RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11346
(219 letters)
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation
protein complex, sodium,calcium EX membrane protein;
HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii}
PDB: 3v5s_A*
Length = 320
Score = 61.5 bits (150), Expect = 2e-11
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 47 QKLELSNDVAGATLMASGTSSPELFINLIGTFITEGDVGTGTVVGSGVFNMLAVPALCIL 106
L++S+ V G TL+A GTS PEL ++L G + G V+GS + ++ A+ L
Sbjct: 191 LALDISDKVIGFTLVAFGTSLPELMVSLAAAKRNLGGMVLGNVIGSNIADIGGALAVGSL 250
Query: 107 LCRSQKIRLDYWPLTRDSIIYMVAVLILAFSLQDGKVMWYEALSMVFFYYFYII 160
+ + ++ L+L + K+ ++ + + Y I
Sbjct: 251 FMHLPAENVQMA-------VLVIMSLLLYLFAKYSKIGRWQGILFLALYIIAIA 297
Score = 59.6 bits (145), Expect = 7e-11
Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 45 VCQKLELSNDVAGATLMASGTSSPELFINLIGTFITEGDVGTGTVVGSGVFNMLAVPALC 104
+ + +SN V GAT+MA GTS PE+ + +++ + G +GS + N+ V L
Sbjct: 30 IARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIGLVLGLS 89
Query: 105 ILLCRSQKIRLDYWPLTRDSIIYMVAVLILAFSLQDGKVMWYEALSMVFFYYFYII 160
++ I +D L ++ ++Y++ V+ A + W + + ++ + Y+
Sbjct: 90 AIIS---PIIVD-KNLQKNILVYLLFVIFAAV-IGIDGFSWIDGVVLLILFIIYLR 140
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 2e-04
Identities = 22/170 (12%), Positives = 53/170 (31%), Gaps = 25/170 (14%)
Query: 30 LATVCDAYFVPCIDIVCQKLELSNDVAGATLMASGTSSPELFINLIGTFITEGDVGT--G 87
L V +A ++ C+ L + +++ T++ + T T +V +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSLLL 308
Query: 88 TVVGSGVF---------NMLAVPALCILLCRSQKIRLDYWP-LTRDSIIYMVAVLILAFS 137
+ N + ++ R D W + D + ++ +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 138 LQDGKVMWYEALSMVFFYYFYIIEKAKIVVTSG-YKIYRDEVQFYNQEDI 186
+ + M ++ LS VF A I + + +V + +
Sbjct: 368 PAEYRKM-FDRLS-VF------PPSAHI--PTILLSLIWFDVIKSDVMVV 407
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.11
Identities = 18/140 (12%), Positives = 32/140 (22%), Gaps = 56/140 (40%)
Query: 15 AIIFPTLITGYIFVFLATVCDAYFVPC----------IDIVCQKLELSNDVAGATLMASG 64
I P LI + + Y V + S + A +A
Sbjct: 235 PISCP-LI------GVIQLA-HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 65 TSSPELFINLIGTFITEGDVGTGTVVGSGVFNMLAVPALCILL---CRSQKI--RLDYWP 119
S F + A+ +L R + P
Sbjct: 287 DSWES-------------------------FFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 120 -LTRDSII-------YMVAV 131
+ DS+ M+++
Sbjct: 322 SILEDSLENNEGVPSPMLSI 341
Score = 29.2 bits (65), Expect = 1.2
Identities = 22/131 (16%), Positives = 38/131 (29%), Gaps = 54/131 (41%)
Query: 29 FLATVCDAYFVPCIDIVCQKLELSNDVAGATLMASGTSSPELFINLIGTFITEGDVGTGT 88
+L ++ P I ++ Q L++ V T G + EL L G T
Sbjct: 230 YLLSI--PISCPLIGVI-Q---LAHYVV--TAKLLGFTPGELRSYLKGA----------T 271
Query: 89 VVGSGVFNMLAVPALCILLCRSQKIRLDYWPLTRDSIIYMVAVLILAFSLQDGKVMWYEA 148
G+ V A+ I S W +S ++ +
Sbjct: 272 GHSQGL-----VTAVAIAETDS-------W----ES--------------------FFVS 295
Query: 149 LSMVFFYYFYI 159
+ F+I
Sbjct: 296 VRKAITVLFFI 306
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.12
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 47 QKLELSNDVAGATLMASGTSSPELFIN 73
+KL+ S L A S+P L I
Sbjct: 23 KKLQAS-----LKLYADD-SAPALAIK 43
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 0.85
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 8/42 (19%)
Query: 159 IIEKAKIVVTSGYKIYRDEVQFYNQEDIGKSNPTNKAKEMEY 200
EKAK + + E + K+ N+ + +
Sbjct: 112 WREKAKKDLEEWNQRQ--------SEQVEKNKINNRIADKAF 145
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 26.4 bits (59), Expect = 8.2
Identities = 4/24 (16%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 156 YFYIIEKAK-IVVTSGYKIYRDEV 178
+ ++ ++ SG + EV
Sbjct: 421 CYVYAGRSDDMLKVSGQYVSPVEV 444
>2ksf_A Sensor protein KDPD; methods development, histidine kinase
receptor, membrane domain, four-helical bundle,
cell-free synthesis, ATP- binding; NMR {Escherichia
coli}
Length = 107
Score = 25.2 bits (55), Expect = 9.2
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 97 MLAVPALCILLCRSQKIRLDYWPLTRDSIIYMVAVLILAFSLQDGKVMWYEALSMVFFYY 156
A+ A+ L+ + D ++Y++ V+++A + +++V F
Sbjct: 10 AAALSAVITLIAMQWLMAFD---AANLVMLYLLGVVVVALFYGRWPSVVATVINVVSFDL 66
Query: 157 FYI 159
F+I
Sbjct: 67 FFI 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.141 0.430
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,408,513
Number of extensions: 197091
Number of successful extensions: 406
Number of sequences better than 10.0: 1
Number of HSP's gapped: 401
Number of HSP's successfully gapped: 12
Length of query: 219
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 129
Effective length of database: 4,188,903
Effective search space: 540368487
Effective search space used: 540368487
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (24.9 bits)