Query psy11346
Match_columns 219
No_of_seqs 183 out of 1224
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 16:03:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 99.9 1.5E-26 5E-31 204.8 14.0 137 25-166 10-146 (320)
2 3v5u_A Uncharacterized membran 99.9 3.1E-23 1.1E-27 183.4 13.3 135 22-163 166-301 (320)
3 2knc_B Integrin beta-3; transm 20.2 1.4E+02 0.0049 20.1 4.2 14 166-179 39-52 (79)
4 2zjs_Y Preprotein translocase 18.3 5.1E+02 0.017 23.0 8.9 47 30-77 160-206 (434)
5 3zux_A Transporter, ASBTNM; tr 16.4 3.1E+02 0.011 23.1 6.6 52 49-101 97-149 (332)
6 3lrd_A Major ampullate spidroi 9.9 1.7E+02 0.0057 22.1 2.4 37 36-72 46-82 (137)
7 2jo1_A Phospholemman; FXYD1, N 8.6 4.7E+02 0.016 17.3 4.1 7 145-151 17-23 (72)
8 3hzq_A Large-conductance mecha 8.1 3.3E+02 0.011 19.8 3.3 16 80-95 33-48 (114)
9 2klu_A T-cell surface glycopro 7.6 3.2E+02 0.011 18.0 2.7 6 171-176 35-40 (70)
10 1f53_A Yeast killer toxin-like 7.4 1.5E+02 0.005 20.2 1.0 16 201-216 63-78 (84)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.94 E-value=1.5e-26 Score=204.82 Aligned_cols=137 Identities=23% Similarity=0.404 Sum_probs=123.6
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHhCCChhhhHHHHHHhcCChhHHHHHHHHHhhCCCceeehhhhhhhHHHHhhHhHHH
Q psy11346 25 YIFVFLATVCDAYFVPCIDIVCQKLELSNDVAGATLMASGTSSPELFINLIGTFITEGDVGTGTVVGSGVFNMLAVPALC 104 (219)
Q Consensus 25 ~lf~~l~i~~s~~~v~~~~~ia~~lgis~~v~G~tlla~gts~PEl~~si~a~~~g~~~iaig~iiGS~lfn~llv~gl~ 104 (219)
..-..+.+.++++|+++++.+++++|+||.+.|+|++|+|||+||+++++.|+++|++|+++||++|||+||+++++|++
T Consensus 10 ~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nillvlG~~ 89 (320)
T 3v5u_A 10 LLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIGLVLGLS 89 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHHHHHHHH
Confidence 33445667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCceeEecchhHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHH
Q psy11346 105 ILLCRSQKIRLDYWPLTRDSIIYMVAVLILAFSLQDGKVMWYEALSMVFFYYFYIIEKAKIV 166 (219)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~g~is~~~gi~Ll~~Y~~yl~~~~~~~ 166 (219)
+++ +|+++ ++.+.||..+++++.+++..+..++ ++|++|++|++.|+.|+.++++++
T Consensus 90 ~li---~p~~v-~~~~~~d~~~~l~~~~~l~~~~~~g-is~~~g~~Ll~~Y~~yl~~~~~~~ 146 (320)
T 3v5u_A 90 AII---SPIIV-DKNLQKNILVYLLFVIFAAVIGIDG-FSWIDGVVLLILFIIYLRWTVKNG 146 (320)
T ss_dssp HHH---SCBCC-CHHHHHHHHHHHHHHHHHHHHTTTC-BCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH---ccccc-cHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999 66777 5678899999888877766666788 999999999999999999987643
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.90 E-value=3.1e-23 Score=183.45 Aligned_cols=135 Identities=21% Similarity=0.287 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHhCCChhhhHHHHHHhcCChhHHHHHHHHHhhCCCceeehhhhhhhHHHHhhHh
Q psy11346 22 ITGYIFVFLATVCDAYFVPCIDIVCQKLELSNDVAGATLMASGTSSPELFINLIGTFITEGDVGTGTVVGSGVFNMLAVP 101 (219)
Q Consensus 22 ~~~~lf~~l~i~~s~~~v~~~~~ia~~lgis~~v~G~tlla~gts~PEl~~si~a~~~g~~~iaig~iiGS~lfn~llv~ 101 (219)
..+.....+...++++|+++++.+++.+|+|+.+.|+|++|+|||+||+++++.++++|+.|+++||++|||+||.++++
T Consensus 166 ~~l~~~l~~l~~~a~~lv~~~~~ia~~~gis~~~iGltlva~gtslPE~~~sv~aa~~g~~~laig~iiGS~ifn~~~v~ 245 (320)
T 3v5u_A 166 VLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPELMVSLAAAKRNLGGMVLGNVIGSNIADIGGAL 245 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTHHHHHTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHhCCchHHHHHHHHHHHhccHHHHHHHHHHHcCCCcHHHHHHHhHHHHHHHHHH
Confidence 33344555667789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceeEecchhHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH-HHHHHH
Q psy11346 102 ALCILLCRSQKIRLDYWPLTRDSIIYMVAVLILAFSLQDGKVMWYEALSMVFFYYF-YIIEKA 163 (219)
Q Consensus 102 gl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~g~is~~~gi~Ll~~Y~~-yl~~~~ 163 (219)
|++.++ +|++++ .+|..+++.+++++..+..+++++|+||++++++|+. |+.+..
T Consensus 246 g~~~li---~p~~~~----~~d~~~~l~~~~ll~~~~~~~~i~~~eG~~ll~~Y~~~y~~~~~ 301 (320)
T 3v5u_A 246 AVGSLF---MHLPAE----NVQMAVLVIMSLLLYLFAKYSKIGRWQGILFLALYIIAIASLRM 301 (320)
T ss_dssp HHHHHH---SCBCCC----HHHHHHHHHHHHHHHHHHHHSCBSHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHhh---ccccch----HHHHHHHHHHHHHHHHHHhCCcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999 666664 6898888877776666778999999999999999999 988755
No 3
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.17 E-value=1.4e+02 Score=20.10 Aligned_cols=14 Identities=7% Similarity=0.154 Sum_probs=6.7
Q ss_pred HHhhhchhhhhhhh
Q psy11346 166 VVTSGYKIYRDEVQ 179 (219)
Q Consensus 166 ~~~~~~~~~r~~~~ 179 (219)
+.++.|+++..++.
T Consensus 39 ~DrrE~~kFEkE~~ 52 (79)
T 2knc_B 39 HDRKEFAKFEEERA 52 (79)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455565544433
No 4
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=18.32 E-value=5.1e+02 Score=23.02 Aligned_cols=47 Identities=9% Similarity=0.001 Sum_probs=35.4
Q ss_pred HHHHhhhhhcccHHHHHHHhCCChhhhHHHHHHhcCChhHHHHHHHHH
Q psy11346 30 LATVCDAYFVPCIDIVCQKLELSNDVAGATLMASGTSSPELFINLIGT 77 (219)
Q Consensus 30 l~i~~s~~~v~~~~~ia~~lgis~~v~G~tlla~gts~PEl~~si~a~ 77 (219)
.++.++-+++.-.|.+++ .|++..+.=+++.....++|.-+.+....
T Consensus 160 ~L~aGt~~lmwLgE~It~-~GIGnGiSliI~~gIv~~lp~~~~~~~~~ 206 (434)
T 2zjs_Y 160 TQVAGIALLLWMAERITE-YGIGNGTSLIIFAGIVVEWLPQILRTIGL 206 (434)
T ss_dssp HHHHHHHHHHHHHHHHHH-TSSSCHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhh-cCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456667777777777 99998887788888999999877776653
No 5
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=16.37 E-value=3.1e+02 Score=23.13 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=26.8
Q ss_pred hCCChh-hhHHHHHHhcCChhHHHHHHHHHhhCCCceeehhhhhhhHHHHhhHh
Q psy11346 49 LELSND-VAGATLMASGTSSPELFINLIGTFITEGDVGTGTVVGSGVFNMLAVP 101 (219)
Q Consensus 49 lgis~~-v~G~tlla~gts~PEl~~si~a~~~g~~~iaig~iiGS~lfn~llv~ 101 (219)
+++++. ..|+.+++..-+.+--. -.....+|+.+.+.....=|++...+...
T Consensus 97 ~~l~~~~~~Glil~~~~P~~~~s~-v~t~~a~Gd~~la~~~~~~stll~~~~~P 149 (332)
T 3zux_A 97 LNLPAEIAVGVILVGCCPGGTASN-VMTYLARGNVALSVAVTSVSTLTSPLLTP 149 (332)
T ss_dssp TTCCHHHHHHHHHHHHSCCCTHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHhcCCchhHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 355543 45666666655443211 13334456666666666655555544443
No 6
>3lrd_A Major ampullate spidroin 1; dragline spider SILK, SELF-assembly, PH-dependence, NT D40N/ double-mutant, structural protein; HET: PGE; 2.15A {Euprosthenops australis} PDB: 3lr6_A* 2lpj_A 3lr2_A 2lpi_A 4fbs_A 3lr8_A*
Probab=9.85 E-value=1.7e+02 Score=22.08 Aligned_cols=37 Identities=22% Similarity=0.112 Sum_probs=30.5
Q ss_pred hhhcccHHHHHHHhCCChhhhHHHHHHhcCChhHHHH
Q psy11346 36 AYFVPCIDIVCQKLELSNDVAGATLMASGTSSPELFI 72 (219)
Q Consensus 36 ~~~v~~~~~ia~~lgis~~v~G~tlla~gts~PEl~~ 72 (219)
+-+...++..++.-+.++.-+=+..+|++.|+.|+++
T Consensus 46 ~ti~~a~d~~~~~g~ss~aklqAlnmAfASSiAeia~ 82 (137)
T 3lrd_A 46 QSMVQSIQSLAAQGRTSPNKLQALNMAFASSMAEIAA 82 (137)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888877779999999999999999999854
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=8.64 E-value=4.7e+02 Score=17.31 Aligned_cols=7 Identities=14% Similarity=0.088 Sum_probs=3.0
Q ss_pred HHHHHHH
Q psy11346 145 WYEALSM 151 (219)
Q Consensus 145 ~~~gi~L 151 (219)
|.-|+++
T Consensus 17 RiGGLif 23 (72)
T 2jo1_A 17 QIGGLVI 23 (72)
T ss_dssp HHHHHHH
T ss_pred hccchHH
Confidence 3444444
No 8
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=8.06 E-value=3.3e+02 Score=19.79 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=11.9
Q ss_pred CCCceeehhhhhhhHH
Q psy11346 80 TEGDVGTGTVVGSGVF 95 (219)
Q Consensus 80 g~~~iaig~iiGS~lf 95 (219)
|-.|+|+|-++|++.-
T Consensus 33 NViDLAVgVIIG~AF~ 48 (114)
T 3hzq_A 33 NVLDLAIAVVMGAAFN 48 (114)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHH
Confidence 3458888888888764
No 9
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=7.64 E-value=3.2e+02 Score=18.01 Aligned_cols=6 Identities=17% Similarity=0.013 Sum_probs=2.4
Q ss_pred chhhhh
Q psy11346 171 YKIYRD 176 (219)
Q Consensus 171 ~~~~r~ 176 (219)
|+|.|.
T Consensus 35 rhRrrq 40 (70)
T 2klu_A 35 RHRRRQ 40 (70)
T ss_dssp SCCSSS
T ss_pred HHHHHH
Confidence 444433
No 10
>1f53_A Yeast killer toxin-like protein; killer toxin-like protein,SKLP, crystallin family; NMR {Streptomyces SP} SCOP: b.11.1.4
Probab=7.38 E-value=1.5e+02 Score=20.23 Aligned_cols=16 Identities=13% Similarity=0.644 Sum_probs=0.0
Q ss_pred ccceeeeeeecCCCcc
Q psy11346 201 MGRWSTLAFDTHNQRT 216 (219)
Q Consensus 201 ~~~~~~~~~~~~~~~~ 216 (219)
+++|.-+.|-+||.+|
T Consensus 63 i~rw~~it~Pn~Pp~V 78 (84)
T 1f53_A 63 VDRWHDITYPNRPPKV 78 (84)
T ss_dssp CCSSCEECCSSSCCCC
T ss_pred ecceeEeecCCCCCcc
Done!