RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11345
(282 letters)
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 129 bits (327), Expect = 1e-37
Identities = 35/171 (20%), Positives = 54/171 (31%), Gaps = 21/171 (12%)
Query: 106 APGARVPLCGQCYQQIRGPFI-TALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCE 164
+P+C C Q I FI AL + W C C PL + F +S +YC+
Sbjct: 1 GSTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCS--DCHVPLAERCFSRGES-VYCK 57
Query: 165 FCFEQYLAPDC-------------LNAIGKHYHPECFTCAYCGKLF--GNNPFFLEEGLP 209
F + C A YH CF C C + G+ + +E+
Sbjct: 58 DDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRL 117
Query: 210 YCENDWNDLFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSSPSSPALS 260
C+ D+ G G + A + H + +
Sbjct: 118 VCKADYETAKQGGSGGSGGSG--GGTPMVAASPERHDGGLQANPVEVQSYQ 166
Score = 99.5 bits (248), Expect = 5e-26
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 1/107 (0%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTK 222
C C + L L A+ +H+H +C C+ C F YC++D+ F TK
Sbjct: 9 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAER-CFSRGESVYCKDDFFKRFGTK 67
Query: 223 CFACGFPIEAGDRWVEALNNNYHSLCFNCSSPSSPALSGAKPYGTQN 269
C AC I A + YH CF C +G + Y ++
Sbjct: 68 CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMED 114
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 116 bits (291), Expect = 4e-32
Identities = 31/130 (23%), Positives = 43/130 (33%), Gaps = 13/130 (10%)
Query: 136 DHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAPDC------------LNAIGKHY 183
D L R + + G +E P C L A+ +H+
Sbjct: 24 DERLITRLENTQFDAANGIDDEGGSGGHMGSGGTPEIPMCAGCDQHILDRFILKALDRHW 83
Query: 184 HPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFACGFPIEAGDRWVEALNNN 243
H +C C+ C F YC++D+ F TKC AC I A +
Sbjct: 84 HSKCLKCSDCHVPLAER-CFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFV 142
Query: 244 YHSLCFNCSS 253
YH CF C
Sbjct: 143 YHLHCFACVV 152
Score = 51.8 bits (124), Expect = 2e-08
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 112 PLCGQCYQQIR--GPFITALGKIWCPDHFLCVRPQCKRPLQ--DIGFVEEDSGLYCEFCF 167
C C I A ++ F CV CKR L D ++ EDS L C+ +
Sbjct: 120 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACV--VCKRQLATGDEFYLMEDSRLVCKADY 177
Query: 168 EQ 169
E
Sbjct: 178 ET 179
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 111 bits (279), Expect = 2e-31
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Query: 163 CEFCFEQYLAPD-CLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTT 221
C C + A ++ + +H CF CA C N F ++ C +
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSP 67
Query: 222 KCFACGFPIEAGDRWVEALNNNYHSLCFNCSS 253
KC C I AGD+ VE +H CF+ S
Sbjct: 68 KCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPS 99
Score = 80.9 bits (200), Expect = 1e-19
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 17/98 (17%)
Query: 112 PLCGQCYQQIRG--PFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQ 169
C +C + I + + W F C +C PL + FV +D+ + C C +
Sbjct: 6 SGCVECRKPIGADSKEVHYKNRFWHDTCFRCA--KCLHPLANETFVAKDNKILCNKCTTR 63
Query: 170 YLAPDC-------------LNAIGKHYHPECFTCAYCG 194
+P C + G +H +CF+ G
Sbjct: 64 EDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101
Score = 38.5 bits (90), Expect = 3e-04
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 219 FTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCS 252
++ C C PI A + V N +H CF C+
Sbjct: 4 GSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCA 37
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 109 bits (273), Expect = 4e-30
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTK 222
C C E + + A +++H + F C C + + + P C+ +
Sbjct: 6 CAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVV 65
Query: 223 CFACGFPIEAGDRWVEALNNNYH--SLCFNCSS 253
C C I+ + V N ++H + CF CS
Sbjct: 66 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSC 98
Score = 98.6 bits (246), Expect = 4e-26
Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 18/122 (14%)
Query: 109 ARVPLCGQCYQQIRGPFIT-ALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCF 167
+ P C C + I T A + W HF C C L +V + C+ C+
Sbjct: 1 SEKPRCAGCDELIFSNEYTQAENQNWHLKHFCCF--DCDSILAGEIYVMVNDKPVCKPCY 58
Query: 168 EQYLAPDC-------------LNAIGKHYHP--ECFTCAYCGKLFGNNPFFLEEGLPYCE 212
+ A C + +H ECF C+ C K F EG+ +C
Sbjct: 59 VKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCS 118
Query: 213 ND 214
+
Sbjct: 119 VE 120
Score = 47.8 bits (114), Expect = 3e-07
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 112 PLCGQCYQQIRG--PFITALGKIW--CPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCF 167
+C C+ I +T W + FLC C + L F+ + ++C
Sbjct: 64 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSC--CSKCLIGQKFMPVEGMVFCSVEC 121
Query: 168 EQYLA 172
++ ++
Sbjct: 122 KKRMS 126
Score = 33.1 bits (76), Expect = 0.034
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 222 KCFACGFPIEAGDRWVEALNNNYHSLCFNCS 252
+C C I + + +A N N+H F C
Sbjct: 5 RCAGCDELIF-SNEYTQAENQNWHLKHFCCF 34
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 100 bits (250), Expect = 1e-26
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGN--NPFFLEEGLPYCENDWNDLFT 220
C C + L AI +++H +C +C CG G + + G C D+ LF
Sbjct: 5 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 64
Query: 221 TK--CFACGFPIEAGDRWVEALNNNYHSLCFNCSS 253
C +C I A + + + YH CF C++
Sbjct: 65 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAA 99
Score = 90.6 bits (225), Expect = 5e-23
Identities = 29/131 (22%), Positives = 42/131 (32%), Gaps = 21/131 (16%)
Query: 111 VPLCGQCYQQIRGPFI-TALGKIWCPDHFLCVRPQCKRPLQDIG--FVEEDSGLYCEFCF 167
+ CG C Q I + A+ + W D C C L ++G + C +
Sbjct: 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCD--LCGCRLGEVGRRLYYKLGRKLCRRDY 59
Query: 168 EQYLAPD---------------CLNAIGKHYHPECFTCAYCGKLFGN-NPFFLEEGLPYC 211
+ D + K YH ECF CA C K F + + L C
Sbjct: 60 LRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVC 119
Query: 212 ENDWNDLFTTK 222
E D +
Sbjct: 120 EQDIYEWTKIN 130
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 99.7 bits (248), Expect = 8e-26
Identities = 24/142 (16%), Positives = 42/142 (29%), Gaps = 4/142 (2%)
Query: 112 PLCGQCYQQIRGP-FITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQY 170
CG C + + + G + FLC+ CK+ L +YC+ C+ +
Sbjct: 8 KKCGVCQKAVYFAEEVQCEGSSFHKSCFLCM--VCKKNLDSTTVAVHGDEIYCKSCYGKK 65
Query: 171 LAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFACGFPI 230
P G + + C CG +
Sbjct: 66 YGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAV 125
Query: 231 EAGDRWVEALNNNYHSLCFNCS 252
A ++ V ++H CF C+
Sbjct: 126 YAAEK-VIGAGKSWHKSCFRCA 146
Score = 82.8 bits (204), Expect = 2e-19
Identities = 26/143 (18%), Positives = 42/143 (29%), Gaps = 13/143 (9%)
Query: 97 RGVLNPQNLAPGARVPLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVE 156
+ L+ +A C CY + GP G ++
Sbjct: 41 KKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLST-DKGESLGIKYEEGQSHR 99
Query: 157 EDSGLYCEFCFEQYLAPDC------------LNAIGKHYHPECFTCAYCGKLFGNNPFFL 204
+ + + C + GK +H CF CA CGK +
Sbjct: 100 PTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLAD 159
Query: 205 EEGLPYCENDWNDLFTTKCFACG 227
++G YC+ + F K F G
Sbjct: 160 KDGEIYCKGCYAKNFGPKGFGFG 182
Score = 65.8 bits (160), Expect = 3e-13
Identities = 16/107 (14%), Positives = 31/107 (28%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTK 222
C C + + + G +H CF C C K + + YC++ + + K
Sbjct: 10 CGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPK 69
Query: 223 CFACGFPIEAGDRWVEALNNNYHSLCFNCSSPSSPALSGAKPYGTQN 269
G + + + A A+ G +
Sbjct: 70 GKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSD 116
Score = 35.4 bits (81), Expect = 0.010
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 220 TTKCFACGFPIEAGDRWVEALNNNYHSLCFNCS 252
KC C + + V+ +++H CF C
Sbjct: 7 GKKCGVCQKAVYFAEE-VQCEGSSFHKSCFLCM 38
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 97.4 bits (242), Expect = 7e-25
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNN--PFFLEEGLPYCENDWNDLF- 219
C C + L A+ ++H C C+ C G+ + + G+ C ND+ LF
Sbjct: 8 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 67
Query: 220 -TTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSSPSSPALSGAKPYGTQNTI 271
+ C ACG I A + + A N YH CF CS+ + + G + + ++
Sbjct: 68 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSL 120
Score = 95.1 bits (236), Expect = 4e-24
Identities = 30/165 (18%), Positives = 46/165 (27%), Gaps = 22/165 (13%)
Query: 112 PLCGQCYQQIRGPFI-TALGKIWCPDHFLCVRPQCKRPLQDIG--FVEEDSGLYCEFCFE 168
C C +I F+ A+ W C C+ L DIG + + C +
Sbjct: 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCS--SCQAQLGDIGTSSYTKSGMILCRNDYI 63
Query: 169 QY--LAPDC-------------LNAIGKHYHPECFTCAYCGKLFGNN-PFFLEEGLPYCE 212
+ + C + A G YH +CFTC+ C F G +CE
Sbjct: 64 RLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCE 123
Query: 213 NDWNDLFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSSPSSP 257
+D G +G +
Sbjct: 124 HDRPTALINGHLNSGGSGGSGGS-GGDVMVVGEPTLMGGEFGDED 167
Score = 34.2 bits (78), Expect = 0.022
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 218 LFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSSPSSP 257
L +C CG I A + A+++ +HS C CSS +
Sbjct: 3 LSWKRCAGCGGKI-ADRFLLYAMDSYWHSRCLKCSSCQAQ 41
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 85.5 bits (212), Expect = 1e-21
Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 11/76 (14%)
Query: 159 SGLYCEFCFEQYLAPDC-----------LNAIGKHYHPECFTCAYCGKLFGNNPFFLEEG 207
S C+E AP C + + +H EC C C F +
Sbjct: 2 SSGSSGPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDE 61
Query: 208 LPYCENDWNDLFTTKC 223
PYC + +LF +
Sbjct: 62 DPYCVACFGELFASGP 77
Score = 66.2 bits (162), Expect = 2e-14
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 112 PLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYL 171
P C +C + + +T + W + +C C+ PL F D YC CF +
Sbjct: 16 PRCARCSKTLTQGGVTYRDQPWHRECLVCT--GCQTPLAGQQFTSRDEDPYCVACFGELF 73
Query: 172 APDC 175
A
Sbjct: 74 ASGP 77
Score = 47.3 bits (113), Expect = 1e-07
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 209 PYCENDWNDLFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSS 253
+ + F +C C + V + +H C C+
Sbjct: 4 GSSGPCYENKFAPRCARCSKTLT--QGGVTYRDQPWHRECLVCTG 46
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 85.2 bits (211), Expect = 2e-21
Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 85 GSSGLTTAPRRGRGVLNPQNLAPGARVPLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQ 144
GSSG ++ + V +++ G R P+C C Q IRGPF+ ALGK W P+ F C
Sbjct: 1 GSSG--SSGDQDTLVQRAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCA--H 56
Query: 145 CKRPLQDIGFVEEDSGLYCEFCFEQYLAPDC 175
CK + IGFVEE LYCE C+E++ A
Sbjct: 57 CKNTMAYIGFVEEKGALYCELCYEKFFASGP 87
Score = 42.4 bits (100), Expect = 9e-06
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 199 NNPFFLEEGLPYCEND-WNDLFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCS 252
+ ++ L T C C I ++ AL ++H FNC+
Sbjct: 3 SGSSGDQDTLVQRAEHIPAGKRTPMCAHCNQVIR--GPFLVALGKSWHPEEFNCA 55
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 82.0 bits (203), Expect = 2e-20
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 162 YCEFCFEQYLAPDC-----------LNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPY 210
F +P C L+A+ +HPECF C C F FF +G P+
Sbjct: 5 SSGKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPF 64
Query: 211 CENDWNDLFTTKC 223
CE ++ +
Sbjct: 65 CELHYHHRRGSGP 77
Score = 67.4 bits (165), Expect = 6e-15
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 112 PLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYL 171
P CG C + + +++A+ +W P+ F+C C F E D +CE +
Sbjct: 16 PKCGGCNRPVLENYLSAMDTVWHPECFVCG--DCFTSFSTGSFFELDGRPFCELHYHHRR 73
Query: 172 APDC 175
Sbjct: 74 GSGP 77
Score = 54.7 bits (132), Expect = 3e-10
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 207 GLPYCENDWNDLFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCS 252
D+ +F+ KC C P+ + ++ A++ +H CF C
Sbjct: 2 SSGSSGKDFLAMFSPKCGGCNRPVL--ENYLSAMDTVWHPECFVCG 45
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 76.0 bits (187), Expect = 5e-18
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 85 GSSGLTTAPRRGRGVLNPQNLAPGARVPLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQ 144
GSSG ++ R R+PLC +C I G + A K P+ F+C
Sbjct: 1 GSSG--SSGVRAPVTKVHGGAGSAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCA--D 56
Query: 145 CKRPLQDIGFVEEDSGLYCEFCFEQYLAPDC 175
C L+ G+ + LYCE +
Sbjct: 57 CNLNLKQKGYFFVEGELYCETHARARTSGPS 87
Score = 36.3 bits (84), Expect = 0.001
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 222 KCFACGFPIEAGDRWVEALNNNYHSLCFNCS 252
C CG I V+A + H CF C+
Sbjct: 27 LCDKCGSGIV--GAVVKARDKYRHPECFVCA 55
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 75.5 bits (186), Expect = 6e-18
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 13/78 (16%)
Query: 159 SGLYCEFCFEQYLAPDC-------------LNAIGKHYHPECFTCAYCGKLFGNNPFFLE 205
S C + +P C + G +H +CFTC+ C ++ G FF +
Sbjct: 2 SSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPK 61
Query: 206 EGLPYCENDWNDLFTTKC 223
YC F +
Sbjct: 62 GEDFYCVTCHETKFASGP 79
Score = 59.3 bits (144), Expect = 6e-12
Identities = 14/47 (29%), Positives = 18/47 (38%)
Query: 207 GLPYCENDWNDLFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSS 253
+ KC C I AGD+ VE +H CF CS+
Sbjct: 2 SSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSN 48
Score = 59.3 bits (144), Expect = 6e-12
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 112 PLCGQCYQQIRGP--FITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQ 169
P C C++ I + G +W D F C CK+ + F + YC C E
Sbjct: 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCS--NCKQVIGTGSFFPKGEDFYCVTCHET 73
Query: 170 YLAPDC 175
A
Sbjct: 74 KFASGP 79
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 75.2 bits (185), Expect = 8e-18
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 13/78 (16%)
Query: 159 SGLYCEFCFEQYLAPDC-------------LNAIGKHYHPECFTCAYCGKLFGNNPFFLE 205
S C++ A C L +H+H CF C C + + PF +
Sbjct: 2 SSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQ 61
Query: 206 EGLPYCENDWNDLFTTKC 223
+ C + + F++
Sbjct: 62 DSELLCNDCYCSAFSSGP 79
Score = 53.7 bits (129), Expect = 7e-10
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 112 PLCGQCYQQIRG--PFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQ 169
C +C Q I + + + F C +C+R L D F +DS L C C+
Sbjct: 16 NTCAECQQLIGHDSRELFYEDRHFHEGCFRCC--RCQRSLADEPFTCQDSELLCNDCYCS 73
Query: 170 YLAPDC 175
+
Sbjct: 74 AFSSGP 79
Score = 51.3 bits (123), Expect = 5e-09
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 209 PYCENDWNDLFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSS 253
+++ F C C I R + + ++H CF C
Sbjct: 4 GSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCR 48
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM
domain protein CLP-36, contractIle protein, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 75.2 bits (185), Expect = 9e-18
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 105 LAPGARVPLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCE 164
+ ++P+C +C I G F+ + P+ ++C C L+ G + +YCE
Sbjct: 9 IGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCT--DCGTNLKQKGHFFVEDQIYCE 66
Query: 165 FCFEQYLAPDC 175
+ ++
Sbjct: 67 KHARERVSGPS 77
Score = 66.3 bits (162), Expect = 2e-14
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTK 222
C+ C + + +H HPEC+ C CG F E YCE + +
Sbjct: 18 CDKC-GTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGP 76
Query: 223 C 223
Sbjct: 77 S 77
Score = 37.0 bits (86), Expect = 6e-04
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 219 FTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCS 252
C CG I +V+ + + H C+ C+
Sbjct: 14 KLPMCDKCGTGIV--GVFVKLRDRHRHPECYVCT 45
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 74.8 bits (184), Expect = 1e-17
Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 101 NPQNLAPGARVPLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSG 160
+ A G +C +C+ I + + PDHF C C + L E
Sbjct: 5 SSGEKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCA--NCGKELTADAR-ELKGE 61
Query: 161 LYCEFCFEQYLAPDC 175
LYC C ++
Sbjct: 62 LYCLPCHDKMGVSGP 76
Score = 30.9 bits (70), Expect = 0.089
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 223 CFACGFPIEAGDRWVEALNNNYHSLCFNCSS 253
C C I+ ++ + N+ YH FNC++
Sbjct: 18 CQKCHAIID--EQPLIFKNDPYHPDHFNCAN 46
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 73.6 bits (181), Expect = 2e-17
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 109 ARVPLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFE 168
+ C QC + I G I A+ W P+ F C C+ L DIGFV+ C C
Sbjct: 3 SGSSGCHQCGEFIIGRVIKAMNNSWHPECFRCD--LCQEVLADIGFVKNAGRHLCRPCHN 60
Query: 169 QYLAPDC 175
+ A
Sbjct: 61 REKASGP 67
Score = 66.3 bits (162), Expect = 1e-14
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTK 222
C C +++ + A+ +HPECF C C ++ + F G C N +
Sbjct: 8 CHQC-GEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASG 66
Query: 223 CFACG 227
+ G
Sbjct: 67 P-SSG 70
Score = 35.5 bits (82), Expect = 0.001
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 220 TTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSS 253
++ C CG I R ++A+NN++H CF C
Sbjct: 5 SSGCHQCGEFII--GRVIKAMNNSWHPECFRCDL 36
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 81
Score = 73.2 bits (180), Expect = 5e-17
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLE-EGLPYCENDWNDLFTT 221
C C Q + L A+GK YHP CFTC C + PF ++ +C D++ F +
Sbjct: 18 CATC-SQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFAS 76
Query: 222 KC 223
Sbjct: 77 GP 78
Score = 63.9 bits (156), Expect = 1e-13
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 111 VPLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQDIGF-VEEDSGLYCEFCFEQ 169
+ C C Q I + A+GK + P F CV C R L I F V+ S ++C F +
Sbjct: 15 LEKCATCSQPILDRILRAMGKAYHPGCFTCV--VCHRGLDGIPFTVDATSQIHCIEDFHR 72
Query: 170 YLAPDC 175
A
Sbjct: 73 KFASGP 78
Score = 37.3 bits (87), Expect = 5e-04
Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 209 PYCENDWNDLFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCS 252
KC C PI DR + A+ YH CF C
Sbjct: 4 GSSGEGCYVATLEKCATCSQPIL--DRILRAMGKAYHPGCFTCV 45
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 72.3 bits (178), Expect = 7e-17
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 110 RVPLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQ 169
VP+CG C + I G + A+GK W +HF+C +C++P E YCE + Q
Sbjct: 4 GVPICGACRRPIEGRVVNAMGKQWHVEHFVCA--KCEKPFLGHRHYERKGLAYCETHYNQ 61
Query: 170 YLAP 173
Sbjct: 62 LFGD 65
Score = 71.6 bits (176), Expect = 1e-16
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLF 219
C C + + +NA+GK +H E F CA C K F + + +GL YCE +N LF
Sbjct: 8 CGAC-RRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLF 63
Score = 38.8 bits (91), Expect = 1e-04
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 218 LFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCS 252
+ C AC PIE R V A+ +H F C+
Sbjct: 3 MGVPICGACRRPIE--GRVVNAMGKQWHVEHFVCA 35
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 71.6 bits (176), Expect = 1e-16
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTK 222
C C + + + +H ECF C C K F + YC N + DL+ +
Sbjct: 8 CVQCKKPITT-GGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASG 66
Query: 223 C 223
Sbjct: 67 P 67
Score = 68.9 bits (169), Expect = 1e-15
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 112 PLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYL 171
C QC + I +T + W + F+C C++ L F D YC CF
Sbjct: 6 SGCVQCKKPITTGGVTYREQPWHKECFVCT--ACRKQLSGQRFTARDDFAYCLNCFCDLY 63
Query: 172 APDC 175
A
Sbjct: 64 ASGP 67
Score = 33.5 bits (77), Expect = 0.008
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 217 DLFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSS 253
++ C C PI V +H CF C++
Sbjct: 2 SSGSSGCVQCKKPIT--TGGVTYREQPWHKECFVCTA 36
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein
1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 69
Score = 71.3 bits (175), Expect = 2e-16
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTK 222
C C + + + + +H +CF C C K F E YC + + + +
Sbjct: 8 CVKC-NKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGP 66
Query: 223 C 223
Sbjct: 67 S 67
Score = 68.2 bits (167), Expect = 2e-15
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 112 PLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYL 171
C +C + I IT + W D F+CV C + L F + YC C++ ++
Sbjct: 6 SGCVKCNKAITSGGITYQDQPWHADCFVCV--TCSKKLAGQRFTAVEDQYYCVDCYKNFV 63
Query: 172 APDC 175
+
Sbjct: 64 SGPS 67
Score = 35.1 bits (81), Expect = 0.002
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 217 DLFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSS 253
++ C C I + + +H+ CF C +
Sbjct: 2 SSGSSGCVKCNKAIT--SGGITYQDQPWHADCFVCVT 36
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 71.3 bits (175), Expect = 2e-16
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 163 CEFCFEQYLAPDC-------------LNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLP 209
EF + C +N+ G+ YH +CF CA C + F F+ EG
Sbjct: 2 SEFMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRK 61
Query: 210 YCENDWNDLF 219
YCE+D+ LF
Sbjct: 62 YCEHDFQMLF 71
Score = 63.6 bits (155), Expect = 1e-13
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 112 PLCGQCYQQIR--GPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQ 169
C +C + + G+++ F+C QC + + F E + YCE F+
Sbjct: 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCA--QCFQQFPEGLFYEFEGRKYCEHDFQM 69
Query: 170 YLAP 173
AP
Sbjct: 70 LFAP 73
Score = 46.6 bits (111), Expect = 2e-07
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 211 CENDWNDLFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSS 253
E N L + C C ++ V + YH CF C+
Sbjct: 2 SEFMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQ 44
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 70.2 bits (172), Expect = 6e-16
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 176 LNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFACG 227
+ A+ + +H CF C+ C F+ E YCE + + G
Sbjct: 22 VVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL-ESGPSSG 72
Score = 56.3 bits (136), Expect = 6e-11
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 20/85 (23%)
Query: 112 PLCGQCYQQIRG--PFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQ 169
CG C + + G + AL +++ F+C C+ L+ F + YCE C+
Sbjct: 6 SGCGGCGEDVVGDGAGVVALDRVFHVGCFVCS--TCRAQLRGQHFYAVERRAYCEGCYVA 63
Query: 170 YLAPDCLNAIGKHYHPECFTCAYCG 194
L G
Sbjct: 64 TLES----------------GPSSG 72
Score = 40.5 bits (95), Expect = 3e-05
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 220 TTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSS 253
++ C CG + V AL+ +H CF CS+
Sbjct: 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCST 38
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK,
IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 69.0 bits (169), Expect = 2e-15
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 163 CEFCFEQ-YLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLF 219
CE C A +N+ G+ YH +CF CA C + F F+ EG YCE+D+ LF
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71
Score = 60.1 bits (146), Expect = 3e-12
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 112 PLCGQCYQQIR--GPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQ 169
C +C + + G+++ F+C QC + + F E + YCE F+
Sbjct: 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCA--QCFQQFPEGLFYEFEGRKYCEHDFQM 69
Query: 170 YLA 172
A
Sbjct: 70 LFA 72
Score = 42.4 bits (100), Expect = 5e-06
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 218 LFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSS 253
+ C C ++ V + YH CF C+
Sbjct: 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQ 44
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 66.6 bits (163), Expect = 1e-14
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 163 CEFCFEQ-YLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTT 221
C C E L G+ +H CF C+ C + G+ F ++G YC + + F +
Sbjct: 8 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAS 67
Query: 222 KC 223
Sbjct: 68 GP 69
Score = 62.0 bits (151), Expect = 5e-13
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 112 PLCGQCYQQIR--GPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQ 169
C C + + + G+ W FLC C++PL FV + YC C+E
Sbjct: 6 SGCSACGETVMPGSRKLEYGGQTWHEHCFLCS--GCEQPLGSRSFVPDKGAHYCVPCYEN 63
Query: 170 YLAPDC 175
A
Sbjct: 64 KFASGP 69
Score = 47.4 bits (113), Expect = 9e-08
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 219 FTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSS 253
++ C ACG + G R +E +H CF CS
Sbjct: 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSG 38
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 66.7 bits (163), Expect = 1e-14
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTK 222
C C E+ L A+ K +H CF C C + + ++G+PYCE+D++ F +
Sbjct: 18 CAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVIL-TGEYISKDGVPYCESDYHAQFGSG 76
Query: 223 CFA 225
+
Sbjct: 77 PSS 79
Score = 31.6 bits (72), Expect = 0.049
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 219 FTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCS 252
+ C C I+ G + + AL+ +H CF C
Sbjct: 14 GPSHCAGCKEEIKHG-QSLLALDKQWHVSCFKCQ 46
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 66.3 bits (162), Expect = 1e-14
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 163 CEFCFEQYLAPD-CLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTT 221
C+ C + + + G +H CF C C + G F ++ +C + +
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAS 67
Query: 222 KC 223
Sbjct: 68 GP 69
Score = 60.5 bits (147), Expect = 2e-12
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 112 PLCGQCYQQIR--GPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQ 169
C +C + I + G W F+C +C++P+ F+ +D+ +C C+E+
Sbjct: 6 SGCQECKKTIMPGTRKMEYKGSSWHETCFICH--RCQQPIGTKSFIPKDNQNFCVPCYEK 63
Query: 170 YLAPDC 175
A
Sbjct: 64 QHASGP 69
Score = 47.8 bits (114), Expect = 7e-08
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 219 FTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSS 253
++ C C I G R +E +++H CF C
Sbjct: 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHR 38
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 66.9 bits (163), Expect = 3e-14
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 2/83 (2%)
Query: 157 EDSGLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNP--FFLEEGLPYCEND 214
S C C + L A+ ++H C C+ C G+ + + G+ C ND
Sbjct: 2 SLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRND 61
Query: 215 WNDLFTTKCFACGFPIEAGDRWV 237
+ LF V
Sbjct: 62 YIRLFGNSGAGGSGGHMGSGGDV 84
Score = 58.1 bits (140), Expect = 4e-11
Identities = 17/113 (15%), Positives = 27/113 (23%), Gaps = 5/113 (4%)
Query: 112 PLCGQCYQQIRGPFI-TALGKIWCPDHFLCVRPQCKRPLQDIG--FVEEDSGLYCEFCFE 168
C C +I F+ A+ W C C+ L DIG + + C +
Sbjct: 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCS--SCQAQLGDIGTSSYTKSGMILCRNDYI 63
Query: 169 QYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTT 221
+ G H F E+ +
Sbjct: 64 RLFGNSGAGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAA 116
Score = 30.7 bits (69), Expect = 0.23
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 218 LFTTKCFACGFPIEAGDRWV-EALNNNYHSLCFNCS 252
L +C CG I DR++ A+++ +HS C CS
Sbjct: 3 LSWKRCAGCGGKIA--DRFLLYAMDSYWHSRCLKCS 36
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM
domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 62.8 bits (153), Expect = 3e-13
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCEND-WNDLFTT 221
C C ++ + + ++GK +H C C CGK + EG PYC + ++ +F
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGP 62
Query: 222 KCFACG 227
K F G
Sbjct: 63 KGFGRG 68
Score = 45.8 bits (109), Expect = 4e-07
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 112 PLCGQCYQQIR-GPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYC-EFCFEQ 169
P C +C +++ +T+LGK W C +C + L G E + YC C+
Sbjct: 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCE--KCGKTLTSGGHAEHEGKPYCNHPCYSA 58
Query: 170 YLAPDC 175
P
Sbjct: 59 MFGPKG 64
Score = 32.3 bits (74), Expect = 0.022
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 222 KCFACGFPIEAGDRWVEALNNNYHSLCFNCS 252
KC C + +R V +L ++H C C
Sbjct: 2 KCPKCDKEVYFAER-VTSLGKDWHRPCLKCE 31
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 62.9 bits (153), Expect = 3e-13
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 13/76 (17%)
Query: 161 LYCEFCFEQYLAPDC-----------LNAIGKHYHPECFTCAYCGKLF--GNNPFFLEEG 207
+ C + A YHPECF C C + G+ ++
Sbjct: 4 GSSGKDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHA 63
Query: 208 LPYCENDWNDLFTTKC 223
YC N++ +
Sbjct: 64 TLYCGKCHNEVVSGPS 79
Score = 60.2 bits (146), Expect = 3e-12
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 112 PLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPL--QDIGFVEEDSGLYCEFCFEQ 169
C C + GPF+ A + P+ F C+ CK + D + + + LYC C +
Sbjct: 16 EFCHGCSLLMTGPFMVAGEFKYHPECFACMS--CKVIIEDGDAYALVQHATLYCGKCHNE 73
Query: 170 YLAPDC 175
++
Sbjct: 74 VVSGPS 79
Score = 46.7 bits (111), Expect = 2e-07
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 209 PYCENDWNDLFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSS 253
D+ F C C + ++ A YH CF C S
Sbjct: 4 GSSGKDYWGKFGEFCHGCSLLMT--GPFMVAGEFKYHPECFACMS 46
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 62.5 bits (152), Expect = 4e-13
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 16/74 (21%)
Query: 161 LYCEFCFEQYLAPDC----------------LNAIGKHYHPECFTCAYCGKLFGNNPFFL 204
C++ ++A C + G+ +H CF C C N F
Sbjct: 4 GSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVF 63
Query: 205 EEGLPYCENDWNDL 218
+ YC + L
Sbjct: 64 HQEQVYCPDCAKKL 77
Score = 55.2 bits (133), Expect = 2e-10
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 207 GLPYCENDWNDLFTTKCFACGFPIEA---GDRWVEALNNNYHSLCFNCSS 253
+ + + KC C PI G V ++H CF+C
Sbjct: 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKK 51
Score = 52.1 bits (125), Expect = 3e-09
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 7/63 (11%)
Query: 112 PLCGQCYQQIRGP-----FITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFC 166
C C I G + G+ W F C +C L + FV +YC C
Sbjct: 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCK--KCSVNLANKRFVFHQEQVYCPDC 73
Query: 167 FEQ 169
++
Sbjct: 74 AKK 76
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 61.7 bits (150), Expect = 9e-13
Identities = 13/65 (20%), Positives = 25/65 (38%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTK 222
C C + + G+ +H CF C C K + + + YC++ + + K
Sbjct: 10 CGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPK 69
Query: 223 CFACG 227
+ G
Sbjct: 70 GYGYG 74
Score = 46.2 bits (110), Expect = 3e-07
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 112 PLCGQCYQQI-RGPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQY 170
CG C + + + G+ + FLC+ C++ L D+ +YC+ C+ +
Sbjct: 8 NKCGACGRTVYHAEEVQCDGRSFHRCCFLCM--VCRKNLDSTTVAIHDAEVYCKSCYGKK 65
Query: 171 LAPDCLN 177
P
Sbjct: 66 YGPKGYG 72
Score = 31.6 bits (72), Expect = 0.050
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 220 TTKCFACGFPIEAGDRWVEALNNNYHSLCFNCS 252
KC ACG + + V+ ++H CF C
Sbjct: 7 GNKCGACGRTVYHAEE-VQCDGRSFHRCCFLCM 38
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 61.6 bits (149), Expect = 2e-12
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 4/93 (4%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFG--NNPFFLEEGLPYCENDWNDLFT 220
C C + L AI +++H +C +C CG G + + G C D+ L
Sbjct: 6 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG 65
Query: 221 TKCFAC--GFPIEAGDRWVEALNNNYHSLCFNC 251
+ G + G+ +
Sbjct: 66 SGGHMGSGGDVMVVGEPTLMGGEFGDEDERLIT 98
Score = 30.4 bits (68), Expect = 0.25
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 222 KCFACGFPIEAGDRWV-EALNNNYHSLCFNCS 252
C C I DR+ +A++ +H C +C
Sbjct: 5 TCGGCQQNIG--DRYFLKAIDQYWHEDCLSCD 34
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 57.9 bits (140), Expect = 2e-11
Identities = 9/49 (18%), Positives = 16/49 (32%)
Query: 175 CLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKC 223
++ + +H +CF C C F E C + D+
Sbjct: 23 YISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71
Score = 54.1 bits (130), Expect = 4e-10
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 112 PLCGQCYQQIRGP----FITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCF 167
C C I G +I+ + W D F C +C L GF+ E + C C
Sbjct: 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCFNCK--KCSLSLVGRGFLTERDDILCPDCG 63
Query: 168 EQYLAPDC 175
+ P
Sbjct: 64 KDISGPSS 71
Score = 42.1 bits (99), Expect = 7e-06
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 218 LFTTKCFACGFPIEA--GDRWVEALNNNYHSLCFNCSS 253
++ C C PI G +++ +H+ CFNC
Sbjct: 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKK 40
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 57.1 bits (138), Expect = 5e-11
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 112 PLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQDIG-FVEEDSGLYCEFC 166
C C Q I G ++ALGK + PD F+C C+ P C+ C
Sbjct: 16 TRCFSCDQFIEGEVVSALGKTYHPDCFVCA--VCRLPFPPGDRVTFNGKECMCQKC 69
Score = 55.6 bits (134), Expect = 1e-10
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 12/74 (16%)
Query: 160 GLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLF 219
G C C +Q++ + ++A+GK YHP+CF CA C F G
Sbjct: 15 GTRCFSC-DQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECM-------- 65
Query: 220 TTKCFACGFPIEAG 233
C C P+
Sbjct: 66 ---CQKCSLPVSVS 76
Score = 44.8 bits (106), Expect = 9e-07
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 214 DWNDLFTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSS 253
D+ L+ T+CF+C IE V AL YH CF C+
Sbjct: 9 DYQRLYGTRCFSCDQFIE--GEVVSALGKTYHPDCFVCAV 46
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN
actin- interacting protein, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 55.3 bits (133), Expect = 2e-10
Identities = 10/61 (16%), Positives = 17/61 (27%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTK 222
C + +H ECF C C F + +C+ + + T
Sbjct: 11 CSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI 70
Query: 223 C 223
Sbjct: 71 S 71
Score = 49.5 bits (118), Expect = 2e-08
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 112 PLCGQCYQQIRGP----FITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCF 167
C C + I G FI W + F C +C L GF+ ++ ++C+ C
Sbjct: 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCG--KCSVSLVGKGFLTQNKEIFCQKCG 63
Query: 168 EQ 169
Sbjct: 64 SG 65
Score = 43.7 bits (103), Expect = 2e-06
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 217 DLFTTKCFACGFPIEA--GDRWVEALNNNYHSLCFNCS 252
++ C AC PI G +++ ++ +HS CFNC
Sbjct: 2 SSGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCG 39
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 56.2 bits (135), Expect = 2e-10
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 162 YCEFCFEQYLAPDC-LNAIGKHYHPECFTCAYCGKLFGN-NPFFLEEGLPYCENDWNDLF 219
C C ++ A + + K YH ECF CA C K F + + L CE D +
Sbjct: 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWT 69
Query: 220 TTKCFACGFP 229
+ G
Sbjct: 70 KINGGSGGSG 79
Score = 43.9 bits (103), Expect = 5e-06
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 112 PLCGQCYQQIRG--PFITALGKIWCPDHFLCVRPQCKRPLQD-IGFVEEDSGLYCEFCFE 168
LC C ++IR + K++ + F C C++ ++ +S + CE
Sbjct: 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCA--ACQKHFSVGDRYLLINSDIVCEQDIY 66
Query: 169 QYLAPDC 175
++ +
Sbjct: 67 EWTKING 73
Score = 40.8 bits (95), Expect = 7e-05
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 218 LFTTK--CFACGFPIEAGDRWVEALNNNYHSLCFNCSS 253
LF C +C I A + + + YH CF C++
Sbjct: 4 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAA 41
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 55.9 bits (134), Expect = 3e-10
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPF--FLEEGLPYCENDWNDLF 219
C C + L A+ ++H C C+ C G+ + + G+ C ND+ LF
Sbjct: 64 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 122
Score = 31.6 bits (71), Expect = 0.100
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 201 PFFLEEGLPYCENDWNDLFTTKCFACGFPIEAGDRWV-EALNNNYHSLCFNCS 252
L G L +C CG I DR++ A+++ +HS C CS
Sbjct: 42 QSKLGGGGSGGHMGSGGLSWKRCAGCGGKIA--DRFLLYAMDSYWHSRCLKCS 92
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 54.3 bits (131), Expect = 4e-10
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCEND-WNDLFTT 221
C C + + ++++GK +H C C C K +G P+C + LF +
Sbjct: 12 CPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGS 71
Query: 222 KC 223
Sbjct: 72 GP 73
Score = 39.3 bits (92), Expect = 8e-05
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 112 PLCGQCYQQIR-GPFITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCE-FCFEQ 169
C +C + + +++LGK W C +C + L G E D +C C+
Sbjct: 10 SKCPKCDKTVYFAEKVSSLGKDWHKFCLKCE--RCSKTLTPGGHAEHDGKPFCHKPCYAT 67
Query: 170 YLAP 173
Sbjct: 68 LFGS 71
Score = 32.0 bits (73), Expect = 0.028
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 222 KCFACGFPIEAGDRWVEALNNNYHSLCFNCS 252
KC C + ++ V +L ++H C C
Sbjct: 11 KCPKCDKTVYFAEK-VSSLGKDWHKFCLKCE 40
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 54.1 bits (130), Expect = 6e-10
Identities = 17/65 (26%), Positives = 26/65 (40%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTK 222
C C + + L A + +H CF C+YC + G YC+ +N LF +K
Sbjct: 18 CVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 77
Query: 223 CFACG 227
Sbjct: 78 GNYDE 82
Score = 37.9 bits (88), Expect = 3e-04
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 112 PLCGQCYQQIRGP-FITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQY 170
C +C + + + A +++ F C C L + +YC+ F Q
Sbjct: 16 ETCVECQKTVYPMERLLANQQVFHISCFRCS--YCNNKLSLGTYASLHGRIYCKPHFNQL 73
Query: 171 LAPDC 175
Sbjct: 74 FKSKG 78
Score = 32.1 bits (73), Expect = 0.037
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 222 KCFACGFPIEAGDRWVEALNNNYHSLCFNCS 252
C C + +R + A +H CF CS
Sbjct: 17 TCVECQKTVYPMER-LLANQQVFHISCFRCS 46
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 50.1 bits (119), Expect = 1e-08
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGN-NPFFLEEGLPYC 211
C+ C E+Y+ L A KHYHP C C CG++F +L+ +
Sbjct: 8 CDSC-EKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWH 56
Score = 37.8 bits (87), Expect = 3e-04
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 112 PLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQD-IGFVEEDSGLYCEFCFEQY 170
C C + I G + A K + P LCVR C + + + S ++ C +
Sbjct: 6 SGCDSCEKYITGRVLEAGEKHYHPSCALCVR--CGQMFAEGEEMYLQGSSIWHPACRQAA 63
Query: 171 LAPD 174
D
Sbjct: 64 RTED 67
Score = 32.0 bits (72), Expect = 0.036
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 219 FTTKCFACGFPIEAGDRWVEALNNNYHSLCFNCSS 253
++ C +C I R +EA +YH C C
Sbjct: 4 GSSGCDSCEKYIT--GRVLEAGEKHYHPSCALCVR 36
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 43.0 bits (101), Expect = 5e-06
Identities = 14/52 (26%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLF--GNNPFFLEEGLPYCE 212
C C E + L G +H CF C C G +G YC
Sbjct: 18 CALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCL 69
Score = 31.1 bits (70), Expect = 0.082
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 220 TTKCFACGFPIEAGDRWVEALNNNYHSLCFNCS 252
C CG + +R + + +H CF C
Sbjct: 15 GDLCALCGEHLYVLER-LCVNGHFFHRSCFRCH 46
Score = 29.9 bits (67), Expect = 0.21
Identities = 7/44 (15%), Positives = 10/44 (22%)
Query: 126 ITALGKIWCPDHFLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQ 169
+ G + F C + D YC Q
Sbjct: 31 LCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQ 74
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 40.6 bits (95), Expect = 2e-05
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 219 FTTKCFACGFPIEAGDRWVEALNNNYHSL--CFNCSS 253
C C I+ + V N ++H+ CF CS
Sbjct: 1 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSC 37
Score = 39.1 bits (91), Expect = 9e-05
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 162 YCEFCFEQYLAPDC--LNAIGKHYH--PECFTCAYCGKLFGNNPFFLEEGLPYC 211
C+ C + P+ + +H ECF C+ C K F EG+ +C
Sbjct: 4 VCQGCHNA-IDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFC 56
Score = 24.8 bits (54), Expect = 9.5
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 114 CGQCYQQIR--GPFITALGKIW--CPDHFLCVRPQCKRPLQDIGFVEEDSGLYC 163
C C+ I +T W + FLC C + L F+ + ++C
Sbjct: 5 CQGCHNAIDPEVQRVTYNNFSWHASTECFLC--SCCSKCLIGQKFMPVEGMVFC 56
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.038
Identities = 8/30 (26%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 7 KQLVNKQYNSPVGIYSEESIAETLSAQAEV 36
KQ + K+ + + +Y+++S A L+ +A +
Sbjct: 19 KQAL-KKLQASLKLYADDS-APALAIKATM 46
Score = 27.2 bits (59), Expect = 3.7
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 11/23 (47%)
Query: 253 SP-SSPALSGAKPYGTQNTIKST 274
+ S+PAL+ IK+T
Sbjct: 33 ADDSAPALA----------IKAT 45
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.092
Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 31/108 (28%)
Query: 14 YNSPVGIY---SEESIAETLSAQAEVLAGGVL---------GVNFKKNEKNYTPANSEVL 61
++S + + I + L + G + + + +
Sbjct: 427 FHSH---LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE------ 477
Query: 62 KMVQEADQEP----RSPEPGS------GAGGKGGSSGLTTAPRRGRGV 99
++V + P + + + G GG G LT + G GV
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV 525
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 32.7 bits (74), Expect = 0.11
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 162 YCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLP 209
+C C + Y + + +H + C CG+L F E LP
Sbjct: 146 HCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLP 193
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 31.6 bits (72), Expect = 0.21
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 162 YCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLP 209
+C C + Y + + +H + C CG+L F E LP
Sbjct: 138 HCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLP 185
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei
unknown function, MLTA, bacteria autolysis,
peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB:
2bh0_A
Length = 208
Score = 30.2 bits (68), Expect = 0.61
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 79 GAGGKGGSSGLTTAPRRGRGV-LNPQNLAPG-ARVPLCGQCYQQIRGPFITALGKIW--C 134
G+G GG+ L P +NP +L G + L G ++ GP +
Sbjct: 15 GSGYSGGAFLLDPIPSDMEITAINPADLNYGGVKAALAGSYL-EVEGPKGKTTVYVTDLY 73
Query: 135 PD 136
P+
Sbjct: 74 PE 75
>2atm_A Hyaluronoglucosaminidase; beta-alpha-barrels, hydrolase; HET: MES;
2.00A {Vespula vulgaris}
Length = 331
Score = 27.2 bits (60), Expect = 7.2
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 170 YLAPDCLNAIGKHYHPEC 187
Y P C N + PEC
Sbjct: 180 YGYPYCFNMSPNNLVPEC 197
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding,
recombination,replication; 2.00A {Deinococcus
radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Length = 244
Score = 26.7 bits (59), Expect = 7.8
Identities = 9/42 (21%), Positives = 10/42 (23%), Gaps = 3/42 (7%)
Query: 175 CLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWN 216
L G P+ CA CG G C
Sbjct: 140 LLGLAG--VIPQTARCARCGAP-DPEHPDPLGGQLLCSKCAA 178
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing,
cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A
{Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A*
2w4q_A* 1vj1_A 2zb3_A*
Length = 357
Score = 26.8 bits (60), Expect = 9.7
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 104 NLAPGARVPLCGQ 116
+ + + LCGQ
Sbjct: 249 QMNENSHIILCGQ 261
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.447
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,339,753
Number of extensions: 259830
Number of successful extensions: 1093
Number of sequences better than 10.0: 1
Number of HSP's gapped: 924
Number of HSP's successfully gapped: 156
Length of query: 282
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 190
Effective length of database: 4,133,061
Effective search space: 785281590
Effective search space used: 785281590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)