Query psy11346
Match_columns 219
No_of_seqs 183 out of 1224
Neff 7.0
Searched_HMMs 13730
Date Fri Aug 16 16:04:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11346.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11346hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 20.4 1.5E+02 0.011 22.4 7.2 17 146-162 57-73 (248)
2 d1xmeb2 f.17.2.1 (B:3-36) Bact 18.5 58 0.0042 16.7 2.9 16 17-32 17-32 (34)
3 d1l0oc_ a.4.13.2 (C:) SigmaF { 6.2 1.2E+02 0.009 17.2 1.8 15 40-54 32-46 (57)
4 d1rzhh2 f.23.10.1 (H:11-35) Ph 6.2 1.8E+02 0.013 14.0 2.4 12 21-32 7-18 (26)
5 d3bula1 a.46.1.1 (A:651-740) M 4.7 1.6E+02 0.012 18.6 1.8 35 35-80 44-78 (90)
6 d1y0pa3 d.168.1.1 (A:362-504) 4.4 2.3E+02 0.017 18.8 2.6 21 39-59 83-103 (143)
7 d2cg4a1 a.4.5.32 (A:4-66) Regu 4.3 2E+02 0.015 16.3 1.9 15 41-55 21-35 (63)
8 d1vg0a1 c.3.1.3 (A:3-444,A:558 4.2 1.9E+02 0.014 24.1 2.2 20 62-81 11-30 (491)
9 d2plsa1 d.145.1.4 (A:345-428) 4.0 2.6E+02 0.019 16.7 2.4 28 41-69 16-53 (84)
10 d3deda1 d.145.1.4 (A:341-427) 4.0 2.6E+02 0.019 16.9 2.4 28 41-69 18-56 (87)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=20.39 E-value=1.5e+02 Score=22.44 Aligned_cols=17 Identities=6% Similarity=0.260 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11346 146 YEALSMVFFYYFYIIEK 162 (219)
Q Consensus 146 ~~gi~Ll~~Y~~yl~~~ 162 (219)
.-|++++++|.+|-++.
T Consensus 57 ~PG~~~l~~Fvi~Pi~y 73 (248)
T d2r6gf1 57 YPGMAGMGLFVLFPLVC 73 (248)
T ss_dssp HHHHHHHHHHTHHHHHH
T ss_pred hhHHHHHHHHHHHhhee
Confidence 67899999998887654
No 2
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=18.51 E-value=58 Score=16.66 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11346 17 IFPTLITGYIFVFLAT 32 (219)
Q Consensus 17 ~~~~l~~~~lf~~l~i 32 (219)
+-|.+.++|+|++++.
T Consensus 17 lafslamlfvfialia 32 (34)
T d1xmeb2 17 LAFSLAMLFVFIALIA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5567888888887653
No 3
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=6.24 E-value=1.2e+02 Score=17.18 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=10.4
Q ss_pred ccHHHHHHHhCCChh
Q psy11346 40 PCIDIVCQKLELSND 54 (219)
Q Consensus 40 ~~~~~ia~~lgis~~ 54 (219)
|+.+.||+.+|++..
T Consensus 32 PT~~EiA~~l~~~~e 46 (57)
T d1l0oc_ 32 PTVTEIADHLGISPE 46 (57)
T ss_dssp CBHHHHHHHHTSCHH
T ss_pred CCHHHHHHHHCcCHH
Confidence 566777777777654
No 4
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.21 E-value=1.8e+02 Score=14.03 Aligned_cols=12 Identities=17% Similarity=0.190 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHH
Q psy11346 21 LITGYIFVFLAT 32 (219)
Q Consensus 21 l~~~~lf~~l~i 32 (219)
+|+++.|.++++
T Consensus 7 iw~fw~ffalli 18 (26)
T d1rzhh2 7 IYSFWIFLAGLI 18 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555544
No 5
>d3bula1 a.46.1.1 (A:651-740) Methionine synthase domain {Escherichia coli [TaxId: 562]}
Probab=4.74 E-value=1.6e+02 Score=18.62 Aligned_cols=35 Identities=6% Similarity=0.017 Sum_probs=26.0
Q ss_pred hhhhcccHHHHHHHhCCChhhhHHHHHHhcCChhHHHHHHHHHhhC
Q psy11346 35 DAYFVPCIDIVCQKLELSNDVAGATLMASGTSSPELFINLIGTFIT 80 (219)
Q Consensus 35 s~~~v~~~~~ia~~lgis~~v~G~tlla~gts~PEl~~si~a~~~g 80 (219)
.+.|+++++.++++++=++.+ +||++.|.-+.+.|
T Consensus 44 ~~~Li~gm~~VG~~f~~ge~f-----------lP~vl~sA~aMk~~ 78 (90)
T d3bula1 44 EGPLMDGMNVVGDLFGEGKMF-----------LPQVVKSARVMKQA 78 (90)
T ss_dssp HTHHHHHHHHHHHHHHHTSSC-----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCch-----------HHHHHHHHHHHHHH
Confidence 467888899999988865654 68888877666543
No 6
>d1y0pa3 d.168.1.1 (A:362-504) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}
Probab=4.43 E-value=2.3e+02 Score=18.79 Aligned_cols=21 Identities=5% Similarity=-0.027 Sum_probs=16.2
Q ss_pred cccHHHHHHHhCCChhhhHHH
Q psy11346 39 VPCIDIVCQKLELSNDVAGAT 59 (219)
Q Consensus 39 v~~~~~ia~~lgis~~v~G~t 59 (219)
.++++.+|+++|+++..+-.|
T Consensus 83 adtleeLA~~~gid~~~L~~T 103 (143)
T d1y0pa3 83 ADSLVKLGKMEGIDGKALTET 103 (143)
T ss_dssp ESSHHHHHHHHTSCHHHHHHH
T ss_pred cCcHHHHHHHhCCCHHHHHHH
Confidence 468999999999987754443
No 7
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=4.28 E-value=2e+02 Score=16.29 Aligned_cols=15 Identities=7% Similarity=0.204 Sum_probs=12.0
Q ss_pred cHHHHHHHhCCChhh
Q psy11346 41 CIDIVCQKLELSNDV 55 (219)
Q Consensus 41 ~~~~ia~~lgis~~v 55 (219)
+...||+++|+|++.
T Consensus 21 s~~eiA~~l~ls~~~ 35 (63)
T d2cg4a1 21 AYAELAKQFGVSPET 35 (63)
T ss_dssp CHHHHHHHHTSCHHH
T ss_pred CHHHHHHHHCcCHHH
Confidence 678888988888764
No 8
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.18 E-value=1.9e+02 Score=24.13 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=17.5
Q ss_pred HhcCChhHHHHHHHHHhhCC
Q psy11346 62 ASGTSSPELFINLIGTFITE 81 (219)
Q Consensus 62 a~gts~PEl~~si~a~~~g~ 81 (219)
-+||+++|-+++.+.++.|+
T Consensus 11 I~GTGL~ESILAaAlSr~Gk 30 (491)
T d1vg0a1 11 VIGTGLPESIIAAACSRSGQ 30 (491)
T ss_dssp EECCSHHHHHHHHHHHHTTC
T ss_pred EECCChHHHHHHHHHHhcCC
Confidence 37999999999999998874
No 9
>d2plsa1 d.145.1.4 (A:345-428) Hypothetical protein CT0541 {Chlorobium tepidum [TaxId: 1097]}
Probab=4.04 E-value=2.6e+02 Score=16.73 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=20.3
Q ss_pred cHHHHHHHhCCC----------hhhhHHHHHHhcCChhH
Q psy11346 41 CIDIVCQKLELS----------NDVAGATLMASGTSSPE 69 (219)
Q Consensus 41 ~~~~ia~~lgis----------~~v~G~tlla~gts~PE 69 (219)
.++.+.+.+++. ++++|+++--+|. .|+
T Consensus 16 ~l~dl~~~l~~~~~~~~e~~~~~Tl~G~i~~~lg~-iP~ 53 (84)
T d2plsa1 16 AVPELKDTLGLRAVPEEEKGVYHTLSGMIMWLLGR-LPQ 53 (84)
T ss_dssp BHHHHHHHHTCSCCTTTTSCSCCBHHHHHHHHHTS-CCC
T ss_pred CHHHHHHHHCCCCCcccccccccCHHHHHHHHhCc-cCC
Confidence 467777887763 4899988877776 665
No 10
>d3deda1 d.145.1.4 (A:341-427) Probable hemolysin CV0231 {Chromobacterium violaceum [TaxId: 536]}
Probab=4.04 E-value=2.6e+02 Score=16.88 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=20.8
Q ss_pred cHHHHHHHhCCC-----------hhhhHHHHHHhcCChhH
Q psy11346 41 CIDIVCQKLELS-----------NDVAGATLMASGTSSPE 69 (219)
Q Consensus 41 ~~~~ia~~lgis-----------~~v~G~tlla~gts~PE 69 (219)
.++.+.+.+|+. ++++|.++--+|. .|+
T Consensus 18 ~l~dl~~~~~~~l~~~~~~~~~~~TlgG~il~~lg~-iP~ 56 (87)
T d3deda1 18 SLDRFREFFELEAPLPGEAGGNIHTLAGVMLYQLGR-VPS 56 (87)
T ss_dssp BHHHHHHHTTCCSCCTTGGGTCCCBHHHHHHHHHCS-SCC
T ss_pred CHHHHHHHhCCCCCCCccccccccCHHHHHHHHhCc-CCC
Confidence 567788888763 2899998887776 664
Done!