BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11346
         (219 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3V5S|A Chain A, Structure Of SodiumCALCIUM EXCHANGER FROM METHANOCOCCUS
           JANNASCHII
 pdb|3V5U|A Chain A, Structure Of SodiumCALCIUM EXCHANGER FROM
           METHANOCALDOCOCCUS Jannaschii Dsm 2661
          Length = 320

 Score = 31.2 bits (69), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 21  LITGYIFVFLATVCDAYFVPCIDIVCQKLELSNDVAGATLMASGTSSPELFINL 74
           LI G I V    V    FV     +   L++S+ V G TL+A GTS PEL ++L
Sbjct: 168 LIIGLIGVL---VGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPELMVSL 218



 Score = 30.8 bits (68), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 37 YFVPCIDIVCQKLELSNDVAGATLMASGTSSPELF 71
          +FV   + + +   +SN V GAT+MA GTS PE+ 
Sbjct: 22 WFVLGSERIARHFNVSNFVIGATVMAIGTSLPEIL 56


>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From
           Acinetobacter Calcoaceticus
          Length = 371

 Score = 28.1 bits (61), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 24  GYIFVFLATVCDAYFVPCIDIVCQKLELSNDVAGATLMASGTSSP 68
           G   +  A VC A  +  +DIV  +LEL+  +    ++ S T  P
Sbjct: 203 GLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDP 247


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.141    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,781,612
Number of Sequences: 62578
Number of extensions: 205523
Number of successful extensions: 401
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 3
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)