RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11346
(219 letters)
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 146 bits (370), Expect = 2e-40
Identities = 63/135 (46%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
Query: 25 YIFVFLATVCDAYFVPCIDIVCQKLELSNDVAGATLMASGTSSPELFINLIGTFITEGDV 84
Y+FV LA VCD YFVP + ++ KL++S DVAGAT MA+G S+PELF +LIG FI+ +V
Sbjct: 466 YVFVALAIVCDEYFVPALGVITDKLQISEDVAGATFMAAGGSAPELFTSLIGVFISHSNV 525
Query: 85 GTGTVVGSGVFNMLAVPALCILLCRSQKIRLDYWPLTRDSIIYMVAVLILAFSLQDGKVM 144
G GT+VGS VFN+L V C L R + + L +WPL RD Y++ +++L D +
Sbjct: 526 GIGTIVGSAVFNILFVIGTCALFSR-EILNLTWWPLFRDVSFYILDLMMLILFFLDSLIA 584
Query: 145 WYEALSMVFFYYFYI 159
W+E+L ++ Y Y+
Sbjct: 585 WWESLLLLLAYALYV 599
Score = 40.0 bits (93), Expect = 6e-04
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 15/99 (15%)
Query: 8 FPFGFVGAIIFPTLITGYIFVFLATVCDAYFVPCIDIVCQKLELSNDVAGATLMASGTSS 67
F F+G+I++ + + Y+ V+ A V + + +S ++ G T++A+GTS
Sbjct: 934 FVITFLGSIMWIAMFS-YLMVWWAHQ-----------VGETIGISEEIMGLTILAAGTSI 981
Query: 68 PELFINLIGTFITEGDVGTGTVVGSGVFNM---LAVPAL 103
P+L ++I GD+ + VGS +F++ L VP L
Sbjct: 982 PDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPVPWL 1020
>gnl|CDD|232943 TIGR00367, TIGR00367, K+-dependent Na+/Ca+ exchanger
related-protein. This model models a family of
bacterial and archaeal proteins that is homologous,
except for lacking a central region of ~ 250 amino acids
and an N-terminal region of > 100 residues, to a
functionally proven potassium-dependent sodium-calcium
exchanger of the rat [Unknown function, General].
Length = 307
Score = 96.2 bits (240), Expect = 6e-24
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 6/150 (4%)
Query: 25 YIFVFLATVCDAYFVPCIDIVCQKLELSNDVAGATLMASGTSSPELFINLIGTFITEGDV 84
+ + L FV + + L +S + G T++A GTS PELF +LI + + + D+
Sbjct: 8 ILGLILLIYGADLFVKSSVRIARHLGISPLIIGVTVVAIGTSLPELFTSLIASLMGQPDI 67
Query: 85 GTGTVVGSGVFNMLAVPALCILLCRSQKIRLDYWPLTRDSIIYMVAVLILAFSLQDGKVM 144
G G V+GS +FN+L + L + I +D L RD + Y++ ++L F DG++
Sbjct: 68 GVGNVIGSNIFNILLILGLSAIF---SPIIVDKDWLRRDILFYLLVSILLLFFGLDGQIS 124
Query: 145 WYEALSMVFFYYFY---IIEKAKIVVTSGY 171
+ + ++ Y Y +++ + V Y
Sbjct: 125 RIDGVVLLILYIVYLLFLVKNERWVKYDTY 154
Score = 52.7 bits (127), Expect = 2e-08
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 49 LELSNDVAGATLMASGTSSPELFINLIGTFITEGDVGTGTVVGSGVFNMLAVPALCILLC 108
L +S + G TL+A GTS PEL ++L GD+ G V+GS +FN+L + L
Sbjct: 200 LGISEKIIGLTLLAIGTSLPELVVSLAAARKGLGDIAVGNVIGSNIFNILVGLGVPSLFM 259
Query: 109 RSQKIRLDYWPLTRD-SIIYMVAVLILAFSLQDGKVMWYEALSMVFFYYFY 158
I ++ D ++ +V +L++ F K+ +E + ++ Y Y
Sbjct: 260 P---IPVEPLAYNLDAPVMVIVTLLLMLFFKTSMKLGRWEGILLLALYIAY 307
>gnl|CDD|216653 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein. This is a
family of sodium/calcium exchanger integral membrane
proteins. This family covers the integral membrane
regions of the proteins. Sodium/calcium exchangers
regulate intracellular Ca2+ concentrations in many
cells; cardiac myocytes, epithelial cells, neurons
retinal rod photoreceptors and smooth muscle cells. Ca2+
is moved into or out of the cytosol depending on Na+
concentration. In humans and rats there are 3 isoforms;
NCX1 NCX2 and NCX3.
Length = 135
Score = 79.9 bits (198), Expect = 3e-19
Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 29 FLATVCDAYFVPCIDIVCQKLELSNDVAGATLMASGTSSPELFINLIGTFITEGDVGTGT 88
L + V + + + L +S V G TL+A GTS PELF ++I D+ G
Sbjct: 1 LLIILLADLLVDSAESIAEVLGISPTVIGLTLLALGTSLPELFSSIIAALKGNADLALGN 60
Query: 89 VVGSGVFNMLAVPALCILLCRSQKIRLDYWPLTRDSIIYMVAVLILA--FSLQDGKVMWY 146
V+GS +FN+L V L L +++ PL+ D ++ +L+L L DG++ +
Sbjct: 61 VIGSNLFNILLVLGLS-ALISPIGLKVLVSPLSLDFSFLLLVLLLLLLFLLLSDGRISRF 119
Query: 147 EALSMVFFYYFYII 160
E L ++ Y Y++
Sbjct: 120 EGLVLLLLYIVYLV 133
>gnl|CDD|223604 COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and
metabolism].
Length = 320
Score = 68.8 bits (169), Expect = 7e-14
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 4/143 (2%)
Query: 19 PTLITGYIFVFLATVCDA-YFVPCIDIVCQKLELSNDVAGATLMASGTSSPELFINLIGT 77
LI I + V A V + ++ +S + G T++A GTS PEL ++L+
Sbjct: 9 LLLILLLIAGLILLVKGADLLVDAASAISRRFGISELIIGLTIVAFGTSLPELAVSLVAA 68
Query: 78 FITEGDVGTGTVVGSGVFNMLAVPALCILLCRSQKIRLDYWPLTRDSIIYMVAVLILAFS 137
D+ G V+GS +FN+L + L L+ +++D L R+ ++A LIL
Sbjct: 69 LSGNPDIAVGNVLGSNIFNILLILGLAALIAP---LKVDSDVLRREIPFLLLATLILLLV 125
Query: 138 LQDGKVMWYEALSMVFFYYFYII 160
L DG + + + ++ Y Y+
Sbjct: 126 LLDGHLSRLDGIVLLLLYVLYLY 148
Score = 54.5 bits (132), Expect = 6e-09
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 37 YFVPCIDIVCQKLELSNDVAGATLMASGTSSPELFINLIGTFITEGDVGTGTVVGSGVFN 96
V + + +S + G T++A GTS PEL ++++ E D+ G V+GS +FN
Sbjct: 193 LLVDGAVEIAEIFGISELIIGLTIVAIGTSLPELVVSIVAARKGEDDIAVGNVIGSNIFN 252
Query: 97 MLAVPALCILLCRSQKIRLDYWPLTRDSIIYMVAVLILAFSLQDGKVMWYEALSMVFFYY 156
+L V + L+ + +I + +L+L + + ++ E L ++ Y
Sbjct: 253 ILIVLGISALIGPITVEPSAL-LVDAPVLILVTLLLLLFLARRRRRIGRKEGLLLLGLYI 311
Query: 157 FYII 160
Y+
Sbjct: 312 VYVA 315
>gnl|CDD|233149 TIGR00845, caca, sodium/calcium exchanger 1. The Ca2+:Cation
Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA
family are found ubiquitously, having been identified in
animals, plants, yeast, archaea and widely divergent
bacteria.All of the characterized animal proteins
catalyze Ca2+:Na+ exchange although some also transport
K+. The NCX1 plasma membrane protein exchanges 3 Na+ for
1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+
antiport but may also catalyze Na+:H+ antiport. All
remaining well-characterized members of the family
catalyze Ca2+:H+ exchange.This model is specific for the
eukaryotic sodium ion/calcium ion exchangers of the Caca
family [Transport and binding proteins, Other].
Length = 928
Score = 59.8 bits (145), Expect = 2e-10
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 13/134 (9%)
Query: 55 VAGATLMASGTSSPELFINLI---GTFITEGDVGTGTVVGSGVFNMLAVPALCILLCRSQ 111
V+ TLMA G+S+PE+ +++I G GD+G T+VGS FNM + A+C+ +
Sbjct: 131 VSNLTLMALGSSAPEILLSVIEVCGHNFEAGDLGPSTIVGSAAFNMFIIIAICVYVIPDG 190
Query: 112 KIR----LDYWPLTRD-SII-YMVAVLILAFSLQDGKVMWYEALSMVFF----YYFYIIE 161
+ R L + +T S+ Y+ LILA +W L+ FF + ++ +
Sbjct: 191 ETRKIKHLRVFFVTAAWSVFAYVWLYLILAVFSPGVVEVWEGLLTFFFFPLCVVFAWVAD 250
Query: 162 KAKIVVTSGYKIYR 175
+ + YK YR
Sbjct: 251 RRLLFYKYVYKRYR 264
>gnl|CDD|215604 PLN03151, PLN03151, cation/calcium exchanger; Provisional.
Length = 650
Score = 45.5 bits (108), Expect = 9e-06
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 5/136 (3%)
Query: 26 IFVFLATVCDAYFVPCIDIVCQKLELSNDVAGATLMASGTSSPELFINLIGTFI--TEGD 83
+F L YF ++ + + L L VAG TL+ G +P++F + I F+ G+
Sbjct: 150 LFYLLGNTAADYFCCSLEKLSKLLRLPPTVAGVTLLPLGNGAPDVFAS-IAAFVGKDAGE 208
Query: 84 VGTGTVVGSGVFNMLAVPALCILLCRSQK-IRLDYWPLTRDSIIYMVAVLILAFSLQDGK 142
VG +V+G VF + V + LC + K +++D RD ++ ++ L L GK
Sbjct: 209 VGLNSVLGGAVF-VTCVVVGIVSLCVADKEVQIDKRCFIRDLCFFLFTLVSLLVILMVGK 267
Query: 143 VMWYEALSMVFFYYFY 158
V A++ V Y Y
Sbjct: 268 VTVGGAIAFVSIYVVY 283
>gnl|CDD|182684 PRK10734, PRK10734, putative calcium/sodium:proton antiporter;
Provisional.
Length = 325
Score = 44.6 bits (106), Expect = 1e-05
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 13 VGAIIFPTLITGYIFVFLATVCDAYFVPCIDIVCQKLELSNDVAGATLMASGTSSPELFI 72
+ II P + + + ATV YF +S G T++A GTS PEL
Sbjct: 181 IALIIMP--MATRMVIDNATVLANYF-----------AISELTIGLTVIAIGTSLPELAT 227
Query: 73 NLIGTFITEGDVGTGTVVGSGVFNMLAVPALCILLCRS----QKIRLDYWPLTRDSIIYM 128
+ G E D+ G ++GS +FN++ V L L+ DYW + S+I+
Sbjct: 228 AIAGARKGENDIAVGNIIGSNIFNIVIVLGLPALISPGEINPLAFSRDYWVMLLVSVIFA 287
Query: 129 V 129
+
Sbjct: 288 L 288
Score = 35.0 bits (81), Expect = 0.019
Identities = 30/124 (24%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 44 IVCQKLELSNDVAGATLMASGTSSPELFINLIGTFITEGDVGTGTVVGSGVFNMLAVPAL 103
I+C+ + + G T++ GTS PE+ +++ + + D+ GT +GS + N+L + L
Sbjct: 28 ILCRTFGIPPLIIGMTVVGIGTSLPEIIVSVAASLHGQRDLAVGTALGSNITNILLILGL 87
Query: 104 CILLCRSQKIRLDYWPLTRDSIIYMVAVLILA-FSLQDGKVMWYEALSMVFFYYFYIIEK 162
L+ R + D + R + M+ V +LA L DG++ + + ++ +++
Sbjct: 88 AALI-RPFTVHSD---VLRRELPLMLLVSVLAGSVLYDGQLSRSDGIFLLLLAVLWLLFI 143
Query: 163 AKIV 166
KI
Sbjct: 144 VKIA 147
>gnl|CDD|129926 TIGR00846, caca2, calcium/proton exchanger. The Ca2+:Cation
Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA
family are found ubiquitously, having been identified in
animals, plants, yeast, archaea and widely divergent
bacteria.All of the characterized animal proteins
catalyze Ca2+:Na+ exchange although some also transport
K+. The NCX1 plasma membrane protein exchanges 3 Na+ for
1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+
antiport but may also catalyze Na+:H+ antiport. All
remaining well-characterized members of the family
catalyze Ca2+:H+ exchange.This model is generated from
the calcium ion/proton exchangers of the CacA family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 365
Score = 31.6 bits (72), Expect = 0.26
Identities = 28/141 (19%), Positives = 56/141 (39%), Gaps = 4/141 (2%)
Query: 24 GYIFVFLATV----CDAYFVPCIDIVCQKLELSNDVAGATLMASGTSSPELFINLIGTFI 79
++ AT+ Y V I+ + LS G L ++ E +I F
Sbjct: 222 AAAWLVGATIVVALLAEYLVDTIESAVESWGLSVAFIGVILAPIVGNAAEHAGAVIAAFK 281
Query: 80 TEGDVGTGTVVGSGVFNMLAVPALCILLCRSQKIRLDYWPLTRDSIIYMVAVLILAFSLQ 139
+ D+ G +GS + L V + +L+ I +D +++ ++V + +LQ
Sbjct: 282 NKLDIALGVALGSALQIALFVVPVVVLVAWMLGIPMDLNFGAPETVALALSVFLTTITLQ 341
Query: 140 DGKVMWYEALSMVFFYYFYII 160
DG+ + E ++ Y +
Sbjct: 342 DGRSNYLEGAVLLALYIIIAM 362
>gnl|CDD|237690 PRK14365, PRK14365, Maf-like protein; Provisional.
Length = 197
Score = 30.2 bits (68), Expect = 0.64
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 157 FYIIEKAKIVV---TSGYKIYRDEVQFYNQEDIGKSNPTNKAKEM 198
+ +EKA+ V SG I D F N E +GK A+EM
Sbjct: 48 KHSLEKARDVAKHFDSGIIISADTSVFCNGEVLGKPASPENAEEM 92
>gnl|CDD|223464 COG0387, ChaA, Ca2+/H+ antiporter [Inorganic ion transport and
metabolism].
Length = 368
Score = 29.6 bits (67), Expect = 1.1
Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 13/140 (9%)
Query: 28 VFLATVCDAYFVPCIDIVCQKLELSNDVAGATLMASGTSSPELFINLIGTFITEGDVGTG 87
L + V ++ V + L G + A ++PE L +
Sbjct: 230 TVLVALLAEILVGSLEAVLESLGAPPAFVGLIIAALVGNAPEHLTALRAALNNRMQLSMN 289
Query: 88 TVVGSGV-FNMLAVPALCIL-LCRSQKIRLDYWPLTRDSIIYMVAVLILAFSLQDGKVMW 145
+GS + +L +P L ++ L Q + L + P + ++ +V V + DG+ W
Sbjct: 290 IAMGSALQTALLTIPVLVLISLFTGQPLTLGFGPP--ELVLLVVTVFLANILFSDGRTNW 347
Query: 146 YE---------ALSMVFFYY 156
E +M+FF+
Sbjct: 348 LEGVVLLALYAIYAMLFFFP 367
>gnl|CDD|198278 cd10415, SH2_Grb10, Src homology 2 (SH2) domain found in the growth
factor receptor bound, subclass 10 (Grb10) proteins.
The Grb family binds to the epidermal growth factor
receptor (EGFR, erbB1) via their SH2 domains. Grb10 is
part of the Grb7 family of proteins which also includes
Grb7, and Grb14. They are composed of an N-terminal
Proline-rich domain, a Ras Associating-like (RA) domain,
a Pleckstrin Homology (PH) domain, a phosphotyrosine
interaction region (PIR, BPS) and a C-terminal SH2
domain. The SH2 domains of Grb7, Grb10 and Grb14
preferentially bind to a different RTK. Grb10 has been
shown to interact with many different proteins,
including the insulin and IGF1 receptors,
platelet-derived growth factor (PDGF) receptor-beta,
Ret, Kit, Raf1 and MEK1, and Nedd4. In general SH2
domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket, allowing
proteins with SH2 domains to localize to tyrosine
phosphorylated sites.
Length = 108
Score = 27.7 bits (61), Expect = 2.2
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 102 ALCILLCRSQKIR-LDYWPLTRDSIIYMVAVLILAFSLQDGKVMWYEALSMVFFY 155
A + LC QKI+ P D + FSL DG + + + +V FY
Sbjct: 42 AFVLTLCHHQKIKNFQILPCEDDGQTF--------FSLDDGNTKFSDLIQLVDFY 88
>gnl|CDD|227417 COG5085, COG5085, Predicted membrane protein [Function unknown].
Length = 230
Score = 28.3 bits (63), Expect = 2.5
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 29 FLATVCD-AYFVPCIDIVCQKLELSNDVAGATLMASGTSSPELFINLIGTFITEGDVGTG 87
+L CD A VP I+ +C K + G + E+F ++I FI + V +
Sbjct: 135 YLINKCDPATRVPAIEELCSKWKQCMKNNGYRSVGYTKLIAEVFGDVIDAFIRKFSVRSS 194
Query: 88 TVVGSGVFNML 98
+ V L
Sbjct: 195 LFILIFVIGFL 205
>gnl|CDD|221771 pfam12787, EcsC, EcsC protein family. Proteins in this family are
related to EcsC from B. subtilis. This protein is found
in an operon with EcsA and EcsB which are components of
an ABC transport system. The function of this protein is
unknown.
Length = 242
Score = 28.3 bits (64), Expect = 3.0
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 54 DVAGATLMASGTSSPELFINLIGTFITEGDVGTGTVVGSGVFNMLA-VPALCILLCRS-Q 111
D+ L + E+ T EG GTG G G+ LA +P L + ++ Q
Sbjct: 73 DLKQLPLEEMDKLAREVINLYKKTAAVEG-AGTG--AG-GILLGLADIPLLLGIKLKTLQ 128
Query: 112 KIRLDYW--PLTRDSIIYMVAVLILAFSLQDGKVMWYEALS 150
+I L Y P ++ ++++ +L LAFS + + E LS
Sbjct: 129 EIALCYGYDPKDKEERLFILKILQLAFSDIEERQAILEELS 169
>gnl|CDD|165323 PHA03025, PHA03025, hypothetical protein; Provisional.
Length = 68
Score = 26.1 bits (57), Expect = 4.7
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 146 YEALSMVFFYYFYIIEK--AKIVVTSGYKIYRDEVQFYNQEDIGKSNPTNKAKEMEYM 201
+ + M + Y I K AK + KI + + + I K+ NK K ++ +
Sbjct: 8 CQGIDMTHYLYLKDIGKENAKKLAEICEKIKNNMIIIKLETTIRKNTIQNKDKPIDMI 65
>gnl|CDD|132792 cd06882, PX_p40phox, The phosphoinositide binding Phox Homology
domain of the p40phox subunit of NADPH oxidase. The PX
domain is a phosphoinositide binding module present in
many proteins with diverse functions such as cell
signaling, vesicular trafficking, protein sorting, and
lipid modification, among others. p40phox contains an
N-terminal PX domain, a central SH3 domain that binds
p47phox, and a C-terminal PB1 domain that interacts with
p67phox. It is a cytosolic subunit of the phagocytic
NADPH oxidase complex (also called Nox2 or gp91phox)
which plays a crucial role in the cellular response to
bacterial infection. NADPH oxidase catalyzes the
transfer of electrons from NADPH to oxygen during
phagocytosis forming superoxide and reactive oxygen
species. p40phox positively regulates NADPH oxidase in
both phosphatidylinositol-3-phosphate (PI3P)-dependent
and PI3P-independent manner. The PX domain is a
phospholipid-binding module involved in the membrane
targeting of proteins. The p40phox PX domain binds to
PI3P, an abundant lipid in phagosomal membranes, playing
an important role in the localization of NADPH oxidase.
The PX domain of p40phox is also involved in
protein-protein interaction.
Length = 123
Score = 27.0 bits (60), Expect = 5.1
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 154 FYYFYIIEKAKIVVTSGYKIYRDEVQFY 181
YY ++IE K S Y IYR QF+
Sbjct: 19 NYYVFVIE-VKTKGGSKYLIYRRYRQFF 45
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 27.8 bits (62), Expect = 5.6
Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 14/74 (18%)
Query: 3 TIMINFPFGFVGAIIFPTLI--------------TGYIFVFLATVCDAYFVPCIDIVCQK 48
+I+ PF + +++F ++ + +F+ T+ ++ I V +
Sbjct: 500 SIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKT 559
Query: 49 LELSNDVAGATLMA 62
L + A L+A
Sbjct: 560 LSEAMTPAAILLLA 573
>gnl|CDD|234717 PRK00293, dipZ, thiol:disulfide interchange protein precursor;
Provisional.
Length = 571
Score = 27.1 bits (61), Expect = 8.1
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 166 VVTSGYKIYRDEVQFY-NQEDIGKSN-PTNKAKEMEYMG 202
+ GY +YR +++ D+G+ P + E E+ G
Sbjct: 54 QIADGYYLYRKQIKITPEPADLGEPQLPAGEPHEDEFFG 92
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.141 0.430
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,335,912
Number of extensions: 1084792
Number of successful extensions: 1600
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1585
Number of HSP's successfully gapped: 55
Length of query: 219
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 126
Effective length of database: 6,812,680
Effective search space: 858397680
Effective search space used: 858397680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.2 bits)