RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11345
(282 letters)
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 45
Score = 64.8 bits (158), Expect = 1e-14
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 99 VLNPQNLAPGARVPLCGQCYQQIRGPFITALGKIWCPDHF 138
V +++ G R P+C C Q IRGPF+ ALGK W P+ F
Sbjct: 6 VQRAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEF 45
>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 50.9 bits (122), Expect = 7e-10
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 144 QCKRPLQDIGFVEEDSGLYCEFCFEQYLA 172
CK + IGFVEE LYCE C+E++ A
Sbjct: 4 HCKNTMAYIGFVEEKGALYCELCYEKFFA 32
Score = 22.8 bits (49), Expect = 8.7
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 190 CAYCGKLFGNNPFFLEEGLPYCENDWNDLF 219
CA+C F E+G YCE + F
Sbjct: 2 CAHCKNTMAYIGFVEEKGALYCELCYEKFF 31
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 49.8 bits (119), Expect = 2e-09
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 216 NDLFTTKCFACGFPIEAGDRWVEALNNNYHSLCF 249
+ KC C I AGD+ VE +H CF
Sbjct: 4 TREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCF 37
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 49.3 bits (118), Expect = 3e-09
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWNDLF 219
F CA C + F F+ EG YCE+D+ LF
Sbjct: 1 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 32
Score = 40.1 bits (94), Expect = 5e-06
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 138 FLCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLAP 173
F+C QC + + F E + YCE F+ AP
Sbjct: 1 FVCA--QCFQQFPEGLFYEFEGRKYCEHDFQMLFAP 34
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 43.9 bits (104), Expect = 2e-07
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 214 DWNDLFTTKCFACGFPIEAGDRWVEALNNNYHSLCF 249
D+ +F+ KC C P+ + ++ A++ +H CF
Sbjct: 2 DFLAMFSPKCGGCNRPVL--ENYLSAMDTVWHPECF 35
Score = 40.4 bits (95), Expect = 5e-06
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 112 PLCGQCYQQIRGPFITALGKIWCPDHF 138
P CG C + + +++A+ +W P+ F
Sbjct: 9 PKCGGCNRPVLENYLSAMDTVWHPECF 35
Score = 34.2 bits (79), Expect = 8e-04
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECF 188
C C + + + L+A+ +HPECF
Sbjct: 11 CGGC-NRPVLENYLSAMDTVWHPECF 35
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 37.0 bits (86), Expect = 7e-05
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 111 VPLCGQCYQQIRGPFITALGKIWCPDH 137
VP+CG C + I G + A+GK W +H
Sbjct: 5 VPICGACRRPIEGRVVNAMGKQWHVEH 31
Score = 25.1 bits (55), Expect = 1.3
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 218 LFTTKCFACGFPIEAGDRWVEALNNNYH 245
+ C AC PIE R V A+ +H
Sbjct: 3 MGVPICGACRRPIE--GRVVNAMGKQWH 28
Score = 23.9 bits (52), Expect = 3.2
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 175 CLNAIGKHYHPE 186
+NA+GK +H E
Sbjct: 19 VVNAMGKQWHVE 30
>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 34.0 bits (78), Expect = 0.001
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 188 FTCAYCGKLFGNNPFFLEEGLPYCENDWNDLF 219
F CA C K F + + +GL YCE +N LF
Sbjct: 1 FVCAKCEKPFLGHRHYERKGLAYCETHYNQLF 32
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 30.1 bits (68), Expect = 0.018
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 190 CAYCGKLFGNNPFFLEEGLPYCENDWNDL 218
C C F FF +G P+CE ++
Sbjct: 2 CGDCFTSFSTGSFFELDGRPFCELHYHHR 30
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 29.0 bits (65), Expect = 0.065
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 160 GLYCEFCFEQYLAPDCLNAIGKHYHPEC 187
G C C +Q++ + ++A+GK YHP+C
Sbjct: 15 GTRCFSC-DQFIEGEVVSALGKTYHPDC 41
Score = 27.4 bits (61), Expect = 0.25
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 214 DWNDLFTTKCFACGFPIEAGDRWVEALNNNYHSLC 248
D+ L+ T+CF+C IE V AL YH C
Sbjct: 9 DYQRLYGTRCFSCDQFIE--GEVVSALGKTYHPDC 41
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 28.9 bits (65), Expect = 0.086
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 190 CAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFACG 227
CA CGK + ++G YC+ + F K F G
Sbjct: 2 CAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFG 39
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 28.6 bits (64), Expect = 0.087
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 222 KCFACGFPIEAGDRWVEALNNNYHSLCF 249
KC C PI DR + A+ YH CF
Sbjct: 10 KCATCSQPIL--DRILRAMGKAYHPGCF 35
Score = 25.5 bits (56), Expect = 0.89
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 176 LNAIGKHYHPECF 188
L A+GK YHP CF
Sbjct: 23 LRAMGKAYHPGCF 35
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 26.9 bits (59), Expect = 0.32
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPEC 187
C+ C E+Y+ L A KHYHP C
Sbjct: 8 CDSC-EKYITGRVLEAGEKHYHPSC 31
>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 26.7 bits (59), Expect = 0.38
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 190 CAYCGKLFGNNPFFLEEGLPYCENDWNDLF 219
C C + + ++G+PYCE+D++ F
Sbjct: 2 CQTCSVIL-TGEYISKDGVPYCESDYHAQF 30
>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 26.7 bits (59), Expect = 0.39
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 139 LCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLA 172
+C R C++P+ F+ +D+ +C C+E+ A
Sbjct: 1 ICHR--CQQPIGTKSFIPKDNQNFCVPCYEKQHA 32
>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 27
Score = 26.1 bits (57), Expect = 0.51
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 223 CFACGFPIEAGDRWVEALNNNYHSLCF 249
C C I G R +E +++H CF
Sbjct: 1 CQECKKTIMPGTRKMEYKGSSWHETCF 27
>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 25.9 bits (57), Expect = 0.65
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 139 LCVRPQCKRPLQDIGFVEEDSGLYCEFCFEQYLA 172
LC C++PL FV + YC C+E A
Sbjct: 1 LCSG--CEQPLGSRSFVPDKGAHYCVPCYENKFA 32
>d1r7aa1 b.71.1.1 (A:435-504) Sucrose phosphorylase {Bifidobacterium
adolescentis [TaxId: 1680]}
Length = 70
Score = 26.5 bits (58), Expect = 0.98
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 82 GKGGSSGLTTAPRRGRGVLNPQNLA 106
G+ + LT P+RG GV N +A
Sbjct: 22 GETSQATLTFEPKRGLGVDNTTPVA 46
>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 25.4 bits (56), Expect = 1.2
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 144 QCKRPLQDIGFVEEDSGLYCEFCFEQYLAP 173
C L + +YC+ F Q
Sbjct: 4 YCNNKLSLGTYASLHGRIYCKPHFNQLFKS 33
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 281
Score = 27.9 bits (60), Expect = 1.4
Identities = 13/69 (18%), Positives = 18/69 (26%), Gaps = 2/69 (2%)
Query: 185 PECFTCAYCGKLFGNNPFFLE--EGLPYCENDWNDLFTTKCFACGFPIEAGDRWVEALNN 242
PECF Y F + E + N K G I D + + N
Sbjct: 51 PECFNSPYSTDQFRKYSEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIYN 110
Query: 243 NYHSLCFNC 251
+
Sbjct: 111 TSIIFNEDG 119
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO,
C-terminal domain {Deinococcus radiodurans [TaxId:
1299]}
Length = 157
Score = 26.2 bits (57), Expect = 3.0
Identities = 7/31 (22%), Positives = 8/31 (25%), Gaps = 1/31 (3%)
Query: 183 YHPECFTCAYCGKLFGNNPFFLEEGLPYCEN 213
P+ CA CG G C
Sbjct: 66 VIPQTARCARCGA-PDPEHPDPLGGQLLCSK 95
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 31
Score = 23.9 bits (52), Expect = 3.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 223 CFACGFPIEAGDRWVEALNNNYHSLCF 249
C ACG I A + + A N YH CF
Sbjct: 5 CSACGQSIPASELVMRAQGNVYHLKCF 31
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 25.1 bits (54), Expect = 3.9
Identities = 10/49 (20%), Positives = 15/49 (30%)
Query: 186 ECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFACGFPIEAGD 234
+ C+ C + +C N +D T C C P D
Sbjct: 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQD 69
>d1xeba_ d.108.1.1 (A:) Hypothetical protein PA0115 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 149
Score = 25.8 bits (56), Expect = 4.2
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 202 FFLEEGLPYCENDWNDLFTTKCFACGF 228
F +E+ PY E D DL +
Sbjct: 28 FVVEQKCPYQEVDGLDLVGDTHHLMAW 54
>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 35
Score = 23.6 bits (51), Expect = 5.5
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECF 188
C C + + L A + +H CF
Sbjct: 10 CVECQKTVYPMERLLANQQVFHISCF 35
>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 23.1 bits (50), Expect = 6.0
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 190 CAYCGKLFGNNPFFLEEGLPYCENDWNDLF 219
C C K F + YC N + DL+
Sbjct: 2 CTACRKQLSGQRFTARDDFAYCLNCFCDLY 31
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 25.5 bits (54), Expect = 6.1
Identities = 8/75 (10%), Positives = 12/75 (16%)
Query: 182 HYHPECFTCAYCGKLFGNNPFFLEEGLPYCENDWNDLFTTKCFACGFPIEAGDRWVEALN 241
L N L + + + C + RW E
Sbjct: 73 PDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGL 132
Query: 242 NNYHSLCFNCSSPSS 256
C
Sbjct: 133 GGVPEQKLQCHGQGP 147
>d2d8xa2 g.39.1.3 (A:8-32) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 22.9 bits (49), Expect = 6.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 114 CGQCYQQIRGPFITALGKIWCPDHF 138
C QC + I G I A+ W P+ F
Sbjct: 1 CHQCGEFIIGRVIKAMNNSWHPECF 25
>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 43
Score = 23.3 bits (50), Expect = 6.6
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 163 CEFCFEQYLAPDCLNAIGKHYHPECF 188
C C + A + + GK +H CF
Sbjct: 18 CPRCGQAVYAAEKVIGAGKSWHKSCF 43
>d1x64a1 g.39.1.3 (A:8-52) PDZ and LIM domain protein 3, PDLIM3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 45
Score = 23.2 bits (50), Expect = 7.1
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 180 GKHYHPECF 188
K+ HPECF
Sbjct: 37 DKYRHPECF 45
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase,
C-domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 154
Score = 25.0 bits (53), Expect = 8.3
Identities = 10/117 (8%), Positives = 21/117 (17%)
Query: 96 GRGVLNPQNLAPGARVPLCGQCYQQIRGPFITALGKIWCPDHFLCVRPQCKRPLQDIGFV 155
G G R P+ + A F + + + + +
Sbjct: 1 GAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADM 60
Query: 156 EEDSGLYCEFCFEQYLAPDCLNAIGKHYHPECFTCAYCGKLFGNNPFFLEEGLPYCE 212
L D + A + + G +
Sbjct: 61 AMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNT 117
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.138 0.447
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,092,675
Number of extensions: 53826
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 64
Length of query: 282
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,254,276
Effective search space: 248346648
Effective search space used: 248346648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)