3vth_A Hydrogenase maturation 24.3 31 0.0011 34.0 2.1 78 109-197 109-193 (761)
159 2c2l_A CHIP, carboxy terminus 24.2 46 0.0016 27.6 2.9 47 185-232 206-255 (281)
160 2ct0_A Non-SMC element 1 homol 24.1 34 0.0012 22.9 1.7 11 221-231 53-63 (74)
161 2ea6_A Ring finger protein 4; 22.3 39 0.0013 21.3 1.7 29 110-138 14-49 (69)
162 2e6s_A E3 ubiquitin-protein li 22.1 55 0.0019 22.0 2.4 28 222-250 28-57 (77)
163 2yho_A E3 ubiquitin-protein li 21.8 56 0.0019 21.8 2.4 40 189-231 20-60 (79)
164 2l0b_A E3 ubiquitin-protein li 21.7 63 0.0022 22.0 2.8 43 189-231 42-88 (91)
165 2d8v_A Zinc finger FYVE domain 21.6 22 0.00074 23.4 0.2 14 206-219 26-39 (67)
166 1x4j_A Ring finger protein 38; 21.4 64 0.0022 20.8 2.7 25 207-231 45-71 (75)
167 2das_A Zinc finger MYM-type pr 21.0 73 0.0025 20.5 2.6 13 251-263 23-35 (62)
168 2f42_A STIP1 homology and U-bo 20.1 69 0.0024 25.4 3.0 47 185-232 104-153 (179)
169 2ea5_A Cell growth regulator w 20.1 57 0.0019 21.1 2.1 41 188-231 16-57 (68)
No 1
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.92 E-value=7.6e-26 Score=189.78 Aligned_cols=120 Identities=26% Similarity=0.595 Sum_probs=109.2
Q ss_pred CCCcccccCcccc-CceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccCC---------------
Q psy11345 110 RVPLCGQCYQQIR-GPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAP--------------- 173 (282)
Q Consensus 110 ~~~~C~~C~~~I~-~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~--------------- 173 (282)
..+.|.+|+++|. ++.|.++|+.||++||+|. .|+.+|....|+.+++++||+.||.+++++
T Consensus 6 ~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~--~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~ 83 (192)
T 1b8t_A 6 GGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCM--VCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTD 83 (192)
T ss_dssp CCEECTTTCCEECSSCCEEETTEEECTTTCBCT--TTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCC
T ss_pred CCCcCccCCCeecceeEEEeCCceecCCCCcCc--ccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecC
Confidence 3469999999996 7888999999999999999 999999998999999999999999876543
Q ss_pred ---------------------------------------------ceeeecCccccccCccCCccCcccCCCCeeeeCCe
Q psy11345 174 ---------------------------------------------DCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGL 208 (282)
Q Consensus 174 ---------------------------------------------~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~ 208 (282)
+.+.+.++.||++||+|..|+++|.+..|+..+++
T Consensus 84 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~ 163 (192)
T 1b8t_A 84 KGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGE 163 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTE
T ss_pred CCcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCE
Confidence 23678899999999999999999988889999999
Q ss_pred ecCHhhhhcccCCCCccCCCccc
Q psy11345 209 PYCENDWNDLFTTKCFACGFPIE 231 (282)
Q Consensus 209 ~yC~~c~~~~~~~~C~~C~~~I~ 231 (282)
+||+.||.++|+++|.+|++++.
T Consensus 164 ~yC~~cy~~~f~~kc~~C~~~~g 186 (192)
T 1b8t_A 164 IYCKGCYAKNFGPKGFGFGQGAG 186 (192)
T ss_dssp EEEHHHHHHHTCCCCCCCCCCCC
T ss_pred EeCHHHHHHhcCCcCCCCCCccc
Confidence 99999999999999999999864
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.92 E-value=1.5e-25 Score=175.41 Aligned_cols=113 Identities=22% Similarity=0.435 Sum_probs=103.2
Q ss_pred cccccccccccCCceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCccCCCccccCCcEEEeC
Q psy11345 161 LYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFACGFPIEAGDRWVEAL 240 (282)
Q Consensus 161 ~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~~~ 240 (282)
+.|..|.+.+.....+.+.++.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|.+|+++|.+++.+|.++
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~ 83 (126)
T 2xqn_T 4 PRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYN 83 (126)
T ss_dssp CBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEEEET
T ss_pred CCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCceEEECC
Confidence 56888888888777889999999999999999999999878999999999999999999999999999999877899999
Q ss_pred Ccccc--cCCCcCCCCCCCCCCCCcccccCCceecCCCeeecC
Q psy11345 241 NNNYH--SLCFNCSSPSSPALSGAKPYGTQNTIKSTSGTIVCL 281 (282)
Q Consensus 241 ~~~~H--~~Cf~C~~C~~~l~~g~~~~~~~~~~~~~~g~~~C~ 281 (282)
++.|| ++||+|..|+++| .|+.|+ ..+|++||+
T Consensus 84 ~~~~H~~~~CF~C~~C~~~l-~~~~f~-------~~~~~~yC~ 118 (126)
T 2xqn_T 84 NFSWHASTECFLCSCCSKCL-IGQKFM-------PVEGMVFCS 118 (126)
T ss_dssp TEEEESSTTTSBCTTTCCBC-TTSEEE-------EETTEEESS
T ss_pred CCEeeCCCCCcCcCCCCCcc-CCCeeE-------eECCEEcch
Confidence 99999 9999999999994 576665 678999997
No 3
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.92 E-value=1.8e-25 Score=176.14 Aligned_cols=115 Identities=26% Similarity=0.531 Sum_probs=102.9
Q ss_pred ccccccccccccCCceeeecCccccccCccCCccCcccCC--CCeeeeCCeecCHhhhhcccCC--CCccCCCccccCCc
Q psy11345 160 GLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGN--NPFFLEEGLPYCENDWNDLFTT--KCFACGFPIEAGDR 235 (282)
Q Consensus 160 ~~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~f~~~~~~~yC~~c~~~~~~~--~C~~C~~~I~~~~~ 235 (282)
.+.|..|.+.|.+...+.+.++.||++||+|..|+++|.. ..|+.+++++||+.||.++|++ +|..|+++|.+.+.
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~ 81 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEM 81 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSE
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccce
Confidence 3568888888887777899999999999999999999963 5699999999999999999999 99999999997778
Q ss_pred EEEeCCcccccCCCcCCCCCCCCCCCCcccccCCceecCCCeeecC
Q psy11345 236 WVEALNNNYHSLCFNCSSPSSPALSGAKPYGTQNTIKSTSGTIVCL 281 (282)
Q Consensus 236 ~~~~~~~~~H~~Cf~C~~C~~~l~~g~~~~~~~~~~~~~~g~~~C~ 281 (282)
++.+.++.||++||+|..|+++|..|..|+ ..+|++||+
T Consensus 82 ~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~-------~~~~~~~C~ 120 (131)
T 2xjy_A 82 TMRVKDKVYHLECFKCAACQKHFCVGDRYL-------LINSDIVCE 120 (131)
T ss_dssp EEEETTEEEEGGGCBCTTTCCBCCTTCEEE-------EETTEEEEG
T ss_pred eEeeCCceECccCcccCCCCCCCCCCCEEE-------EECCEEEcH
Confidence 899999999999999999999965677666 668899996
No 4
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.90 E-value=3.7e-24 Score=177.97 Aligned_cols=117 Identities=26% Similarity=0.509 Sum_probs=104.1
Q ss_pred CCccccccccccccCCceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCccCCCccccCCcEE
Q psy11345 158 DSGLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFACGFPIEAGDRWV 237 (282)
Q Consensus 158 ~~~~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~ 237 (282)
.+.+.|..|.+.|.....+.+.++.||++||+|..|+++|.+..| .+++++||+.||.++|+++|..|+++|.+++.++
T Consensus 58 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v~ 136 (182)
T 2jtn_A 58 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVR 136 (182)
T ss_dssp CSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCCCSSCCCC
T ss_pred CCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCccCCCceEE
Confidence 456789999999988778899999999999999999999987664 7899999999999999999999999999777778
Q ss_pred EeCCcccccCCCcCCCCCCCCCCCCcccccCCceecCCCeeecC
Q psy11345 238 EALNNNYHSLCFNCSSPSSPALSGAKPYGTQNTIKSTSGTIVCL 281 (282)
Q Consensus 238 ~~~~~~~H~~Cf~C~~C~~~l~~g~~~~~~~~~~~~~~g~~~C~ 281 (282)
.+.++.||++||+|..|+++|..|..|| ...+|++||+
T Consensus 137 ~a~~~~~H~~CF~C~~C~~~L~~g~~f~------~~~~g~~yC~ 174 (182)
T 2jtn_A 137 RAQDFVYHLHCFACVVCKRQLATGDEFY------LMEDSRLVCK 174 (182)
T ss_dssp EETTEECCTTTCCCTTTCCCCCTTCEEE------ECTTSCEECH
T ss_pred ecCCCCEEeCCCcCCCCCCCCCCCCceE------EccCCEEECH
Confidence 8999999999999999999976677655 2568899996
No 5
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.90 E-value=2.6e-24 Score=176.88 Aligned_cols=116 Identities=27% Similarity=0.515 Sum_probs=101.8
Q ss_pred CccccccccccccCCceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCccCCCccccCCcEEE
Q psy11345 159 SGLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFACGFPIEAGDRWVE 238 (282)
Q Consensus 159 ~~~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~ 238 (282)
+...|..|.+.|.....+.+.++.||++||+|..|+++|.+.. |.+++++||+.||.++|+++|..|+++|.+++.++.
T Consensus 5 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~ 83 (169)
T 2rgt_A 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRR 83 (169)
T ss_dssp --CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEE
T ss_pred CCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCC-cccCCeeeecccccccccccccccccccCCCcEEEE
Confidence 3467888888888877888999999999999999999998766 578999999999999999999999999997777788
Q ss_pred eCCcccccCCCcCCCCCCCCCCCCcccccCCceecCCCeeecC
Q psy11345 239 ALNNNYHSLCFNCSSPSSPALSGAKPYGTQNTIKSTSGTIVCL 281 (282)
Q Consensus 239 ~~~~~~H~~Cf~C~~C~~~l~~g~~~~~~~~~~~~~~g~~~C~ 281 (282)
+.++.||++||+|..|++.|..|..|| ...||++||+
T Consensus 84 a~~~~~H~~CF~C~~C~~~L~~g~~f~------~~~~g~~~C~ 120 (169)
T 2rgt_A 84 AQDFVYHLHCFACVVCKRQLATGDEFY------LMEDSRLVCK 120 (169)
T ss_dssp ETTEEEEGGGCBCTTTCCBCCTTCEEE------ECTTSCEEEH
T ss_pred cCCceEeeCCCcCCCCCCCCCCCCceE------EccCCeEECH
Confidence 999999999999999999976677665 2467889985
No 6
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.90 E-value=1.6e-24 Score=181.03 Aligned_cols=115 Identities=28% Similarity=0.570 Sum_probs=103.4
Q ss_pred ccccccccccccCCceeeecCccccccCccCCccCcccCC--CCeeeeCCeecCHhhhhcccCC--CCccCCCccccCCc
Q psy11345 160 GLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGN--NPFFLEEGLPYCENDWNDLFTT--KCFACGFPIEAGDR 235 (282)
Q Consensus 160 ~~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~f~~~~~~~yC~~c~~~~~~~--~C~~C~~~I~~~~~ 235 (282)
.+.|..|.+.|.....+.+.++.||++||+|..|+++|.. ..|+.+++++||+.||.++|++ +|..|+++|.+.+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~ 84 (188)
T 1rut_X 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASEL 84 (188)
T ss_dssp CCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTSE
T ss_pred CCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCcE
Confidence 4578888888887778899999999999999999999985 5699999999999999999998 79999999997778
Q ss_pred EEEeCCcccccCCCcCCCCCCCCCCCCcccccCCceecCCCeeecC
Q psy11345 236 WVEALNNNYHSLCFNCSSPSSPALSGAKPYGTQNTIKSTSGTIVCL 281 (282)
Q Consensus 236 ~~~~~~~~~H~~Cf~C~~C~~~l~~g~~~~~~~~~~~~~~g~~~C~ 281 (282)
++.+.++.||++||+|..|++.|..|..|+ ..++++||+
T Consensus 85 ~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~-------~~~g~~yC~ 123 (188)
T 1rut_X 85 VMRAQGNVYHLKCFTCSTCRNRLVPGDRFH-------YINGSLFCE 123 (188)
T ss_dssp EEEETTEEECGGGCBCTTTCCBCCTTCEEE-------EETTEEEEG
T ss_pred EEEcCCCEEeCCCCeECCCCCCCCCCCeEE-------EECCeEECH
Confidence 899999999999999999999966677666 668899996
No 7
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.90 E-value=1.1e-24 Score=171.60 Aligned_cols=108 Identities=26% Similarity=0.508 Sum_probs=96.6
Q ss_pred CCcccccCccccCc-eeecCCcccCcCCcccccCCCCCCCCC--CCceecCCccccccccccccCC--c-----------
Q psy11345 111 VPLCGQCYQQIRGP-FITALGKIWCPDHFLCVRPQCKRPLQD--IGFVEEDSGLYCEFCFEQYLAP--D----------- 174 (282)
Q Consensus 111 ~~~C~~C~~~I~~~-~v~~~~~~~H~~Cf~C~~~~C~~~l~~--~~~~~~~~~~yC~~c~~~~~~~--~----------- 174 (282)
.++|.+|+++|.++ +|.|+|+.||++||+|. .|+.+|.. ..|+.++|++||+.||.+++++ .
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~--~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~ 79 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCD--LCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 79 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCT--TTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTT
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccC--cCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCcc
Confidence 46999999999887 68999999999999999 99999964 6799999999999999887765 2
Q ss_pred --eeeecCccccccCccCCccCcccC-CCCeeeeCCeecCHhhhhcccC
Q psy11345 175 --CLNAIGKHYHPECFTCAYCGKLFG-NNPFFLEEGLPYCENDWNDLFT 220 (282)
Q Consensus 175 --~~~~~~~~~H~~Cf~C~~C~~~l~-~~~f~~~~~~~yC~~c~~~~~~ 220 (282)
.+.+.++.||++||+|..|+++|. +..|++.++++||..||.++++
T Consensus 80 e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~ 128 (131)
T 2xjy_A 80 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTK 128 (131)
T ss_dssp SEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHH
T ss_pred ceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhh
Confidence 367899999999999999999995 5559999999999999998875
No 8
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.90 E-value=1.5e-24 Score=181.35 Aligned_cols=140 Identities=19% Similarity=0.397 Sum_probs=109.8
Q ss_pred CCCcccccCccccCc-eeecCCcccCcCCcccccCCCCCCCCC--CCceecCCccccccccccccCC--c----------
Q psy11345 110 RVPLCGQCYQQIRGP-FITALGKIWCPDHFLCVRPQCKRPLQD--IGFVEEDSGLYCEFCFEQYLAP--D---------- 174 (282)
Q Consensus 110 ~~~~C~~C~~~I~~~-~v~~~~~~~H~~Cf~C~~~~C~~~l~~--~~~~~~~~~~yC~~c~~~~~~~--~---------- 174 (282)
..++|.+|+++|.++ +|.|+++.||++||+|. .|+.+|.. ..|+.+++++||+.||.++++. .
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~--~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCS--SCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCT--TTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccC--CCCcccccCCceEEEeCCccccccccccccccCCccccCCCcccc
Confidence 346999999999987 58999999999999999 99999986 6899999999999999887765 2
Q ss_pred ---eeeecCccccccCccCCccCcccCC-CCeeeeCCeecCHhhhhcccCCCCccCCCccc----cCCcE----EEeCCc
Q psy11345 175 ---CLNAIGKHYHPECFTCAYCGKLFGN-NPFFLEEGLPYCENDWNDLFTTKCFACGFPIE----AGDRW----VEALNN 242 (282)
Q Consensus 175 ---~~~~~~~~~H~~Cf~C~~C~~~l~~-~~f~~~~~~~yC~~c~~~~~~~~C~~C~~~I~----~~~~~----~~~~~~ 242 (282)
.+.+.++.||++||+|..|+++|.. ..|+..++++||..||.+++.++|...+.... ..|.. ...++.
T Consensus 82 ~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~~~~~g~~~~~~~~~~~v~vvgep~l~g~ 161 (188)
T 1rut_X 82 SELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGGSGGSGGSGGDVMVVGEPTLMGG 161 (188)
T ss_dssp TSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC----------------CCCEECCCCEETTC
T ss_pred CcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhcccccccCCCCcccccCCcccccCCCcccCC
Confidence 3678899999999999999999964 45999999999999999999999988775211 11111 245678
Q ss_pred ccccCCCcC
Q psy11345 243 NYHSLCFNC 251 (282)
Q Consensus 243 ~~H~~Cf~C 251 (282)
.||+...+.
T Consensus 162 ~~~~~~~r~ 170 (188)
T 1rut_X 162 EFGDEDERL 170 (188)
T ss_dssp CCCCTTEEE
T ss_pred CCCCCCCce
Confidence 899888886
No 9
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.89 E-value=1.4e-23 Score=157.83 Aligned_cols=96 Identities=26% Similarity=0.425 Sum_probs=89.1
Q ss_pred ccccccccccccC-CceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCccCCCccccCCcEEE
Q psy11345 160 GLYCEFCFEQYLA-PDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFACGFPIEAGDRWVE 238 (282)
Q Consensus 160 ~~yC~~c~~~~~~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~ 238 (282)
...|..|.+.+.. ...+.+.++.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|.+|+++|.+++.+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~ 84 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQNVE 84 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSSCEEE
T ss_pred CCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCCeEEE
Confidence 4568888888864 678899999999999999999999988779999999999999999999999999999998888999
Q ss_pred eCCcccccCCCcCCCCC
Q psy11345 239 ALNNNYHSLCFNCSSPS 255 (282)
Q Consensus 239 ~~~~~~H~~Cf~C~~C~ 255 (282)
++++.||++||+|..|+
T Consensus 85 a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 85 YKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp SSSCEEETTTCCCTTCC
T ss_pred eCCcchHHhCCCCCCCC
Confidence 99999999999999996
No 10
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.89 E-value=1e-23 Score=164.99 Aligned_cols=106 Identities=25% Similarity=0.541 Sum_probs=97.0
Q ss_pred CcccccCcccc-CceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccCCc-------------eee
Q psy11345 112 PLCGQCYQQIR-GPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPD-------------CLN 177 (282)
Q Consensus 112 ~~C~~C~~~I~-~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~-------------~~~ 177 (282)
++|.+|+++|. +++|.++|+.||++||+|. .|+++|....|+.+++++||+.||.+++++. .+.
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~ 81 (126)
T 2xqn_T 4 PRCAGCDELIFSNEYTQAENQNWHLKHFCCF--DCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVT 81 (126)
T ss_dssp CBBTTTSSBCCSSCEEEETTEEECGGGSBCT--TTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEEE
T ss_pred CCCccCCCEeCCceEEeeCCCCccCCCCCcC--CCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCceEEE
Confidence 69999999997 5789999999999999999 9999999889999999999999998877663 377
Q ss_pred ecCcccc--ccCccCCccCcccCCCCeeeeCCeecCHhhhhccc
Q psy11345 178 AIGKHYH--PECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLF 219 (282)
Q Consensus 178 ~~~~~~H--~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~ 219 (282)
+.++.|| ++||+|..|+++|.+..|++.++++||..++.++|
T Consensus 82 a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 82 YNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp ETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred CCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhc
Confidence 8999999 99999999999999777999999999998887766
No 11
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.88 E-value=3.8e-23 Score=169.89 Aligned_cols=134 Identities=22% Similarity=0.470 Sum_probs=104.6
Q ss_pred CCCcccccCccccCc-eeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccCCce-------------
Q psy11345 110 RVPLCGQCYQQIRGP-FITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPDC------------- 175 (282)
Q Consensus 110 ~~~~C~~C~~~I~~~-~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~------------- 175 (282)
..++|.+|+++|.+. +|.++|+.||++||+|. .|+.+|.... |.++|++||+.||.++++..|
T Consensus 5 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~--~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v 81 (169)
T 2rgt_A 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCS--DCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVV 81 (169)
T ss_dssp --CBBSSSSSBCCSSSCEECSSCEECTTTSBCT--TTCCBCCSCC-EESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEE
T ss_pred CCCccccCCCccCCcEEEEECCcEEccccCccC--CCCCcCCCCC-cccCCeeeecccccccccccccccccccCCCcEE
Confidence 357999999999876 58899999999999999 9999998866 689999999999988777643
Q ss_pred eeecCccccccCccCCccCcccCCC-Ceee-eCCeecCHhhhhcccCCCCc--cCCCccccCCcEEEeCCcccccCCCc
Q psy11345 176 LNAIGKHYHPECFTCAYCGKLFGNN-PFFL-EEGLPYCENDWNDLFTTKCF--ACGFPIEAGDRWVEALNNNYHSLCFN 250 (282)
Q Consensus 176 ~~~~~~~~H~~Cf~C~~C~~~l~~~-~f~~-~~~~~yC~~c~~~~~~~~C~--~C~~~I~~~~~~~~~~~~~~H~~Cf~ 250 (282)
+.+.++.||++||+|..|+++|..+ .|+. .++++||..||.+++...+. ..+++.+ .+.+....+|...|.
T Consensus 82 ~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~~~~~~~~rprt----~~~~~q~~~l~~~f~ 156 (169)
T 2rgt_A 82 RRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSGGSGGSGGGT----PMVAASPERHDGGLQ 156 (169)
T ss_dssp EEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC----------E----EEECCCCEECCSSCC
T ss_pred EEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhccCCCCCCcCCCC----cccHHHHHHHHHHHh
Confidence 4688999999999999999999744 4655 58899999999998866543 3333332 455666667777665
No 12
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.87 E-value=1.5e-22 Score=169.68 Aligned_cols=115 Identities=22% Similarity=0.527 Sum_probs=100.2
Q ss_pred CCccccccccccccCCceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCC---------------
Q psy11345 158 DSGLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTK--------------- 222 (282)
Q Consensus 158 ~~~~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~--------------- 222 (282)
.+...|..|.+.+...+.+.+.++.||++||+|..|+++|....|+.+++++||+.||.++|+++
T Consensus 5 ~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~ 84 (192)
T 1b8t_A 5 GGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDK 84 (192)
T ss_dssp CCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCC
T ss_pred CCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCC
Confidence 35678999999888777788999999999999999999999888999999999999999999876
Q ss_pred ---------------------------------CccCCCccccCCcEEEeCCcccccCCCcCCCCCCCCCCCCcccccCC
Q psy11345 223 ---------------------------------CFACGFPIEAGDRWVEALNNNYHSLCFNCSSPSSPALSGAKPYGTQN 269 (282)
Q Consensus 223 ---------------------------------C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~g~~~~~~~~ 269 (282)
|.+|+++|.+++ .|.+.++.||++||+|..|+++| .+..|+
T Consensus 85 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~-~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~---- 158 (192)
T 1b8t_A 85 GESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAE-KVIGAGKSWHKSCFRCAKCGKSL-ESTTLA---- 158 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSS-CEEETTEEECTTTCBCTTTCCBC-CSSSEE----
T ss_pred CcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcE-EEecCCCccchhcCCccccCCCC-CCCccc----
Confidence 778999998654 56799999999999999999995 333344
Q ss_pred ceecCCCeeecC
Q psy11345 270 TIKSTSGTIVCL 281 (282)
Q Consensus 270 ~~~~~~g~~~C~ 281 (282)
..||++||+
T Consensus 159 ---~~~g~~yC~ 167 (192)
T 1b8t_A 159 ---DKDGEIYCK 167 (192)
T ss_dssp ---EETTEEEEH
T ss_pred ---ccCCEEeCH
Confidence 788999996
No 13
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.85 E-value=6.6e-22 Score=164.36 Aligned_cols=108 Identities=26% Similarity=0.658 Sum_probs=93.6
Q ss_pred CCCCCcccccCccccCc-eeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccCCce-----------
Q psy11345 108 GARVPLCGQCYQQIRGP-FITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPDC----------- 175 (282)
Q Consensus 108 ~~~~~~C~~C~~~I~~~-~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~----------- 175 (282)
....+.|.+|+++|.+. +|.++|+.||++||+|. .|+++|.... |.++|++||+.||.+++++.|
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~--~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~ 133 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCS--DCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQ 133 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCT--TTCCCCSSCC-EEETTEEECHHHHHHTTSCCCTTTCCCCCSSC
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccC--CCCCccCCCc-eeECCEeeecCccccccccccccCCCccCCCc
Confidence 34567999999999876 57899999999999999 9999998866 589999999999998887744
Q ss_pred --eeecCccccccCccCCccCcccCCC-Ceee-eCCeecCHhhhhcc
Q psy11345 176 --LNAIGKHYHPECFTCAYCGKLFGNN-PFFL-EEGLPYCENDWNDL 218 (282)
Q Consensus 176 --~~~~~~~~H~~Cf~C~~C~~~l~~~-~f~~-~~~~~yC~~c~~~~ 218 (282)
+.+.++.||++||+|..|+++|..+ .|+. .++++||..||.++
T Consensus 134 ~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 134 VVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp CCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred eEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 4678999999999999999999754 4664 58899999999865
No 14
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.77 E-value=2.5e-19 Score=134.52 Aligned_cols=82 Identities=24% Similarity=0.585 Sum_probs=74.5
Q ss_pred CCcccccCcccc--CceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccCCc-------------e
Q psy11345 111 VPLCGQCYQQIR--GPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPD-------------C 175 (282)
Q Consensus 111 ~~~C~~C~~~I~--~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~-------------~ 175 (282)
.+.|.+|+++|. +++|.++++.||++||+|. .|+++|....|+.+++++||+.||.+++++. .
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~ 82 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHYKNRFWHDTCFRCA--KCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQN 82 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEETTEEEETTTCCCS--SSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSSCE
T ss_pred CCcCcccCCcccCCceEEEECccChhhcCCccc--ccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCCeE
Confidence 469999999996 6889999999999999999 9999999888999999999999998887653 4
Q ss_pred eeecCccccccCccCCccC
Q psy11345 176 LNAIGKHYHPECFTCAYCG 194 (282)
Q Consensus 176 ~~~~~~~~H~~Cf~C~~C~ 194 (282)
+.+.++.||++||+|..|+
T Consensus 83 ~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 83 VEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp EESSSCEEETTTCCCTTCC
T ss_pred EEeCCcchHHhCCCCCCCC
Confidence 7788999999999999996
No 15
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=4.5e-18 Score=132.10 Aligned_cols=99 Identities=20% Similarity=0.345 Sum_probs=83.1
Q ss_pred ccccccccccccCCceeeecCccccccCccCCccCcccCC--CCeeeeCCeecCHhhhhcccCC--CCccCCCccccCCc
Q psy11345 160 GLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGN--NPFFLEEGLPYCENDWNDLFTT--KCFACGFPIEAGDR 235 (282)
Q Consensus 160 ~~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~f~~~~~~~yC~~c~~~~~~~--~C~~C~~~I~~~~~ 235 (282)
.+.|..|.+.+.....+.+.++.||++||+|..|+++|.. ..|+.+++++||+.||.++|++ +|.+|+++|.+ .
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~--~ 82 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG--G 82 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC--E
T ss_pred CCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc--h
Confidence 4678888888888777889999999999999999999973 5699999999999999999999 99999999984 3
Q ss_pred EEEeCCcccccCCCcCCCCCCCCCCCCcccccCCceecCCCeeecC
Q psy11345 236 WVEALNNNYHSLCFNCSSPSSPALSGAKPYGTQNTIKSTSGTIVCL 281 (282)
Q Consensus 236 ~~~~~~~~~H~~Cf~C~~C~~~l~~g~~~~~~~~~~~~~~g~~~C~ 281 (282)
.+.+.+ +.++.|+.|+ ..++++||+
T Consensus 83 ~~~~~g--------------~~~l~g~~f~-------~~~~~~yC~ 107 (122)
T 1m3v_A 83 DVMVVG--------------EPTLMGGEFG-------DEDERLITR 107 (122)
T ss_dssp ESSSSS--------------SSSCCSCTTC-------CTTCCCCEE
T ss_pred heEEcC--------------CcCCCCCccE-------ecCCEeEcc
Confidence 444444 3457777776 788889986
No 16
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=2.7e-17 Score=126.15 Aligned_cols=100 Identities=17% Similarity=0.240 Sum_probs=82.7
Q ss_pred CCcccccCccccCc-eeecCCcccCcCCcccccCCCCCCCCC--CCceecCCccccccccccccCCceeeec-Ccccccc
Q psy11345 111 VPLCGQCYQQIRGP-FITALGKIWCPDHFLCVRPQCKRPLQD--IGFVEEDSGLYCEFCFEQYLAPDCLNAI-GKHYHPE 186 (282)
Q Consensus 111 ~~~C~~C~~~I~~~-~v~~~~~~~H~~Cf~C~~~~C~~~l~~--~~~~~~~~~~yC~~c~~~~~~~~~~~~~-~~~~H~~ 186 (282)
.++|.+|+++|.+. +|.++++.||++||+|. .|+.+|.. ..|+.+++++||+.||.+++++.|.-.. +..
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~--~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~~~~---- 76 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCD--LCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSGGDV---- 76 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCS--SSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBSCSC----
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCccc--ccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCCCce----
Confidence 46999999999887 79999999999999999 99999985 5799999999999999999998754222 222
Q ss_pred CccCCccCcc-cCCCCeeeeCCeecCHhhhhcccC
Q psy11345 187 CFTCAYCGKL-FGNNPFFLEEGLPYCENDWNDLFT 220 (282)
Q Consensus 187 Cf~C~~C~~~-l~~~~f~~~~~~~yC~~c~~~~~~ 220 (282)
..|+.+ |.+..|++.++++||..|+.++..
T Consensus 77 ----~~~~~~~~~g~~f~~~~~~~~C~~~~~~~~~ 107 (114)
T 1j2o_A 77 ----MVVGEPTLMGGEFGDEDERLITRLENTQFDA 107 (114)
T ss_dssp ----CCSSCSSTTSSBCCCSSSCCCEEEECTTCCC
T ss_pred ----eEcCCccCCCCeeEEcCCEeecchhhhcccc
Confidence 235556 455569999999999999987654
No 17
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1.3e-16 Score=122.26 Aligned_cols=96 Identities=21% Similarity=0.364 Sum_probs=79.8
Q ss_pred CccccccccccccCCceeeecCccccccCccCCccCcccCC--CCeeeeCCeecCHhhhhcccCCCCccCCCccccCCcE
Q psy11345 159 SGLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGN--NPFFLEEGLPYCENDWNDLFTTKCFACGFPIEAGDRW 236 (282)
Q Consensus 159 ~~~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~f~~~~~~~yC~~c~~~~~~~~C~~C~~~I~~~~~~ 236 (282)
+.+.|..|.+.|.....+.+.++.||++||+|+.|+++|.. ..|+.+++++||+.||.++|+++|..|.. +.+
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~-----~~~ 76 (114)
T 1j2o_A 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSG-----GDV 76 (114)
T ss_dssp CCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBS-----CSC
T ss_pred cCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCC-----Cce
Confidence 34678888888887778999999999999999999999975 46999999999999999999999998862 112
Q ss_pred EEeCCcccccCCCcCCCCCCCCCCCCcccccCCceecCCCeeecC
Q psy11345 237 VEALNNNYHSLCFNCSSPSSPALSGAKPYGTQNTIKSTSGTIVCL 281 (282)
Q Consensus 237 ~~~~~~~~H~~Cf~C~~C~~~l~~g~~~~~~~~~~~~~~g~~~C~ 281 (282)
+ .|.++++.|+.|+ ..++++||+
T Consensus 77 ~---------------~~~~~~~~g~~f~-------~~~~~~~C~ 99 (114)
T 1j2o_A 77 M---------------VVGEPTLMGGEFG-------DEDERLITR 99 (114)
T ss_dssp C---------------CSSCSSTTSSBCC-------CSSSCCCEE
T ss_pred e---------------EcCCccCCCCeeE-------EcCCEeecc
Confidence 2 1557777887776 788889886
No 18
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=6.4e-17 Score=125.55 Aligned_cols=102 Identities=14% Similarity=0.221 Sum_probs=79.7
Q ss_pred CCCcccccCccccCc-eeecCCcccCcCCcccccCCCCCCCCC--CCceecCCccccccccccccCC--ceee----ecC
Q psy11345 110 RVPLCGQCYQQIRGP-FITALGKIWCPDHFLCVRPQCKRPLQD--IGFVEEDSGLYCEFCFEQYLAP--DCLN----AIG 180 (282)
Q Consensus 110 ~~~~C~~C~~~I~~~-~v~~~~~~~H~~Cf~C~~~~C~~~l~~--~~~~~~~~~~yC~~c~~~~~~~--~~~~----~~~ 180 (282)
..+.|.+|+++|.+. +|.++++.||++||+|. .|+.+|.+ ..|+.+++++||+.||.+++++ .|.. +.+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~--~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCS--SCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEEETTEEECHHHHCCS--SSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCCCCcccCCEeCCcEEEEECCceeHhhCCCcC--CCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 346999999999876 58999999999999999 99999973 6799999999999999998877 4411 111
Q ss_pred ccccccCccCCccC-cccCCCCeeeeCCeecCHhhhhcccC
Q psy11345 181 KHYHPECFTCAYCG-KLFGNNPFFLEEGLPYCENDWNDLFT 220 (282)
Q Consensus 181 ~~~H~~Cf~C~~C~-~~l~~~~f~~~~~~~yC~~c~~~~~~ 220 (282)
..+ ...+ ..|.+..|+++++++||..||.+++.
T Consensus 82 ~~~-------~~~g~~~l~g~~f~~~~~~~yC~~~~~~~~~ 115 (122)
T 1m3v_A 82 GDV-------MVVGEPTLMGGEFGDEDERLITRLENTQFDA 115 (122)
T ss_dssp EES-------SSSSSSSCCSCTTCCTTCCCCEECTTTTTTC
T ss_pred hhe-------EEcCCcCCCCCccEecCCEeEccCcchhchh
Confidence 111 0112 24566679999999999999988763
No 19
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4.7e-16 Score=112.04 Aligned_cols=69 Identities=14% Similarity=0.312 Sum_probs=60.5
Q ss_pred CCeecCHhhhhcccCCCCccCCCccccCCcEEEeCCcccccCCCcCCCCCCCCCCCCcccccCCceecCCCeeecCC
Q psy11345 206 EGLPYCENDWNDLFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSSPSSPALSGAKPYGTQNTIKSTSGTIVCLE 282 (282)
Q Consensus 206 ~~~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~g~~~~~~~~~~~~~~g~~~C~~ 282 (282)
+|++||+.||.++|+++|.+|+++|.+++.++.++++.||++||+|..|+++| .+..|+ ..++++||+.
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~-------~~~~~~~C~~ 69 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSL-ADEPFT-------CQDSELLCND 69 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBC-SSCCEE-------EETTEEEETT
T ss_pred CCceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCcc-CCCccE-------eeCCEEECHH
Confidence 57899999999999999999999999767888999999999999999999994 455444 7788999863
No 20
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-15 Score=108.83 Aligned_cols=68 Identities=21% Similarity=0.436 Sum_probs=59.7
Q ss_pred CCeecCHhhhhcccCCCCccCCCcccc---CCcEEEeCCcccccCCCcCCCCCCCCCCCCcccccCCceecCCCeeecC
Q psy11345 206 EGLPYCENDWNDLFTTKCFACGFPIEA---GDRWVEALNNNYHSLCFNCSSPSSPALSGAKPYGTQNTIKSTSGTIVCL 281 (282)
Q Consensus 206 ~~~~yC~~c~~~~~~~~C~~C~~~I~~---~~~~~~~~~~~~H~~Cf~C~~C~~~l~~g~~~~~~~~~~~~~~g~~~C~ 281 (282)
.+++||+.||.++|+++|.+|+++|.+ .+.++.+.++.||++||+|..|+++ |.+..|+ ..+|++||+
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~-L~~~~f~-------~~~~~~yC~ 71 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVN-LANKRFV-------FHQEQVYCP 71 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCB-CTTSCCC-------EETTEECCH
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCC-CCCCccE-------eECCEEECh
Confidence 367999999999999999999999995 4588999999999999999999999 4455555 788899985
No 21
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=3e-15 Score=107.26 Aligned_cols=62 Identities=31% Similarity=0.668 Sum_probs=52.4
Q ss_pred cccccccccCCceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCcc
Q psy11345 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFA 225 (282)
Q Consensus 163 C~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~~ 225 (282)
|..|.+.+.+ ..+.+.++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|.+
T Consensus 18 C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 18 CGGCNRPVLE-NYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CTTTCCBCCS-SCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred cccCCCeecc-eeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 4444444443 4478999999999999999999998888999999999999999999999974
No 22
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.5e-15 Score=108.21 Aligned_cols=67 Identities=21% Similarity=0.486 Sum_probs=55.6
Q ss_pred CccccccccccccCC-------------ceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCcc
Q psy11345 159 SGLYCEFCFEQYLAP-------------DCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFA 225 (282)
Q Consensus 159 ~~~yC~~c~~~~~~~-------------~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~~ 225 (282)
|++||+.||.++++. ..+.+.++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 2 SSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred CceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 455555555554443 4467789999999999999999999888999999999999999999999964
No 23
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=1.7e-15 Score=109.05 Aligned_cols=67 Identities=22% Similarity=0.286 Sum_probs=59.6
Q ss_pred CeecCHhhhhcccCCCCccCCCccccCCcEEEeCCcccccCCCcCCCCCCCCCCCCcccccCCceecCCCeeecC
Q psy11345 207 GLPYCENDWNDLFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSSPSSPALSGAKPYGTQNTIKSTSGTIVCL 281 (282)
Q Consensus 207 ~~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~g~~~~~~~~~~~~~~g~~~C~ 281 (282)
+.+||+.||.++++++|.+|+++|.++++++.+.++.||++||+|..|+++|. +..|+ ..++++||+
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~-------~~~~~~yC~ 68 (82)
T 1x63_A 2 SSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIG-TGSFF-------PKGEDFYCV 68 (82)
T ss_dssp CSCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCT-TSCEE-------EETTEEEEH
T ss_pred CCcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccC-CCccE-------eeCCEEECH
Confidence 57999999999999999999999998888999999999999999999999943 33444 678899985
No 24
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=4.7e-15 Score=108.76 Aligned_cols=67 Identities=51% Similarity=1.171 Sum_probs=61.4
Q ss_pred CCCCCCcccccCccccCceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccCCce
Q psy11345 107 PGARVPLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPDC 175 (282)
Q Consensus 107 ~~~~~~~C~~C~~~I~~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~ 175 (282)
.....++|.+|++.|.+++|.++++.||++||+|. .|+++|....|+.+++++||+.||.++++++|
T Consensus 21 ~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~--~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c 87 (90)
T 2dar_A 21 AGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCA--HCKNTMAYIGFVEEKGALYCELCYEKFFASGP 87 (90)
T ss_dssp TTTCCCBBSSSCCBCCSCEEEETTEEECTTTCBCS--SSCCBCSSSCBEESSSCEECHHHHHHHTSCCC
T ss_pred CCCCCCCCccCCCEecceEEEECCccccccCCccC--CCCCCCCCCEeEeECCEEECHHHHHHHcCCCC
Confidence 33455799999999999999999999999999999 99999999899999999999999999988765
No 25
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=3.8e-15 Score=106.73 Aligned_cols=67 Identities=24% Similarity=0.505 Sum_probs=55.3
Q ss_pred CccccccccccccCC-----------ceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCcc
Q psy11345 159 SGLYCEFCFEQYLAP-----------DCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFA 225 (282)
Q Consensus 159 ~~~yC~~c~~~~~~~-----------~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~~ 225 (282)
|++||+.||.+++.. ..+.+.++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus 2 g~~yC~~cy~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 2 SSGSSGPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp CCCSCCCCCCCCSSCCCTTTCCCCCSCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred CcEEcHHHHccccCCcCCCCCCEecCcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 445555555544443 3478899999999999999999998878999999999999999999999963
No 26
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=8.5e-15 Score=103.88 Aligned_cols=70 Identities=27% Similarity=0.609 Sum_probs=62.7
Q ss_pred ccccccccccCCceeeecCccccccCccCCccCcccCCCCeeeeCCeecCH-hhhhcccCCCCccCCCccc
Q psy11345 162 YCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCE-NDWNDLFTTKCFACGFPIE 231 (282)
Q Consensus 162 yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~-~c~~~~~~~~C~~C~~~I~ 231 (282)
.|..|.+.+...+.+.+.++.||++||+|..|+++|.+..|+..++++||. .||.++|+++|.+|++.+.
T Consensus 2 ~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp BCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred cCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 477777777766678899999999999999999999988899999999999 6999999999999997764
No 27
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=1.4e-14 Score=105.97 Aligned_cols=65 Identities=29% Similarity=0.612 Sum_probs=59.8
Q ss_pred CCCCCcccccCccccCceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccCCc
Q psy11345 108 GARVPLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPD 174 (282)
Q Consensus 108 ~~~~~~C~~C~~~I~~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~ 174 (282)
....+.|.+|++.|.+++|.++++.||++||+|. .|+++|....|+.+++.+||+.||.++++++
T Consensus 22 ~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~ 86 (89)
T 1x64_A 22 AQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCA--DCNLNLKQKGYFFVEGELYCETHARARTSGP 86 (89)
T ss_dssp CCSCCBCTTTCCBCCSCCEESSSCEECTTTCCCS--SSCCCTTTSCCEEETTEEECHHHHHHHSSSC
T ss_pred CCcCCCcccCCCEecccEEEECCceECccCCEec--CCCCCCCCCCeEeECCEEECHHHHHHHhCCC
Confidence 3455799999999999999999999999999999 9999999989999999999999999888764
No 28
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=3.7e-15 Score=106.77 Aligned_cols=66 Identities=17% Similarity=0.364 Sum_probs=58.1
Q ss_pred CCeecCHhhhhcccCCCCccCCCccccCCcEEEeCCcccccCCCcCCCCCCCCCCCCcccccCCceecCCCeeecC
Q psy11345 206 EGLPYCENDWNDLFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSSPSSPALSGAKPYGTQNTIKSTSGTIVCL 281 (282)
Q Consensus 206 ~~~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~g~~~~~~~~~~~~~~g~~~C~ 281 (282)
+|++||+.||.++++++|.+|+++|.+ .+|.+.++.||++||+|..|+++| .+..|+ ..++++||+
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~-------~~~~~~yC~ 66 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQ--GGVTYRDQPWHRECLVCTGCQTPL-AGQQFT-------SRDEDPYCV 66 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCS--CCEESSSSEECTTTCBCSSSCCBC-TTCCEE-------ECSSSEEEH
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecC--cEEEECCchhhhhhCCcccCCCcC-CCCeeE-------eECCEEECH
Confidence 478999999999999999999999983 478999999999999999999994 555555 788899985
No 29
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=5.8e-15 Score=105.74 Aligned_cols=66 Identities=21% Similarity=0.491 Sum_probs=57.6
Q ss_pred CCeecCHhhhhcccCCCCccCCCccccCCcEEEeCCcccccCCCcCCCCCCCCCCCCcccccCCceecCCCeeecC
Q psy11345 206 EGLPYCENDWNDLFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSSPSSPALSGAKPYGTQNTIKSTSGTIVCL 281 (282)
Q Consensus 206 ~~~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~g~~~~~~~~~~~~~~g~~~C~ 281 (282)
++++||+.||.++++++|.+|+++|. +++|.+.++.||++||+|..|+++| .+..|+ ..++++||+
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~--~~~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~-------~~~~~~yC~ 66 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVL--ENYLSAMDTVWHPECFVCGDCFTSF-STGSFF-------ELDGRPFCE 66 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCC--SSCEEETTEEECTTTCBCSSSCCBS-CSSCCE-------ESSSCEECH
T ss_pred CCCccchhHHhhhcCCccccCCCeec--ceeEEECCCeEecCcCChhhCCCCC-CCCcEE-------eECCEEECH
Confidence 46899999999999999999999998 4688999999999999999999994 443444 678899985
No 30
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=3.9e-15 Score=106.49 Aligned_cols=65 Identities=22% Similarity=0.568 Sum_probs=59.5
Q ss_pred CCCCCcccccCccccCceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccCCc
Q psy11345 108 GARVPLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPD 174 (282)
Q Consensus 108 ~~~~~~C~~C~~~I~~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~ 174 (282)
.+..+.|.+|++.|.+++|.++++.||++||+|. .|+++|....|+.+++++||+.||.+++.+.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~ 76 (79)
T 1x62_A 12 AQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCT--DCGTNLKQKGHFFVEDQIYCEKHARERVSGP 76 (79)
T ss_dssp CCCCCCCSSSCCCCCSSCEECSSCEECTTTTSCS--SSCCCHHHHCCEESSSCEECHHHHHHHHSSC
T ss_pred CCCCCccccCCCCccCcEEEECcceeCcCcCeeC--CCCCCCCCCCeEeECCEEECHHHHHHHhCCC
Confidence 3456799999999999999999999999999999 9999998888999999999999999887653
No 31
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.50 E-value=9.1e-15 Score=105.01 Aligned_cols=73 Identities=19% Similarity=0.478 Sum_probs=56.2
Q ss_pred CCccccccccccccCCceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCccCCCcc
Q psy11345 158 DSGLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFACGFPI 230 (282)
Q Consensus 158 ~~~~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~~C~~~I 230 (282)
.+...|..|.+.+.....+.+.++.||++||+|..|+++|....|+..++++||+.||.++|+++|.+|++..
T Consensus 5 ~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp ---CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 3456788888888877788999999999999999999999988899999999999999999999999999765
No 32
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=5.1e-15 Score=106.30 Aligned_cols=67 Identities=21% Similarity=0.323 Sum_probs=58.2
Q ss_pred CeecCHhhhhcccCCCCccCCCccccCCcEEEeCCcccccCCCcCCCCCCCCCCCCcccccCCceecCCCeeecC
Q psy11345 207 GLPYCENDWNDLFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSSPSSPALSGAKPYGTQNTIKSTSGTIVCL 281 (282)
Q Consensus 207 ~~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~g~~~~~~~~~~~~~~g~~~C~ 281 (282)
+.+||+.||.++|+++|.+|+++|. +.++.++++.||++||+|..|+++|..|..|++ ..++++||+
T Consensus 2 ~~~yC~~~y~~~~~~~C~~C~~~I~--~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~------~~~~~~~C~ 68 (81)
T 1x6a_A 2 SSGSSGKDYWGKFGEFCHGCSLLMT--GPFMVAGEFKYHPECFACMSCKVIIEDGDAYAL------VQHATLYCG 68 (81)
T ss_dssp CCCCCCCCSSCCSSCBCTTTCCBCC--SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEE------CSSSCEEEH
T ss_pred CCccchhHHhhhcCCcCccCCCCcC--ceEEEECCceeccccCCccCCCCccCCCCcEEE------eeCCEEECH
Confidence 5689999999999999999999999 678899999999999999999999656665441 468889885
No 33
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.5e-14 Score=103.85 Aligned_cols=65 Identities=31% Similarity=0.621 Sum_probs=54.4
Q ss_pred ccccccccccccCCceeeecCccccccCccCCccCcccCCCCeeee-CCeecCHhhhhcccCCCCcc
Q psy11345 160 GLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLE-EGLPYCENDWNDLFTTKCFA 225 (282)
Q Consensus 160 ~~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~-~~~~yC~~c~~~~~~~~C~~ 225 (282)
...|..|.+.|.+ ..+.+.++.||++||+|..|+++|.+..|+.. ++++||+.||.++|+++|.+
T Consensus 15 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 15 LEKCATCSQPILD-RILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp CCBCTTTCCBCCS-CCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred CCccccCCCeecc-eeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 3455666666653 46889999999999999999999997778776 78999999999999999974
No 34
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=2.4e-14 Score=102.96 Aligned_cols=64 Identities=27% Similarity=0.584 Sum_probs=53.4
Q ss_pred cccccccccccCC-ceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCc
Q psy11345 161 LYCEFCFEQYLAP-DCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCF 224 (282)
Q Consensus 161 ~yC~~c~~~~~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~ 224 (282)
..|..|.+.+... ..+.+.++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred CcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 3455555555432 357889999999999999999999988899999999999999999998875
No 35
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=1.9e-14 Score=101.30 Aligned_cols=62 Identities=23% Similarity=0.413 Sum_probs=57.2
Q ss_pred CCcccccCccccCceeecCCcccCcCCcccccCCCCCCCC-CCCceecCCccccccccccccCCc
Q psy11345 111 VPLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQ-DIGFVEEDSGLYCEFCFEQYLAPD 174 (282)
Q Consensus 111 ~~~C~~C~~~I~~~~v~~~~~~~H~~Cf~C~~~~C~~~l~-~~~~~~~~~~~yC~~c~~~~~~~~ 174 (282)
.+.|.+|+++|.+++|.++++.||++||+|. .|+++|. ...|+.+++++||..|+..++...
T Consensus 5 ~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~--~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 5 SSGCDSCEKYITGRVLEAGEKHYHPSCALCV--RCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp CCSCSSSCCCCSSCCBCCSSCCBCTTTSCCS--SSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred cCCcccCCCEecCeeEEeCCCCCCCCcCEeC--CCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 4699999999999999999999999999999 9999998 678889999999999999887654
No 36
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=3.1e-14 Score=99.81 Aligned_cols=62 Identities=27% Similarity=0.618 Sum_probs=57.4
Q ss_pred CCcccccCccccC----ceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccCCc
Q psy11345 111 VPLCGQCYQQIRG----PFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPD 174 (282)
Q Consensus 111 ~~~C~~C~~~I~~----~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~ 174 (282)
.+.|.+|+++|.+ ++|.++++.||++||+|. .|+++|....|+.+++++||+.||.+++++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~--~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~ 70 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCK--KCSLSLVGRGFLTERDDILCPDCGKDISGPS 70 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCS--SSCCBCTTSCCEECSSSEECHHHHHTCCCSS
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccCEec--cCCCcCCCCccEeECCEEEChhHcCcccCCC
Confidence 4699999999986 789999999999999999 9999999989999999999999999988764
No 37
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=2.5e-14 Score=99.68 Aligned_cols=63 Identities=27% Similarity=0.527 Sum_probs=58.9
Q ss_pred CCcccccCccccCceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccCCce
Q psy11345 111 VPLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPDC 175 (282)
Q Consensus 111 ~~~C~~C~~~I~~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~ 175 (282)
.+.|.+|+++|.++.|.++++.||++||+|. .|+++|....|+.+++++||+.||.++++++|
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c 67 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGVTYREQPWHKECFVCT--ACRKQLSGQRFTARDDFAYCLNCFCDLYASGP 67 (70)
T ss_dssp CCBCSSSCCBCCSSEEESSSSEEETTTSBCS--SSCCBCTTSCCEESSSSEECHHHHHHHTCCCC
T ss_pred CCCCcccCCeeccceEEECccccCCCCCccC--CCCCcCCcCceEeeCCeEECHHHHHHHhcccc
Confidence 4699999999999899999999999999999 99999998899999999999999999887765
No 38
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=1.9e-14 Score=100.08 Aligned_cols=63 Identities=25% Similarity=0.607 Sum_probs=58.8
Q ss_pred CCcccccCccccCceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccCCce
Q psy11345 111 VPLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPDC 175 (282)
Q Consensus 111 ~~~C~~C~~~I~~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~ 175 (282)
.+.|.+|+++|.+++|.++++.||++||+|. .|+++|....|+.+++++||+.||.+++++.|
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C 67 (69)
T 2cur_A 5 SSGCVKCNKAITSGGITYQDQPWHADCFVCV--TCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPS 67 (69)
T ss_dssp CCCCSSSCCCCCTTCEEETTEEECTTTTBCT--TTCCBCTTSCEEECSSCEEEHHHHHHHHTCSC
T ss_pred cCCCcccCCEeCcceEEECccccccCcCEEC--CCCCCCCCCccEeECCEEECHHHhHHHhcCCC
Confidence 4699999999999999999999999999999 99999998899999999999999999887765
No 39
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.47 E-value=1.7e-14 Score=99.38 Aligned_cols=61 Identities=34% Similarity=0.872 Sum_probs=57.4
Q ss_pred CCcccccCccccCceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccCC
Q psy11345 111 VPLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAP 173 (282)
Q Consensus 111 ~~~C~~C~~~I~~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~ 173 (282)
.+.|.+|+++|.+++|.++|+.||++||+|. .|+++|....|+.+++++||+.||.+++++
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~ 65 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEHFVCA--KCEKPFLGHRHYERKGLAYCETHYNQLFGD 65 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTTCBCT--TTCCBCSSSCCEEETTEEECHHHHHHHCSC
T ss_pred CCCCcccCCEecceEEEECccccccCcCEEC--CCCCCCCCCceEeECCcEECHHHHHHHhCC
Confidence 4699999999999999999999999999999 999999998999999999999999988764
No 40
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=2e-14 Score=103.18 Aligned_cols=66 Identities=26% Similarity=0.433 Sum_probs=56.2
Q ss_pred CCeecCHhhhhcccCCCCccCCCccccCCcEEEeCCcccccCCCcCCCCCCCCCCCCcccccCCceecCCCeeecC
Q psy11345 206 EGLPYCENDWNDLFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSSPSSPALSGAKPYGTQNTIKSTSGTIVCL 281 (282)
Q Consensus 206 ~~~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~g~~~~~~~~~~~~~~g~~~C~ 281 (282)
++++||+.||. ++.++|.+|+++|. ++++.+.++.||++||+|..|+++| .+..|+. ..+|++||+
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~--~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~------~~~g~~yC~ 67 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPIL--DRILRAMGKAYHPGCFTCVVCHRGL-DGIPFTV------DATSQIHCI 67 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCC--SCCEEETTEEECTTTCBCSSSCCBC-TTSCEEC------CTTCCCEEH
T ss_pred cCCEECHHHhh-cCCCccccCCCeec--ceeEEECCccccHHhcCcccCCCcc-CCCeeEE------CCCCEEECH
Confidence 67899999999 78999999999998 5689999999999999999999994 4554441 237889985
No 41
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=2e-14 Score=100.20 Aligned_cols=61 Identities=34% Similarity=0.681 Sum_probs=57.2
Q ss_pred CCcccccCccccCceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccCC
Q psy11345 111 VPLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAP 173 (282)
Q Consensus 111 ~~~C~~C~~~I~~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~ 173 (282)
.+.|.+|++.|.+++|.++++.||++||+|. .|+++|....|+.+++++||+.||.+++++
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~ 65 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPECFRCD--LCQEVLADIGFVKNAGRHLCRPCHNREKAS 65 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTTSBCS--SSCCBCSSSCCEEETTEEECHHHHHHHHCC
T ss_pred CCcCccCCCEecceEEEECcccccccCCEeC--CCCCcCCCCccEeECCeEECHHHhhhhcCC
Confidence 4699999999999999999999999999999 999999998899999999999999988765
No 42
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=5.8e-14 Score=100.62 Aligned_cols=68 Identities=26% Similarity=0.615 Sum_probs=61.1
Q ss_pred cCCccccccccccccCCceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCcc
Q psy11345 157 EDSGLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFA 225 (282)
Q Consensus 157 ~~~~~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~~ 225 (282)
..+...|..|.+.|...+.+.+.++.||++||+|..|+++|.+ .|+.+++++||+.||.++|+++|..
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 12 IRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp CSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 3456789999998887778899999999999999999999985 6999999999999999999999974
No 43
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=5.9e-14 Score=99.51 Aligned_cols=67 Identities=16% Similarity=0.336 Sum_probs=59.0
Q ss_pred cccccccccccC---CceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCccCC
Q psy11345 161 LYCEFCFEQYLA---PDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFACG 227 (282)
Q Consensus 161 ~yC~~c~~~~~~---~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~~C~ 227 (282)
..|..|.+.|.. ...+.+.++.||++||+|..|+++|.+..|+..++++||..||.++|+++|..+.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 456667677663 4678899999999999999999999987899999999999999999999999875
No 44
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=3.3e-14 Score=100.82 Aligned_cols=63 Identities=24% Similarity=0.519 Sum_probs=58.8
Q ss_pred CcccccCccccC----ceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccCCcee
Q psy11345 112 PLCGQCYQQIRG----PFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPDCL 176 (282)
Q Consensus 112 ~~C~~C~~~I~~----~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~~ 176 (282)
+.|.+|+++|.+ ++|.++++.||++||+|. .|+++|....|+.+++++||+.||.+++++.|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~--~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~ 72 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCG--KCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISG 72 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCT--TTCCBCSSSCEEEETTEEEETTTTCCCCCCSSS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccCChh--hCCCcCCCCceEeECCEEECHHHhhhhhCCcCC
Confidence 589999999987 889999999999999999 999999998999999999999999998887654
No 45
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=5.9e-14 Score=100.58 Aligned_cols=63 Identities=25% Similarity=0.551 Sum_probs=57.3
Q ss_pred CCCcccccCcccc-CceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccCCce
Q psy11345 110 RVPLCGQCYQQIR-GPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPDC 175 (282)
Q Consensus 110 ~~~~C~~C~~~I~-~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~ 175 (282)
..+.|.+|+++|. +++|.++++.||++||+|. .|+++|.. .|+.+++++||+.||.++++..|
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~--~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C 77 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQ--TCSVILTG-EYISKDGVPYCESDYHAQFGSGP 77 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETTEEECTTTCBCS--SSCCBCSS-CCEEETTEEECTTHHHHHTTCCS
T ss_pred CCCCCcCcCCeeCCCeEEEECCcccccccCCcC--cCCCCcCC-CeEEECCEEECHHHHHHHcCCCC
Confidence 3469999999997 7889999999999999999 99999985 69999999999999999988754
No 46
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=5.4e-14 Score=100.94 Aligned_cols=54 Identities=33% Similarity=0.605 Sum_probs=49.2
Q ss_pred CeecCHhhhhcccCCCCccCCCccccCCcEEEeCCcccccCCCcCCCCCCCCCCCC
Q psy11345 207 GLPYCENDWNDLFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSSPSSPALSGA 262 (282)
Q Consensus 207 ~~~yC~~c~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~g~ 262 (282)
+.+||+.||.++|+++|.+|+++|. +++|.+.++.||++||+|..|+++|..|.
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~--~~~v~a~~~~wH~~CF~C~~C~~~L~~~~ 55 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIE--GEVVSALGKTYHPDCFVCAVCRLPFPPGD 55 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCC--SCCEEETTEEECTTTSSCSSSCCCCCSSS
T ss_pred CCCcchHHHHhHhCCcCccccCEec--cceEEECCceeCccCCccccCCCCCCCCC
Confidence 4589999999999999999999998 56899999999999999999999965555
No 47
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=1.5e-13 Score=97.30 Aligned_cols=67 Identities=21% Similarity=0.489 Sum_probs=60.6
Q ss_pred CccccccccccccCCceeeecCccccccCccCCccCcccCCCCeeeeCCeecCH-hhhhcccCCCCcc
Q psy11345 159 SGLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCE-NDWNDLFTTKCFA 225 (282)
Q Consensus 159 ~~~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~-~c~~~~~~~~C~~ 225 (282)
....|..|.+.+...+.+.+.++.||++||+|..|+++|.+..|+..++++||. .||.++|+++|.+
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred CCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 346788888888877788899999999999999999999988899999999999 7999999999974
No 48
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=1.1e-13 Score=96.13 Aligned_cols=65 Identities=18% Similarity=0.451 Sum_probs=57.4
Q ss_pred ccccccccccccCCceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCcc
Q psy11345 160 GLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFA 225 (282)
Q Consensus 160 ~~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~~ 225 (282)
...|..|.+.+.+ ..+.+.++.||++||+|..|+++|.+..|++.++++||+.||.++|+++|.+
T Consensus 5 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCSSSCCCCCT-TCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred cCCCcccCCEeCc-ceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 4567777777765 4688899999999999999999999878999999999999999999999974
No 49
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=1e-13 Score=99.40 Aligned_cols=62 Identities=23% Similarity=0.515 Sum_probs=49.1
Q ss_pred cccccccccCCceeeecCccccccCccCCccCcccCC-CCee-eeCCeecCHhhhhcccCCCCcc
Q psy11345 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGN-NPFF-LEEGLPYCENDWNDLFTTKCFA 225 (282)
Q Consensus 163 C~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~f~-~~~~~~yC~~c~~~~~~~~C~~ 225 (282)
|..|.+.+. ...+.+.++.||++||+|..|+++|.. ..|+ ..++++||+.||.++|++.|.+
T Consensus 18 C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~sg 81 (81)
T 1x6a_A 18 CHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSSG 81 (81)
T ss_dssp CTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSCC
T ss_pred CccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCCC
Confidence 444444443 244788999999999999999999975 4577 4899999999999999988753
No 50
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.42 E-value=1.5e-13 Score=95.79 Aligned_cols=65 Identities=23% Similarity=0.507 Sum_probs=57.1
Q ss_pred ccccccccccccCCceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCcc
Q psy11345 160 GLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFA 225 (282)
Q Consensus 160 ~~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~~ 225 (282)
...|..|.+.+.+ ..+.+.++.||++||+|..|+++|.+..|+..++++||..||.++|+++|..
T Consensus 5 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCBCSSSCCBCCS-SEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCcccCCeecc-ceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 3457777777765 4588899999999999999999998888999999999999999999999964
No 51
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.42 E-value=1e-13 Score=98.19 Aligned_cols=63 Identities=22% Similarity=0.563 Sum_probs=58.5
Q ss_pred CCcccccCcccc-CceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccc-cccccccCCce
Q psy11345 111 VPLCGQCYQQIR-GPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCE-FCFEQYLAPDC 175 (282)
Q Consensus 111 ~~~C~~C~~~I~-~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~-~c~~~~~~~~~ 175 (282)
.+.|.+|+++|. +++|.++++.||++||+|. .|+++|....|+.+++++||+ .||.++++++|
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~--~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc 73 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCE--RCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGP 73 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTTCBCS--SSCCBCCTTSCEEETTEEECTTTHHHHHSCSSC
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCCCCCC--CCCCccCCCceEeECCEEecchHHHHHhccccc
Confidence 469999999998 7899999999999999999 999999998999999999999 79999888765
No 52
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.42 E-value=2.2e-13 Score=95.40 Aligned_cols=66 Identities=24% Similarity=0.543 Sum_probs=58.5
Q ss_pred ccccccccccccCC-ceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCcc
Q psy11345 160 GLYCEFCFEQYLAP-DCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFA 225 (282)
Q Consensus 160 ~~yC~~c~~~~~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~~ 225 (282)
...|..|.+.+... ..+.+.++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred CCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 34577777777764 7788999999999999999999999888999999999999999999999963
No 53
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.42 E-value=1.9e-13 Score=95.72 Aligned_cols=65 Identities=17% Similarity=0.460 Sum_probs=58.2
Q ss_pred cccccccccccCC-ceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCcc
Q psy11345 161 LYCEFCFEQYLAP-DCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFA 225 (282)
Q Consensus 161 ~yC~~c~~~~~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~~ 225 (282)
..|..|.+.+... ..+.+.++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred CCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 4577777777765 5788999999999999999999999888999999999999999999999963
No 54
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=1.3e-13 Score=98.51 Aligned_cols=62 Identities=24% Similarity=0.463 Sum_probs=56.5
Q ss_pred CCCcccccCccccCceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccCCc
Q psy11345 110 RVPLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPD 174 (282)
Q Consensus 110 ~~~~C~~C~~~I~~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~ 174 (282)
..++|.+|++.|.+++|.++++.||++||+|. .|+++|... +|.+++.+||+.||.+++++.
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~--~C~~~L~~~-~f~~~g~~yC~~cy~~~f~p~ 75 (79)
T 2cor_A 14 GKYICQKCHAIIDEQPLIFKNDPYHPDHFNCA--NCGKELTAD-ARELKGELYCLPCHDKMGVSG 75 (79)
T ss_dssp CCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCS--SSCCBCCTT-CEEETTEEECHHHHHTTSCCS
T ss_pred CCCCCccCCCEecceEEEECcceeCCCCCEeC--CCCCccCCC-CEeECCEEeCHHHHHHhCCCC
Confidence 34699999999999999999999999999999 999999977 469999999999999988763
No 55
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=8.5e-14 Score=97.50 Aligned_cols=63 Identities=27% Similarity=0.628 Sum_probs=58.2
Q ss_pred CCcccccCcccc--CceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccCCce
Q psy11345 111 VPLCGQCYQQIR--GPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPDC 175 (282)
Q Consensus 111 ~~~C~~C~~~I~--~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~ 175 (282)
.+.|.+|+++|. +.+|.++++.||++||+|. .|+++|....|+.+++++||+.||.++++++|
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C 69 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCFLCS--GCEQPLGSRSFVPDKGAHYCVPCYENKFASGP 69 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTTCBCT--TTCCBTTTSCEEEETTEEEEHHHHHHHTSCCC
T ss_pred CCCCccCCCccccCccEEEECccccCcccCeEC--CCCCcCCCCccCCcCCeEECHHHHHHHccCcC
Confidence 359999999997 6889999999999999999 99999999899999999999999999888765
No 56
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.40 E-value=3.4e-13 Score=97.05 Aligned_cols=62 Identities=21% Similarity=0.370 Sum_probs=55.3
Q ss_pred CCCcccccCcccc-CceeecCCcccCcCCcccccCCCCCCCCCCCce--ecCCccccccccccccCC
Q psy11345 110 RVPLCGQCYQQIR-GPFITALGKIWCPDHFLCVRPQCKRPLQDIGFV--EEDSGLYCEFCFEQYLAP 173 (282)
Q Consensus 110 ~~~~C~~C~~~I~-~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~--~~~~~~yC~~c~~~~~~~ 173 (282)
..+.|.+|++.|. ++.|.++++.||++||+|. .|+++|....|+ .+++++||+.||.+++..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~--~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~ 78 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCFRCH--TCEATLWPGGYEQHPGDGHFYCLQHLPQTDSG 78 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCS--SSCCBCCTTSEECCTTTCCCEETTTCCCCCCC
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCcCEEc--CCCCCcCCCceeEeCcCCEEEChHHHHhhhcC
Confidence 3469999999995 6788999999999999999 999999998887 479999999999988764
No 57
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.40 E-value=9.6e-14 Score=97.23 Aligned_cols=62 Identities=24% Similarity=0.615 Sum_probs=57.6
Q ss_pred CcccccCcccc--CceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccCCce
Q psy11345 112 PLCGQCYQQIR--GPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPDC 175 (282)
Q Consensus 112 ~~C~~C~~~I~--~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~ 175 (282)
++|.+|+++|. +.+|.++++.||++||+|. .|+++|....|+.+++++||+.||.+++++.|
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C 69 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETCFICH--RCQQPIGTKSFIPKDNQNFCVPCYEKQHASGP 69 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTTTCCS--SSCCCCCSSSEEEETTEEEEHHHHHHHTSSCC
T ss_pred CCCccCCCcccCCceEEEECcCeecccCCccc--ccCCccCCCccCccCCeEECHHHHhHHhCCCC
Confidence 59999999997 4689999999999999999 99999999899999999999999999888765
No 58
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=2.2e-13 Score=96.60 Aligned_cols=66 Identities=33% Similarity=0.695 Sum_probs=57.4
Q ss_pred CccccccccccccC-CceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCc
Q psy11345 159 SGLYCEFCFEQYLA-PDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCF 224 (282)
Q Consensus 159 ~~~yC~~c~~~~~~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~ 224 (282)
....|..|.+.+.. ...+.+.++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|.
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 35678888888874 4667899999999999999999999988899999999999999999999985
No 59
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=1.2e-13 Score=98.07 Aligned_cols=64 Identities=23% Similarity=0.522 Sum_probs=57.7
Q ss_pred CCCcccccCcccc--CceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccCCce
Q psy11345 110 RVPLCGQCYQQIR--GPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPDC 175 (282)
Q Consensus 110 ~~~~C~~C~~~I~--~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~ 175 (282)
..+.|.+|+++|. +.+|.++|+.||++||+|. .|+++|....|+.+++++||+.||.+++++.|
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C 75 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCA--QCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCW 75 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCT--TTCCCCGGGCSEEETTEEECHHHHHHHCCCC-
T ss_pred CCCCchhcCCccCCCceEEEeCccEeccccCeEC--CCCCCCCCCCeEeECCeEeCHHHHHHHhhccc
Confidence 3469999999996 5678999999999999999 99999998889999999999999999888765
No 60
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=3.2e-13 Score=98.91 Aligned_cols=66 Identities=30% Similarity=0.557 Sum_probs=56.5
Q ss_pred CccccccccccccCCceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCcc
Q psy11345 159 SGLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFA 225 (282)
Q Consensus 159 ~~~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~~ 225 (282)
....|..|.+.|. .+.+.+.++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus 24 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 3455666666664 45678899999999999999999999888999999999999999999999963
No 61
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=3.7e-13 Score=98.30 Aligned_cols=63 Identities=29% Similarity=0.540 Sum_probs=53.3
Q ss_pred cccccccccccCCceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCc
Q psy11345 161 LYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCF 224 (282)
Q Consensus 161 ~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~ 224 (282)
..|..|.+.|.+ ..+.+.++.||++||+|..|+++|....|+..++++||+.||.++|++++.
T Consensus 26 ~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 26 PLCDKCGSGIVG-AVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CBCTTTCCBCCS-CCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CCcccCCCEecc-cEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 345555555554 457789999999999999999999988899999999999999999999875
No 62
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=3.9e-13 Score=94.17 Aligned_cols=64 Identities=17% Similarity=0.374 Sum_probs=57.0
Q ss_pred ccccccccccccC---CceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCC
Q psy11345 160 GLYCEFCFEQYLA---PDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKC 223 (282)
Q Consensus 160 ~~yC~~c~~~~~~---~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C 223 (282)
...|..|.+.|.. ...+.+.++.||++||+|..|+++|.+..|+.+++++||..||.++|++++
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 4568888888774 477889999999999999999999998889999999999999999999876
No 63
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.38 E-value=1.5e-13 Score=97.33 Aligned_cols=60 Identities=28% Similarity=0.728 Sum_probs=55.7
Q ss_pred CcccccCcccc-CceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccc-cccccccCC
Q psy11345 112 PLCGQCYQQIR-GPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCE-FCFEQYLAP 173 (282)
Q Consensus 112 ~~C~~C~~~I~-~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~-~c~~~~~~~ 173 (282)
|+|.+|+++|. +++|.++|+.||++||+|. .|+++|....|+.+++++||+ .||.+++++
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~--~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~ 62 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCE--KCGKTLTSGGHAEHEGKPYCNHPCYSAMFGP 62 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCT--TTCCBCCTTTEEEETTEEEETTTHHHHHSSC
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCcc--ccCccCCCCceECcCCeEeeCHHHHHHHhCc
Confidence 58999999997 8899999999999999999 999999998999999999999 699887764
No 64
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.38 E-value=6e-13 Score=97.62 Aligned_cols=68 Identities=25% Similarity=0.499 Sum_probs=62.1
Q ss_pred CCccccccccccccCCceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCcc
Q psy11345 158 DSGLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFA 225 (282)
Q Consensus 158 ~~~~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~~ 225 (282)
.....|..|.+.+...+.+.+.++.||++||+|..|+++|....|+..++++||+.||.++|+++|..
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~ 80 (91)
T 2d8y_A 13 PARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNY 80 (91)
T ss_dssp SSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCC
T ss_pred CCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCc
Confidence 35677999999988877889999999999999999999999888999999999999999999999974
No 65
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.38 E-value=3.3e-13 Score=92.86 Aligned_cols=62 Identities=35% Similarity=0.680 Sum_probs=55.4
Q ss_pred ccccccccccccCCceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCC
Q psy11345 160 GLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTK 222 (282)
Q Consensus 160 ~~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~ 222 (282)
...|..|.+.+. ...+.+.++.||++||+|..|+++|.+..|+..++++||+.||.++|+++
T Consensus 5 ~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 356888888887 56788999999999999999999999888999999999999999999864
No 66
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.37 E-value=2e-13 Score=95.57 Aligned_cols=61 Identities=26% Similarity=0.614 Sum_probs=55.3
Q ss_pred CCCcccccCccccC--ceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccC
Q psy11345 110 RVPLCGQCYQQIRG--PFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLA 172 (282)
Q Consensus 110 ~~~~C~~C~~~I~~--~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~ 172 (282)
..+.|.+|+++|.+ .+|.++++.||++||+|. .|+++|....|+.+++++||+.||.+++.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCS--TCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCS--SSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCccc--ccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 34699999999974 589999999999999999 99999988889999999999999988764
No 67
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.36 E-value=3.7e-13 Score=98.74 Aligned_cols=72 Identities=17% Similarity=0.326 Sum_probs=62.2
Q ss_pred CCcccccCccccC-ceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccCCcee--eecCcccc
Q psy11345 111 VPLCGQCYQQIRG-PFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPDCL--NAIGKHYH 184 (282)
Q Consensus 111 ~~~C~~C~~~I~~-~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~~--~~~~~~~H 184 (282)
.+.|.+|++.|.+ +.|.++++.||++||+|. .|+++|....|+.+++++||+.||.+++++.|. ...+..+|
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~--~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g~~~~ 89 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISCFRCS--YCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGSGPS 89 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTTCBCT--TTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCCCCCC
T ss_pred CCcCccCCCccCCceeEEECCCEECCCCCeeC--CCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcCCCCC
Confidence 4699999999974 789999999999999999 999999998899999999999999999988653 33444454
No 68
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.36 E-value=1.5e-13 Score=98.64 Aligned_cols=64 Identities=22% Similarity=0.560 Sum_probs=55.7
Q ss_pred CCCcccccCcccc-CceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccCCce
Q psy11345 110 RVPLCGQCYQQIR-GPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPDC 175 (282)
Q Consensus 110 ~~~~C~~C~~~I~-~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~ 175 (282)
..+.|.+|+++|. ++.|.++++.||++||+|. .|+++|....|+.+++++||+.||.++++++|
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c 70 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCM--VCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKG 70 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEETTEEEESSSEECS--SSCCEECSSCCEEETTEEECSHHHHHHCC---
T ss_pred CCCcCcCcCccccCceeEEeCCcccccccCccC--CCCCCCCCCCeEeeCCEEECHHHHHHHhCCcc
Confidence 3469999999995 7889999999999999999 99999999899999999999999998877654
No 69
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.35 E-value=7.9e-13 Score=102.46 Aligned_cols=61 Identities=15% Similarity=0.386 Sum_probs=54.9
Q ss_pred CCCcccccCccccCc-eeecCCcccCcCCcccccCCCCCCCC--CCCceecCCccccccccccccC
Q psy11345 110 RVPLCGQCYQQIRGP-FITALGKIWCPDHFLCVRPQCKRPLQ--DIGFVEEDSGLYCEFCFEQYLA 172 (282)
Q Consensus 110 ~~~~C~~C~~~I~~~-~v~~~~~~~H~~Cf~C~~~~C~~~l~--~~~~~~~~~~~yC~~c~~~~~~ 172 (282)
..+.|.+|+++|.+. +|.++++.||++||+|. .|+.+|. ...|+.+++++||+.||.++|+
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~--~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCS--SCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTTSBCT--TTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEcccccCcC--cCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 347999999999887 59999999999999999 9999997 3689999999999999988764
No 70
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.34 E-value=1.3e-12 Score=90.92 Aligned_cols=65 Identities=23% Similarity=0.495 Sum_probs=56.9
Q ss_pred CccccccccccccCCceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCc
Q psy11345 159 SGLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCF 224 (282)
Q Consensus 159 ~~~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~ 224 (282)
+...|..|.+.+.+ ..+.+.++.||++||+|..|+++|....|+..++++||+.||.++|+++..
T Consensus 4 ~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 4 GSSGCHQCGEFIIG-RVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp CSSBCSSSCCBCCS-CCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CCCcCccCCCEecc-eEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 45668888888774 568899999999999999999999988899999999999999999987653
No 71
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.33 E-value=3.7e-13 Score=96.09 Aligned_cols=65 Identities=23% Similarity=0.500 Sum_probs=58.0
Q ss_pred CccccccccccccCCceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCc
Q psy11345 159 SGLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCF 224 (282)
Q Consensus 159 ~~~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~ 224 (282)
....|..|.+.|.+ ..+.+.++.||++||+|..|+++|.+..|+..++++||+.||.++|++++.
T Consensus 14 ~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCCSSSCCCCCS-SCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCCccccCCCCccC-cEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 45678888888876 478899999999999999999999877799999999999999999998865
No 72
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.33 E-value=4.1e-13 Score=92.20 Aligned_cols=57 Identities=23% Similarity=0.498 Sum_probs=53.3
Q ss_pred CcccccCcccc--CceeecCCcccC--cCCcccccCCCCCCCCCCCceecCCcccc-ccccccc
Q psy11345 112 PLCGQCYQQIR--GPFITALGKIWC--PDHFLCVRPQCKRPLQDIGFVEEDSGLYC-EFCFEQY 170 (282)
Q Consensus 112 ~~C~~C~~~I~--~~~v~~~~~~~H--~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC-~~c~~~~ 170 (282)
+.|.+|+++|. ++.|.++|+.|| ++||+|. .|+++|....|+.+++++|| ..|+.++
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~--~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCS--CCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCT--TTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECC--CCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 58999999998 689999999999 9999999 99999999999999999999 8898765
No 73
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=5.4e-13 Score=94.65 Aligned_cols=57 Identities=26% Similarity=0.616 Sum_probs=53.3
Q ss_pred CcccccCccccC-----ceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccc
Q psy11345 112 PLCGQCYQQIRG-----PFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQY 170 (282)
Q Consensus 112 ~~C~~C~~~I~~-----~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~ 170 (282)
+.|.+|+++|.+ ++|.++++.||++||+|. .|+++|....|+.+++++||+.||.++
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~--~C~~~L~~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCK--KCSVNLANKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCS--SSCCBCTTSCCCEETTEECCHHHHHHC
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCcccCEeh--hcCCCCCCCccEeECCEEEChHHhccC
Confidence 689999999986 789999999999999999 999999998999999999999998754
No 74
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.32 E-value=3.6e-12 Score=90.93 Aligned_cols=64 Identities=23% Similarity=0.376 Sum_probs=56.2
Q ss_pred CccccccccccccCCceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCc
Q psy11345 159 SGLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCF 224 (282)
Q Consensus 159 ~~~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~ 224 (282)
+.+.|..|.+.|. ...+.+.++.||++||+|..|+++|.+.. |.+++++||+.||.++|++++.
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCCSSC
T ss_pred CCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCCCCC
Confidence 4577999998888 45688999999999999999999998764 5899999999999999988764
No 75
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.31 E-value=1.5e-12 Score=91.03 Aligned_cols=66 Identities=21% Similarity=0.451 Sum_probs=56.3
Q ss_pred ccccccccccccCC-ceeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCccC
Q psy11345 160 GLYCEFCFEQYLAP-DCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFAC 226 (282)
Q Consensus 160 ~~yC~~c~~~~~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~~C 226 (282)
...|..|.+.+... ..+.+.++.||++||+|..|+++|.+..|+..++++||..||.++| .+|..+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~-~~~~~~ 71 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL-ESGPSS 71 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH-HTCSSC
T ss_pred CCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHH-ccCCCC
Confidence 45677888777763 5788999999999999999999998777999999999999999998 556544
No 76
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.29 E-value=1.8e-12 Score=90.43 Aligned_cols=66 Identities=33% Similarity=0.732 Sum_probs=56.8
Q ss_pred eecCCccccccccccccCCc-eeeecCccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccC
Q psy11345 155 VEEDSGLYCEFCFEQYLAPD-CLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFT 220 (282)
Q Consensus 155 ~~~~~~~yC~~c~~~~~~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~ 220 (282)
|.......|..|.+.+.... .+.+.++.||++||+|..|+++|....|+..++++||+.||.++|+
T Consensus 6 y~~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 6 FQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CCCCTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred ccCcCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 33445677888888888654 5679999999999999999999988789999999999999999874
No 77
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.28 E-value=9.6e-13 Score=91.87 Aligned_cols=60 Identities=23% Similarity=0.537 Sum_probs=54.1
Q ss_pred CCcccccCccccC--ceeecCCcccCcCCcccccCCCCCCCCCCCceecCCccccccccccccC
Q psy11345 111 VPLCGQCYQQIRG--PFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLA 172 (282)
Q Consensus 111 ~~~C~~C~~~I~~--~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~ 172 (282)
.+.|.+|++.|.+ .+|.++|+.||++||+|. .|+++|....|+.+++++||+.||.++|+
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~--~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCA--QCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEETTEEEETTTSSCT--TTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred CccchhcCccccCCceEEEeCcCeeCcCCCccc--CCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 3599999999973 367899999999999999 99999998899999999999999988763
No 78
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.27 E-value=2.5e-12 Score=92.45 Aligned_cols=66 Identities=21% Similarity=0.447 Sum_probs=57.2
Q ss_pred CCccccccccccccCCceeeecCccccccCccCCccCcccCCCCee--eeCCeecCHhhhhcccCCCC
Q psy11345 158 DSGLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFF--LEEGLPYCENDWNDLFTTKC 223 (282)
Q Consensus 158 ~~~~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~--~~~~~~yC~~c~~~~~~~~C 223 (282)
.+...|..|.+.+...+.+.+.++.||.+||+|..|+++|....|+ .+++++||+.||.++|...+
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~ 80 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS 80 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCC
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCC
Confidence 3567788888888877778899999999999999999999988877 46899999999999987544
No 79
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.25 E-value=6.5e-12 Score=88.19 Aligned_cols=61 Identities=26% Similarity=0.521 Sum_probs=52.0
Q ss_pred cccccccccccCCceeeecCccccccCccCCccCcccC-CCCeeeeCCeecCHhhhhcccCCC
Q psy11345 161 LYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFG-NNPFFLEEGLPYCENDWNDLFTTK 222 (282)
Q Consensus 161 ~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~f~~~~~~~yC~~c~~~~~~~~ 222 (282)
+.|..|.+.|.+ ..+.+.++.||++||+|..|+++|. +..|++.++++||..||.++++..
T Consensus 6 ~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 6 SGCDSCEKYITG-RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp CSCSSSCCCCSS-CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred CCcccCCCEecC-eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 456777777765 5678899999999999999999998 666999999999999999988653
No 80
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.23 E-value=5.4e-12 Score=97.72 Aligned_cols=60 Identities=25% Similarity=0.556 Sum_probs=50.6
Q ss_pred cccccccccccCCceeeecCccccccCccCCccCcccC--CCCeeeeCCeecCHhhhhcccC
Q psy11345 161 LYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFG--NNPFFLEEGLPYCENDWNDLFT 220 (282)
Q Consensus 161 ~yC~~c~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~~~f~~~~~~~yC~~c~~~~~~ 220 (282)
..|..|.+.|.....+.+.++.||++||+|..|+++|. +..|+.+++++||+.||.++|+
T Consensus 62 ~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 44556666666666688899999999999999999997 3569999999999999999885
No 81
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.22 E-value=4.7e-12 Score=90.70 Aligned_cols=60 Identities=30% Similarity=0.567 Sum_probs=53.9
Q ss_pred CcccccCccccCceeecCCcccCcCCcccccCCCCCCCCCCCceecCCc-cccccccccccCC
Q psy11345 112 PLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSG-LYCEFCFEQYLAP 173 (282)
Q Consensus 112 ~~C~~C~~~I~~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~~~~~~~~~~-~yC~~c~~~~~~~ 173 (282)
+.|.+|+++|.+++|.++++.||++||+|. .|+++|....++..++. +||..|+.++...
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~--~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSALGKTYHPDCFVCA--VCRLPFPPGDRVTFNGKECMCQKCSLPVSVS 76 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTTSSCS--SSCCCCCSSSCEEEETTEEEEHHHHSCCSSC
T ss_pred CcCccccCEeccceEEECCceeCccCCccc--cCCCCCCCCCEEEeCCCCEEChhhhcccCCC
Confidence 489999999999999999999999999999 99999988777777776 6999999887754
No 82
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.21 E-value=6e-12 Score=97.49 Aligned_cols=74 Identities=28% Similarity=0.436 Sum_probs=63.0
Q ss_pred cccccccccccCC-ceeeecCccccccCccCCccCcccC-CCCeeeeCCeecCHhhhhcccCCCCccCCCccccCC
Q psy11345 161 LYCEFCFEQYLAP-DCLNAIGKHYHPECFTCAYCGKLFG-NNPFFLEEGLPYCENDWNDLFTTKCFACGFPIEAGD 234 (282)
Q Consensus 161 ~yC~~c~~~~~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~f~~~~~~~yC~~c~~~~~~~~C~~C~~~I~~~~ 234 (282)
..|..|.+.+... ..+.+.++.||++||+|..|+++|. +..|+..++++||..||.++++++|..+...+..++
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~ 84 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSGGD 84 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSCCSC
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCccCC
Confidence 3677777777763 5678899999999999999999995 445999999999999999999999999988876444
No 83
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.18 E-value=7.5e-12 Score=96.91 Aligned_cols=60 Identities=25% Similarity=0.449 Sum_probs=52.5
Q ss_pred hhcccCC--CCccCCCccccCCcEEEeCCcccccCCCcCCCCCCCCCCCCcccccCCceecCCCeeecC
Q psy11345 215 WNDLFTT--KCFACGFPIEAGDRWVEALNNNYHSLCFNCSSPSSPALSGAKPYGTQNTIKSTSGTIVCL 281 (282)
Q Consensus 215 ~~~~~~~--~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~g~~~~~~~~~~~~~~g~~~C~ 281 (282)
|.++|+. +|..|+++|.+++.++.+.++.||++||+|..|++.|..|..|+ ..++.+||+
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~-------~~~g~~yC~ 62 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYL-------LINSDIVCE 62 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEE-------ECSSSEEEG
T ss_pred ChhhhCCCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEE-------eeCCEEEcH
Confidence 5678888 99999999998778889999999999999999999965777666 778899996
No 84
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.17 E-value=2.6e-11 Score=83.08 Aligned_cols=58 Identities=22% Similarity=0.518 Sum_probs=50.8
Q ss_pred cccccccccccC-CceeeecCcccc--ccCccCCccCcccCCCCeeeeCCeecC-Hhhhhcc
Q psy11345 161 LYCEFCFEQYLA-PDCLNAIGKHYH--PECFTCAYCGKLFGNNPFFLEEGLPYC-ENDWNDL 218 (282)
Q Consensus 161 ~yC~~c~~~~~~-~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~f~~~~~~~yC-~~c~~~~ 218 (282)
..|..|.+.+.. ...+.+.++.|| ++||+|..|+++|.+..|+.+++++|| ..||.++
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 357777777776 378899999999 999999999999998889999999999 9998765
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.39 E-value=3.2e-05 Score=44.31 Aligned_cols=29 Identities=28% Similarity=0.658 Sum_probs=25.2
Q ss_pred CCCCccCCCccccCCcEEEeCCcccccCCC
Q psy11345 220 TTKCFACGFPIEAGDRWVEALNNNYHSLCF 249 (282)
Q Consensus 220 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf 249 (282)
.++|..|++.+.+.+ .+.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~E-k~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTE-KVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGG-CCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecce-eEEECCeEecccCC
Confidence 478999999999875 45589999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.21 E-value=0.0001 Score=42.21 Aligned_cols=27 Identities=26% Similarity=0.639 Sum_probs=24.3
Q ss_pred CcccccCcccc-CceeecCCcccCcCCc
Q psy11345 112 PLCGQCYQQIR-GPFITALGKIWCPDHF 138 (282)
Q Consensus 112 ~~C~~C~~~I~-~~~v~~~~~~~H~~Cf 138 (282)
..|.+|++.|. .+.|.+.|+.||..||
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEECCeEecccCC
Confidence 48999999996 5788899999999998
No 87
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=73.54 E-value=0.87 Score=33.93 Aligned_cols=97 Identities=16% Similarity=0.374 Sum_probs=55.9
Q ss_pred CCcccccCccccCc-------eeecCCcccCcCCc--------ccccCCCCCCCCCCCceecCCccccccccccccCCce
Q psy11345 111 VPLCGQCYQQIRGP-------FITALGKIWCPDHF--------LCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPDC 175 (282)
Q Consensus 111 ~~~C~~C~~~I~~~-------~v~~~~~~~H~~Cf--------~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~ 175 (282)
...|.-|...+.+. ++..-|..||.+|+ +|- .|+..+.......
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP--~Cr~~~~~~~l~~------------------- 65 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCP--TCRKKINHKRYHP------------------- 65 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCT--TTCCBCTTTCEEE-------------------
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCC--CCCCcCccccccc-------------------
Confidence 35799998877543 44455777777775 454 6666654432211
Q ss_pred eeecCccccccCccCCccCcccCCC-----C-eeeeCCeecCHhhhhcc--cCCCCccCCCccccC
Q psy11345 176 LNAIGKHYHPECFTCAYCGKLFGNN-----P-FFLEEGLPYCENDWNDL--FTTKCFACGFPIEAG 233 (282)
Q Consensus 176 ~~~~~~~~H~~Cf~C~~C~~~l~~~-----~-f~~~~~~~yC~~c~~~~--~~~~C~~C~~~I~~~ 233 (282)
...-.+=+.|..|...+... . ....=+..||..|..+. ....|..|+..|...
T Consensus 66 -----l~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 66 -----IYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp -----CBCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred -----cccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 01112334566666555321 1 22234678888886543 246899999998753
No 88
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=72.33 E-value=5.4 Score=28.74 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=41.6
Q ss_pred cCCccCcccCCCCeeeeCCeecCHhhhhc---ccCCCCccCCCccccCCcEEEeCCcccccCCCcCC---CCCCCCCC
Q psy11345 189 TCAYCGKLFGNNPFFLEEGLPYCENDWND---LFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCS---SPSSPALS 260 (282)
Q Consensus 189 ~C~~C~~~l~~~~f~~~~~~~yC~~c~~~---~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~---~C~~~l~~ 260 (282)
.|..|+.++....-.+-=...+|-+|+.. .-...|..|+.+|..=+. ..+|..| .|. .|.+.+|+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~--~~~~~if-----~C~~~~~CkrtyLs 73 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ--CTRGSLF-----MCSIVQGCKRTYLS 73 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE--EEGGGCC-----CCCCCCCCCCCCSS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE--eccCCEE-----ECCCCCCHHHHhcC
Confidence 48889999864332233367899999865 334689999999972111 2335544 455 67777544
No 89
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=69.03 E-value=1 Score=33.50 Aligned_cols=61 Identities=20% Similarity=0.333 Sum_probs=36.2
Q ss_pred cCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCccCCCcccc----CCc-EEEeCCcccccCCC--------cCCCCC
Q psy11345 189 TCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFACGFPIEA----GDR-WVEALNNNYHSLCF--------NCSSPS 255 (282)
Q Consensus 189 ~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~~C~~~I~~----~~~-~~~~~~~~~H~~Cf--------~C~~C~ 255 (282)
.|-.|+..+........ | ...-...|..|...+.. +.. ++..-|..||..|. .|-.|.
T Consensus 50 ~CP~Cr~~~~~~~l~~l----~-----i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr 120 (133)
T 4ap4_A 50 TCPTCRKKINHKRYHPI----Y-----IGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 120 (133)
T ss_dssp BCTTTCCBCTTTCEEEC----B-----CSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTC
T ss_pred CCCCCCCcCcccccccc----c-----cCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCC
Confidence 78899998876553211 0 00112457777766642 111 33445777887765 599998
Q ss_pred CCC
Q psy11345 256 SPA 258 (282)
Q Consensus 256 ~~l 258 (282)
..+
T Consensus 121 ~~~ 123 (133)
T 4ap4_A 121 KKI 123 (133)
T ss_dssp CBC
T ss_pred CcC
Confidence 884
No 90
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.96 E-value=4.5 Score=26.64 Aligned_cols=44 Identities=16% Similarity=0.428 Sum_probs=29.6
Q ss_pred ccCCccCcccCCCCeee-eCCeecCHhhhhccc--CCCCccCCCcccc
Q psy11345 188 FTCAYCGKLFGNNPFFL-EEGLPYCENDWNDLF--TTKCFACGFPIEA 232 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~-~~~~~yC~~c~~~~~--~~~C~~C~~~I~~ 232 (282)
+.|..|...+.. ...+ .=+..||..|..+.+ ...|..|+..|..
T Consensus 16 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 16 ILCSICKGYLID-ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GSCTTTSSCCSS-CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCChHHHC-cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 567777766654 2233 446788998876544 4678888888864
No 91
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=67.58 E-value=5.4 Score=26.61 Aligned_cols=46 Identities=17% Similarity=0.361 Sum_probs=33.9
Q ss_pred cCccCCccCcccCCCCeeeeCCeecCHhhhhcccC---CCCccCCCcccc
Q psy11345 186 ECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFT---TKCFACGFPIEA 232 (282)
Q Consensus 186 ~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~---~~C~~C~~~I~~ 232 (282)
+-|.|..|...+.. .....-|..||..|..+.+. ..|..|+.++..
T Consensus 7 ~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccC-CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 34788899887753 34556789999999776553 468999888864
No 92
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.98 E-value=3.8 Score=26.45 Aligned_cols=44 Identities=27% Similarity=0.524 Sum_probs=30.1
Q ss_pred ccCCccCcccCCCCeeeeCCeecCHhhhhccc---CCCCccCCCcccc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWNDLF---TTKCFACGFPIEA 232 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~---~~~C~~C~~~I~~ 232 (282)
+.|..|...+... ....=|..||..|..+.+ ...|..|+..|..
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 16 YKCEKCHLVLCSP-KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp EECTTTCCEESSC-CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCChHhcCe-eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 5677777666432 224457789999987765 2478889888864
No 93
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.89 E-value=4.8 Score=26.43 Aligned_cols=44 Identities=18% Similarity=0.473 Sum_probs=29.9
Q ss_pred ccCCccCcccCCCCeeeeCCeecCHhhhhcccC-----CCCccCCCcccc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFT-----TKCFACGFPIEA 232 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~-----~~C~~C~~~I~~ 232 (282)
+.|..|...+.. .....=+..||..|..+.+. ..|..|+.+|..
T Consensus 21 ~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 21 VICPICLDILQK-PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CBCTTTCSBCSS-EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CEeccCCcccCC-eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 567777776653 23334577899999877653 378888888763
No 94
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=64.00 E-value=5.3 Score=25.48 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=24.1
Q ss_pred cCCccCcccCCCCeeeeCCeecC-Hhhhhc
Q psy11345 189 TCAYCGKLFGNNPFFLEEGLPYC-ENDWND 217 (282)
Q Consensus 189 ~C~~C~~~l~~~~f~~~~~~~yC-~~c~~~ 217 (282)
.|..|+..+...+-++.+|+.|| +.|...
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 47889999887777889999998 888654
No 95
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=61.79 E-value=6.4 Score=28.74 Aligned_cols=43 Identities=26% Similarity=0.513 Sum_probs=30.2
Q ss_pred ccCCccCcccCCCCeee-eCCeecCHhhhhcccCCCCccCCCccc
Q psy11345 188 FTCAYCGKLFGNNPFFL-EEGLPYCENDWNDLFTTKCFACGFPIE 231 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~-~~~~~yC~~c~~~~~~~~C~~C~~~I~ 231 (282)
+.|..|...+.. .... .=|..||..|....+...|..|+.++.
T Consensus 23 ~~C~IC~~~~~~-pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 23 LRCSRCTNILRE-PVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TSCSSSCSCCSS-CBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCChHhhC-ccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCc
Confidence 667777766643 2333 457788888887776678888888875
No 96
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.60 E-value=4.2 Score=26.53 Aligned_cols=43 Identities=14% Similarity=0.384 Sum_probs=28.5
Q ss_pred ccCCccCcccCCCCeeeeCCeecCHhhhhcccC--CCCccCCCcccc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFT--TKCFACGFPIEA 232 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~--~~C~~C~~~I~~ 232 (282)
+.|..|...+.. ....=+..||..|..+.+. ..|..|+.+|..
T Consensus 16 ~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 16 EECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 566777666654 3344467788888766543 578888877764
No 97
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=54.81 E-value=2.9 Score=30.96 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=20.5
Q ss_pred CCCccCCCccccCCcEEEeC----------CcccccCCCc
Q psy11345 221 TKCFACGFPIEAGDRWVEAL----------NNNYHSLCFN 250 (282)
Q Consensus 221 ~~C~~C~~~I~~~~~~~~~~----------~~~~H~~Cf~ 250 (282)
..|..|+..|.-|+-.|... .++||..||.
T Consensus 21 A~Ck~Ck~kI~KgeLRiG~~v~~~~~dG~~~~W~H~~Cf~ 60 (114)
T 1v9x_A 21 SSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCIL 60 (114)
T ss_dssp CBCSSSCCBCCSSSEEEEECCCCSSSSCCCCEEEEHHHHH
T ss_pred CCchhhCCccCCCCEEEEEEecCcccCCCcceeECccccc
Confidence 57889999998766333221 3467889986
No 98
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=53.14 E-value=11 Score=27.28 Aligned_cols=43 Identities=16% Similarity=0.387 Sum_probs=29.5
Q ss_pred ccCCccCcccCCCCeeeeCCeecCHhhhhcccC---CCCccCCCccc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFT---TKCFACGFPIE 231 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~---~~C~~C~~~I~ 231 (282)
+.|..|...+.. .....=|..||..|..+.+. ..|..|+..+.
T Consensus 16 ~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGICMEILVE-PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HBCTTTCSBCSS-CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCccCCcccCc-eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 667777766643 23334467899999877663 47888888875
No 99
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.96 E-value=11 Score=25.17 Aligned_cols=44 Identities=23% Similarity=0.583 Sum_probs=27.4
Q ss_pred ccCCccCcccCCCCeeeeCCeecCHhhhhccc--------CCCCccCCCcccc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWNDLF--------TTKCFACGFPIEA 232 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~--------~~~C~~C~~~I~~ 232 (282)
+.|..|...+.. .....=+..||..|..+.+ ...|..|+..+..
T Consensus 20 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 20 VTCPICLELLTQ-PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCTTTCSCCSS-CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCcccCC-ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 566777666643 2223346678888876543 3578888877763
No 100
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=52.83 E-value=3.5 Score=30.10 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=20.5
Q ss_pred CCCccCCCccccCCcEEEe----C------CcccccCCCc
Q psy11345 221 TKCFACGFPIEAGDRWVEA----L------NNNYHSLCFN 250 (282)
Q Consensus 221 ~~C~~C~~~I~~~~~~~~~----~------~~~~H~~Cf~ 250 (282)
.+|..|+..|.-|+-.|.. . .++||..||.
T Consensus 26 a~Ck~C~~kI~KgelRig~~v~~~~~~g~~~~W~H~~Cf~ 65 (106)
T 2dmj_A 26 ASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 65 (106)
T ss_dssp CBCSSSCCBCCTTCEEEEEEEEETTTTEEEEEEEETTHHH
T ss_pred CcchhhCCccCCCCEEEEEEecCCCCCCCcCEeECcCccc
Confidence 5899999999876633211 1 2477999987
No 101
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.05 E-value=15 Score=23.95 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=29.5
Q ss_pred CccCCccCcccCCCCeeeeCCeecCHhhhhcccC--CCCccCCCccc
Q psy11345 187 CFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFT--TKCFACGFPIE 231 (282)
Q Consensus 187 Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~--~~C~~C~~~I~ 231 (282)
-+.|.+|...+.. .....=+..||..|..+.+. ..|..|+..|.
T Consensus 15 ~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 15 VPECAICLQTCVH-PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp CCBCSSSSSBCSS-EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCccCCcccCC-CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 3567777776643 23334577889999766433 57888888876
No 102
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=51.95 E-value=15 Score=23.35 Aligned_cols=47 Identities=26% Similarity=0.547 Sum_probs=30.3
Q ss_pred ccCCccCc-ccCCCC---eeeeCCeecCHhhhhccc---CCCCccCCCccccCC
Q psy11345 188 FTCAYCGK-LFGNNP---FFLEEGLPYCENDWNDLF---TTKCFACGFPIEAGD 234 (282)
Q Consensus 188 f~C~~C~~-~l~~~~---f~~~~~~~yC~~c~~~~~---~~~C~~C~~~I~~~~ 234 (282)
+.|..|.. .+.+.. ....=|..+|..|..+.+ ...|..|++++...+
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 56777777 443322 223347788999977653 356999998887533
No 103
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=50.07 E-value=9.6 Score=25.50 Aligned_cols=44 Identities=18% Similarity=0.412 Sum_probs=27.9
Q ss_pred ccCCccCcccCCCCeeeeCCeecCHhhhhccc--------CCCCccCCCcccc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWNDLF--------TTKCFACGFPIEA 232 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~--------~~~C~~C~~~I~~ 232 (282)
+.|..|...+... ....=+..||..|..+.+ ...|..|+..+..
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 20 VTCPICLELLKEP-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TSCTTTCSCCSSC-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCcCCChhhCcc-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 5677776666432 233346778888876532 3468888877764
No 104
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=48.59 E-value=8.2 Score=27.09 Aligned_cols=45 Identities=18% Similarity=0.508 Sum_probs=29.8
Q ss_pred CccCCccCcccCCCCeee-eCCeecCHhhhhcccC--CCCccCCCcccc
Q psy11345 187 CFTCAYCGKLFGNNPFFL-EEGLPYCENDWNDLFT--TKCFACGFPIEA 232 (282)
Q Consensus 187 Cf~C~~C~~~l~~~~f~~-~~~~~yC~~c~~~~~~--~~C~~C~~~I~~ 232 (282)
-+.|..|...+.. .... .=|..||..|..+.+. ..|..|+..+..
T Consensus 22 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI-AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC-cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 3677888777654 2233 4577889999766543 478888887763
No 105
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=48.11 E-value=5.5 Score=26.22 Aligned_cols=27 Identities=15% Similarity=0.416 Sum_probs=14.9
Q ss_pred CCccCCCccccCCcEEEeC---CcccccCC
Q psy11345 222 KCFACGFPIEAGDRWVEAL---NNNYHSLC 248 (282)
Q Consensus 222 ~C~~C~~~I~~~~~~~~~~---~~~~H~~C 248 (282)
.|..|++++.+++.+|.-. ...||..|
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred cCccCCCccCCCCCeEecccCccccCchhc
Confidence 5666666665544555444 45566543
No 106
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=47.92 E-value=14 Score=24.98 Aligned_cols=45 Identities=24% Similarity=0.550 Sum_probs=28.1
Q ss_pred ccCCccCcccCCCC--eee-eCCeecCHhhhhccc---CCCCccCCCcccc
Q psy11345 188 FTCAYCGKLFGNNP--FFL-EEGLPYCENDWNDLF---TTKCFACGFPIEA 232 (282)
Q Consensus 188 f~C~~C~~~l~~~~--f~~-~~~~~yC~~c~~~~~---~~~C~~C~~~I~~ 232 (282)
+.|.+|-.++.... +.. .=|..+|..|+.+.. ...|..|++++..
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 45666666664322 211 146678999987654 3578888888863
No 107
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=47.92 E-value=6.3 Score=26.12 Aligned_cols=43 Identities=16% Similarity=0.444 Sum_probs=27.2
Q ss_pred ccCCccCcccCCCCeeee-CCeecCHhhhhcccC----CCCccCCCccc
Q psy11345 188 FTCAYCGKLFGNNPFFLE-EGLPYCENDWNDLFT----TKCFACGFPIE 231 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~-~~~~yC~~c~~~~~~----~~C~~C~~~I~ 231 (282)
+.|..|...+.. ..... =+..||..|..+.+. ..|..|+.++.
T Consensus 16 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 16 LLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GSCSSSCCCCTT-CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCcCCChHHhC-CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 567777666643 33344 377888888766542 46777877654
No 108
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=47.53 E-value=11 Score=24.85 Aligned_cols=43 Identities=26% Similarity=0.550 Sum_probs=23.7
Q ss_pred ccCCccCcccCCCCeeeeCCeecCHhhhhcccC---------CCCccCCCccc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFT---------TKCFACGFPIE 231 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~---------~~C~~C~~~I~ 231 (282)
+.|..|...+.. .....=|..||..|..+.+. ..|..|+..+.
T Consensus 13 ~~C~IC~~~~~~-p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 13 VTCPICLELLTE-PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CEETTTTEECSS-CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred CCCcCCCcccCC-eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 456666655543 12233456778888765442 35666665554
No 109
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=47.34 E-value=7 Score=31.95 Aligned_cols=30 Identities=27% Similarity=0.554 Sum_probs=24.7
Q ss_pred ccCCccCcccCCCCeeeeCCeecCHhhhhc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWND 217 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~yC~~c~~~ 217 (282)
..|..|+.......-...+++++|..|+.+
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 569999998876555677899999999875
No 110
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.68 E-value=11 Score=25.29 Aligned_cols=43 Identities=30% Similarity=0.698 Sum_probs=27.7
Q ss_pred ccCCccCcccCCCCeeeeCCeecCHhhhhccc--CCCCccCCCccc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWNDLF--TTKCFACGFPIE 231 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~--~~~C~~C~~~I~ 231 (282)
+.|..|...+.. .....=+..||..|..+.+ ...|..|+.++.
T Consensus 16 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQN-PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhcC-eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 567777666643 2333446788888876543 356888888775
No 111
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=44.45 E-value=23 Score=23.39 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=28.7
Q ss_pred ccCCccCcccCCCCeeeeCCee-cCHhhhhcccCCCCccCCCccc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLP-YCENDWNDLFTTKCFACGFPIE 231 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~-yC~~c~~~~~~~~C~~C~~~I~ 231 (282)
+.|..|...+.. ...+.=|.. +|..|.... ..|..|+.+|.
T Consensus 25 ~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~ 66 (74)
T 4ic3_A 25 KLCKICMDRNIA-IVFVPCGHLVTCKQCAEAV--DKCPMCYTVIT 66 (74)
T ss_dssp TBCTTTSSSBCC-EEEETTCCBCCCHHHHTTC--SBCTTTCCBCS
T ss_pred CCCCCCCCCCCC-EEEcCCCChhHHHHhhhcC--ccCCCcCcCcc
Confidence 467777666543 222334666 999998776 78999999986
No 112
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=44.12 E-value=16 Score=27.34 Aligned_cols=43 Identities=21% Similarity=0.502 Sum_probs=29.9
Q ss_pred ccCCccCcccCCCCeeeeCCeecCHhhhhccc--CCCCccCCCccc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWNDLF--TTKCFACGFPIE 231 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~--~~~C~~C~~~I~ 231 (282)
+.|..|...+.. .....=|..||..|..+.+ ...|..|+.+|.
T Consensus 54 ~~C~iC~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYFIE-AVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBCSS-EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCCcccCcccCC-ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 568888777643 2344457789999976543 357999998885
No 113
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=43.61 E-value=12 Score=26.69 Aligned_cols=45 Identities=18% Similarity=0.438 Sum_probs=30.6
Q ss_pred CccCCccCcccCCCCeee-eCCeecCHhhhhcccC--CCCccCCCcccc
Q psy11345 187 CFTCAYCGKLFGNNPFFL-EEGLPYCENDWNDLFT--TKCFACGFPIEA 232 (282)
Q Consensus 187 Cf~C~~C~~~l~~~~f~~-~~~~~yC~~c~~~~~~--~~C~~C~~~I~~ 232 (282)
-+.|..|...+.. .... .=|..||..|..+.+. ..|..|+..+..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhC-cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 3677888777653 3333 4578889999766543 578888887763
No 114
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=43.00 E-value=4.8 Score=29.91 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=19.8
Q ss_pred CCCccCCCccccCCcEEE----eC--------CcccccCCCc
Q psy11345 221 TKCFACGFPIEAGDRWVE----AL--------NNNYHSLCFN 250 (282)
Q Consensus 221 ~~C~~C~~~I~~~~~~~~----~~--------~~~~H~~Cf~ 250 (282)
..|..|+..|.-|+-.|. .. ..+||..||.
T Consensus 16 A~Ck~C~~kI~KgeLRiG~~v~~~~~~~~g~~~~W~H~~Cf~ 57 (117)
T 1uw0_A 16 AGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMF 57 (117)
T ss_dssp EECTTSSCEECTTCEEEEEEEECTTCSSCCEECCBCCHHHHH
T ss_pred ccchhhCcccCCCCeEEEEEeccccccCCCCCCeeECcccch
Confidence 478889999987663321 11 2467889986
No 115
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.72 E-value=16 Score=24.69 Aligned_cols=45 Identities=20% Similarity=0.457 Sum_probs=29.0
Q ss_pred ccCCccCcccCCCC---eeeeCCeecCHhhhhcccC-----CCCccCCCcccc
Q psy11345 188 FTCAYCGKLFGNNP---FFLEEGLPYCENDWNDLFT-----TKCFACGFPIEA 232 (282)
Q Consensus 188 f~C~~C~~~l~~~~---f~~~~~~~yC~~c~~~~~~-----~~C~~C~~~I~~ 232 (282)
+.|..|...+.... ....=+..||..|..+.+. ..|..|+..+..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 56777777665432 2223467889999766542 578888887763
No 116
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=41.94 E-value=13 Score=26.44 Aligned_cols=44 Identities=20% Similarity=0.437 Sum_probs=28.2
Q ss_pred ccCCccCcccCCCCeeeeCCeecCHhhhhcccC-----CCCccCCCcccc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFT-----TKCFACGFPIEA 232 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~-----~~C~~C~~~I~~ 232 (282)
+.|..|...+.. .....=|..||..|..+.+. ..|..|+.++..
T Consensus 22 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKE-PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSS-CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcC-eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 567777666643 22233467788888766543 268888887764
No 117
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=41.06 E-value=16 Score=22.61 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=19.8
Q ss_pred ccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCccCCCccc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFACGFPIE 231 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~~C~~~I~ 231 (282)
+.|..|...+..- ..+.=+..+|..|..+ ....|..|+..+.
T Consensus 7 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~-~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 7 LRCQQCQAEAKCP-KLLPCLHTLCSGCLEA-SGMQCPICQAPWP 48 (56)
T ss_dssp SSCSSSCSSCBCC-SCSTTSCCSBTTTCSS-SSSSCSSCCSSSS
T ss_pred CCceEeCCccCCe-EEcCCCCcccHHHHcc-CCCCCCcCCcEee
Confidence 3455555444321 1122344455555443 2345666666654
No 118
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=40.33 E-value=12 Score=29.04 Aligned_cols=43 Identities=16% Similarity=0.378 Sum_probs=28.1
Q ss_pred ccCCccCcccCCCCeee-eCCeecCHhhhhccc---CCCCccCCCccc
Q psy11345 188 FTCAYCGKLFGNNPFFL-EEGLPYCENDWNDLF---TTKCFACGFPIE 231 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~-~~~~~yC~~c~~~~~---~~~C~~C~~~I~ 231 (282)
+.|..|...+.. .... .=|..||..|..+.+ ...|..|+.++.
T Consensus 55 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKN-TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccChHhhC-cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 567777666653 2222 346788888876654 346999998885
No 119
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=39.39 E-value=34 Score=20.57 Aligned_cols=24 Identities=13% Similarity=0.362 Sum_probs=12.7
Q ss_pred CeecCHhhhhccc--CCCCccCCCcc
Q psy11345 207 GLPYCENDWNDLF--TTKCFACGFPI 230 (282)
Q Consensus 207 ~~~yC~~c~~~~~--~~~C~~C~~~I 230 (282)
+..||..|..+.+ ...|..|+..|
T Consensus 28 ~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 28 GHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 4556666654422 23566666554
No 120
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=39.29 E-value=30 Score=24.50 Aligned_cols=47 Identities=13% Similarity=0.052 Sum_probs=34.9
Q ss_pred ccCccCCccCcccCCCCeeeeCCeecCHhhhhccc--CCCCccCCCcccc
Q psy11345 185 PECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLF--TTKCFACGFPIEA 232 (282)
Q Consensus 185 ~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~--~~~C~~C~~~I~~ 232 (282)
++-|.|..|...+.+ ......|..||..|..+.+ ...|..|+.++..
T Consensus 27 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccC-CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 567899999887753 4556689999999965543 3578888888764
No 121
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=39.08 E-value=4.7 Score=29.91 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=20.7
Q ss_pred CCCccCCCccccCCcEEEe-------C---CcccccCCCcC
Q psy11345 221 TKCFACGFPIEAGDRWVEA-------L---NNNYHSLCFNC 251 (282)
Q Consensus 221 ~~C~~C~~~I~~~~~~~~~-------~---~~~~H~~Cf~C 251 (282)
..|..|++.|..|+-.+.. . ..+||..||.=
T Consensus 39 A~Ck~C~~kI~KgeLRiG~~v~~~~~~G~~~~WyH~~Cf~~ 79 (116)
T 3od8_A 39 ASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWK 79 (116)
T ss_dssp CBCTTTCCBCCTTSEEEEEEEECSSSSSEEEEEEEHHHHHH
T ss_pred ccCcccCCccCCCCEEEEEEeccCCcCCCCCeeECCccChh
Confidence 5788999999866533311 1 24679999973
No 122
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=39.07 E-value=23 Score=22.52 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=23.0
Q ss_pred cCCccCcccCCCCeeeeCCeecCHhhhhccc--CCCCccCCCccc
Q psy11345 189 TCAYCGKLFGNNPFFLEEGLPYCENDWNDLF--TTKCFACGFPIE 231 (282)
Q Consensus 189 ~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~--~~~C~~C~~~I~ 231 (282)
.|..|...+........=+..||..|..+.+ ...|..|+..+.
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 4556655554322222335667777764422 246777777664
No 123
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=38.02 E-value=33 Score=24.66 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=15.8
Q ss_pred CccccccCccCCccCcccCCCCeeeeCCeecCHhhhh
Q psy11345 180 GKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWN 216 (282)
Q Consensus 180 ~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~ 216 (282)
++.||..|..- +|.. +-.+.-+|..|..
T Consensus 76 ~~~yH~~Cl~p-----pl~~----~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 76 DKGYHTFCLQP-----VMKS----VPTNGWKCKNCRI 103 (111)
T ss_dssp CCEEEGGGSSS-----CCSS----CCSSCCCCHHHHC
T ss_pred CcHHhHHhcCC-----cccc----CCCCCcCCcCCcC
Confidence 57799888653 2221 1234567777743
No 124
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=37.76 E-value=25 Score=23.13 Aligned_cols=25 Identities=8% Similarity=0.200 Sum_probs=12.7
Q ss_pred CeecCHhhhhccc--CCCCccCCCccc
Q psy11345 207 GLPYCENDWNDLF--TTKCFACGFPIE 231 (282)
Q Consensus 207 ~~~yC~~c~~~~~--~~~C~~C~~~I~ 231 (282)
+..||..|..+.+ ...|..|+..|.
T Consensus 37 ~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 37 NHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp SCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred CCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 4445555543322 235666666665
No 125
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.33 E-value=29 Score=22.51 Aligned_cols=38 Identities=16% Similarity=0.411 Sum_probs=25.9
Q ss_pred cCccccccCccCCccCcc-cCCCCeeee--CCeecCHhhhhcc
Q psy11345 179 IGKHYHPECFTCAYCGKL-FGNNPFFLE--EGLPYCENDWNDL 218 (282)
Q Consensus 179 ~~~~~H~~Cf~C~~C~~~-l~~~~f~~~--~~~~yC~~c~~~~ 218 (282)
....+|. ..|..|++. |.+.+|.=. .+--+|..||...
T Consensus 5 ~~~v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 5 SSGVFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp SSSCCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred cCCceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 4567787 889999875 766444322 3556899998764
No 126
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=36.99 E-value=9.3 Score=24.02 Aligned_cols=46 Identities=20% Similarity=0.401 Sum_probs=28.1
Q ss_pred ccCCccCcccCCC-----C-eeeeCCeecCHhhhhccc--CCCCccCCCccccC
Q psy11345 188 FTCAYCGKLFGNN-----P-FFLEEGLPYCENDWNDLF--TTKCFACGFPIEAG 233 (282)
Q Consensus 188 f~C~~C~~~l~~~-----~-f~~~~~~~yC~~c~~~~~--~~~C~~C~~~I~~~ 233 (282)
+.|..|...+... . ....=+..||..|..+.+ ...|..|+.++...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 4566666655321 1 223346778888875543 45899999888743
No 127
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=35.51 E-value=13 Score=22.21 Aligned_cols=14 Identities=14% Similarity=0.565 Sum_probs=11.5
Q ss_pred CCCCcccccCcccc
Q psy11345 109 ARVPLCGQCYQQIR 122 (282)
Q Consensus 109 ~~~~~C~~C~~~I~ 122 (282)
...++|.+||++|.
T Consensus 15 ~~YRvC~~CgkPi~ 28 (44)
T 2lo3_A 15 IQYRVCEKCGKPLA 28 (44)
T ss_dssp CCEEECTTTCCEEE
T ss_pred ccchhhcccCCcch
Confidence 35679999999995
No 128
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.49 E-value=25 Score=23.15 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=27.0
Q ss_pred ccCCccCcccCCCCeeeeCCee-cCHhhhhcccCCCCccCCCccc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLP-YCENDWNDLFTTKCFACGFPIE 231 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~-yC~~c~~~~~~~~C~~C~~~I~ 231 (282)
+.|..|...+..- .+..=+.. +|..|.... .+|..|+.+|.
T Consensus 26 ~~C~IC~~~~~~~-~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~ 67 (75)
T 2ecg_A 26 KLCKICMDRNIAI-VFVPCGHLVTCKQCAEAV--DKCPMCYTVIT 67 (75)
T ss_dssp HSCSSSCSSCCCB-CCSSSCCCCBCHHHHHHC--SBCTTTCCBCC
T ss_pred CCCCcCCCCCCCE-EEecCCCHHHHHHHhhCC--CCCccCCceec
Confidence 3566666555332 22333556 899998654 78999999886
No 129
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=34.77 E-value=30 Score=23.55 Aligned_cols=47 Identities=13% Similarity=0.040 Sum_probs=33.8
Q ss_pred ccCccCCccCcccCCCCeeeeCCeecCHhhhhccc--CCCCccCCCcccc
Q psy11345 185 PECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLF--TTKCFACGFPIEA 232 (282)
Q Consensus 185 ~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~--~~~C~~C~~~I~~ 232 (282)
++-|.|..|...+.. -.....|..||..|..+.+ ...|..|+.++..
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 456889999887753 3555678899999965433 3578888888763
No 130
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=34.61 E-value=18 Score=26.41 Aligned_cols=44 Identities=23% Similarity=0.497 Sum_probs=29.9
Q ss_pred ccCCccCcccCCCCeeeeCCeecCHhhhhccc---CCCCccCCCcccc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWNDLF---TTKCFACGFPIEA 232 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~---~~~C~~C~~~I~~ 232 (282)
+.|..|...+.. .....=|..||..|....+ ...|..|+.++..
T Consensus 53 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFR-PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcC-cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 678888776653 2333457789999976544 2378888888863
No 131
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=34.31 E-value=14 Score=26.07 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=29.2
Q ss_pred ccCCccCcccCCCCee-eeCCeecCHhhhhcccC---CCCccCCCcccc
Q psy11345 188 FTCAYCGKLFGNNPFF-LEEGLPYCENDWNDLFT---TKCFACGFPIEA 232 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~-~~~~~~yC~~c~~~~~~---~~C~~C~~~I~~ 232 (282)
+.|..|...+.. ... ..=|..||..|..+.+. ..|..|+.++..
T Consensus 23 ~~C~IC~~~~~~-p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCFICMEKLRD-ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp TBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCccCCccccC-ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 567888777653 222 33477889999765432 578899888864
No 132
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=34.00 E-value=40 Score=24.36 Aligned_cols=62 Identities=21% Similarity=0.569 Sum_probs=35.8
Q ss_pred CCCCCcccccCcccc----Cc---ee-ecCCccc-CcCCcccccCCCCCCCCCCCceecCCccccccccccccCCceeee
Q psy11345 108 GARVPLCGQCYQQIR----GP---FI-TALGKIW-CPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPDCLNA 178 (282)
Q Consensus 108 ~~~~~~C~~C~~~I~----~~---~v-~~~~~~~-H~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~~~~ 178 (282)
...+..|..|+.... +. .. .+....| -++|-.|. .|+..-.+ .+..+.|..|
T Consensus 23 ~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~--vC~~~~~~-----~~~ll~Cd~C------------ 83 (112)
T 3v43_A 23 PEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCS--SCRDQGKN-----ADNMLFCDSC------------ 83 (112)
T ss_dssp CCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBT--TTCCCCCT-----TCCCEECTTT------------
T ss_pred chhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCccc--cccCcCCC-----ccceEEcCCC------------
Confidence 346778999998762 21 11 1223344 46777777 77754211 1235567766
Q ss_pred cCccccccCcc
Q psy11345 179 IGKHYHPECFT 189 (282)
Q Consensus 179 ~~~~~H~~Cf~ 189 (282)
++.||..|..
T Consensus 84 -~~~yH~~Cl~ 93 (112)
T 3v43_A 84 -DRGFHMECCD 93 (112)
T ss_dssp -CCEECGGGCS
T ss_pred -CCeeecccCC
Confidence 5678888753
No 133
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=33.56 E-value=21 Score=21.58 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=20.4
Q ss_pred ccCCccCcccCCC--Cee-eeCCeecCHhhhhccc--CCCCccCCCcc
Q psy11345 188 FTCAYCGKLFGNN--PFF-LEEGLPYCENDWNDLF--TTKCFACGFPI 230 (282)
Q Consensus 188 f~C~~C~~~l~~~--~f~-~~~~~~yC~~c~~~~~--~~~C~~C~~~I 230 (282)
+.|.+|...+... ... ..=+..||..|..+.+ ...|..|+..|
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 3455565555321 111 1224556666654432 24566666555
No 134
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=33.35 E-value=26 Score=24.06 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=27.3
Q ss_pred CCcccccCccccC-ceeecCCcccCcCCcccc
Q psy11345 111 VPLCGQCYQQIRG-PFITALGKIWCPDHFLCV 141 (282)
Q Consensus 111 ~~~C~~C~~~I~~-~~v~~~~~~~H~~Cf~C~ 141 (282)
...|.-|...+.+ -||..-....|.=||-|+
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCs 46 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCS 46 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCeeecccc
Confidence 3589999999987 589988899999999997
No 135
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=33.33 E-value=33 Score=24.15 Aligned_cols=47 Identities=11% Similarity=0.055 Sum_probs=33.8
Q ss_pred ccCccCCccCcccCCCCeeeeCC-eecCHhhhhccc--CCCCccCCCcccc
Q psy11345 185 PECFTCAYCGKLFGNNPFFLEEG-LPYCENDWNDLF--TTKCFACGFPIEA 232 (282)
Q Consensus 185 ~~Cf~C~~C~~~l~~~~f~~~~~-~~yC~~c~~~~~--~~~C~~C~~~I~~ 232 (282)
++-|.|..|...+.+ -.....| ..||..|..+.+ ...|..|++++..
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccC-CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 456889999887753 3555667 899999965544 3578888888764
No 136
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=33.10 E-value=7.7 Score=28.50 Aligned_cols=30 Identities=30% Similarity=0.604 Sum_probs=20.3
Q ss_pred CCCccCCCccccCCcEEEe------------CCcccccCCCc
Q psy11345 221 TKCFACGFPIEAGDRWVEA------------LNNNYHSLCFN 250 (282)
Q Consensus 221 ~~C~~C~~~I~~~~~~~~~------------~~~~~H~~Cf~ 250 (282)
..|..|+..|.-|+-.+.. ...+||..||.
T Consensus 20 a~Ck~C~~kI~Kg~lRig~~~~~~~~~~~G~~~~W~H~~Cf~ 61 (111)
T 3odc_A 20 STCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV 61 (111)
T ss_dssp CBCTTTCCBCCTTCEEEEEEEEETTEEEEEEEEEEECHHHHH
T ss_pred ccccccCCCccCCceEEeEEecCccccCCCCcceeEChhhcc
Confidence 5788999999866533211 12468999997
No 137
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=32.53 E-value=26 Score=27.12 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=23.5
Q ss_pred ccCCccCcccCCCCeeeeCCeecCHhhhhccc---CCCCccCCCccc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWNDLF---TTKCFACGFPIE 231 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~---~~~C~~C~~~I~ 231 (282)
|.|.+|...+.. .....-|..||..|..+.+ ..+|..|+.+|.
T Consensus 19 ~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 19 YECPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp GBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCChhhcC-cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 456666555543 2333445666777765543 236666666665
No 138
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=32.28 E-value=68 Score=21.98 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=16.6
Q ss_pred CCccCCCccccCCcEEEeCCcccccCCCcCCCCCCCC
Q psy11345 222 KCFACGFPIEAGDRWVEALNNNYHSLCFNCSSPSSPA 258 (282)
Q Consensus 222 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l 258 (282)
.|..|++++. ++.+-|.. =|.|..|+..+
T Consensus 33 fCPeCgq~Le----~lkACGA~----~yFC~~C~~Li 61 (81)
T 2jrp_A 33 LCPDCRQPLQ----VLKACGAV----DYFCQNGHGLI 61 (81)
T ss_dssp ECSSSCSCCC----EEEETTEE----EECCTTTTCCC
T ss_pred cCcchhhHHH----HHHhcCCc----CeeeccCCCEe
Confidence 5777777764 34444432 34477777774
No 139
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=31.99 E-value=29 Score=24.87 Aligned_cols=44 Identities=16% Similarity=0.443 Sum_probs=31.3
Q ss_pred ccCCccCcccCCCCeeeeCCeecCHhhhhccc---CCCCccCCCcccc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWNDLF---TTKCFACGFPIEA 232 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~---~~~C~~C~~~I~~ 232 (282)
+.|..|...+.. .....=|..||..|..+.+ ...|..|+.++..
T Consensus 24 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 24 ISCQICEHILAD-PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp TBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCcHhcC-cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 678888777643 2334557889999976544 3579999998874
No 140
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=31.60 E-value=21 Score=24.43 Aligned_cols=44 Identities=16% Similarity=0.421 Sum_probs=29.7
Q ss_pred CccCCccCcccCCCCeeee-CCeecCHhhhhccc----CCCCccCCCccc
Q psy11345 187 CFTCAYCGKLFGNNPFFLE-EGLPYCENDWNDLF----TTKCFACGFPIE 231 (282)
Q Consensus 187 Cf~C~~C~~~l~~~~f~~~-~~~~yC~~c~~~~~----~~~C~~C~~~I~ 231 (282)
-|.|..|...+.. ..... =|..||..|..+.+ ...|..|+..+.
T Consensus 13 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 13 ELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTEETTTTEECSS-CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCCChhhcC-ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3677788776653 33444 27889999976654 247888888863
No 141
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.25 E-value=8.4 Score=29.32 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=20.1
Q ss_pred CCCccCCCccccCCcEEEe---C------C---cccccCCCc
Q psy11345 221 TKCFACGFPIEAGDRWVEA---L------N---NNYHSLCFN 250 (282)
Q Consensus 221 ~~C~~C~~~I~~~~~~~~~---~------~---~~~H~~Cf~ 250 (282)
..|..|+..|.-|+-.|.. . + .+||..||.
T Consensus 28 A~CK~C~~kI~KgeLRIG~~v~~~~~~~~G~~~~W~H~~Cf~ 69 (134)
T 2cs2_A 28 STCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV 69 (134)
T ss_dssp CBCSSSCCBCCTTSEEEEEEEECSSCTTTCEEEEEECHHHHH
T ss_pred ccchhcCCcccCCCeEEEEEecccccCCCCCcceeECcCcCh
Confidence 5799999999876632211 1 2 367899997
No 142
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=31.23 E-value=22 Score=27.20 Aligned_cols=44 Identities=25% Similarity=0.467 Sum_probs=29.0
Q ss_pred ccCCccCcccCCCCeeeeCCeecCHhhhhcccC---CCCccCCCcccc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFT---TKCFACGFPIEA 232 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~---~~C~~C~~~I~~ 232 (282)
+.|..|...+.. .....=+..||..|..+.+. ..|..|+.++..
T Consensus 79 ~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVYQ-PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CEeecCChhhcC-CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 567777766643 23344567889999765542 368888888763
No 143
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=30.65 E-value=23 Score=25.53 Aligned_cols=34 Identities=18% Similarity=0.516 Sum_probs=19.3
Q ss_pred ccCCccCcccCCCCeeeeCCeecCH-hhhhcccCCCCccCC
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLPYCE-NDWNDLFTTKCFACG 227 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~yC~-~c~~~~~~~~C~~C~ 227 (282)
+.|..|+++..... .-+.|. .| .+-|...|.+=.
T Consensus 4 ~~C~iC~~p~~~~~-----~mi~Cdd~C-~~WfH~~CVglt 38 (105)
T 2xb1_A 4 YPCGACRSEVNDDQ-----DAILCEASC-QKWFHRECTGMT 38 (105)
T ss_dssp CBCTTTCSBCCTTS-----CEEECTTTT-CCEEEGGGTTCC
T ss_pred CCCCCCCCccCCCC-----CEEEecCCc-ccccccccCCcC
Confidence 45777877754322 235565 66 355666776533
No 144
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=29.62 E-value=25 Score=25.49 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=29.3
Q ss_pred ccCCccCcccCCCCeeeeCCeecCHhhhhcccC---CCCccCCCcccc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFT---TKCFACGFPIEA 232 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~---~~C~~C~~~I~~ 232 (282)
+.|..|...+.. .....=|..||..|..+.+. ..|..|+.++..
T Consensus 19 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 19 YECPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCcCChhhcC-eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 567777766643 23334577888888765432 389999888874
No 145
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.17 E-value=7.4 Score=27.61 Aligned_cols=13 Identities=8% Similarity=0.036 Sum_probs=9.4
Q ss_pred CCCcCCCCCCCCC
Q psy11345 247 LCFNCSSPSSPAL 259 (282)
Q Consensus 247 ~Cf~C~~C~~~l~ 259 (282)
.=|.|..|++.|.
T Consensus 79 ~~~~C~~C~k~f~ 91 (115)
T 2dmi_A 79 KVLKCMYCGHSFE 91 (115)
T ss_dssp SSCBCSSSCCBCS
T ss_pred cceECCCCCCccC
Confidence 3478888888854
No 146
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=28.73 E-value=48 Score=20.20 Aligned_cols=31 Identities=29% Similarity=0.689 Sum_probs=19.8
Q ss_pred ccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCccCCCccc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFACGFPIE 231 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~~C~~~I~ 231 (282)
++|-.|++.++..+- ..+-+-+|..|+..|.
T Consensus 4 Y~C~rCg~~fs~~el-------------~~lP~IrCpyCGyrii 34 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQL-------------KVLPGVRCPYCGYKII 34 (48)
T ss_dssp -CCCCTTTTCCCCCS-------------CCCSSSCCTTTCCSCE
T ss_pred EEeeccCCCccHHHH-------------hhCCCcccCccCcEEE
Confidence 578888887765432 1223458888888775
No 147
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=28.60 E-value=34 Score=21.75 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=26.2
Q ss_pred cCCccCcccCCCCeee-eCCee-cCHhhhhccc--CCCCccCCCccc
Q psy11345 189 TCAYCGKLFGNNPFFL-EEGLP-YCENDWNDLF--TTKCFACGFPIE 231 (282)
Q Consensus 189 ~C~~C~~~l~~~~f~~-~~~~~-yC~~c~~~~~--~~~C~~C~~~I~ 231 (282)
.|..|-....+..+.. .=|.. +|..|..++. ..+|..|+++|.
T Consensus 9 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 9 PCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp BCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3555655443322221 22455 8999987654 248999999996
No 148
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=28.48 E-value=72 Score=23.01 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=20.0
Q ss_pred CccccccCccCCccCcccCCCCeeeeCCeecCHhhhhcccCCCCccCCCcc
Q psy11345 180 GKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFACGFPI 230 (282)
Q Consensus 180 ~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~~~~C~~C~~~I 230 (282)
.+.||..|.. |.. +-.|.-||..| .|..|++..
T Consensus 36 p~~fH~~Cl~-------L~~----~P~g~W~Cp~c-------~C~~C~k~~ 68 (107)
T 4gne_A 36 PKAYHLLCLN-------LTQ----PPYGKWECPWH-------QCDECSSAA 68 (107)
T ss_dssp CCEECTGGGT-------CSS----CCSSCCCCGGG-------BCTTTCSBC
T ss_pred CcccccccCc-------CCc----CCCCCEECCCC-------CCCcCCCCC
Confidence 3578887764 221 22355678777 477777664
No 149
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=27.61 E-value=50 Score=23.91 Aligned_cols=79 Identities=22% Similarity=0.432 Sum_probs=44.1
Q ss_pred CCCCCcccccCcccc----Cce---e-ecCCcccC-cCCcccccCCCCCCCCCCCceecCCccccccccccccCCceeee
Q psy11345 108 GARVPLCGQCYQQIR----GPF---I-TALGKIWC-PDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPDCLNA 178 (282)
Q Consensus 108 ~~~~~~C~~C~~~I~----~~~---v-~~~~~~~H-~~Cf~C~~~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~~~~ 178 (282)
...+..|..|+.... +.- + .+....|. ++|-.|. .|+..... +..+.|..|
T Consensus 20 ~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~--~C~~~~~~------~~ll~Cd~C------------ 79 (114)
T 2kwj_A 20 PEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCI--LCGTSEND------DQLLFCDDC------------ 79 (114)
T ss_dssp CCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCT--TTTCCTTT------TTEEECSSS------------
T ss_pred CCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccCccC--cccccCCC------CceEEcCCC------------
Confidence 346678888887752 211 1 12223443 5666666 77765322 345667766
Q ss_pred cCccccccCccCCccCcccCCCCeeeeCCeecCHhhhh
Q psy11345 179 IGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWN 216 (282)
Q Consensus 179 ~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~ 216 (282)
++.||..|..= +|.. +-.+.-+|..|..
T Consensus 80 -~~~yH~~Cl~p-----pl~~----~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 80 -DRGYHMYCLNP-----PVAE----PPEGSWSCHLCWE 107 (114)
T ss_dssp -CCEEETTTSSS-----CCSS----CCSSCCCCHHHHH
T ss_pred -CccccccccCC-----CccC----CCCCCeECccccc
Confidence 57799988652 2321 2234567887754
No 150
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.29 E-value=41 Score=22.74 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=20.4
Q ss_pred CCccCCCccccCCcEEEeC-----CcccccCCC----------cCCCCCCCC
Q psy11345 222 KCFACGFPIEAGDRWVEAL-----NNNYHSLCF----------NCSSPSSPA 258 (282)
Q Consensus 222 ~C~~C~~~I~~~~~~~~~~-----~~~~H~~Cf----------~C~~C~~~l 258 (282)
.|..|......++.++..- .+.||..|. .|..|...+
T Consensus 17 ~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~ 68 (80)
T 2d8s_A 17 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68 (80)
T ss_dssp CCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred CCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence 4555554443333333222 266777765 588888774
No 151
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.09 E-value=65 Score=20.67 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=24.4
Q ss_pred cCCccCcccCCCC-ee-eeCCeecCHhhhhccc--CCCCccCCCccc
Q psy11345 189 TCAYCGKLFGNNP-FF-LEEGLPYCENDWNDLF--TTKCFACGFPIE 231 (282)
Q Consensus 189 ~C~~C~~~l~~~~-f~-~~~~~~yC~~c~~~~~--~~~C~~C~~~I~ 231 (282)
.|.+|-..+.... .. +.=+..||..|..+.+ ...|..|+.+|.
T Consensus 17 ~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 17 LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp BCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 4555655554332 11 1236677777765432 357888888776
No 152
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=25.99 E-value=55 Score=20.73 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=23.6
Q ss_pred ccCCccCcccCCCC-e-eeeCCeecCHhhhhccc--CCCCccCCCccc
Q psy11345 188 FTCAYCGKLFGNNP-F-FLEEGLPYCENDWNDLF--TTKCFACGFPIE 231 (282)
Q Consensus 188 f~C~~C~~~l~~~~-f-~~~~~~~yC~~c~~~~~--~~~C~~C~~~I~ 231 (282)
..|.+|-..+.... . ...=+..||..|..+.+ ...|..|+..|.
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 34555555553322 1 12235567777765432 356888877775
No 153
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.91 E-value=52 Score=19.85 Aligned_cols=30 Identities=17% Similarity=0.448 Sum_probs=17.9
Q ss_pred ccCCccCcccCCCCeeeeCCeecCHhhhhcc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWNDL 218 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~ 218 (282)
+.|..|...+... ....=+..||..|..+.
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 16 ASCSVCLEYLKEP-VIIECGHNFCKACITRW 45 (58)
T ss_dssp CBCSSSCCBCSSC-CCCSSCCCCCHHHHHHH
T ss_pred CCCccCCcccCcc-EeCCCCCccCHHHHHHH
Confidence 4566676665432 22334667888887665
No 154
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=25.01 E-value=44 Score=23.81 Aligned_cols=45 Identities=18% Similarity=0.487 Sum_probs=21.9
Q ss_pred ccCCccCcccCCCCeeeeCCeecCHhhhhcc-cCCCCccCCCccccCCcEEEeCC
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWNDL-FTTKCFACGFPIEAGDRWVEALN 241 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~-~~~~C~~C~~~I~~~~~~~~~~~ 241 (282)
..|-.|+..|. ..++..+|..|.... ....|..|++++. ++.+-|
T Consensus 33 ~~CP~Cq~eL~-----~~g~~~hC~~C~~~f~~~a~CPdC~q~Le----vLkACG 78 (101)
T 2jne_A 33 LHCPQCQHVLD-----QDNGHARCRSCGEFIEMKALCPDCHQPLQ----VLKACG 78 (101)
T ss_dssp CBCSSSCSBEE-----EETTEEEETTTCCEEEEEEECTTTCSBCE----EEEETT
T ss_pred ccCccCCCcce-----ecCCEEECccccchhhccccCcchhhHHH----HHHHhc
Confidence 34555555542 123334455553221 1146777777775 555554
No 155
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=24.93 E-value=26 Score=33.83 Aligned_cols=77 Identities=18% Similarity=0.480 Sum_probs=57.0
Q ss_pred CCCcccccCccccCceeecCCcccCcCCcccccCCCCCCCCC-------CCceecCCccccccccccccCCceeeecCcc
Q psy11345 110 RVPLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQD-------IGFVEEDSGLYCEFCFEQYLAPDCLNAIGKH 182 (282)
Q Consensus 110 ~~~~C~~C~~~I~~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~-------~~~~~~~~~~yC~~c~~~~~~~~~~~~~~~~ 182 (282)
...+|..|-++|.++ .++.|+=--..|. .|+-.++- .....+...+.|+.|..+..++ .++.
T Consensus 16 D~a~C~~Cl~e~~dp----~~Rry~YpF~nCt--~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp-----~dRR 84 (657)
T 3ttc_A 16 DAATCPACLAEMNTP----GERRYRYPFINCT--HCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDP-----LDRR 84 (657)
T ss_dssp CBCCCHHHHHHHTST----TSTTTTCTTCCBT--TBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCT-----TSTT
T ss_pred chhhhHHHHHHhcCC----CCcccCCccccCc--CCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCC-----CCCc
Confidence 456999999998763 3555665566777 88866532 2234456678899998876655 5899
Q ss_pred ccccCccCCccCccc
Q psy11345 183 YHPECFTCAYCGKLF 197 (282)
Q Consensus 183 ~H~~Cf~C~~C~~~l 197 (282)
||..=-.|..|+=+|
T Consensus 85 fHAqp~aCp~CGP~l 99 (657)
T 3ttc_A 85 FHAQPVACPECGPYL 99 (657)
T ss_dssp TTCTTCCCTTTSCCE
T ss_pred CcCCCCcCcccCccc
Confidence 999999999999876
No 156
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=24.90 E-value=15 Score=30.39 Aligned_cols=31 Identities=29% Similarity=0.554 Sum_probs=0.0
Q ss_pred CCCccCCCccccCCcEEEe------------CCcccccCCCcC
Q psy11345 221 TKCFACGFPIEAGDRWVEA------------LNNNYHSLCFNC 251 (282)
Q Consensus 221 ~~C~~C~~~I~~~~~~~~~------------~~~~~H~~Cf~C 251 (282)
..|..|+..|.-|+-.|.. ...+||..||.=
T Consensus 144 a~Ck~C~~kI~KgeLRig~~v~~~~~~~~G~~~~W~H~~Cf~~ 186 (223)
T 4av1_A 144 STCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVK 186 (223)
T ss_dssp -------------------------------------------
T ss_pred ccccccCCccCCCCeEEeeeecCcccccCCCcceeEChhhhhc
Confidence 5788999999865522211 134689999974
No 157
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=24.37 E-value=29 Score=34.20 Aligned_cols=78 Identities=22% Similarity=0.602 Sum_probs=56.8
Q ss_pred CCCCcccccCccccCceeecCCcccCcCCcccccCCCCCCCCC-------CCceecCCccccccccccccCCceeeecCc
Q psy11345 109 ARVPLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQD-------IGFVEEDSGLYCEFCFEQYLAPDCLNAIGK 181 (282)
Q Consensus 109 ~~~~~C~~C~~~I~~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~-------~~~~~~~~~~yC~~c~~~~~~~~~~~~~~~ 181 (282)
....+|..|-+++.++ .++.|+=--..|. .|+-.++- .....+..-+.|+.|..+..++ .++
T Consensus 104 pD~a~C~~Cl~e~~dp----~~rry~ypF~nCt--~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp-----~dR 172 (772)
T 4g9i_A 104 PDIAICDDCLRELFDP----TNKRYMYPFIVCT--NCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDP-----LNR 172 (772)
T ss_dssp CCCCCCHHHHHHHSST----TSTTTTCTTCCCT--TSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCS-----SST
T ss_pred CchhhhHHHHHHhcCC----CCCccCCccccCC--CCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCC-----CCC
Confidence 3556999999998763 3455555556677 88866532 2233456678899998876554 689
Q ss_pred cccccCccCCccCccc
Q psy11345 182 HYHPECFTCAYCGKLF 197 (282)
Q Consensus 182 ~~H~~Cf~C~~C~~~l 197 (282)
.||..=-.|..|+=+|
T Consensus 173 RfhAqp~aC~~CGP~l 188 (772)
T 4g9i_A 173 RYHAEPTACPVCGPSY 188 (772)
T ss_dssp TTTCTTCCCTTTSCCE
T ss_pred CCcCCCCCCccCCceE
Confidence 9999999999999876
No 158
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=24.28 E-value=31 Score=33.95 Aligned_cols=78 Identities=18% Similarity=0.476 Sum_probs=57.6
Q ss_pred CCCCcccccCccccCceeecCCcccCcCCcccccCCCCCCCCC-------CCceecCCccccccccccccCCceeeecCc
Q psy11345 109 ARVPLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQD-------IGFVEEDSGLYCEFCFEQYLAPDCLNAIGK 181 (282)
Q Consensus 109 ~~~~~C~~C~~~I~~~~v~~~~~~~H~~Cf~C~~~~C~~~l~~-------~~~~~~~~~~yC~~c~~~~~~~~~~~~~~~ 181 (282)
....+|..|-++|.++ .++.|+=--..|. .|+-.++- .....+...+.|+.|..+..++ .++
T Consensus 109 pD~a~C~~Cl~e~~dp----~~Rry~ypF~nCt--~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp-----~~R 177 (761)
T 3vth_A 109 PDMGVCEDCLRELKDP----KDRRYRYPFINCT--NCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDP-----HDR 177 (761)
T ss_dssp CCBCCCHHHHHHHTCT----TSTTTTCTTCCBT--TBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCT-----TST
T ss_pred CCccccHHHHHHhcCC----CccccCCCcccCC--CCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCc-----ccc
Confidence 3557999999998763 3555665666777 88865532 2234556678899998886655 589
Q ss_pred cccccCccCCccCccc
Q psy11345 182 HYHPECFTCAYCGKLF 197 (282)
Q Consensus 182 ~~H~~Cf~C~~C~~~l 197 (282)
.||..=-.|..|+=.|
T Consensus 178 RfhAqp~aC~~CGP~l 193 (761)
T 3vth_A 178 RFHAQPVACFDCGPSL 193 (761)
T ss_dssp TTTCTTCCCTTTSCCE
T ss_pred cccCCCCcCCccCCee
Confidence 9999999999999876
No 159
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=24.20 E-value=46 Score=27.57 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=33.9
Q ss_pred ccCccCCccCcccCCCCeeeeCCeecCHhhhhccc---CCCCccCCCcccc
Q psy11345 185 PECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLF---TTKCFACGFPIEA 232 (282)
Q Consensus 185 ~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~---~~~C~~C~~~I~~ 232 (282)
+.-|.|..|...+.. ......|..||..|..+.+ ...|..|+.++..
T Consensus 206 ~~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 456889999887753 3555678999999965433 2349999998864
No 160
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.12 E-value=34 Score=22.92 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=7.6
Q ss_pred CCCccCCCccc
Q psy11345 221 TKCFACGFPIE 231 (282)
Q Consensus 221 ~~C~~C~~~I~ 231 (282)
..|..|+..+.
T Consensus 53 ~~CP~Cr~~w~ 63 (74)
T 2ct0_A 53 PRCPHCNDYWP 63 (74)
T ss_dssp CCCTTTCSCCC
T ss_pred CCCCCCcCcCC
Confidence 45777877665
No 161
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.31 E-value=39 Score=21.27 Aligned_cols=29 Identities=17% Similarity=0.423 Sum_probs=18.7
Q ss_pred CCCcccccCccccCc-------eeecCCcccCcCCc
Q psy11345 110 RVPLCGQCYQQIRGP-------FITALGKIWCPDHF 138 (282)
Q Consensus 110 ~~~~C~~C~~~I~~~-------~v~~~~~~~H~~Cf 138 (282)
....|.-|...+... ++..-+..||..|+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci 49 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCL 49 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHH
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHH
Confidence 345899999887532 33344667777775
No 162
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.09 E-value=55 Score=22.02 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=14.4
Q ss_pred CCccCCCccccCCcEEE--eCCcccccCCCc
Q psy11345 222 KCFACGFPIEAGDRWVE--ALNNNYHSLCFN 250 (282)
Q Consensus 222 ~C~~C~~~I~~~~~~~~--~~~~~~H~~Cf~ 250 (282)
.|..|++.-..+ .+|. .-.+.||..|..
T Consensus 28 ~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~ 57 (77)
T 2e6s_A 28 SCRVCGGKHEPN-MQLLCDECNVAYHIYCLN 57 (77)
T ss_dssp SCSSSCCCCCST-TEEECSSSCCEEETTSSS
T ss_pred CCcCcCCcCCCC-CEEEcCCCCccccccccC
Confidence 456666544322 2332 234667777765
No 163
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=21.77 E-value=56 Score=21.82 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=27.5
Q ss_pred cCCccCcccCCCCeeeeCCee-cCHhhhhcccCCCCccCCCccc
Q psy11345 189 TCAYCGKLFGNNPFFLEEGLP-YCENDWNDLFTTKCFACGFPIE 231 (282)
Q Consensus 189 ~C~~C~~~l~~~~f~~~~~~~-yC~~c~~~~~~~~C~~C~~~I~ 231 (282)
.|..|-..+.. ..++.=|.. +|..|.... ..|..|+.+|.
T Consensus 20 ~C~IC~~~~~~-~v~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~ 60 (79)
T 2yho_A 20 LCMVCCEEEIN-STFCPCGHTVCCESCAAQL--QSCPVCRSRVE 60 (79)
T ss_dssp BCTTTSSSBCC-EEEETTCBCCBCHHHHTTC--SBCTTTCCBCC
T ss_pred EeEEeCcccCc-EEEECCCCHHHHHHHHHhc--CcCCCCCchhh
Confidence 56677555543 223334566 899998765 49999999997
No 164
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=21.73 E-value=63 Score=22.01 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=22.5
Q ss_pred cCCccCcccCCCC-ee-eeCCeecCHhhhhccc--CCCCccCCCccc
Q psy11345 189 TCAYCGKLFGNNP-FF-LEEGLPYCENDWNDLF--TTKCFACGFPIE 231 (282)
Q Consensus 189 ~C~~C~~~l~~~~-f~-~~~~~~yC~~c~~~~~--~~~C~~C~~~I~ 231 (282)
.|.+|-..+.... .. +.=+..||..|..+.+ ...|..|+..|.
T Consensus 42 ~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 42 CCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp EETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 4555554443322 11 2235567777754432 246888877765
No 165
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=21.57 E-value=22 Score=23.44 Aligned_cols=14 Identities=21% Similarity=0.513 Sum_probs=10.7
Q ss_pred CCeecCHhhhhccc
Q psy11345 206 EGLPYCENDWNDLF 219 (282)
Q Consensus 206 ~~~~yC~~c~~~~~ 219 (282)
++.+||..||.+.-
T Consensus 26 dgDLYC~rC~rE~H 39 (67)
T 2d8v_A 26 DGDLYCARCFREGH 39 (67)
T ss_dssp TSEEECSSHHHHHT
T ss_pred CCceehHHHHHHHc
Confidence 55689999987753
No 166
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.43 E-value=64 Score=20.85 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=13.8
Q ss_pred CeecCHhhhhcc--cCCCCccCCCccc
Q psy11345 207 GLPYCENDWNDL--FTTKCFACGFPIE 231 (282)
Q Consensus 207 ~~~yC~~c~~~~--~~~~C~~C~~~I~ 231 (282)
+..||..|..+. ....|..|+..|.
T Consensus 45 ~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 45 NHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp TEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 455565564332 2346777776665
No 167
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=20.96 E-value=73 Score=20.48 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=6.4
Q ss_pred CCCCCCCCCCCCc
Q psy11345 251 CSSPSSPALSGAK 263 (282)
Q Consensus 251 C~~C~~~l~~g~~ 263 (282)
|+.|.++|..|+.
T Consensus 23 C~~CKk~lqKGQt 35 (62)
T 2das_A 23 CANCKKPLQKGQT 35 (62)
T ss_dssp CTTTCCBCCTTSC
T ss_pred hhhccchhhcCce
Confidence 4555555554443
No 168
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=20.13 E-value=69 Score=25.39 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=34.2
Q ss_pred ccCccCCccCcccCCCCeeeeCCeecCHhhhhccc---CCCCccCCCcccc
Q psy11345 185 PECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLF---TTKCFACGFPIEA 232 (282)
Q Consensus 185 ~~Cf~C~~C~~~l~~~~f~~~~~~~yC~~c~~~~~---~~~C~~C~~~I~~ 232 (282)
++-|.|..|...+.. ......|..||..|....+ +..|..|+.++..
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 456888998887753 4566789999999965433 3459999988864
No 169
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.06 E-value=57 Score=21.09 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=25.2
Q ss_pred ccCCccCcccCCCCeeeeCCee-cCHhhhhcccCCCCccCCCccc
Q psy11345 188 FTCAYCGKLFGNNPFFLEEGLP-YCENDWNDLFTTKCFACGFPIE 231 (282)
Q Consensus 188 f~C~~C~~~l~~~~f~~~~~~~-yC~~c~~~~~~~~C~~C~~~I~ 231 (282)
..|..|-..... ..++-=+.. +|..|...+ .+|..|+.+|.
T Consensus 16 ~~C~IC~~~~~~-~v~~pCgH~~~C~~C~~~~--~~CP~CR~~i~ 57 (68)
T 2ea5_A 16 KDCVVCQNGTVN-WVLLPCRHTCLCDGCVKYF--QQCPMCRQFVQ 57 (68)
T ss_dssp SCCSSSSSSCCC-CEETTTTBCCSCTTHHHHC--SSCTTTCCCCC
T ss_pred CCCCCcCcCCCC-EEEECCCChhhhHHHHhcC--CCCCCCCcchh
Confidence 345555444332 122223445 888898753 78999999997
Done!