Query psy11347
Match_columns 294
No_of_seqs 141 out of 1968
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 16:04:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3022|consensus 100.0 7.5E-48 1.6E-52 320.7 23.0 286 1-294 2-289 (300)
2 PRK11670 antiporter inner memb 100.0 2.8E-33 6E-38 252.6 21.9 243 42-294 102-347 (369)
3 COG2894 MinD Septum formation 100.0 2E-33 4.3E-38 226.8 13.1 225 46-294 1-243 (272)
4 CHL00175 minD septum-site dete 100.0 3.1E-32 6.8E-37 239.1 20.7 231 40-294 8-250 (281)
5 TIGR01969 minD_arch cell divis 100.0 1.6E-31 3.5E-36 230.7 18.8 219 48-294 1-228 (251)
6 TIGR01968 minD_bact septum sit 100.0 1.7E-30 3.7E-35 225.5 18.5 223 47-294 1-234 (261)
7 PRK10818 cell division inhibit 100.0 4E-30 8.8E-35 224.5 18.2 225 46-294 1-244 (270)
8 PRK13232 nifH nitrogenase redu 100.0 3.8E-30 8.3E-35 224.9 17.3 227 47-294 1-242 (273)
9 PRK13233 nifH nitrogenase redu 100.0 1.1E-29 2.5E-34 222.1 17.6 226 46-294 1-245 (275)
10 TIGR03371 cellulose_yhjQ cellu 100.0 1.3E-29 2.9E-34 218.2 17.3 226 47-294 1-239 (246)
11 PRK13235 nifH nitrogenase redu 100.0 2.3E-29 5E-34 220.1 17.2 225 47-294 1-244 (274)
12 cd02040 NifH NifH gene encodes 100.0 3.1E-29 6.7E-34 218.9 17.7 227 47-294 1-243 (270)
13 PRK13236 nitrogenase reductase 100.0 3.5E-29 7.6E-34 220.7 18.0 226 47-294 6-248 (296)
14 COG0455 flhG Antiactivator of 100.0 5.2E-29 1.1E-33 213.6 18.2 223 46-294 1-236 (262)
15 PRK13234 nifH nitrogenase redu 100.0 2.1E-29 4.6E-34 222.0 16.2 225 47-294 4-246 (295)
16 PF06564 YhjQ: YhjQ protein; 100.0 1.7E-29 3.7E-34 212.6 14.7 223 47-294 1-233 (243)
17 CHL00072 chlL photochlorophyll 100.0 1.3E-28 2.8E-33 216.0 19.8 218 50-294 3-241 (290)
18 PRK13231 nitrogenase reductase 100.0 7.9E-29 1.7E-33 215.6 16.1 226 47-294 2-236 (264)
19 PRK13185 chlL protochlorophyll 100.0 2.7E-28 5.8E-33 213.0 18.6 221 46-294 1-243 (270)
20 PRK13230 nitrogenase reductase 100.0 1.7E-28 3.7E-33 215.1 17.0 228 47-294 1-243 (279)
21 PRK10037 cell division protein 100.0 1.3E-28 2.8E-33 212.5 14.8 219 47-294 1-233 (250)
22 TIGR01287 nifH nitrogenase iro 100.0 5.2E-28 1.1E-32 211.7 17.4 226 48-294 1-242 (275)
23 TIGR01281 DPOR_bchL light-inde 100.0 1E-27 2.2E-32 209.1 17.9 218 49-294 2-241 (268)
24 PRK13869 plasmid-partitioning 100.0 2.5E-28 5.5E-33 223.3 14.5 226 46-291 120-382 (405)
25 cd02037 MRP-like MRP (Multiple 100.0 3.4E-27 7.3E-32 191.8 19.0 169 49-266 1-169 (169)
26 cd02032 Bchl_like This family 100.0 1.7E-27 3.7E-32 207.5 18.1 217 49-294 2-241 (267)
27 cd02036 MinD Bacterial cell di 100.0 1.8E-27 3.9E-32 194.9 16.5 177 49-289 1-179 (179)
28 TIGR03815 CpaE_hom_Actino heli 100.0 1E-26 2.2E-31 207.9 21.3 217 44-293 90-319 (322)
29 PHA02518 ParA-like protein; Pr 99.9 6.1E-27 1.3E-31 197.0 16.8 195 48-294 1-203 (211)
30 COG1192 Soj ATPases involved i 99.9 2.3E-27 5E-32 205.8 14.4 227 46-293 1-247 (259)
31 COG3640 CooC CO dehydrogenase 99.9 7.1E-26 1.5E-30 185.6 18.4 215 51-293 3-247 (255)
32 COG0489 Mrp ATPases involved i 99.9 8.2E-26 1.8E-30 195.4 19.7 202 45-270 55-263 (265)
33 TIGR03453 partition_RepA plasm 99.9 9.9E-27 2.1E-31 212.6 14.7 225 45-289 102-363 (387)
34 COG1149 MinD superfamily P-loo 99.9 1.1E-25 2.4E-30 188.4 18.8 221 47-292 1-276 (284)
35 cd02117 NifH_like This family 99.9 7.3E-26 1.6E-30 190.6 16.7 197 48-265 1-212 (212)
36 cd02033 BchX Chlorophyllide re 99.9 3.2E-25 7E-30 196.0 21.1 221 45-294 29-270 (329)
37 PRK13705 plasmid-partitioning 99.9 1.6E-26 3.6E-31 210.1 12.6 217 45-280 104-350 (388)
38 PHA02519 plasmid partition pro 99.9 5.1E-26 1.1E-30 206.5 14.0 216 46-280 105-350 (387)
39 TIGR02016 BchX chlorophyllide 99.9 7.9E-25 1.7E-29 192.6 16.5 221 48-294 1-246 (296)
40 cd03110 Fer4_NifH_child This p 99.9 3.3E-24 7.2E-29 175.8 16.8 179 49-263 1-179 (179)
41 TIGR01007 eps_fam capsular exo 99.9 8.2E-24 1.8E-28 177.1 15.1 168 47-228 17-192 (204)
42 PRK13849 putative crown gall t 99.9 6.1E-23 1.3E-27 174.2 18.5 187 47-280 1-194 (231)
43 TIGR03018 pepcterm_TyrKin exop 99.9 2.1E-23 4.6E-28 174.9 13.4 164 45-224 33-207 (207)
44 TIGR03029 EpsG chain length de 99.9 4E-23 8.7E-28 180.7 15.5 177 35-225 86-274 (274)
45 PF01656 CbiA: CobQ/CobB/MinD/ 99.9 2.1E-23 4.6E-28 173.0 9.8 188 50-270 1-195 (195)
46 PF00142 Fer4_NifH: 4Fe-4S iro 99.9 2.1E-22 4.5E-27 169.3 15.6 224 48-294 1-243 (273)
47 COG4963 CpaE Flp pilus assembl 99.9 7.2E-22 1.6E-26 173.4 17.3 221 45-293 102-338 (366)
48 COG1348 NifH Nitrogenase subun 99.9 3.2E-21 6.9E-26 157.5 16.8 226 47-294 1-244 (278)
49 TIGR01005 eps_transp_fam exopo 99.9 4E-21 8.7E-26 189.8 14.4 181 34-228 528-720 (754)
50 PRK11519 tyrosine kinase; Prov 99.8 1.6E-20 3.4E-25 183.9 15.7 180 34-227 508-699 (719)
51 PRK09841 cryptic autophosphory 99.8 2E-20 4.4E-25 183.3 15.8 179 35-227 514-704 (726)
52 cd02038 FleN-like FleN is a me 99.8 1.2E-20 2.5E-25 148.3 10.7 107 49-227 1-108 (139)
53 cd00550 ArsA_ATPase Oxyanion-t 99.8 1.7E-20 3.7E-25 161.9 10.8 176 50-229 2-202 (254)
54 cd02035 ArsA ArsA ATPase funct 99.8 1.8E-20 3.9E-25 158.3 9.9 167 50-228 1-182 (217)
55 cd03111 CpaE_like This protein 99.8 1.1E-19 2.3E-24 136.0 12.8 102 49-225 1-106 (106)
56 PF07015 VirC1: VirC1 protein; 99.8 3.5E-19 7.6E-24 148.0 15.0 185 47-278 1-192 (231)
57 PF09140 MipZ: ATPase MipZ; I 99.8 2.4E-19 5.3E-24 149.5 8.2 207 48-280 1-230 (261)
58 cd02042 ParA ParA and ParB of 99.8 4.3E-18 9.3E-23 127.0 12.7 99 49-224 1-104 (104)
59 KOG2825|consensus 99.8 1.2E-18 2.6E-23 143.9 9.8 227 33-263 4-305 (323)
60 PF02374 ArsA_ATPase: Anion-tr 99.7 4.6E-17 1E-21 143.7 10.0 170 49-228 2-248 (305)
61 PF13614 AAA_31: AAA domain; P 99.7 1.1E-16 2.4E-21 128.2 6.9 140 48-202 1-156 (157)
62 COG0003 ArsA Predicted ATPase 99.6 2.3E-15 4.9E-20 132.7 10.8 176 48-229 2-249 (322)
63 cd03114 ArgK-like The function 99.5 1.8E-13 3.9E-18 108.4 14.2 143 52-227 3-148 (148)
64 TIGR00064 ftsY signal recognit 99.5 1.4E-12 3.1E-17 113.4 15.6 168 47-259 72-248 (272)
65 PRK13886 conjugal transfer pro 99.4 7.4E-12 1.6E-16 105.9 15.8 148 46-227 1-156 (241)
66 PRK00090 bioD dithiobiotin syn 99.4 1.4E-12 3.1E-17 110.5 10.6 196 50-265 2-202 (222)
67 cd03115 SRP The signal recogni 99.4 2.1E-11 4.7E-16 99.2 17.0 166 50-259 2-170 (173)
68 PRK01077 cobyrinic acid a,c-di 99.4 2.2E-11 4.9E-16 113.5 18.8 173 46-269 2-185 (451)
69 PRK10867 signal recognition pa 99.4 7.2E-12 1.6E-16 115.0 14.3 168 48-259 100-271 (433)
70 cd02034 CooC The accessory pro 99.4 2.2E-12 4.8E-17 97.7 8.2 113 51-193 2-115 (116)
71 COG0132 BioD Dethiobiotin synt 99.4 1.7E-11 3.8E-16 102.2 13.4 202 46-268 1-207 (223)
72 cd01983 Fer4_NifH The Fer4_Nif 99.4 1.3E-11 2.8E-16 90.0 11.2 95 51-224 2-99 (99)
73 PRK10416 signal recognition pa 99.3 5.6E-11 1.2E-15 105.5 15.9 168 47-259 114-290 (318)
74 TIGR00959 ffh signal recogniti 99.3 3.6E-11 7.8E-16 110.4 14.7 170 47-259 98-270 (428)
75 PRK12374 putative dithiobiotin 99.3 7.1E-11 1.5E-15 100.7 15.2 200 46-268 1-206 (231)
76 TIGR00347 bioD dethiobiotin sy 99.3 1.5E-11 3.2E-16 99.5 8.2 155 52-224 2-166 (166)
77 TIGR01425 SRP54_euk signal rec 99.3 3.5E-10 7.5E-15 103.4 17.3 148 49-228 101-251 (429)
78 PRK11889 flhF flagellar biosyn 99.3 3E-10 6.5E-15 101.9 16.2 174 47-268 241-422 (436)
79 PRK13768 GTPase; Provisional 99.3 4.9E-11 1.1E-15 102.9 11.0 44 46-92 1-44 (253)
80 cd03109 DTBS Dethiobiotin synt 99.2 1.6E-10 3.4E-15 90.0 12.5 126 51-263 3-134 (134)
81 PF10609 ParA: ParA/MinD ATPas 99.2 3.4E-11 7.3E-16 83.7 7.4 78 161-241 2-79 (81)
82 PF13500 AAA_26: AAA domain; P 99.2 8.4E-11 1.8E-15 97.9 11.0 187 48-269 1-196 (199)
83 PRK00771 signal recognition pa 99.2 3.5E-10 7.7E-15 104.1 15.7 164 48-259 95-263 (437)
84 PRK12726 flagellar biosynthesi 99.2 6.2E-10 1.3E-14 99.5 16.4 165 47-259 206-373 (407)
85 TIGR00313 cobQ cobyric acid sy 99.2 2.7E-10 5.9E-15 106.6 14.1 204 50-268 1-227 (475)
86 COG1797 CobB Cobyrinic acid a, 99.2 2.1E-10 4.6E-15 102.9 11.8 169 49-268 2-182 (451)
87 PRK00784 cobyric acid synthase 99.2 4.8E-10 1E-14 105.6 14.3 203 46-268 1-230 (488)
88 PRK05632 phosphate acetyltrans 99.1 8.1E-10 1.8E-14 108.0 13.9 178 46-269 1-200 (684)
89 PRK12727 flagellar biosynthesi 99.1 2.3E-09 4.9E-14 99.8 15.6 142 47-227 350-495 (559)
90 COG1703 ArgK Putative periplas 99.1 2.1E-09 4.5E-14 92.2 13.2 169 27-227 29-200 (323)
91 PRK14974 cell division protein 99.1 4.9E-09 1.1E-13 93.5 15.5 168 48-259 140-310 (336)
92 TIGR00750 lao LAO/AO transport 99.1 5.1E-09 1.1E-13 92.7 14.8 149 47-228 34-184 (300)
93 PRK12724 flagellar biosynthesi 99.0 9.4E-09 2E-13 93.4 15.7 171 48-269 223-405 (432)
94 TIGR00345 arsA arsenite-activa 99.0 1.8E-09 3.9E-14 94.8 10.6 43 186-228 188-230 (284)
95 TIGR00379 cobB cobyrinic acid 99.0 1.9E-08 4.1E-13 93.8 17.6 170 50-269 2-182 (449)
96 PRK09435 membrane ATPase/prote 99.0 9.4E-09 2E-13 91.5 14.3 148 48-228 56-206 (332)
97 PRK06278 cobyrinic acid a,c-di 99.0 4.2E-09 9.1E-14 97.9 12.5 167 46-263 237-418 (476)
98 PF00448 SRP54: SRP54-type pro 99.0 1.3E-08 2.8E-13 84.4 14.2 167 48-259 2-171 (196)
99 PRK05703 flhF flagellar biosyn 99.0 1.2E-08 2.5E-13 94.3 14.3 164 47-259 221-388 (424)
100 COG0541 Ffh Signal recognition 98.9 1.8E-08 3.9E-13 90.7 13.5 150 47-228 99-251 (451)
101 PRK12723 flagellar biosynthesi 98.9 4.4E-08 9.6E-13 89.0 16.1 170 49-266 175-355 (388)
102 PF03308 ArgK: ArgK protein; 98.9 1.9E-09 4.2E-14 91.2 6.5 149 46-227 28-178 (266)
103 PRK06731 flhF flagellar biosyn 98.9 8.8E-08 1.9E-12 83.0 16.0 173 48-268 76-256 (270)
104 PRK13896 cobyrinic acid a,c-di 98.9 4E-08 8.7E-13 90.5 14.5 172 47-268 1-178 (433)
105 PRK13505 formate--tetrahydrofo 98.8 3.1E-08 6.7E-13 92.0 11.4 85 199-294 356-454 (557)
106 PRK14723 flhF flagellar biosyn 98.8 1.7E-07 3.7E-12 91.2 16.0 170 48-265 186-365 (767)
107 PRK14493 putative bifunctional 98.7 5.3E-08 1.1E-12 84.7 9.0 124 47-201 1-127 (274)
108 PRK14722 flhF flagellar biosyn 98.6 2.9E-06 6.4E-11 76.7 15.2 173 49-268 138-326 (374)
109 KOG0781|consensus 98.6 1.3E-06 2.9E-11 79.2 12.8 168 38-228 368-542 (587)
110 TIGR03499 FlhF flagellar biosy 98.6 1.8E-07 3.8E-12 82.1 7.1 41 47-90 194-236 (282)
111 COG1492 CobQ Cobyric acid synt 98.5 7.4E-08 1.6E-12 88.3 4.7 206 48-270 2-232 (486)
112 COG1419 FlhF Flagellar GTP-bin 98.5 3.4E-06 7.4E-11 76.0 14.5 144 48-227 203-349 (407)
113 KOG0780|consensus 98.5 3.7E-07 8E-12 80.8 8.2 146 47-228 101-252 (483)
114 PRK06995 flhF flagellar biosyn 98.5 2.8E-06 6E-11 79.2 14.3 42 47-90 256-298 (484)
115 COG0552 FtsY Signal recognitio 98.4 5.6E-06 1.2E-10 72.6 12.2 166 47-259 139-315 (340)
116 COG0529 CysC Adenylylsulfate k 98.2 1.4E-06 3E-11 69.5 4.3 119 34-168 9-130 (197)
117 cd04170 EF-G_bact Elongation f 98.1 2.1E-05 4.5E-10 68.6 10.1 93 160-266 64-157 (268)
118 PRK14721 flhF flagellar biosyn 98.1 0.00021 4.5E-09 65.8 16.3 145 47-228 191-338 (420)
119 cd01884 EF_Tu EF-Tu subfamily. 98.1 3.9E-05 8.5E-10 63.6 10.4 66 160-228 65-130 (195)
120 KOG1532|consensus 98.1 1.4E-05 3E-10 68.0 7.4 166 47-228 18-193 (366)
121 PLN02974 adenosylmethionine-8- 98.0 0.00019 4.2E-09 71.4 16.0 89 159-265 184-280 (817)
122 COG1126 GlnQ ABC-type polar am 98.0 3.7E-06 8.1E-11 69.3 2.9 138 48-196 28-195 (240)
123 cd04169 RF3 RF3 subfamily. Pe 98.0 0.00014 3E-09 63.3 12.8 91 160-264 71-162 (267)
124 COG1136 SalX ABC-type antimicr 98.0 3.4E-05 7.4E-10 64.8 8.3 75 46-122 29-106 (226)
125 KOG0635|consensus 98.0 2.3E-05 5E-10 60.8 6.1 76 31-108 14-89 (207)
126 cd01886 EF-G Elongation factor 97.9 0.0001 2.2E-09 64.2 10.9 92 160-265 64-156 (270)
127 PF03029 ATP_bind_1: Conserved 97.9 2.2E-06 4.8E-11 73.2 -0.2 45 54-100 2-46 (238)
128 COG1341 Predicted GTPase or GT 97.9 0.00015 3.2E-09 65.3 10.8 43 47-92 73-115 (398)
129 cd04168 TetM_like Tet(M)-like 97.8 0.00024 5.1E-09 60.8 11.3 86 160-259 64-149 (237)
130 cd01120 RecA-like_NTPases RecA 97.8 0.00014 3E-09 57.7 9.1 38 51-90 2-39 (165)
131 COG1125 OpuBA ABC-type proline 97.8 4.3E-05 9.4E-10 64.6 6.3 79 44-125 23-101 (309)
132 PRK10751 molybdopterin-guanine 97.8 0.00016 3.5E-09 58.4 9.0 41 47-89 5-45 (173)
133 COG2884 FtsE Predicted ATPase 97.8 0.00013 2.8E-09 59.2 8.1 75 45-121 25-101 (223)
134 PF03205 MobB: Molybdopterin g 97.8 0.00011 2.3E-09 57.6 7.3 40 48-90 1-41 (140)
135 KOG1533|consensus 97.8 1.9E-05 4.1E-10 65.7 3.0 49 52-102 6-54 (290)
136 cd00881 GTP_translation_factor 97.7 0.00045 9.7E-09 56.2 10.8 65 160-228 62-126 (189)
137 cd04166 CysN_ATPS CysN_ATPS su 97.7 0.00056 1.2E-08 57.3 11.4 66 160-228 77-142 (208)
138 COG1763 MobB Molybdopterin-gua 97.7 0.00037 8E-09 55.6 9.4 41 46-89 1-41 (161)
139 TIGR00176 mobB molybdopterin-g 97.7 0.00021 4.5E-09 57.0 8.0 37 50-89 2-38 (155)
140 PLN03127 Elongation factor Tu; 97.7 0.00075 1.6E-08 63.1 12.4 66 160-228 124-189 (447)
141 PRK14494 putative molybdopteri 97.6 0.00025 5.4E-09 60.0 8.1 38 47-87 1-38 (229)
142 COG0857 Pta BioD-like N-termin 97.6 0.00038 8.3E-09 62.5 9.7 192 46-268 1-206 (354)
143 PRK08533 flagellar accessory p 97.6 0.00039 8.4E-09 59.2 9.4 41 48-90 24-64 (230)
144 PRK04296 thymidine kinase; Pro 97.6 0.0014 3.1E-08 54.0 12.4 36 48-85 2-37 (190)
145 cd03116 MobB Molybdenum is an 97.6 0.00031 6.8E-09 56.1 8.1 41 47-90 1-41 (159)
146 PRK00741 prfC peptide chain re 97.6 0.00096 2.1E-08 63.6 12.6 86 160-259 79-164 (526)
147 PF00009 GTP_EFTU: Elongation 97.6 0.00023 4.9E-09 58.6 7.4 66 159-228 69-134 (188)
148 COG1127 Ttg2A ABC-type transpo 97.6 0.00026 5.7E-09 59.4 7.4 73 47-122 34-108 (263)
149 cd01124 KaiC KaiC is a circadi 97.6 0.00033 7.2E-09 57.2 8.0 38 51-90 2-39 (187)
150 PRK00049 elongation factor Tu; 97.6 0.00057 1.2E-08 63.0 10.0 66 160-228 75-140 (396)
151 TIGR00503 prfC peptide chain r 97.6 0.0012 2.6E-08 63.0 12.4 85 160-258 80-164 (527)
152 PRK06067 flagellar accessory p 97.5 0.0009 2E-08 57.0 10.3 54 33-88 8-63 (234)
153 cd03112 CobW_like The function 97.5 0.0043 9.4E-08 49.5 13.5 35 50-88 2-36 (158)
154 PTZ00141 elongation factor 1- 97.5 0.00052 1.1E-08 64.2 8.8 65 160-227 85-156 (446)
155 PHA02542 41 41 helicase; Provi 97.5 8.1E-05 1.8E-09 69.8 3.4 57 33-91 173-231 (473)
156 CHL00071 tufA elongation facto 97.5 0.0013 2.7E-08 61.0 11.2 66 160-228 75-140 (409)
157 COG1131 CcmA ABC-type multidru 97.5 0.00015 3.4E-09 63.9 4.9 42 47-90 30-71 (293)
158 PRK12736 elongation factor Tu; 97.5 0.00079 1.7E-08 62.1 9.8 66 160-228 75-140 (394)
159 PLN03126 Elongation factor Tu; 97.5 0.0011 2.4E-08 62.4 10.8 66 160-228 144-209 (478)
160 KOG1534|consensus 97.5 0.00015 3.3E-09 59.5 4.2 43 46-90 1-43 (273)
161 PRK14495 putative molybdopteri 97.4 0.00075 1.6E-08 61.9 9.1 39 47-88 1-39 (452)
162 COG1120 FepC ABC-type cobalami 97.4 0.00059 1.3E-08 58.6 7.6 42 47-90 27-68 (258)
163 PRK12735 elongation factor Tu; 97.4 0.0016 3.5E-08 60.0 11.0 66 160-228 75-140 (396)
164 PF01583 APS_kinase: Adenylyls 97.4 0.00015 3.2E-09 57.6 3.5 43 49-93 3-45 (156)
165 PRK00007 elongation factor G; 97.4 0.0019 4.1E-08 63.9 12.0 91 160-264 75-166 (693)
166 PF02421 FeoB_N: Ferrous iron 97.4 0.0014 3.1E-08 52.0 9.2 91 160-262 47-142 (156)
167 cd04165 GTPBP1_like GTPBP1-lik 97.4 0.0026 5.6E-08 53.9 11.2 67 160-228 84-150 (224)
168 TIGR00485 EF-Tu translation el 97.4 0.001 2.2E-08 61.3 9.2 66 160-228 75-140 (394)
169 cd03230 ABC_DR_subfamily_A Thi 97.4 0.00086 1.9E-08 54.4 7.7 39 47-87 25-63 (173)
170 cd04167 Snu114p Snu114p subfam 97.4 0.0017 3.7E-08 54.5 9.7 65 160-228 71-135 (213)
171 COG0410 LivF ABC-type branched 97.3 0.00046 1E-08 57.6 5.9 72 49-122 30-101 (237)
172 cd03229 ABC_Class3 This class 97.3 0.0013 2.8E-08 53.6 8.5 38 48-87 26-63 (178)
173 cd03215 ABC_Carb_Monos_II This 97.3 0.00071 1.5E-08 55.3 6.9 40 47-88 25-64 (182)
174 smart00382 AAA ATPases associa 97.3 0.0013 2.8E-08 50.2 8.0 39 50-90 4-42 (148)
175 PRK12739 elongation factor G; 97.3 0.0013 2.8E-08 65.0 9.8 90 160-263 73-163 (691)
176 PRK05124 cysN sulfate adenylyl 97.3 0.00069 1.5E-08 63.8 7.5 66 160-228 107-172 (474)
177 KOG2749|consensus 97.3 0.00095 2.1E-08 59.0 7.4 44 47-93 103-146 (415)
178 cd03216 ABC_Carb_Monos_I This 97.3 0.002 4.2E-08 51.8 8.8 40 47-88 25-64 (163)
179 PRK03846 adenylylsulfate kinas 97.3 0.00075 1.6E-08 56.0 6.5 48 40-89 16-63 (198)
180 TIGR02034 CysN sulfate adenyly 97.3 0.00099 2.1E-08 61.6 7.9 66 160-228 80-145 (406)
181 COG3840 ThiQ ABC-type thiamine 97.3 0.00097 2.1E-08 53.9 6.7 39 50-90 27-65 (231)
182 PRK12740 elongation factor G; 97.3 0.0022 4.8E-08 63.2 10.7 91 160-264 60-151 (668)
183 cd00983 recA RecA is a bacter 97.3 0.0017 3.6E-08 57.9 8.8 54 33-88 37-93 (325)
184 COG3839 MalK ABC-type sugar tr 97.3 0.00042 9.2E-09 61.8 5.0 71 47-122 28-98 (338)
185 cd00561 CobA_CobO_BtuR ATP:cor 97.2 0.0047 1E-07 49.2 10.5 30 55-86 9-38 (159)
186 cd01394 radB RadB. The archaea 97.2 0.00085 1.8E-08 56.5 6.6 53 35-89 4-58 (218)
187 COG1066 Sms Predicted ATP-depe 97.2 0.0036 7.7E-08 56.7 10.5 50 36-88 79-130 (456)
188 PRK07667 uridine kinase; Provi 97.2 0.00065 1.4E-08 56.2 5.4 40 48-89 17-56 (193)
189 COG1116 TauB ABC-type nitrate/ 97.2 0.0026 5.6E-08 54.0 8.8 38 48-87 29-66 (248)
190 PRK00889 adenylylsulfate kinas 97.2 0.00067 1.4E-08 55.1 5.3 38 50-89 6-43 (175)
191 COG1618 Predicted nucleotide k 97.2 0.0021 4.5E-08 50.8 7.6 36 46-84 4-39 (179)
192 PRK05595 replicative DNA helic 97.2 0.00029 6.2E-09 66.0 3.4 57 33-90 185-242 (444)
193 cd00984 DnaB_C DnaB helicase C 97.2 0.00023 5E-09 60.9 2.6 42 47-90 12-54 (242)
194 cd03224 ABC_TM1139_LivF_branch 97.2 0.00098 2.1E-08 56.2 6.4 40 47-88 25-64 (222)
195 PLN00043 elongation factor 1-a 97.2 0.0017 3.8E-08 60.7 8.5 65 160-227 85-156 (447)
196 PRK00089 era GTPase Era; Revie 97.2 0.0031 6.8E-08 55.6 9.8 66 160-228 53-125 (292)
197 cd01125 repA Hexameric Replica 97.2 0.0022 4.7E-08 54.9 8.3 42 49-90 2-53 (239)
198 COG1122 CbiO ABC-type cobalt t 97.2 0.00075 1.6E-08 57.5 5.3 38 50-89 32-69 (235)
199 TIGR02012 tigrfam_recA protein 97.1 0.0027 5.8E-08 56.5 8.8 54 33-88 37-93 (321)
200 PF02492 cobW: CobW/HypB/UreG, 97.1 0.0084 1.8E-07 48.8 11.1 144 50-228 2-153 (178)
201 cd03218 ABC_YhbG The ABC trans 97.1 0.00053 1.2E-08 58.3 4.2 39 47-87 25-63 (232)
202 TIGR00490 aEF-2 translation el 97.1 0.0029 6.3E-08 62.8 9.9 65 160-228 86-150 (720)
203 cd04163 Era Era subfamily. Er 97.1 0.015 3.2E-07 45.8 12.3 65 160-227 51-122 (168)
204 cd01121 Sms Sms (bacterial rad 97.1 0.0031 6.7E-08 57.5 9.1 53 34-88 66-120 (372)
205 PRK10218 GTP-binding protein; 97.1 0.013 2.8E-07 56.8 13.7 65 160-228 68-132 (607)
206 TIGR00073 hypB hydrogenase acc 97.1 0.0078 1.7E-07 50.3 10.9 46 41-89 15-60 (207)
207 COG1121 ZnuC ABC-type Mn/Zn tr 97.1 0.0014 3.1E-08 56.0 6.4 38 49-88 31-68 (254)
208 cd01887 IF2_eIF5B IF2/eIF5B (i 97.1 0.013 2.7E-07 46.7 11.6 65 160-228 50-114 (168)
209 TIGR03878 thermo_KaiC_2 KaiC d 97.1 0.0013 2.7E-08 57.1 6.1 40 47-88 35-74 (259)
210 cd01883 EF1_alpha Eukaryotic e 97.1 0.0019 4E-08 54.6 7.0 66 160-228 77-149 (219)
211 cd03246 ABCC_Protease_Secretio 97.1 0.0039 8.5E-08 50.5 8.6 39 47-87 27-65 (173)
212 PRK06696 uridine kinase; Valid 97.1 0.0014 2.9E-08 55.6 6.1 42 47-90 21-62 (223)
213 TIGR01394 TypA_BipA GTP-bindin 97.1 0.0021 4.6E-08 62.2 8.0 65 160-228 64-128 (594)
214 PRK05986 cob(I)alamin adenolsy 97.0 0.0042 9E-08 50.9 8.4 38 47-86 21-58 (191)
215 TIGR03600 phage_DnaB phage rep 97.0 0.00067 1.5E-08 63.1 4.3 57 33-90 178-235 (421)
216 cd03256 ABC_PhnC_transporter A 97.0 0.0019 4E-08 55.2 6.8 40 47-88 26-65 (241)
217 cd00477 FTHFS Formyltetrahydro 97.0 0.0011 2.3E-08 61.6 5.5 52 46-102 37-91 (524)
218 COG1159 Era GTPase [General fu 97.0 0.0075 1.6E-07 52.4 10.3 67 159-228 53-126 (298)
219 PRK09361 radB DNA repair and r 97.0 0.0017 3.7E-08 54.9 6.4 52 34-87 7-60 (225)
220 COG4181 Predicted ABC-type tra 97.0 0.0078 1.7E-07 48.3 9.4 73 47-122 36-111 (228)
221 PRK10463 hydrogenase nickel in 97.0 0.006 1.3E-07 53.4 9.7 48 39-89 95-142 (290)
222 PRK09165 replicative DNA helic 97.0 0.00073 1.6E-08 64.0 4.3 58 33-90 201-272 (497)
223 PRK11823 DNA repair protein Ra 97.0 0.0045 9.7E-08 57.9 9.5 53 34-88 64-118 (446)
224 cd03264 ABC_drug_resistance_li 97.0 0.00073 1.6E-08 56.6 3.8 37 50-88 27-63 (211)
225 TIGR00484 EF-G translation elo 97.0 0.0075 1.6E-07 59.7 11.2 65 160-228 75-139 (689)
226 cd03261 ABC_Org_Solvent_Resist 97.0 0.0014 3E-08 55.9 5.4 40 47-88 25-64 (235)
227 TIGR03411 urea_trans_UrtD urea 97.0 0.003 6.6E-08 54.0 7.5 40 47-88 27-66 (242)
228 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.0 0.0008 1.7E-08 56.6 3.8 40 47-88 29-68 (218)
229 cd03219 ABC_Mj1267_LivG_branch 97.0 0.0012 2.5E-08 56.4 4.8 40 47-88 25-64 (236)
230 TIGR00960 3a0501s02 Type II (G 96.9 0.00068 1.5E-08 57.0 3.3 40 47-88 28-67 (216)
231 cd01885 EF2 EF2 (for archaea a 96.9 0.0078 1.7E-07 50.9 9.6 66 159-228 72-137 (222)
232 PRK13506 formate--tetrahydrofo 96.9 0.0018 4E-08 60.7 6.1 52 46-102 53-107 (578)
233 COG2874 FlaH Predicted ATPases 96.9 0.0064 1.4E-07 50.4 8.5 117 37-169 15-133 (235)
234 cd03258 ABC_MetN_methionine_tr 96.9 0.0009 2E-08 56.9 3.8 40 47-88 30-69 (233)
235 cd01131 PilT Pilus retraction 96.9 0.024 5.2E-07 47.0 12.2 35 50-86 3-38 (198)
236 PRK08760 replicative DNA helic 96.9 0.0005 1.1E-08 64.8 2.3 57 33-90 213-270 (476)
237 TIGR02315 ABC_phnC phosphonate 96.9 0.0029 6.2E-08 54.2 6.7 40 47-88 27-66 (243)
238 TIGR00708 cobA cob(I)alamin ad 96.9 0.0035 7.5E-08 50.6 6.7 34 50-86 8-41 (173)
239 PF06745 KaiC: KaiC; InterPro 96.9 0.0013 2.9E-08 55.7 4.6 53 35-89 4-59 (226)
240 cd03298 ABC_ThiQ_thiamine_tran 96.9 0.0029 6.2E-08 53.0 6.5 44 43-88 19-62 (211)
241 cd02028 UMPK_like Uridine mono 96.9 0.0013 2.8E-08 53.7 4.3 37 51-89 2-38 (179)
242 PRK10895 lipopolysaccharide AB 96.9 0.0022 4.7E-08 54.9 5.9 40 47-88 28-67 (241)
243 PRK11153 metN DL-methionine tr 96.9 0.001 2.3E-08 60.1 4.0 41 47-89 30-70 (343)
244 PRK15439 autoinducer 2 ABC tra 96.9 0.0036 7.9E-08 59.7 7.9 40 47-88 36-75 (510)
245 PF01926 MMR_HSR1: 50S ribosom 96.9 0.047 1E-06 40.7 12.6 62 160-225 47-116 (116)
246 cd02027 APSK Adenosine 5'-phos 96.9 0.0013 2.8E-08 52.0 4.1 37 51-89 2-38 (149)
247 PRK05506 bifunctional sulfate 96.9 0.0057 1.2E-07 59.9 9.3 168 36-263 12-200 (632)
248 cd03266 ABC_NatA_sodium_export 96.9 0.00091 2E-08 56.3 3.4 40 47-88 30-69 (218)
249 cd03228 ABCC_MRP_Like The MRP 96.9 0.0067 1.4E-07 49.0 8.3 38 47-86 27-64 (171)
250 PRK00093 GTP-binding protein D 96.9 0.0056 1.2E-07 57.2 9.0 65 160-227 49-120 (435)
251 cd04171 SelB SelB subfamily. 96.9 0.0081 1.8E-07 47.5 8.7 66 160-228 51-116 (164)
252 COG2403 Predicted GTPase [Gene 96.9 0.0049 1.1E-07 54.9 7.8 39 46-86 125-163 (449)
253 TIGR02655 circ_KaiC circadian 96.8 0.0038 8.3E-08 59.1 7.7 55 33-89 246-302 (484)
254 cd01890 LepA LepA subfamily. 96.8 0.029 6.4E-07 45.1 12.1 64 160-228 67-131 (179)
255 TIGR00416 sms DNA repair prote 96.8 0.0064 1.4E-07 57.0 9.1 53 34-88 78-132 (454)
256 TIGR03797 NHPM_micro_ABC2 NHPM 96.8 0.0072 1.6E-07 59.8 9.9 41 47-90 479-519 (686)
257 cd01891 TypA_BipA TypA (tyrosi 96.8 0.0094 2E-07 49.1 9.2 65 160-228 65-129 (194)
258 PRK13537 nodulation ABC transp 96.8 0.00092 2E-08 59.4 3.3 38 50-89 35-72 (306)
259 cd01894 EngA1 EngA1 subfamily. 96.8 0.0077 1.7E-07 47.2 8.2 66 160-228 45-117 (157)
260 cd03259 ABC_Carb_Solutes_like 96.8 0.0014 2.9E-08 55.0 4.1 40 47-88 25-64 (213)
261 PRK11629 lolD lipoprotein tran 96.8 0.0017 3.6E-08 55.3 4.6 40 47-88 34-73 (233)
262 TIGR02673 FtsE cell division A 96.8 0.0013 2.8E-08 55.2 3.9 40 47-88 27-66 (214)
263 TIGR00665 DnaB replicative DNA 96.8 0.0013 2.9E-08 61.3 4.3 57 33-90 179-236 (434)
264 PRK11176 lipid transporter ATP 96.8 0.0025 5.5E-08 61.7 6.4 40 47-89 369-408 (582)
265 PRK14491 putative bifunctional 96.8 0.0065 1.4E-07 58.9 9.0 40 47-89 10-49 (597)
266 cd03263 ABC_subfamily_A The AB 96.8 0.0013 2.8E-08 55.4 3.9 40 47-88 27-66 (220)
267 TIGR01188 drrA daunorubicin re 96.8 0.0011 2.4E-08 58.8 3.6 40 48-89 19-58 (302)
268 PRK09302 circadian clock prote 96.8 0.0058 1.3E-07 58.3 8.7 56 33-90 14-72 (509)
269 PF13481 AAA_25: AAA domain; P 96.8 0.0021 4.6E-08 52.8 5.0 41 48-90 32-82 (193)
270 cd03113 CTGs CTP synthetase (C 96.8 0.054 1.2E-06 46.0 13.2 193 55-265 9-238 (255)
271 PRK11300 livG leucine/isoleuci 96.8 0.0042 9.1E-08 53.6 7.0 41 47-89 30-70 (255)
272 PRK14489 putative bifunctional 96.8 0.0094 2E-07 54.4 9.5 41 46-89 204-244 (366)
273 PRK13536 nodulation factor exp 96.8 0.0011 2.4E-08 59.8 3.5 39 49-89 68-106 (340)
274 PRK05973 replicative DNA helic 96.8 0.0022 4.8E-08 54.6 5.0 43 46-90 62-104 (237)
275 PRK13351 elongation factor G; 96.8 0.015 3.2E-07 57.7 11.5 86 160-259 73-158 (687)
276 cd03301 ABC_MalK_N The N-termi 96.8 0.0015 3.3E-08 54.7 3.9 40 47-88 25-64 (213)
277 cd01882 BMS1 Bms1. Bms1 is an 96.8 0.021 4.5E-07 48.4 10.9 63 160-228 83-145 (225)
278 PRK08233 hypothetical protein; 96.7 0.0019 4.1E-08 52.5 4.3 36 49-88 4-39 (182)
279 cd03292 ABC_FtsE_transporter F 96.7 0.0013 2.8E-08 55.2 3.3 40 47-88 26-65 (214)
280 cd03247 ABCC_cytochrome_bd The 96.7 0.0053 1.1E-07 50.0 6.9 37 47-85 27-63 (178)
281 cd01393 recA_like RecA is a b 96.7 0.01 2.2E-07 50.0 8.9 53 35-89 4-64 (226)
282 PRK13549 xylose transporter AT 96.7 0.0051 1.1E-07 58.6 7.8 40 47-88 30-71 (506)
283 PRK10790 putative multidrug tr 96.7 0.003 6.4E-08 61.4 6.2 40 47-89 367-406 (592)
284 cd03269 ABC_putative_ATPase Th 96.7 0.0014 3.1E-08 54.8 3.5 38 47-86 25-62 (210)
285 TIGR03877 thermo_KaiC_1 KaiC d 96.7 0.009 2E-07 51.0 8.3 54 35-90 6-61 (237)
286 PRK07952 DNA replication prote 96.7 0.0022 4.7E-08 55.0 4.4 35 50-86 101-135 (244)
287 PRK12317 elongation factor 1-a 96.7 0.0067 1.4E-07 56.5 8.1 66 160-228 84-151 (425)
288 TIGR01193 bacteriocin_ABC ABC- 96.7 0.0026 5.6E-08 63.2 5.6 40 47-89 500-539 (708)
289 PRK15453 phosphoribulokinase; 96.7 0.003 6.5E-08 54.9 5.3 41 47-90 5-45 (290)
290 TIGR02237 recomb_radB DNA repa 96.7 0.0032 6.9E-08 52.6 5.4 40 47-88 11-50 (209)
291 PRK10982 galactose/methyl gala 96.7 0.0074 1.6E-07 57.3 8.5 40 47-88 23-62 (491)
292 PRK11248 tauB taurine transpor 96.7 0.0027 5.9E-08 54.9 5.0 40 47-88 26-65 (255)
293 COG1117 PstB ABC-type phosphat 96.7 0.0047 1E-07 51.2 6.0 44 47-92 32-80 (253)
294 TIGR02203 MsbA_lipidA lipid A 96.7 0.003 6.6E-08 61.0 5.8 41 47-89 357-397 (571)
295 COG3842 PotA ABC-type spermidi 96.7 0.0022 4.9E-08 57.5 4.5 71 47-122 30-100 (352)
296 TIGR01186 proV glycine betaine 96.7 0.0015 3.2E-08 59.4 3.5 42 47-90 18-59 (363)
297 cd04110 Rab35 Rab35 subfamily. 96.7 0.046 1E-06 45.2 12.2 66 160-228 55-122 (199)
298 TIGR03410 urea_trans_UrtE urea 96.7 0.0027 5.8E-08 53.9 4.8 40 47-88 25-64 (230)
299 TIGR03864 PQQ_ABC_ATP ABC tran 96.7 0.0021 4.6E-08 54.8 4.1 40 47-88 26-65 (236)
300 cd03265 ABC_DrrA DrrA is the A 96.7 0.0018 3.9E-08 54.6 3.7 40 47-88 25-64 (220)
301 cd03226 ABC_cobalt_CbiO_domain 96.6 0.0063 1.4E-07 50.6 6.9 40 47-88 25-64 (205)
302 PRK10070 glycine betaine trans 96.6 0.0031 6.6E-08 58.1 5.3 41 47-89 53-93 (400)
303 PRK10908 cell division protein 96.6 0.0019 4.2E-08 54.5 3.8 40 47-88 27-66 (222)
304 cd03293 ABC_NrtD_SsuB_transpor 96.6 0.0019 4.2E-08 54.4 3.7 39 47-87 29-67 (220)
305 TIGR00958 3a01208 Conjugate Tr 96.6 0.0043 9.2E-08 61.7 6.7 39 47-88 507-545 (711)
306 TIGR00455 apsK adenylylsulfate 96.6 0.005 1.1E-07 50.4 6.1 41 46-88 16-56 (184)
307 PRK05748 replicative DNA helic 96.6 0.0021 4.6E-08 60.3 4.3 57 33-90 187-244 (448)
308 TIGR02314 ABC_MetN D-methionin 96.6 0.0023 5E-08 57.8 4.3 39 49-89 32-70 (343)
309 cd00880 Era_like Era (E. coli 96.6 0.024 5.3E-07 43.8 9.8 66 160-228 45-116 (163)
310 TIGR03574 selen_PSTK L-seryl-t 96.6 0.0021 4.6E-08 55.3 3.9 36 51-88 2-37 (249)
311 TIGR02857 CydD thiol reductant 96.6 0.0059 1.3E-07 58.5 7.4 41 47-90 348-388 (529)
312 TIGR02211 LolD_lipo_ex lipopro 96.6 0.0018 4E-08 54.5 3.5 40 47-88 30-69 (221)
313 PF13401 AAA_22: AAA domain; P 96.6 0.003 6.5E-08 48.3 4.4 41 47-89 3-48 (131)
314 COG0050 TufB GTPases - transla 96.6 0.0033 7.2E-08 54.4 4.9 89 161-257 76-164 (394)
315 cd03223 ABCD_peroxisomal_ALDP 96.6 0.014 3.1E-07 46.9 8.5 35 47-83 26-60 (166)
316 KOG0066|consensus 96.6 0.011 2.5E-07 54.0 8.5 88 146-256 710-799 (807)
317 cd03217 ABC_FeS_Assembly ABC-t 96.6 0.0085 1.8E-07 49.7 7.3 40 47-88 25-66 (200)
318 cd03294 ABC_Pro_Gly_Bertaine T 96.6 0.0022 4.8E-08 55.9 3.9 39 47-87 49-87 (269)
319 PRK10762 D-ribose transporter 96.6 0.0068 1.5E-07 57.7 7.4 40 47-88 29-68 (501)
320 cd03268 ABC_BcrA_bacitracin_re 96.6 0.0012 2.6E-08 55.1 2.1 40 47-88 25-64 (208)
321 TIGR03796 NHPM_micro_ABC1 NHPM 96.6 0.0053 1.1E-07 61.0 6.9 41 47-90 505-545 (710)
322 cd03225 ABC_cobalt_CbiO_domain 96.6 0.0038 8.2E-08 52.2 5.0 40 47-88 26-65 (211)
323 TIGR03608 L_ocin_972_ABC putat 96.6 0.0018 3.8E-08 54.0 3.0 37 49-87 25-61 (206)
324 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.019 4E-07 45.1 8.6 35 47-83 25-59 (144)
325 PRK10512 selenocysteinyl-tRNA- 96.6 0.016 3.4E-07 56.4 9.8 66 160-228 51-116 (614)
326 PRK11288 araG L-arabinose tran 96.6 0.0069 1.5E-07 57.7 7.3 40 47-88 29-68 (501)
327 PRK08006 replicative DNA helic 96.5 0.003 6.5E-08 59.4 4.7 58 32-90 207-265 (471)
328 PRK11831 putative ABC transpor 96.5 0.0028 6.1E-08 55.2 4.2 39 47-87 32-70 (269)
329 PRK13657 cyclic beta-1,2-gluca 96.5 0.0037 8E-08 60.7 5.4 40 47-89 361-400 (588)
330 PRK09493 glnQ glutamine ABC tr 96.5 0.0032 6.9E-08 53.8 4.4 40 47-88 26-65 (240)
331 cd03262 ABC_HisP_GlnQ_permease 96.5 0.0032 6.9E-08 52.7 4.3 40 47-88 25-64 (213)
332 cd01129 PulE-GspE PulE/GspE Th 96.5 0.051 1.1E-06 47.3 11.9 37 47-85 79-115 (264)
333 cd00009 AAA The AAA+ (ATPases 96.5 0.0065 1.4E-07 46.6 5.8 52 36-89 7-58 (151)
334 TIGR01288 nodI ATP-binding ABC 96.5 0.0025 5.4E-08 56.6 3.8 39 48-88 30-68 (303)
335 cd03296 ABC_CysA_sulfate_impor 96.5 0.0041 8.8E-08 53.2 4.9 40 47-88 27-66 (239)
336 COG4618 ArpD ABC-type protease 96.5 0.005 1.1E-07 57.2 5.6 74 33-111 349-422 (580)
337 TIGR00436 era GTP-binding prot 96.5 0.018 3.9E-07 50.2 9.0 65 160-228 48-119 (270)
338 PRK10584 putative ABC transpor 96.5 0.0048 1E-07 52.3 5.3 40 47-88 35-74 (228)
339 PRK08506 replicative DNA helic 96.5 0.0015 3.3E-08 61.5 2.5 56 33-90 176-232 (472)
340 cd03297 ABC_ModC_molybdenum_tr 96.5 0.0044 9.4E-08 52.0 5.0 37 49-87 24-60 (214)
341 PRK10771 thiQ thiamine transpo 96.5 0.007 1.5E-07 51.4 6.3 40 47-88 24-63 (232)
342 COG3638 ABC-type phosphate/pho 96.5 0.0047 1E-07 51.9 5.0 42 47-90 29-70 (258)
343 PRK11000 maltose/maltodextrin 96.5 0.0024 5.3E-08 58.3 3.7 40 47-88 28-67 (369)
344 PRK13635 cbiO cobalt transport 96.5 0.0037 7.9E-08 54.8 4.6 40 48-89 33-72 (279)
345 PRK06321 replicative DNA helic 96.5 0.0034 7.4E-08 59.0 4.6 57 33-90 210-267 (472)
346 cd04155 Arl3 Arl3 subfamily. 96.5 0.086 1.9E-06 42.1 12.4 65 160-228 58-127 (173)
347 PRK11650 ugpC glycerol-3-phosp 96.5 0.0034 7.3E-08 57.0 4.4 39 49-89 31-69 (356)
348 cd04127 Rab27A Rab27a subfamil 96.5 0.11 2.3E-06 41.9 13.0 89 160-259 63-155 (180)
349 PF13604 AAA_30: AAA domain; P 96.5 0.0078 1.7E-07 49.9 6.3 38 47-86 17-54 (196)
350 cd03222 ABC_RNaseL_inhibitor T 96.5 0.017 3.6E-07 47.1 8.0 35 47-83 24-58 (177)
351 PF00485 PRK: Phosphoribulokin 96.5 0.0051 1.1E-07 50.8 5.2 37 50-88 1-41 (194)
352 cd01864 Rab19 Rab19 subfamily. 96.5 0.023 5E-07 45.2 8.9 66 160-228 52-120 (165)
353 cd03213 ABCG_EPDR ABCG transpo 96.5 0.0041 8.8E-08 51.4 4.5 40 47-88 34-75 (194)
354 TIGR01277 thiQ thiamine ABC tr 96.5 0.006 1.3E-07 51.1 5.6 39 47-87 23-61 (213)
355 PF13245 AAA_19: Part of AAA d 96.5 0.0055 1.2E-07 42.5 4.4 37 48-86 10-50 (76)
356 COG4987 CydC ABC-type transpor 96.5 0.0025 5.5E-08 59.4 3.5 41 47-90 364-404 (573)
357 cd04109 Rab28 Rab28 subfamily. 96.5 0.095 2.1E-06 43.9 12.9 66 160-228 50-121 (215)
358 PRK05480 uridine/cytidine kina 96.4 0.0055 1.2E-07 51.2 5.3 39 47-89 5-43 (209)
359 COG1124 DppF ABC-type dipeptid 96.4 0.01 2.3E-07 50.1 6.8 37 47-86 33-69 (252)
360 PTZ00416 elongation factor 2; 96.4 0.043 9.2E-07 55.5 12.4 66 159-228 91-156 (836)
361 cd03214 ABC_Iron-Siderophores_ 96.4 0.0078 1.7E-07 49.1 6.0 40 47-88 24-63 (180)
362 PF07755 DUF1611: Protein of u 96.4 0.0062 1.3E-07 53.5 5.7 170 46-264 111-295 (301)
363 smart00175 RAB Rab subfamily o 96.4 0.1 2.2E-06 41.0 12.5 89 160-259 49-140 (164)
364 PF13207 AAA_17: AAA domain; P 96.4 0.0033 7.2E-08 47.4 3.6 24 50-73 1-24 (121)
365 COG3367 Uncharacterized conser 96.4 0.046 9.9E-07 48.0 10.8 174 47-268 148-330 (339)
366 cd01878 HflX HflX subfamily. 96.4 0.11 2.4E-06 42.9 13.1 67 160-228 89-165 (204)
367 cd02029 PRK_like Phosphoribulo 96.4 0.0043 9.3E-08 53.5 4.5 37 52-90 3-39 (277)
368 PRK11614 livF leucine/isoleuci 96.4 0.0068 1.5E-07 51.7 5.8 40 47-88 30-69 (237)
369 PRK10619 histidine/lysine/argi 96.4 0.0041 8.9E-08 53.8 4.5 39 47-87 30-68 (257)
370 PRK15494 era GTPase Era; Provi 96.4 0.071 1.5E-06 48.1 12.6 65 160-228 100-172 (339)
371 TIGR02142 modC_ABC molybdenum 96.4 0.0054 1.2E-07 55.7 5.4 40 47-88 22-61 (354)
372 PRK10575 iron-hydroxamate tran 96.4 0.0081 1.8E-07 52.2 6.3 40 47-88 36-75 (265)
373 PRK11264 putative amino-acid A 96.4 0.0046 1E-07 53.1 4.7 39 47-87 28-66 (250)
374 PRK09554 feoB ferrous iron tra 96.4 0.085 1.9E-06 52.8 14.1 89 160-260 50-147 (772)
375 cd02025 PanK Pantothenate kina 96.4 0.0047 1E-07 52.2 4.5 37 52-90 3-41 (220)
376 PRK04328 hypothetical protein; 96.4 0.022 4.9E-07 49.0 8.8 54 34-89 7-62 (249)
377 PRK13647 cbiO cobalt transport 96.4 0.0042 9.1E-08 54.3 4.3 41 47-89 30-70 (274)
378 cd01866 Rab2 Rab2 subfamily. 96.4 0.089 1.9E-06 42.0 11.8 66 160-228 53-121 (168)
379 PRK13644 cbiO cobalt transport 96.4 0.0025 5.5E-08 55.7 2.9 40 47-88 27-66 (274)
380 cd01867 Rab8_Rab10_Rab13_like 96.4 0.11 2.5E-06 41.3 12.4 66 160-228 52-120 (167)
381 COG4555 NatA ABC-type Na+ tran 96.4 0.0087 1.9E-07 49.2 5.7 41 48-90 28-68 (245)
382 PRK09700 D-allose transporter 96.4 0.0096 2.1E-07 56.8 7.1 40 47-88 30-69 (510)
383 TIGR02868 CydC thiol reductant 96.4 0.0042 9E-08 59.5 4.5 40 47-89 361-400 (529)
384 cd04112 Rab26 Rab26 subfamily. 96.4 0.1 2.2E-06 42.8 12.2 89 160-259 50-141 (191)
385 PRK06762 hypothetical protein; 96.3 0.0049 1.1E-07 49.4 4.3 36 48-88 2-37 (166)
386 PRK05636 replicative DNA helic 96.3 0.004 8.6E-08 59.1 4.2 56 33-89 249-305 (505)
387 cd01898 Obg Obg subfamily. Th 96.3 0.055 1.2E-06 43.0 10.4 66 161-228 49-126 (170)
388 PRK05541 adenylylsulfate kinas 96.3 0.0061 1.3E-07 49.4 4.8 38 49-88 8-45 (176)
389 cd04101 RabL4 RabL4 (Rab-like4 96.3 0.1 2.2E-06 41.2 11.9 66 160-228 52-119 (164)
390 PRK13650 cbiO cobalt transport 96.3 0.0035 7.7E-08 54.9 3.6 41 47-89 32-72 (279)
391 PRK11231 fecE iron-dicitrate t 96.3 0.0089 1.9E-07 51.6 6.0 39 47-87 27-65 (255)
392 PRK09536 btuD corrinoid ABC tr 96.3 0.018 3.9E-07 53.1 8.2 41 48-90 29-69 (402)
393 PRK11124 artP arginine transpo 96.3 0.0054 1.2E-07 52.5 4.5 39 47-87 27-65 (242)
394 PF03796 DnaB_C: DnaB-like hel 96.3 0.0076 1.7E-07 52.2 5.5 54 35-90 5-60 (259)
395 TIGR01184 ntrCD nitrate transp 96.3 0.0069 1.5E-07 51.5 5.1 39 48-88 11-49 (230)
396 cd03295 ABC_OpuCA_Osmoprotecti 96.3 0.0061 1.3E-07 52.2 4.8 39 47-87 26-64 (242)
397 PRK10851 sulfate/thiosulfate t 96.3 0.0089 1.9E-07 54.3 6.0 38 49-88 29-66 (353)
398 TIGR03375 type_I_sec_LssB type 96.3 0.007 1.5E-07 60.0 5.8 41 47-90 491-531 (694)
399 PLN03232 ABC transporter C fam 96.3 0.0094 2E-07 64.0 7.1 44 47-93 1262-1305(1495)
400 TIGR03873 F420-0_ABC_ATP propo 96.3 0.012 2.5E-07 50.9 6.5 40 47-88 26-65 (256)
401 COG3854 SpoIIIAA ncharacterize 96.3 0.075 1.6E-06 44.8 10.8 48 39-87 128-179 (308)
402 cd01122 GP4d_helicase GP4d_hel 96.3 0.0062 1.4E-07 53.0 4.8 54 34-89 15-70 (271)
403 cd03260 ABC_PstB_phosphate_tra 96.3 0.0079 1.7E-07 50.9 5.3 39 47-87 25-68 (227)
404 PRK11432 fbpC ferric transport 96.3 0.0053 1.2E-07 55.6 4.5 39 48-88 32-70 (351)
405 TIGR03420 DnaA_homol_Hda DnaA 96.3 0.0062 1.3E-07 51.3 4.7 54 33-88 23-76 (226)
406 cd01868 Rab11_like Rab11-like. 96.3 0.1 2.3E-06 41.2 11.7 66 160-228 52-120 (165)
407 COG3845 ABC-type uncharacteriz 96.3 0.015 3.2E-07 53.8 7.3 38 47-86 29-66 (501)
408 PRK09452 potA putrescine/sperm 96.3 0.0057 1.2E-07 55.9 4.6 39 48-88 40-78 (375)
409 PRK13538 cytochrome c biogenes 96.3 0.0066 1.4E-07 50.5 4.7 39 48-88 27-65 (204)
410 PRK13541 cytochrome c biogenes 96.3 0.0078 1.7E-07 49.7 5.1 40 47-88 25-64 (195)
411 TIGR03265 PhnT2 putative 2-ami 96.2 0.0048 1E-07 56.0 4.1 39 48-88 30-68 (353)
412 TIGR02858 spore_III_AA stage I 96.2 0.073 1.6E-06 46.4 11.1 37 50-88 113-149 (270)
413 TIGR01420 pilT_fam pilus retra 96.2 0.096 2.1E-06 47.4 12.3 37 47-85 121-158 (343)
414 TIGR00972 3a0107s01c2 phosphat 96.2 0.007 1.5E-07 52.0 4.8 40 47-88 26-70 (247)
415 cd04125 RabA_like RabA-like su 96.2 0.24 5.2E-06 40.3 13.7 66 160-228 49-117 (188)
416 cd03233 ABC_PDR_domain1 The pl 96.2 0.018 3.9E-07 47.9 7.1 42 47-88 32-74 (202)
417 TIGR03575 selen_PSTK_euk L-ser 96.2 0.0059 1.3E-07 54.8 4.3 40 50-90 1-40 (340)
418 cd03231 ABC_CcmA_heme_exporter 96.2 0.01 2.2E-07 49.2 5.6 40 47-88 25-64 (201)
419 PRK11174 cysteine/glutathione 96.2 0.0087 1.9E-07 58.1 5.8 40 47-90 376-415 (588)
420 TIGR00475 selB selenocysteine- 96.2 0.025 5.4E-07 54.8 8.9 66 160-228 50-115 (581)
421 TIGR02788 VirB11 P-type DNA tr 96.2 0.094 2E-06 46.7 11.9 36 47-85 143-178 (308)
422 COG1135 AbcC ABC-type metal io 96.2 0.024 5.2E-07 49.7 7.7 72 47-121 32-105 (339)
423 PRK09270 nucleoside triphospha 96.2 0.0097 2.1E-07 50.6 5.4 40 47-88 32-72 (229)
424 cd04122 Rab14 Rab14 subfamily. 96.2 0.2 4.3E-06 39.8 12.9 66 160-228 51-119 (166)
425 TIGR03522 GldA_ABC_ATP gliding 96.2 0.0081 1.8E-07 53.3 5.1 41 47-89 27-67 (301)
426 PRK13540 cytochrome c biogenes 96.2 0.008 1.7E-07 49.8 4.8 38 48-87 27-64 (200)
427 COG0467 RAD55 RecA-superfamily 96.2 0.027 5.8E-07 48.8 8.2 57 34-92 7-65 (260)
428 cd04121 Rab40 Rab40 subfamily. 96.2 0.13 2.8E-06 42.3 11.9 89 160-259 55-145 (189)
429 COG4088 Predicted nucleotide k 96.2 0.0044 9.5E-08 51.1 3.0 38 50-89 3-40 (261)
430 PRK13632 cbiO cobalt transport 96.2 0.0049 1.1E-07 53.8 3.6 40 47-88 34-73 (271)
431 cd01860 Rab5_related Rab5-rela 96.2 0.12 2.5E-06 40.8 11.4 66 160-228 50-118 (163)
432 TIGR02238 recomb_DMC1 meiotic 96.2 0.024 5.1E-07 50.5 8.0 56 34-89 80-141 (313)
433 cd04113 Rab4 Rab4 subfamily. 96.2 0.2 4.3E-06 39.4 12.7 65 160-228 49-117 (161)
434 COG4175 ProV ABC-type proline/ 96.2 0.023 5E-07 50.0 7.5 69 46-116 52-123 (386)
435 TIGR01978 sufC FeS assembly AT 96.2 0.011 2.5E-07 50.4 5.8 40 47-88 25-66 (243)
436 COG0572 Udk Uridine kinase [Nu 96.1 0.026 5.6E-07 47.2 7.5 38 49-90 9-46 (218)
437 PRK09302 circadian clock prote 96.1 0.013 2.9E-07 55.8 6.7 55 33-89 256-312 (509)
438 PRK08840 replicative DNA helic 96.1 0.0067 1.4E-07 57.0 4.5 57 33-90 201-258 (464)
439 TIGR00483 EF-1_alpha translati 96.1 0.021 4.7E-07 53.2 7.9 66 160-228 85-153 (426)
440 PTZ00243 ABC transporter; Prov 96.1 0.014 3E-07 62.8 7.4 44 47-93 1336-1379(1560)
441 COG1160 Predicted GTPases [Gen 96.1 0.046 1E-06 50.3 9.7 66 160-228 51-124 (444)
442 cd04115 Rab33B_Rab33A Rab33B/R 96.1 0.13 2.8E-06 41.1 11.6 67 160-228 51-121 (170)
443 PF13479 AAA_24: AAA domain 96.1 0.023 4.9E-07 47.8 7.3 32 48-89 3-34 (213)
444 COG4615 PvdE ABC-type sideroph 96.1 0.014 3.1E-07 52.7 6.3 53 45-99 346-398 (546)
445 PRK11607 potG putrescine trans 96.1 0.012 2.5E-07 54.0 6.0 40 47-88 44-83 (377)
446 TIGR00957 MRP_assoc_pro multi 96.1 0.016 3.5E-07 62.3 7.9 44 47-93 1312-1355(1522)
447 PRK11144 modC molybdate transp 96.1 0.015 3.2E-07 52.8 6.7 38 48-87 24-61 (352)
448 PRK09984 phosphonate/organopho 96.1 0.016 3.5E-07 50.2 6.6 40 47-88 29-71 (262)
449 cd00154 Rab Rab family. Rab G 96.1 0.086 1.9E-06 40.9 10.3 66 160-228 49-117 (159)
450 COG2805 PilT Tfp pilus assembl 96.1 0.051 1.1E-06 47.5 9.4 147 24-212 101-247 (353)
451 cd04154 Arl2 Arl2 subfamily. 96.1 0.17 3.7E-06 40.5 12.2 65 160-228 58-127 (173)
452 cd03300 ABC_PotA_N PotA is an 96.1 0.0068 1.5E-07 51.5 4.1 39 47-87 25-63 (232)
453 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.1 0.15 3.3E-06 40.4 11.8 66 160-228 51-119 (166)
454 cd04120 Rab12 Rab12 subfamily. 96.1 0.21 4.5E-06 41.6 12.8 66 160-228 49-117 (202)
455 cd00267 ABC_ATPase ABC (ATP-bi 96.1 0.039 8.5E-07 43.7 8.2 36 49-86 26-61 (157)
456 PHA00729 NTP-binding motif con 96.1 0.013 2.9E-07 49.4 5.6 34 40-73 9-42 (226)
457 TIGR00554 panK_bact pantothena 96.1 0.016 3.5E-07 50.9 6.4 44 47-90 61-104 (290)
458 PRK13652 cbiO cobalt transport 96.1 0.0074 1.6E-07 52.8 4.3 40 47-88 29-68 (277)
459 cd03267 ABC_NatA_like Similar 96.1 0.0061 1.3E-07 52.0 3.7 38 47-86 46-83 (236)
460 PRK13648 cbiO cobalt transport 96.1 0.0071 1.5E-07 52.7 4.1 40 47-88 34-73 (269)
461 PRK13633 cobalt transporter AT 96.1 0.0071 1.5E-07 53.0 4.2 40 47-88 35-74 (280)
462 PRK10247 putative ABC transpor 96.0 0.013 2.9E-07 49.5 5.6 39 47-87 32-70 (225)
463 PRK09519 recA DNA recombinatio 96.0 0.044 9.5E-07 54.4 9.7 55 33-89 42-99 (790)
464 COG2274 SunT ABC-type bacterio 96.0 0.0095 2.1E-07 58.7 5.1 43 47-92 499-541 (709)
465 PRK09700 D-allose transporter 96.0 0.027 5.9E-07 53.7 8.1 40 47-88 288-327 (510)
466 PRK14250 phosphate ABC transpo 96.0 0.026 5.7E-07 48.2 7.3 39 48-88 29-67 (241)
467 PRK05433 GTP-binding protein L 96.0 0.047 1E-06 53.1 9.7 65 160-228 74-138 (600)
468 PLN03130 ABC transporter C fam 96.0 0.021 4.5E-07 61.7 7.9 44 47-93 1265-1308(1622)
469 cd01893 Miro1 Miro1 subfamily. 96.0 0.13 2.9E-06 40.9 11.0 66 160-228 47-115 (166)
470 COG4988 CydD ABC-type transpor 96.0 0.0035 7.5E-08 59.1 1.8 41 47-90 347-387 (559)
471 TIGR02982 heterocyst_DevA ABC 96.0 0.0079 1.7E-07 50.7 3.9 36 49-86 32-67 (220)
472 COG0444 DppD ABC-type dipeptid 96.0 0.019 4.1E-07 50.5 6.2 58 47-107 31-96 (316)
473 PRK13543 cytochrome c biogenes 95.9 0.022 4.7E-07 47.8 6.4 38 48-87 37-74 (214)
474 cd04108 Rab36_Rab34 Rab34/Rab3 95.9 0.25 5.3E-06 39.7 12.4 66 160-228 49-118 (170)
475 TIGR03005 ectoine_ehuA ectoine 95.9 0.0094 2E-07 51.3 4.3 38 47-86 25-62 (252)
476 PRK11247 ssuB aliphatic sulfon 95.9 0.025 5.4E-07 48.9 6.9 35 47-83 37-71 (257)
477 COG4604 CeuD ABC-type enteroch 95.9 0.039 8.4E-07 45.4 7.4 41 47-90 27-67 (252)
478 COG0480 FusA Translation elong 95.9 0.051 1.1E-06 53.4 9.7 85 160-258 76-160 (697)
479 PF01695 IstB_IS21: IstB-like 95.9 0.0098 2.1E-07 48.5 4.1 34 51-86 50-83 (178)
480 PRK05439 pantothenate kinase; 95.9 0.015 3.2E-07 51.6 5.5 43 47-89 85-127 (311)
481 COG4108 PrfC Peptide chain rel 95.9 0.056 1.2E-06 49.5 9.1 150 47-259 12-166 (528)
482 PRK13643 cbiO cobalt transport 95.9 0.0075 1.6E-07 53.1 3.6 40 47-88 31-70 (288)
483 PTZ00035 Rad51 protein; Provis 95.9 0.029 6.4E-07 50.5 7.4 55 33-89 101-163 (337)
484 cd02023 UMPK Uridine monophosp 95.9 0.01 2.3E-07 49.0 4.2 35 51-89 2-36 (198)
485 PRK07004 replicative DNA helic 95.9 0.004 8.8E-08 58.5 1.9 57 33-90 197-254 (460)
486 PRK13636 cbiO cobalt transport 95.9 0.0098 2.1E-07 52.3 4.2 40 47-88 31-70 (283)
487 COG0396 sufC Cysteine desulfur 95.9 0.054 1.2E-06 45.5 8.2 43 46-88 28-70 (251)
488 TIGR00968 3a0106s01 sulfate AB 95.9 0.011 2.4E-07 50.5 4.4 38 48-87 26-63 (237)
489 cd04160 Arfrp1 Arfrp1 subfamil 95.9 0.31 6.8E-06 38.5 12.7 65 160-228 50-119 (167)
490 TIGR01187 potA spermidine/putr 95.9 0.0076 1.7E-07 54.1 3.6 33 54-88 2-34 (325)
491 PRK13631 cbiO cobalt transport 95.9 0.012 2.6E-07 52.7 4.7 39 48-88 52-90 (320)
492 cd01895 EngA2 EngA2 subfamily. 95.9 0.15 3.1E-06 40.4 10.7 66 160-228 50-125 (174)
493 TIGR01846 type_I_sec_HlyB type 95.9 0.0072 1.6E-07 59.9 3.6 41 47-90 483-523 (694)
494 cd03299 ABC_ModC_like Archeal 95.9 0.0098 2.1E-07 50.7 4.0 39 48-88 25-63 (235)
495 TIGR01618 phage_P_loop phage n 95.9 0.036 7.7E-07 46.7 7.2 32 49-89 13-44 (220)
496 cd04119 RJL RJL (RabJ-Like) su 95.8 0.28 6E-06 38.6 12.2 66 160-228 49-122 (168)
497 COG2109 BtuR ATP:corrinoid ade 95.8 0.14 3.1E-06 41.6 10.2 150 47-214 27-182 (198)
498 TIGR03740 galliderm_ABC gallid 95.8 0.013 2.9E-07 49.4 4.7 38 47-86 25-62 (223)
499 TIGR03258 PhnT 2-aminoethylpho 95.8 0.0097 2.1E-07 54.2 4.0 38 49-88 32-71 (362)
500 TIGR02633 xylG D-xylose ABC tr 95.8 0.024 5.3E-07 53.9 6.9 40 47-88 26-67 (500)
No 1
>KOG3022|consensus
Probab=100.00 E-value=7.5e-48 Score=320.69 Aligned_cols=286 Identities=59% Similarity=1.050 Sum_probs=272.3
Q ss_pred CCCCCccccCccccccCCCCCcccccCCCCCCCcChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCc
Q psy11347 1 CPGTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVD 80 (294)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~ 80 (294)
|||..++.+||.+.|.+|+++-.|.+ +|..+++-++.+.++++....+|+|.||||||||||+|.|||.+|+ ..|++
T Consensus 2 cpg~~s~~ag~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La--~~g~~ 78 (300)
T KOG3022|consen 2 CPGVLSSEAGKAEECAGCPNVGYCSS-SPVQPDPDIPAKQENLSGVKHIILVLSGKGGVGKSTVTVNLALALA--SEGKK 78 (300)
T ss_pred CCCcchhhhcchhhccCCcccccccc-CCcCcCCCcccccccccccceEEEEEeCCCCCchhHHHHHHHHHHh--cCCCc
Confidence 99999999999999999999999999 8888899999999999999999999999999999999999999999 89999
Q ss_pred EEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCc
Q psy11347 81 VGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGL 160 (294)
Q Consensus 81 VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~y 160 (294)
|.++|.|..++++..++|.+.+...+....|.++....++.++..++.+...++.+.+.++.....++.++....|++ .
T Consensus 79 vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~-l 157 (300)
T KOG3022|consen 79 VGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVVNKNLKLMSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGE-L 157 (300)
T ss_pred EEEEeecccCCCchhhcCCCCceeeecCCCceeeeecCCeEEEEeeeecCCCCccceeechHHHHHHHHHHhcCCCCC-c
Confidence 999999999999999999999999999999999989999999999999888788889999999999999999999988 9
Q ss_pred cEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccC
Q psy11347 161 EYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240 (294)
Q Consensus 161 d~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~ 240 (294)
||+|||+||+.+++++.+.+.+ ..+|..|+||+|...++.++.+-+.++++.+++.+|+|-||+.+.|+.|.+...++
T Consensus 158 DyLviDtPPGtsDehls~~~~~--~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF 235 (300)
T KOG3022|consen 158 DYLVIDTPPGTSDEHLSLVQFL--RESDGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIF 235 (300)
T ss_pred CEEEEeCCCCCChhhhheeecc--cccCceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEeccccccCCCCCCcceec
Confidence 9999999999999999998877 44588999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHhhcCCceeeccCCCchhhhhccCCccccc--CCCHHHHHHHHhhC
Q psy11347 241 PKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 241 ~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~~v~~--~~s~~~~~~~~la~ 294 (294)
.. ...+++.+.+|+++|+.||-|+.+.++.++|.|+++ |.+.+++.|+++++
T Consensus 236 ~~--gGg~~l~~~~glp~Lg~iPld~~i~~~~d~G~~~v~~~p~s~~~~af~~i~~ 289 (300)
T KOG3022|consen 236 GS--GGGERLAEELGLPLLGSLPLDPLIAESSDSGVPFVEEYPDSPASEAFEDIAE 289 (300)
T ss_pred cC--ccHHHHHHHcCCCeEeecCCCHHHHHhccCCCeeEecCCCchHHHHHHHHHH
Confidence 65 667899999999999999999999999999999888 99999999999873
No 2
>PRK11670 antiporter inner membrane protein; Provisional
Probab=100.00 E-value=2.8e-33 Score=252.57 Aligned_cols=243 Identities=39% Similarity=0.712 Sum_probs=180.1
Q ss_pred hhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccccc-ccCCCCcceeccCe
Q psy11347 42 HLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQ-SASGWSPVFLEENL 120 (294)
Q Consensus 42 ~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~-~~~~~~~~~~~~~l 120 (294)
.+..+.++|+|.|+||||||||+|.|||..|+ ..|+||+++|+|+++++++.+||........ ....+.+.. ..++
T Consensus 102 ~~~~~~~vIaV~S~KGGVGKTT~avNLA~aLA--~~G~rVlLID~D~qgps~~~~lg~~~~~~~~~~~~~i~p~~-~~g~ 178 (369)
T PRK11670 102 GVNGVKNIIAVSSGKGGVGKSSTAVNLALALA--AEGAKVGILDADIYGPSIPTMLGAEDQRPTSPDGTHMAPIM-AHGL 178 (369)
T ss_pred cCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHH--HCCCcEEEEeCCCCCCCcchhcCCcccCCcccCCceeeeee-ccCc
Confidence 46667899999999999999999999999999 8999999999999999998889875421110 000011100 0111
Q ss_pred EEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhh
Q psy11347 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVS 200 (294)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s 200 (294)
.....+. +........+.++.....+.+++....+++ |||||||+||++++..+.. ..+ ..+|.+|+|++++..+
T Consensus 179 ~~~~~~~-l~~~~~~~i~~g~~~~~~l~~~l~~~~~~~-yDyvIID~PPg~gd~~l~~-~~l--~aad~viiV~tp~~~s 253 (369)
T PRK11670 179 ATNSIGY-LVTDDNAMVWRGPMASKALMQMLQETLWPD-LDYLVLDMPPGTGDIQLTL-AQN--IPVTGAVVVTTPQDIA 253 (369)
T ss_pred ccccHHH-hcCcCcceeecCcchHHHHHHHHHHHhhcc-CCEEEEeCCCCCchHHHHH-hhh--ccCCeEEEEecCchhH
Confidence 1111111 111111222333344456677775333345 9999999999998644322 222 3689999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccCCccccc
Q psy11347 201 LLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAID 280 (294)
Q Consensus 201 ~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~~v~~ 280 (294)
+.++.+.++.+.+.+++.+|+|.||+..+++.|.....++. ....+++.+.++.++++.||.+..+.++...|+|+..
T Consensus 254 ~~da~~~i~~~~~~~~~ilGiV~Nm~~~~~~~~~~~~~if~--~~~~~~lae~~~~~ll~~IP~~~~I~ea~~~G~Pv~~ 331 (369)
T PRK11670 254 LIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFG--TGGAEKLAEKYHTQLLGQMPLHISLREDLDRGTPTVV 331 (369)
T ss_pred HHHHHHHHHHHhccCCCeEEEEEcCCccccCCccchhhhcc--cchHHHHHHHcCCcEEEEeCCChHHHHHHHCCCcEEE
Confidence 99999999999999999999999999988777766666553 2346788888999999999999999999999999997
Q ss_pred --CCCHHHHHHHHhhC
Q psy11347 281 --TPSACVDAIQQIVQ 294 (294)
Q Consensus 281 --~~s~~~~~~~~la~ 294 (294)
|+++++++|++|++
T Consensus 332 ~~p~s~~a~~y~~LA~ 347 (369)
T PRK11670 332 SRPESEFTAIYRQLAD 347 (369)
T ss_pred eCCCCHHHHHHHHHHH
Confidence 99999999999874
No 3
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=100.00 E-value=2e-33 Score=226.82 Aligned_cols=225 Identities=26% Similarity=0.343 Sum_probs=180.9
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccc------ccccCCCCccee---
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQV------HQSASGWSPVFL--- 116 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~------~~~~~~~~~~~~--- 116 (294)
|.++|+++||||||||||.++||+..|+ ..|++|++||+|..-.+++..+|.+...+ .++...+.+...
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA--~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDK 78 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALA--QLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDK 78 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHH--HcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccc
Confidence 6789999999999999999999999999 99999999999998889999999998743 333444444332
Q ss_pred -ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecC
Q psy11347 117 -EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTT 195 (294)
Q Consensus 117 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~ 195 (294)
.+|+.++|+...-. . .....+.+..++++|+. .+|||||+|+|++....+. +++ ..||..++|++
T Consensus 79 r~~nL~lLPAsQtrd--K------dalt~E~v~~vv~eL~~-~~fDyIi~DsPAGIE~G~~---~A~--~~Ad~AiVVtn 144 (272)
T COG2894 79 RLENLFLLPASQTRD--K------DALTPEGVKKVVNELKA-MDFDYIIIDSPAGIEQGFK---NAV--YFADEAIVVTN 144 (272)
T ss_pred cCCceEecccccccC--c------ccCCHHHHHHHHHHHHh-cCCCEEEecCcchHHHHHH---hhh--hccceEEEEcC
Confidence 38899999874321 1 12234477888888875 3499999999999875443 333 68999999999
Q ss_pred CchhhHHHHHHHHHHHHhcC----CC---eeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchh
Q psy11347 196 PQEVSLLDVRKEIDFCRKVN----IP---IIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLV 268 (294)
Q Consensus 196 ~~~~s~~~~~~~l~~l~~~~----~~---~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~ 268 (294)
|+..|++++.|++-.++..+ .. ..++++||+++.- -.+.++. .++++.+-+.++++|+||.++.+
T Consensus 145 PEvSsVRDsDRiiGlLesk~~rae~~~~~~~~llvnR~~p~~---v~~GeMl-----sv~Dv~~iL~i~liGiiPed~~V 216 (272)
T COG2894 145 PEVSSVRDSDRIIGLLESKSRRAEIGEEPKEHLLLNRYRPEM---VKRGEML-----SVEDVLEILSIPLIGVIPEDQDV 216 (272)
T ss_pred CCccccccchhheeehhcccchhhcCCcccceEEEEccCHHH---hccCCcc-----cHHHHHHHhCCceEEeecCchhh
Confidence 99999999999999997554 22 3799999998520 0122333 58899999999999999999999
Q ss_pred hhhccCCccccc-CCCHHHHHHHHhhC
Q psy11347 269 TRHCDEGTSAID-TPSACVDAIQQIVQ 294 (294)
Q Consensus 269 ~~a~~~g~~v~~-~~s~~~~~~~~la~ 294 (294)
..+.+.|.|+.- +.+.+.++|+.+++
T Consensus 217 i~asN~GePv~l~~~~~a~~Ay~d~ar 243 (272)
T COG2894 217 LRASNKGEPVILDDNSDAGKAYRDIAR 243 (272)
T ss_pred heecCCCCCeEeCCCchHHHHHHHHHH
Confidence 999999999998 88899999998874
No 4
>CHL00175 minD septum-site determining protein; Validated
Probab=100.00 E-value=3.1e-32 Score=239.09 Aligned_cols=231 Identities=23% Similarity=0.286 Sum_probs=178.5
Q ss_pred HhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc------cccccCCCCc
Q psy11347 40 KSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ------VHQSASGWSP 113 (294)
Q Consensus 40 ~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~------~~~~~~~~~~ 113 (294)
+.+...|+++|+|+|+||||||||+|.|||.+|+ +.|++|++||+|++.++++.+||.+... +......+++
T Consensus 8 ~~~~~~~~~vi~v~s~KGGvGKTt~a~nLA~~La--~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~ 85 (281)
T CHL00175 8 KEKSATMSRIIVITSGKGGVGKTTTTANLGMSIA--RLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQ 85 (281)
T ss_pred hhhcCCCceEEEEEcCCCCCcHHHHHHHHHHHHH--hCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhh
Confidence 3455667899999999999999999999999999 8999999999999988999999876431 1222223333
Q ss_pred ce----eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcE
Q psy11347 114 VF----LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIG 189 (294)
Q Consensus 114 ~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~ 189 (294)
.. ..++++++|.+..... .......+.++++.+... .|||||||+||++.......+ ..+|.
T Consensus 86 ~~~~~~~~~~l~~l~~~~~~~~--------~~~~~~~l~~~l~~l~~~-~yD~VIiDtpp~~~~~~~~~l-----~~aD~ 151 (281)
T CHL00175 86 ALIRDKRWKNLSLLAISKNRQR--------YNVTRKNMNMLVDSLKNR-GYDYILIDCPAGIDVGFINAI-----APAQE 151 (281)
T ss_pred heeecCCCCCeEEEeCCCchhh--------ccCCHHHHHHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHH-----HhcCe
Confidence 22 2378999988643211 011233578888888632 499999999999875444433 46899
Q ss_pred EEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhh
Q psy11347 190 AIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVT 269 (294)
Q Consensus 190 vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~ 269 (294)
+++|++++..++..+.++++.+++.+....++|+|++++. ....+. ....+++.+.++.++++.||+++.+.
T Consensus 152 viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~-------~~~~~~-~~~~~~l~~~~~~~~~~~Ip~d~~v~ 223 (281)
T CHL00175 152 AIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPD-------MIQAND-MMSVRDVQEMLGIPLLGAIPEDENVI 223 (281)
T ss_pred eEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChh-------hhhhhc-cccHHHHHHHhCCCeEEEccCCHhHH
Confidence 9999999999999999999999988877789999998631 110110 11245677778999999999999999
Q ss_pred hhccCCccccc--CCCHHHHHHHHhhC
Q psy11347 270 RHCDEGTSAID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 270 ~a~~~g~~v~~--~~s~~~~~~~~la~ 294 (294)
++...|+|+.+ |.++++++|++||+
T Consensus 224 ~a~~~g~~~~~~~~~~~~~~~~~~la~ 250 (281)
T CHL00175 224 ISTNRGEPLVLNKKLTLSGIAFENAAR 250 (281)
T ss_pred HHHHcCCceEeCCCCCHHHHHHHHHHH
Confidence 99999999998 99999999999974
No 5
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.98 E-value=1.6e-31 Score=230.71 Aligned_cols=219 Identities=27% Similarity=0.387 Sum_probs=169.2
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc--cc---cccCCCCcce--eccCe
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ--VH---QSASGWSPVF--LEENL 120 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~--~~---~~~~~~~~~~--~~~~l 120 (294)
++|+|+|+||||||||+|.|||.+|+ ..|++|++||+|++++++..++|.+... +. .....+.+.. ...++
T Consensus 1 ~ii~v~~~KGGvGKTt~a~~LA~~la--~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 78 (251)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALA--KLGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPFGV 78 (251)
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHH--HCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEeCCCCE
Confidence 47999999999999999999999999 8999999999999888889989876531 11 1112222221 23689
Q ss_pred EEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhh
Q psy11347 121 SVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVS 200 (294)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s 200 (294)
+++|.+....... ......+.+.+..+. ++||+||||+||+++......+ ..+|.+|+|++++..+
T Consensus 79 ~~lp~~~~~~~~~-------~~~~~~l~~~l~~l~--~~yD~VIiD~p~~~~~~~~~~l-----~~ad~vliv~~~~~~s 144 (251)
T TIGR01969 79 KVIPAGVSLEGLR-------KADPDKLEDVLKEII--DDTDFLLIDAPAGLERDAVTAL-----AAADELLLVVNPEISS 144 (251)
T ss_pred EEEeCCCCHHHHh-------hcCHHHHHHHHHHHH--hhCCEEEEeCCCccCHHHHHHH-----HhCCeEEEEECCCCch
Confidence 9998774332211 112346777888775 3499999999999986555444 4789999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccCCccccc
Q psy11347 201 LLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAID 280 (294)
Q Consensus 201 ~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~~v~~ 280 (294)
+..+.++++.....+.+..++|+|+++.. ...+ ..+.+.+.++.++++.||+++.+.++...|+|+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~vv~N~~~~~------~~~~------~~~~l~~~~~~~~l~~Ip~~~~~~~a~~~g~~v~~ 212 (251)
T TIGR01969 145 ITDALKTKIVAEKLGTAILGVVLNRVTRD------KTEL------GREEIETILEVPVLGVVPEDPEVRRAAAFGEPVVI 212 (251)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEECCCch------hhhh------HHHHHHHhhCCcEEEEecCCHhHHHHHHcCCceEE
Confidence 99998888888887888899999998631 1111 13445555788999999999999999999999998
Q ss_pred --CCCHHHHHHHHhhC
Q psy11347 281 --TPSACVDAIQQIVQ 294 (294)
Q Consensus 281 --~~s~~~~~~~~la~ 294 (294)
|.++++++|++|++
T Consensus 213 ~~~~~~~~~~~~~la~ 228 (251)
T TIGR01969 213 YNPNSPAAQAFMELAA 228 (251)
T ss_pred eCCCCHHHHHHHHHHH
Confidence 99999999999873
No 6
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.97 E-value=1.7e-30 Score=225.50 Aligned_cols=223 Identities=24% Similarity=0.326 Sum_probs=170.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc---cc---cccCCCCcc----ee
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ---VH---QSASGWSPV----FL 116 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~---~~---~~~~~~~~~----~~ 116 (294)
+++|+|+|+|||+||||+|.|||.+|+ ..|+||+++|+|++.++++.+||.+... +. .....+.+. ..
T Consensus 1 ~~ii~v~s~kGGvGKTt~a~~lA~~la--~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 78 (261)
T TIGR01968 1 ARVIVITSGKGGVGKTTTTANLGTALA--RLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKR 78 (261)
T ss_pred CeEEEEecCCCCccHHHHHHHHHHHHH--HcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCC
Confidence 478999999999999999999999999 8999999999999988888888876431 11 111111111 12
Q ss_pred ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC
Q psy11347 117 EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP 196 (294)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~ 196 (294)
.++++++|.+..... .......+.++++.+. +.||+||||+||++.......+ ..+|.+|+|+++
T Consensus 79 ~~~l~~l~~~~~~~~--------~~~~~~~l~~~l~~l~--~~~D~viiD~p~~~~~~~~~~l-----~~aD~viiv~~~ 143 (261)
T TIGR01968 79 LKNLYLLPASQTRDK--------DAVTPEQMKKLVNELK--EEFDYVIIDCPAGIESGFRNAV-----APADEAIVVTTP 143 (261)
T ss_pred CCCeEEEeCCCchhh--------hhCCHHHHHHHHHHHH--HhCCEEEEeCCCCcCHHHHHHH-----HhCCeEEEEcCC
Confidence 368999987643211 1112335777888876 3499999999999976544433 478999999999
Q ss_pred chhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccCCc
Q psy11347 197 QEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGT 276 (294)
Q Consensus 197 ~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~ 276 (294)
+..++..+.++++.++..+....++|+|++++. ....+ ....++++.+.++.++++.||++..+.++...|+
T Consensus 144 ~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~ 215 (261)
T TIGR01968 144 EVSAVRDADRVIGLLEAKGIEKIHLIVNRLRPE-------MVKKG-DMLSVDDVLEILSIPLIGVIPEDEAIIVSTNKGE 215 (261)
T ss_pred CcHHHHHHHHHHHHHHHcCCCceEEEEeCcCch-------hcccc-cccCHHHHHHHhCCceeEEccCCHHHHHHHhcCC
Confidence 999999999999999988776789999998732 11011 1112567777789999999999999999999999
Q ss_pred cccc-CCCHHHHHHHHhhC
Q psy11347 277 SAID-TPSACVDAIQQIVQ 294 (294)
Q Consensus 277 ~v~~-~~s~~~~~~~~la~ 294 (294)
|+++ +.++++++|++|++
T Consensus 216 ~v~~~~~s~~~~~~~~La~ 234 (261)
T TIGR01968 216 PVVLNDKSRAGKAFENIAR 234 (261)
T ss_pred CeecCCCChHHHHHHHHHH
Confidence 9998 66999999999874
No 7
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.97 E-value=4e-30 Score=224.47 Aligned_cols=225 Identities=23% Similarity=0.277 Sum_probs=168.5
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccc---c---cccCCCCcce----
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQV---H---QSASGWSPVF---- 115 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~---~---~~~~~~~~~~---- 115 (294)
|+++|+|.|+||||||||+|.|||..|+ ..|++|+++|+|++.++++.+||.+.... . .....+.+..
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la--~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLA--QKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDK 78 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHH--HCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccC
Confidence 6799999999999999999999999999 89999999999999888999998764321 1 1111222211
Q ss_pred eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecC
Q psy11347 116 LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTT 195 (294)
Q Consensus 116 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~ 195 (294)
..++++++|.+.... ... .....+.++++.++... |||||||+||+++......+ ..+|.+|+|++
T Consensus 79 ~~~~~~~lp~~~~~~--~~~------~~~~~~~~~l~~l~~~~-yd~viiD~p~~~~~~~~~~l-----~~ad~vivv~~ 144 (270)
T PRK10818 79 RTENLYILPASQTRD--KDA------LTREGVAKVLDDLKAMD-FEFIVCDSPAGIETGALMAL-----YFADEAIITTN 144 (270)
T ss_pred CcCCEEEecCCCCcc--hhh------hCHHHHHHHHHHHhhcC-CCEEEEeCCCCccHHHHHHH-----HhCCeEEEEcC
Confidence 247899999874321 110 11224567777775323 99999999999986654444 57999999999
Q ss_pred CchhhHHHHHHHHHHHHhc-----C--CC-eeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCch
Q psy11347 196 PQEVSLLDVRKEIDFCRKV-----N--IP-IIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPL 267 (294)
Q Consensus 196 ~~~~s~~~~~~~l~~l~~~-----~--~~-~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~ 267 (294)
++..++..+.++++.+... + .+ ..++|+|+++.+ .... ......+++.+.+|.++++.||++..
T Consensus 145 p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~-------~~~~-~~~~~~~~~~~~~g~~~~~~Ip~~~~ 216 (270)
T PRK10818 145 PEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG-------RVSR-GDMLSMEDVLEILRIKLVGVIPEDQS 216 (270)
T ss_pred CCchHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHh-------hhhh-cccccHHHHHHHhCCcEEEEecCCHH
Confidence 9999999999999998632 1 12 258899998632 1111 11113567777889999999999999
Q ss_pred hhhhccCCccccc-CCCHHHHHHHHhhC
Q psy11347 268 VTRHCDEGTSAID-TPSACVDAIQQIVQ 294 (294)
Q Consensus 268 ~~~a~~~g~~v~~-~~s~~~~~~~~la~ 294 (294)
+.++...|+|+.. ++++++++|++|++
T Consensus 217 v~~a~~~G~~v~~~~~~~~~~~~~~la~ 244 (270)
T PRK10818 217 VLRASNQGEPVILDIEADAGKAYADTVD 244 (270)
T ss_pred HHHHHHcCCeeEeCCCCHHHHHHHHHHH
Confidence 9999999999977 88999999999874
No 8
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.97 E-value=3.8e-30 Score=224.87 Aligned_cols=227 Identities=17% Similarity=0.158 Sum_probs=161.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc-cccccc-------CCCCcc--ee
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE-QVHQSA-------SGWSPV--FL 116 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~-~~~~~~-------~~~~~~--~~ 116 (294)
|++|+|. +||||||||++.|||..|+ +.|+||+++|+|+++++...++|.... .+.... ..+.++ ..
T Consensus 1 ~~~iav~-gKGGVGKTT~a~nLA~~La--~~G~rVllvD~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~~ 77 (273)
T PRK13232 1 MRQIAIY-GKGGIGKSTTTQNLTAALS--TMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPG 77 (273)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHH--hhCCCeEEEecccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEeC
Confidence 4789999 9999999999999999999 899999999999999887777764322 111111 111112 12
Q ss_pred ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC
Q psy11347 117 EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP 196 (294)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~ 196 (294)
.++++++|++....... ...........+.+.++.+. ++|||||||++++.....+....++ ..+|.+++|+++
T Consensus 78 ~~~i~~i~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~--~~yD~vlID~~~~~~~~~~~~~~al--~aad~vlip~~p 151 (273)
T PRK13232 78 FGDIKCVESGGPEPGVG--CAGRGIITSIGLLENLGAYT--DDLDYVFYDVLGDVVCGGFAMPIRE--GKAKEIYIVASG 151 (273)
T ss_pred CCCeEEEeCCCCCCCCC--CCCCchhHHHHHHHHccccc--ccCCEEEEecCCCeeECCEeccccc--cccceEEEecCc
Confidence 36899999864322110 00000011123556666655 4499999999876632111111111 368999999999
Q ss_pred chhhHHHHHHHHHHHHhc---CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhcc
Q psy11347 197 QEVSLLDVRKEIDFCRKV---NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCD 273 (294)
Q Consensus 197 ~~~s~~~~~~~l~~l~~~---~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~ 273 (294)
+..++.++.++++.++.. +.++.++|+|+... ....+..+++.+.++..+++.||++..+.++..
T Consensus 152 ~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~------------~~~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A~~ 219 (273)
T PRK13232 152 ELMAIYAANNICKGLAKFAKGGARLGGIICNSRNV------------DGERELLEAFAKKLGSQLIHFVPRDNIVQRAEI 219 (273)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCCC------------CccHHHHHHHHHHhCCCeEEECCCCHHHHHHHH
Confidence 999999999998888753 56678999998531 112345677778889889999999999999999
Q ss_pred CCccccc--CCCHHHHHHHHhhC
Q psy11347 274 EGTSAID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 274 ~g~~v~~--~~s~~~~~~~~la~ 294 (294)
.|+|++. |+++++++|.+|++
T Consensus 220 ~g~pv~~~~p~s~~a~~y~~La~ 242 (273)
T PRK13232 220 NRKTVIDFDPESNQAKEYLTLAH 242 (273)
T ss_pred cCCCeEEeCCCChHHHHHHHHHH
Confidence 9999997 99999999999874
No 9
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.97 E-value=1.1e-29 Score=222.15 Aligned_cols=226 Identities=13% Similarity=0.135 Sum_probs=158.7
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcC-CCCcEEEEecCCCCCChhhhccccccc-cccccC-------CCCccee
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSN-ESVDVGVLDLDICGPSMPRMMGLLNEQ-VHQSAS-------GWSPVFL 116 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~-~g~~VlliD~D~~~~~l~~~lg~~~~~-~~~~~~-------~~~~~~~ 116 (294)
|+++|+|. +||||||||+|.|||..|+ + .|+||++||+|+|+++...++|..... +..... ..+.+..
T Consensus 1 M~~vIav~-~KGGVGKTT~a~nLA~~La--~~~G~rvLliD~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~ 77 (275)
T PRK13233 1 MTRKIAIY-GKGGIGKSTTTQNTAAAMA--YFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIK 77 (275)
T ss_pred CceEEEEE-cCCCCcHHHHHHHHHHHHH--HhcCCeEEEeccCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCHHHHee
Confidence 57899999 8999999999999999999 7 599999999999987666556654321 111110 1112221
Q ss_pred --ccCeEEEecccccCCCCcceeecCccc--hHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEE
Q psy11347 117 --EENLSVMSIGFLLNSPDDAVIWRGPKK--NTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIV 192 (294)
Q Consensus 117 --~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vli 192 (294)
.++++++|++....... ...... ...+.+.++.+. +.|||||||+++.+....+ ...+....||.+|+
T Consensus 78 ~~~~~l~~ipa~~~~~~~~----~~~~~~~~~~~l~~~l~~~~--~~yD~iliD~~~~~~~~al--~~~~~~~aad~viI 149 (275)
T PRK13233 78 TGFKDIRCVESGGPEPGVG----CAGRGVITAIDLMEENGAYT--DDLDFVFFDVLGDVVCGGF--AMPIRDGKAQEVYI 149 (275)
T ss_pred eCCCCcEEEECCCCCCCCC----CCCcchhHHHHHHHHcCCcc--CCCCEEEEecCCceeeccc--cccchhccCceEEE
Confidence 37899999875443210 001011 112455555564 4499999999654421111 10000016999999
Q ss_pred ecCCchhhHHHHHHHHHHHH----hcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchh
Q psy11347 193 VTTPQEVSLLDVRKEIDFCR----KVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLV 268 (294)
Q Consensus 193 v~~~~~~s~~~~~~~l~~l~----~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~ 268 (294)
|++++..++.++.++++.+. ..+++..|+|+|+... . ...+..+++.+.++.++++.||+++.+
T Consensus 150 p~~p~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~-------~-----~~~~~~e~l~~~~~~~~l~~Ip~~~~v 217 (275)
T PRK13233 150 VASGEMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRNV-------D-----GELELLEEFTDAIGTQMIHFVPRDNIV 217 (275)
T ss_pred eccccHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCC-------C-----cHHHHHHHHHHHcCCceeeecCcchHH
Confidence 99999999999999987773 4467788999997421 0 112356777778888889999999999
Q ss_pred hhhccCCccccc--CCCHHHHHHHHhhC
Q psy11347 269 TRHCDEGTSAID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 269 ~~a~~~g~~v~~--~~s~~~~~~~~la~ 294 (294)
.++...|+|+++ |+++++++|.+|++
T Consensus 218 ~~A~~~g~pv~~~~~~s~~a~~y~~La~ 245 (275)
T PRK13233 218 QKAEFNKKTVVEFDPDCNQAKEYKELAR 245 (275)
T ss_pred HHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 999999999998 99999999999874
No 10
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.97 E-value=1.3e-29 Score=218.18 Aligned_cols=226 Identities=17% Similarity=0.191 Sum_probs=162.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccc------ccccCCCCcc--eecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQV------HQSASGWSPV--FLEE 118 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~------~~~~~~~~~~--~~~~ 118 (294)
|++|+|.|.|||+||||+|.|||..|+ ..|+||++||+|+++ +++..+|.+.... ......|.+. ...+
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la--~~g~~VlliD~D~q~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 77 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALK--LLGEPVLAIDLDPQN-LLRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSD 77 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHH--hCCCcEEEEeCCCcc-hHHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCC
Confidence 578999999999999999999999999 899999999999975 5777887654321 1111123322 2247
Q ss_pred CeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch
Q psy11347 119 NLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE 198 (294)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~ 198 (294)
+++++|.+......... ........++++++.+.... ||+||||+||+.+......+ ..+|.+++|+.++.
T Consensus 78 ~l~~ip~~~~~~~~~~~---~~~~~~~~l~~~l~~l~~~~-~D~viiD~pp~~~~~~~~~l-----~~ad~vii~~~~~~ 148 (246)
T TIGR03371 78 GVLFLPFGDLSADEREA---YQAHDAGWLARLLQQLDLAA-RDWVLIDVPRGPSPITRQAL-----AAADLVLVVVNADA 148 (246)
T ss_pred CeEEecCCCCcHHHHHH---HhhcCHHHHHHHHHhcccCC-CCEEEEECCCCchHHHHHHH-----HhCCeEEEEeCCCH
Confidence 88999875432111110 00112335677888876333 69999999998876554444 57999999999999
Q ss_pred hhHHHHHH-HHHHHHhcCC-CeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee-eccCCCchhhhhccCC
Q psy11347 199 VSLLDVRK-EIDFCRKVNI-PIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL-GSVPIDPLVTRHCDEG 275 (294)
Q Consensus 199 ~s~~~~~~-~l~~l~~~~~-~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l-~~Ip~~~~~~~a~~~g 275 (294)
.++..+.+ +.+.++.... ...++|+|+++. +..+. .+..+.+.+.++.+++ +.||++..+.++...|
T Consensus 149 ~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~-------~~~~~---~~~~~~~~~~~~~~~~~~~I~~~~~~~~a~~~g 218 (246)
T TIGR03371 149 ACYATLHQQALALFAGSGPRIGPHFLINQFDP-------ARQLS---RDVRAVLRQTLGSRLLPFVIHRDEAVSEALARG 218 (246)
T ss_pred HHHHHHHHHHHHHhhcccccccceEEeeccCc-------chhhH---HHHHHHHHHHhcccccCCcccchhhHHHHHHcC
Confidence 99999884 4445553322 247899999873 22222 2334455566787644 7899999999999999
Q ss_pred ccccc--CCCHHHHHHHHhhC
Q psy11347 276 TSAID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 276 ~~v~~--~~s~~~~~~~~la~ 294 (294)
+|+++ |+++++++|++|++
T Consensus 219 ~pv~~~~~~s~~~~~~~~la~ 239 (246)
T TIGR03371 219 TPVLNYAPHSQAAHDIRTLAG 239 (246)
T ss_pred CCccccCCcCHHHHHHHHHHH
Confidence 99998 89999999999874
No 11
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.97 E-value=2.3e-29 Score=220.06 Aligned_cols=225 Identities=16% Similarity=0.142 Sum_probs=154.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc-c---cccc---cCCCCcce--ec
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE-Q---VHQS---ASGWSPVF--LE 117 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~-~---~~~~---~~~~~~~~--~~ 117 (294)
|++|+|. +||||||||+|.|||..|+ +.|+||++||+|+|+++...+++.... . +... ......+. ..
T Consensus 1 m~~iav~-~KGGVGKTT~~~nLA~~La--~~G~rVLlID~Dpq~~~t~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~ 77 (274)
T PRK13235 1 MRKVAIY-GKGGIGKSTTTQNTVAGLA--EMGKKVMVVGCDPKADSTRLLLGGLAQKTVLDTLREEGEDVELEDIRKEGY 77 (274)
T ss_pred CCEEEEe-CCCCccHHHHHHHHHHHHH--HCCCcEEEEecCCcccccccccCCCCCccHHHHHHhcCCCCCHHHHhhcCC
Confidence 4789999 7999999999999999999 899999999999998776665543222 1 1111 01111111 13
Q ss_pred cCeEEEecccccCCCCcceeecCccchHHHH-HHHHhhc---cCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEe
Q psy11347 118 ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIR-QFLSEVD---WGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVV 193 (294)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~l~---~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv 193 (294)
++++++|++........ ... ...++ .+++.+. ..++|||||||+++.+....+....++ ..||.+++|
T Consensus 78 ~~l~~ip~~~~~~~~~~----~~~--~~~~~~~~~~~l~~~~~~~~yD~ilID~~~~~~~~~l~~~~a~--~aad~vlIp 149 (274)
T PRK13235 78 GGTRCTESGGPEPGVGC----AGR--GIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCGGFAMPIRD--GKAEEIYIV 149 (274)
T ss_pred CCCEEEeCCCCCCCCCC----CCC--ceeehhHHHHhhchhhccCCCCEEEEECCCCCccCCccccccc--ccccEEEEE
Confidence 68999987643332110 000 10111 2333331 113499999999866532111111111 269999999
Q ss_pred cCCchhhHHHHHHHHHHHHh----cCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhh
Q psy11347 194 TTPQEVSLLDVRKEIDFCRK----VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVT 269 (294)
Q Consensus 194 ~~~~~~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~ 269 (294)
++++..++.++..+++.+++ .+++..++|+|+... ....+..+++.+.++.++++.||++..+.
T Consensus 150 ~~~e~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~~~------------~~~~e~~~~l~~~~~~~ll~~Ip~~~~v~ 217 (274)
T PRK13235 150 CSGEMMAMYAANNICKGILKYADAGGVRLGGLICNSRKV------------DNEREMIEELARKIGTQMIHFVPRDNFVQ 217 (274)
T ss_pred ecCchhHHHHHHHHHHHHHHHhhcCCCceeEEEEecCCC------------CchHHHHHHHHHHcCCceEEeCCCCHHHH
Confidence 99999999999988887753 345677899997421 11234566777778888889999999999
Q ss_pred hhccCCccccc--CCCHHHHHHHHhhC
Q psy11347 270 RHCDEGTSAID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 270 ~a~~~g~~v~~--~~s~~~~~~~~la~ 294 (294)
++...|+|+++ |+++++++|++|++
T Consensus 218 ~A~~~g~pv~~~~p~s~~a~~y~~La~ 244 (274)
T PRK13235 218 RAEINRKTVIEYDPTHPQADEYRALAR 244 (274)
T ss_pred HHHhcCCcEEEECCCCHHHHHHHHHHH
Confidence 99999999998 89999999999874
No 12
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.97 E-value=3.1e-29 Score=218.86 Aligned_cols=227 Identities=18% Similarity=0.171 Sum_probs=155.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----ccccc----CCCCcce--e
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQSA----SGWSPVF--L 116 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~~~----~~~~~~~--~ 116 (294)
|++|+|. +||||||||+|.|||.+|+ ..|+||++||+|+|++....+++..... ..... ..+.++. .
T Consensus 1 m~~iav~-~KGGvGKTT~~~nLA~~La--~~G~kVlliD~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 77 (270)
T cd02040 1 MRQIAIY-GKGGIGKSTTTQNLSAALA--EMGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVIFEG 77 (270)
T ss_pred CcEEEEE-eCCcCCHHHHHHHHHHHHH--hCCCeEEEEEcCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhheeec
Confidence 5789998 6999999999999999999 8999999999999986655544422211 11100 0222222 2
Q ss_pred ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC
Q psy11347 117 EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP 196 (294)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~ 196 (294)
.++++++|++.......... ........+.+.+..+. +.|||||||+++.+....+.....+ ..+|.+|+|+++
T Consensus 78 ~~~l~~ip~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~--~~yD~viID~~g~~~~~~~~~~~~~--~aaD~vlip~~p 151 (270)
T cd02040 78 FGGIKCVESGGPEPGVGCAG--RGVITAINLLEELGAYE--DDLDFVIYDVLGDVVCGGFAMPIRE--GKAQEIYIVTSG 151 (270)
T ss_pred CCCeEEEeCCCCCCCCCCcC--cchhhHHHHHHhcCccc--cCCCEEEEecccCcccCCccccccc--ccccEEEEEecC
Confidence 37899999886554322110 00000111222333333 3499999999865531111111111 369999999999
Q ss_pred chhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhc
Q psy11347 197 QEVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHC 272 (294)
Q Consensus 197 ~~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~ 272 (294)
+..++.++.++++.+... +.+..++|.|+... ....+..+++.+.++.++++.||++..+.++.
T Consensus 152 ~~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~~------------~~~~~~~~~l~~~~g~~vl~~Ip~~~~v~~A~ 219 (270)
T cd02040 152 EMMALYAANNICKGILKYAKSGGVRLGGLICNSRNT------------DREDELIDAFAKRLGTQMIHFVPRDNVVQRAE 219 (270)
T ss_pred chHHHHHHHHHHHHHHHhCccCCCceEEEEEecCCC------------hhHHHHHHHHHHHcCCCeEeecCCcHHHHHHH
Confidence 999999998888777543 46677888887431 11134567777888999999999999999999
Q ss_pred cCCccccc--CCCHHHHHHHHhhC
Q psy11347 273 DEGTSAID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 273 ~~g~~v~~--~~s~~~~~~~~la~ 294 (294)
..|+|+++ |.++++++|++|++
T Consensus 220 ~~g~pv~~~~p~~~aa~~~~~La~ 243 (270)
T cd02040 220 LRGKTVIEYDPESKQADEYRELAR 243 (270)
T ss_pred HcCCceEEecCCCHHHHHHHHHHH
Confidence 99999998 89999999999874
No 13
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.97 E-value=3.5e-29 Score=220.66 Aligned_cols=226 Identities=14% Similarity=0.090 Sum_probs=156.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc-cccc--------cCCCCcce--
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ-VHQS--------ASGWSPVF-- 115 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~-~~~~--------~~~~~~~~-- 115 (294)
+++|+| +|||||||||++.|||..|+ +.|+||+++|+|++.++...+++..... +... ...+.++.
T Consensus 6 ~~~~~~-~GKGGVGKTt~a~NLA~~La--~~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i~~ 82 (296)
T PRK13236 6 IRQIAF-YGKGGIGKSTTSQNTLAAMA--EMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVMLT 82 (296)
T ss_pred ceEEEE-ECCCcCCHHHHHHHHHHHHH--HCCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhhee
Confidence 588888 78999999999999999999 8999999999999999988888765532 1111 11222222
Q ss_pred eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecC
Q psy11347 116 LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTT 195 (294)
Q Consensus 116 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~ 195 (294)
..+|++++|++....... .........+..+.....+.+ ||||+||+++............+ ..||.+|+|++
T Consensus 83 ~~~gv~llpa~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~-yD~vliD~~~~~~~~~~~~~~~l--~aAD~vIIvtt 155 (296)
T PRK13236 83 GFRGVKCVESGGPEPGVG----CAGRGIITAINFLEENGAYQD-LDFVSYDVLGDVVCGGFAMPIRE--GKAQEIYIVTS 155 (296)
T ss_pred CCCCeEEEECCCCCCCCC----CcceeehhhhHHHHhcCcccc-CCEEEEeccccceeccccccchh--ccCCEEEEecC
Confidence 247999999874332211 111111112222222222234 99999999754422111111111 37999999999
Q ss_pred CchhhHHHHHHHHHHH----HhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhh
Q psy11347 196 PQEVSLLDVRKEIDFC----RKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRH 271 (294)
Q Consensus 196 ~~~~s~~~~~~~l~~l----~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a 271 (294)
++..++.++.++++.+ ...+++..++|+||.+ ... .....+++.+.++..++++||++..+.++
T Consensus 156 pe~~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~-------~~~-----~~~ile~l~~~~g~~vl~~Ip~~~~v~eA 223 (296)
T PRK13236 156 GEMMAMYAANNIARGILKYAHTGGVRLGGLICNSRN-------VDR-----EIELIETLAKRLNTQMIHFVPRDNIVQHA 223 (296)
T ss_pred cchHHHHHHHHHHHHHHHHhhCCCceeEEEEecCCC-------Ccc-----hHHHHHHHHHHhCccceeeCCCChHHHHH
Confidence 9999998887554433 3446788899999843 111 11345777778898899999999999999
Q ss_pred ccCCccccc--CCCHHHHHHHHhhC
Q psy11347 272 CDEGTSAID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 272 ~~~g~~v~~--~~s~~~~~~~~la~ 294 (294)
...|+|++. |+++++++|++|++
T Consensus 224 ~~~~~Pv~~~~p~s~~a~~y~~La~ 248 (296)
T PRK13236 224 ELRRMTVNEYAPDSNQGNEYRALAK 248 (296)
T ss_pred HHcCCChhhcCCCCHHHHHHHHHHH
Confidence 999999998 99999999999874
No 14
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.96 E-value=5.2e-29 Score=213.61 Aligned_cols=223 Identities=26% Similarity=0.381 Sum_probs=172.5
Q ss_pred CceEEEEEecCCCchHHHHHHHH-HHHHhhcCCCCcEEEEecCCCCCChhhhcccccccc-----ccccCCCCccee--c
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLL-ARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQV-----HQSASGWSPVFL--E 117 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~L-A~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~-----~~~~~~~~~~~~--~ 117 (294)
|+++|+|.|+|||+||||+|+|| |..++ ..+++|+++|+|+..++++.+||...... ......+.++.. .
T Consensus 1 ~~~~Iav~SgKGGvGKTtitanlga~~~~--~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~ 78 (262)
T COG0455 1 MTKVIAVVSGKGGVGKTTITANLGAALAA--LGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETP 78 (262)
T ss_pred CCEEEEEEecCCCccHHHHHHhHHHHHHh--hCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecC
Confidence 57899999999999999999999 55555 77888899999999999999999998532 223344444332 3
Q ss_pred -cCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC
Q psy11347 118 -ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP 196 (294)
Q Consensus 118 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~ 196 (294)
.+++++|.+....... ......+..+++.+. +.|||||+|+|++++.+.+..+ ..+|.+|+|++|
T Consensus 79 ~~gl~vipg~~~~~~~~-------~~~~~~~~~~~~~l~--~~~D~iliD~~aGl~~~~~~~~-----~~sd~~viVt~p 144 (262)
T COG0455 79 QDGLYVLPGGSGLEDLA-------KLDPEDLEDVIKELE--ELYDYILIDTGAGLSRDTLSFI-----LSSDELVIVTTP 144 (262)
T ss_pred cCCEEEeeCCCChHHHh-------hcCHHHHHHHHHHHH--hcCCEEEEeCCCCccHHHHHHH-----HhcCcEEEEeCC
Confidence 8999999986654332 223447778888887 4489999999999987665544 456999999999
Q ss_pred chhhHHHHHHHHHHHHhcCCCeeE--EEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccC
Q psy11347 197 QEVSLLDVRKEIDFCRKVNIPIIG--VVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDE 274 (294)
Q Consensus 197 ~~~s~~~~~~~l~~l~~~~~~~~~--vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~ 274 (294)
+..++.++..+++++.+.+....+ +|+||++.. .+..+.. ....++. ...+.+.+||+++.+.++...
T Consensus 145 e~~si~~A~~~i~~~~~~~~~~~~~~vV~N~v~~~----~e~~~~~----~~~~~~~--~~~~~~~~i~~~~~v~~a~~~ 214 (262)
T COG0455 145 EPTSITDAYKTIKILSKLGLDLLGRRVVLNRVRST----KEGVDVA----ALLIQVV--KQVPVLQVIPFDPEVRRALAE 214 (262)
T ss_pred CcchHHHHHHHHHHHHHcCCccccceEEEEecccc----cchhHHH----HHHHHHH--HhCCceeEeccChHHHHHhhc
Confidence 999999999999999999998777 999998621 0111111 1122222 234477789999999999999
Q ss_pred Cccccc--CCCHHHHHHHHhhC
Q psy11347 275 GTSAID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 275 g~~v~~--~~s~~~~~~~~la~ 294 (294)
|.|+.. |++++++++++||.
T Consensus 215 g~p~~~~~p~s~as~ai~~lA~ 236 (262)
T COG0455 215 GKPIVLYSPNSKASQAIKELAA 236 (262)
T ss_pred CCcEEEeCCCCHHHHHHHHHHH
Confidence 999998 99999999999873
No 15
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.96 E-value=2.1e-29 Score=221.95 Aligned_cols=225 Identities=15% Similarity=0.138 Sum_probs=159.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----cccc-----cCCCCcce--
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQS-----ASGWSPVF-- 115 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~~-----~~~~~~~~-- 115 (294)
|++|+|. +||||||||++.|||..|+ +.|+||++||+|++.++...+++..... +... ...+.++.
T Consensus 4 ~~~iai~-~KGGvGKTt~~~nLa~~la--~~g~kVLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (295)
T PRK13234 4 LRQIAFY-GKGGIGKSTTSQNTLAALV--EMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKI 80 (295)
T ss_pred ceEEEEE-CCCCccHHHHHHHHHHHHH--HCCCeEEEEecccccccccccccCCCCCcHHHHHHhcCCcccccHHHHhee
Confidence 5899997 9999999999999999999 8999999999999988876555543321 1110 11122221
Q ss_pred eccCeEEEecccccCCCCcceeecCccchHHHH-HHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEec
Q psy11347 116 LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIR-QFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVT 194 (294)
Q Consensus 116 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~ 194 (294)
..+|++++|++...... ........++ ..++.+...++|||||||+++.+.... ....+....||.+|+|+
T Consensus 81 ~~~gl~lipa~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~yD~IlID~~~~~~~na--l~~~~~~~aAD~vIIPv 152 (295)
T PRK13234 81 GYKGIKCVESGGPEPGV------GCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCGG--FAMPIRENKAQEIYIVM 152 (295)
T ss_pred cCCCeEEEECCCCCCCC------CCCcceeeeHHHHHHHcCCCccCCEEEEEcCCCceECC--CccccccccCceEEEec
Confidence 23799999987533321 1111122334 356654322349999999975542111 11101002699999999
Q ss_pred CCchhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhh
Q psy11347 195 TPQEVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTR 270 (294)
Q Consensus 195 ~~~~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~ 270 (294)
+++..++.++.++++.+.+. +++..++|+|+.+. .. ..+..+++.+.++.++++.||++..+.+
T Consensus 153 ~pe~~Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~rt---------~~---~~~~~e~l~e~~g~~ll~~Ip~d~~V~e 220 (295)
T PRK13234 153 SGEMMALYAANNIAKGILKYANSGGVRLGGLICNERQT---------DR---ELELAEALAARLGSKLIHFVPRDNIVQH 220 (295)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC---------ch---HHHHHHHHHHHhCCceEEECCCchHHHH
Confidence 99999999999998888653 46688999997541 11 1334566777788888899999999999
Q ss_pred hccCCccccc--CCCHHHHHHHHhhC
Q psy11347 271 HCDEGTSAID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 271 a~~~g~~v~~--~~s~~~~~~~~la~ 294 (294)
+...|+|+++ |.++++++|++|++
T Consensus 221 A~~~g~pv~~~~p~s~aa~~y~~La~ 246 (295)
T PRK13234 221 AELRRMTVIEYAPDSKQAGEYRALAE 246 (295)
T ss_pred HHHcCCceEEECCCCHHHHHHHHHHH
Confidence 9999999998 89999999999874
No 16
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.96 E-value=1.7e-29 Score=212.59 Aligned_cols=223 Identities=21% Similarity=0.236 Sum_probs=164.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccc------cccCCCCc--ceecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVH------QSASGWSP--VFLEE 118 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~------~~~~~~~~--~~~~~ 118 (294)
|++|++.|.||||||||+|+|||..|+ ..|++|++||+||++ .+...||.+..... .....|.. ....+
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~--~~G~~VlaID~dpqN-~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~ 77 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALA--RLGESVLAIDLDPQN-LLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSD 77 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHH--HCCCcEEEEeCCcHH-HHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCC
Confidence 789999999999999999999999999 999999999999975 67778888765211 12345544 34569
Q ss_pred CeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch
Q psy11347 119 NLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE 198 (294)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~ 198 (294)
+++++|.|.........+.. .......+.+.+..+.....||+||+|+|++.+......+ ..+|.+++|+.++.
T Consensus 78 g~~~LPfG~l~~~~~~~~~~-l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g~~~~~~~al-----~~aD~vL~V~~~Da 151 (243)
T PF06564_consen 78 GVDFLPFGQLTEAEREAFEQ-LAQDPQWLARALAALKALGPYDWILIDTPPGPSPYTRQAL-----AAADLVLVVVNPDA 151 (243)
T ss_pred CCEEEcCCCCCHHHHHHHHH-hhcCHHHHHHHHHHHhccCCCCEEEEeCCCCCcHHHHHHH-----HhCCeEEEEeCCCH
Confidence 99999998543322221111 1222345677777777334499999999998876554444 57999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccCCccc
Q psy11347 199 VSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSA 278 (294)
Q Consensus 199 ~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~~v 278 (294)
.+.....+ +.-....++|+|+++ ..+++.+ +...-+.+..+-.+.++|++|+.+.||...+.|+
T Consensus 152 ~s~~~L~q------~~l~~~~~~liNq~~-------~~s~l~~---D~~~~~~~~l~~llp~~IHrDeAv~EAlA~~~~v 215 (243)
T PF06564_consen 152 ASHARLHQ------RALPAGHRFLINQYD-------PASQLQR---DLLQVWRQSLGRLLPGVIHRDEAVAEALASGQPV 215 (243)
T ss_pred HHHHHHHH------hcccCCcEEEEeccC-------ccchHHH---HHHHHHHHhhccccceeeecchHHHHHHhcCCCc
Confidence 88654332 111224689999998 4566663 3333444555655557899999999999999999
Q ss_pred cc--CCCHHHHHHHHhhC
Q psy11347 279 ID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 279 ~~--~~s~~~~~~~~la~ 294 (294)
.+ |.|.++++|+.||.
T Consensus 216 ~~yaP~S~Aa~D~~~LA~ 233 (243)
T PF06564_consen 216 GEYAPHSQAAEDIQTLAN 233 (243)
T ss_pred cccCccCHHHHHHHHHHH
Confidence 99 99999999999873
No 17
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.96 E-value=1.3e-28 Score=216.04 Aligned_cols=218 Identities=17% Similarity=0.118 Sum_probs=153.1
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccccccc---------CCCCccee--cc
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA---------SGWSPVFL--EE 118 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~---------~~~~~~~~--~~ 118 (294)
|+|.+ ||||||||++.|||..|+ +.|+||++||+|++++....+.|.....+.... ..+.++.. .+
T Consensus 3 ia~~g-KGGVGKTTta~nLA~~La--~~G~rVLlID~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~ 79 (290)
T CHL00072 3 LAVYG-KGGIGKSTTSCNISIALA--RRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKGYG 79 (290)
T ss_pred EEEEC-CCCCcHHHHHHHHHHHHH--HCCCeEEEEeccCCCcccccccCcCCCCHHHHHhhcccccccCChhheEEeCCC
Confidence 66665 999999999999999999 899999999999997544333343222111000 11112211 37
Q ss_pred CeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch
Q psy11347 119 NLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE 198 (294)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~ 198 (294)
+++++|++..+......... .. ....+++.+...++|||||||+++++.... +..++ ..||.+|+|+.++.
T Consensus 80 ~l~lip~~~~~~~~~~~~~~--~~---~~~~ll~~l~~~~~yD~IiIDt~~~l~~~a--~~aal--~~AD~viIp~~p~~ 150 (290)
T CHL00072 80 GVDCVEAGGPPAGAGCGGYV--VG---ETVKLLKELNAFYEYDIILFDVLGDVVCGG--FAAPL--NYADYCIIITDNGF 150 (290)
T ss_pred CeEEEeCCCCCCccchhhcc--cH---HHHHHHHHhhccccCCEEEEecCCcceech--hhhhh--hcCCEEEEEecCCH
Confidence 89999988765433321110 00 111233333211239999999987764321 11223 57999999999999
Q ss_pred hhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccC
Q psy11347 199 VSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDE 274 (294)
Q Consensus 199 ~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~ 274 (294)
.+++++.++++.++.. +++..++|+||++. ...++++.+.++.++++.||++..+.++...
T Consensus 151 ~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~---------------~~~~~~~~~~~~~~vl~~Ip~~~~v~~A~~~ 215 (290)
T CHL00072 151 DALFAANRIAASVREKARTHPLRLAGLVGNRTSK---------------RDLIDKYVEACPMPVLEVLPLIEDIRVSRVK 215 (290)
T ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc---------------hhHHHHHHHHcCCceEEECCCChHHHHHHhC
Confidence 9999999999888654 46678999999752 1245667778899999999999999999999
Q ss_pred Cccccc--CCCH----HHHHHHHhhC
Q psy11347 275 GTSAID--TPSA----CVDAIQQIVQ 294 (294)
Q Consensus 275 g~~v~~--~~s~----~~~~~~~la~ 294 (294)
|+|+++ |+++ ++++|++|++
T Consensus 216 g~pv~~~~p~s~~~~~~a~~y~~La~ 241 (290)
T CHL00072 216 GKTLFEMVESEPSLNYVCDYYLNIAD 241 (290)
T ss_pred CCceEEeCCCCcchhHHHHHHHHHHH
Confidence 999998 8888 5899999874
No 18
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.96 E-value=7.9e-29 Score=215.61 Aligned_cols=226 Identities=16% Similarity=0.153 Sum_probs=157.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccC-----CCCcc--eeccC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSAS-----GWSPV--FLEEN 119 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~-----~~~~~--~~~~~ 119 (294)
|++|+|. +||||||||+|.|||.+|+ +.| ||++||+|++++.+..+++.....+..... .+..+ ...++
T Consensus 2 ~~~iav~-~KGGvGKTT~a~nLA~~La--~~G-rVLliD~Dpq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (264)
T PRK13231 2 MKKIAIY-GKGGIGKSTTVSNMAAAYS--NDH-RVLVIGCDPKADTTRTLCGKRIPTVLDTLKDNRKPELEDIIHEGFNG 77 (264)
T ss_pred ceEEEEE-CCCCCcHHHHHHHHhcccC--CCC-EEEEEeEccCcccchhhhcCCccHHHHHHhhcCCCChhHhheeCCCC
Confidence 6889999 6999999999999999999 889 999999999986555555543221111110 12221 12468
Q ss_pred eEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchh
Q psy11347 120 LSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEV 199 (294)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~ 199 (294)
++++|++........ ..........+.+.+..+. ++|||||||+++.+....+. ..+....+|.+|+|++++..
T Consensus 78 l~~i~~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~--~~yD~ViIDt~~~~~~~~~~--~~~~~~aaD~vlip~~p~~~ 151 (264)
T PRK13231 78 ILCVESGGPEPGVGC--AGRGVIVAMNLLENLGVFD--EDIDVVIYDVLGDVVCGGFS--VPLREDYADEVYIVTSGEYM 151 (264)
T ss_pred eEEEEcCCCCCCCCC--cCceeeehhhhHHhhcccc--CCCCEEEEecCCCceEcccc--ccccccccceeEEEecCchh
Confidence 889988744322110 0000001112344555555 44999999998755211111 01101379999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccCCcccc
Q psy11347 200 SLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI 279 (294)
Q Consensus 200 s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~~v~ 279 (294)
++.++.++++.++..+.+..++|.|+.+. . ...+..+++.+.++.++++.||++..+.++...|+|++
T Consensus 152 si~~~~~~~~~i~~~~~~~~~vv~~~~~~-------~-----~~~~~~~~l~~~~~~~vl~~I~~~~~v~~a~~~g~~v~ 219 (264)
T PRK13231 152 SLYAANNIARGIKKLKGKLGGIICNCRGI-------D-----NEVEIVSEFASRIGSRIIGVIPRSNLVQESELDAKTVV 219 (264)
T ss_pred HHHHHHHHHHHHHHcCCcceEEEEcCCCC-------c-----cHHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHcCCcee
Confidence 99999999999987776667888887541 1 12345677777888888899999999999999999999
Q ss_pred c--CCCHHHHHHHHhhC
Q psy11347 280 D--TPSACVDAIQQIVQ 294 (294)
Q Consensus 280 ~--~~s~~~~~~~~la~ 294 (294)
+ |.++++++|++|++
T Consensus 220 ~~~~~~~aa~~~~~la~ 236 (264)
T PRK13231 220 ETFPESEQASVYRKLAN 236 (264)
T ss_pred EeCCCChHHHHHHHHHH
Confidence 8 99999999999874
No 19
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.96 E-value=2.7e-28 Score=212.98 Aligned_cols=221 Identities=14% Similarity=0.090 Sum_probs=154.4
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----ccc------ccCCCCcce
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQ------SASGWSPVF 115 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~------~~~~~~~~~ 115 (294)
|+++|+|. +||||||||++.|||.+|+ ..|+||++||+|+|+ ++...++..... +.. ....+.++.
T Consensus 1 m~~iIav~-~KGGVGKTT~~~nLA~~la--~~G~kVLliD~Dpq~-~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i 76 (270)
T PRK13185 1 MALVLAVY-GKGGIGKSTTSSNLSAAFA--KLGKKVLQIGCDPKH-DSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFV 76 (270)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHH--HCCCeEEEEeccCCc-chhhhhcCCCCCcHHHHHHhccccccCCCHHHhe
Confidence 57899998 6999999999999999999 899999999999986 444555432211 110 011122221
Q ss_pred --eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEe
Q psy11347 116 --LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVV 193 (294)
Q Consensus 116 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv 193 (294)
..+|++++|++..+.+...... .......++..+...++|||||||+++...... +..++ ..+|.+|+|
T Consensus 77 ~~~~~~l~~ip~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~yD~viIDt~g~~~~~~--~~~~l--~~AD~viip 147 (270)
T PRK13185 77 YEGYNGVDCVEAGGPPAGTGCGGY-----VVGETVKLLKEHHLLDDYDVILFDVLGDVVCGG--FAAPL--QYADYALIV 147 (270)
T ss_pred eeCCCCcEEEECCCCCCCCCccch-----hHHHHHHHHHhcCccccCCEEEEecCCCcccCc--ccchh--hhCcEEEEE
Confidence 1379999998866543321110 001111233332222449999999987664321 11222 479999999
Q ss_pred cCCchhhHHHHHHHHHHHHh----cCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhh
Q psy11347 194 TTPQEVSLLDVRKEIDFCRK----VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVT 269 (294)
Q Consensus 194 ~~~~~~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~ 269 (294)
+.++..++..+.++++.++. .+++..++|+|+++. ....+++.+.++.++++.||++..+.
T Consensus 148 ~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~---------------~~~~~~~~~~~g~~vl~~Ip~~~~i~ 212 (270)
T PRK13185 148 TANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG---------------TDLIDKFNEAVGLKVLAHVPDLDAIR 212 (270)
T ss_pred ecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh---------------HHHHHHHHHHcCCCEEEECCCCcccC
Confidence 99999999999998887753 355678999999651 23457788888999999999999999
Q ss_pred hhccCCccccc--CC----CHHHHHHHHhhC
Q psy11347 270 RHCDEGTSAID--TP----SACVDAIQQIVQ 294 (294)
Q Consensus 270 ~a~~~g~~v~~--~~----s~~~~~~~~la~ 294 (294)
++...|+|+++ |+ ++++++|++|++
T Consensus 213 ~A~~~G~pv~~~~~~~~~~~~aa~~~~~la~ 243 (270)
T PRK13185 213 RSRLKGKTLFEMEETDPGLEEVQNEYLRLAE 243 (270)
T ss_pred hHHHcCCcHhhhCcCCccchHHHHHHHHHHH
Confidence 99999999998 54 358888988863
No 20
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.96 E-value=1.7e-28 Score=215.14 Aligned_cols=228 Identities=17% Similarity=0.149 Sum_probs=150.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccccccc-------CCCCcce--ec
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA-------SGWSPVF--LE 117 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~-------~~~~~~~--~~ 117 (294)
|++|+|. +||||||||+|.|||.+|+ ..|+||++||+|++++....+.+.....+.... ..+.++. ..
T Consensus 1 ~~~i~~~-gKGGVGKTT~a~nLA~~La--~~G~rVLliD~Dpq~n~t~~l~~~~~~~l~d~~~~~~~~~~~~~~~i~~~~ 77 (279)
T PRK13230 1 MRKFCFY-GKGGIGKSTTVCNIAAALA--ESGKKVLVVGCDPKADCTRNLVGEKIPTVLDVLREKGIDNLGLEDIIYEGF 77 (279)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHH--hCCCEEEEEeeCCcccccccccCccCCCHHHHHHhcCCCCCCHHHheeeCC
Confidence 6789999 7999999999999999999 899999999999987654443332111111111 1112211 24
Q ss_pred cCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc
Q psy11347 118 ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ 197 (294)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~ 197 (294)
++++++|++.......... ........+.+.+..+.. .+|||||||+++......+.....+ ..||.+|+|++++
T Consensus 78 ~~l~lipa~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~-~~yD~viID~~~~~~~~~l~~~~~~--~aAD~vlIp~~p~ 152 (279)
T PRK13230 78 NGIYCVESGGPEPGYGCAG--RGVITAIDLLKKLGVFEE-LGPDVVIYDILGDVVCGGFAMPLQK--GLADDVYIVTTCD 152 (279)
T ss_pred CCcEEEECCCCCCCCCcCC--cchhhHHHHHHHcCcccc-cCCCEEEEecCCccccCCccccccc--cccceEEEeccch
Confidence 7899999875543211000 000000011122222221 2399999999865431111111112 3689999999999
Q ss_pred hhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhcc
Q psy11347 198 EVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCD 273 (294)
Q Consensus 198 ~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~ 273 (294)
..++.++..+++.+... +.++.+++.|+-. ... ..+..+++.+.++.++++.||++..+.++..
T Consensus 153 ~~si~~~~~ll~~i~~~~~~~~~~i~gIv~n~r~----------~~~--~~~~~e~l~~~~g~~vl~~Ip~~~~v~eA~~ 220 (279)
T PRK13230 153 PMAIYAANNICKGIKRFAKRGKSALGGIIYNGRS----------VID--APDIVEEFAKKIGTNVIGKIPMSNIITEAEI 220 (279)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcceEEEEeccC----------CCc--hhHHHHHHHHHhCCcEEEECCCChHHHHHHH
Confidence 99999999888777533 4556667655311 111 1245677888899999999999999999999
Q ss_pred CCccccc--CCCHHHHHHHHhhC
Q psy11347 274 EGTSAID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 274 ~g~~v~~--~~s~~~~~~~~la~ 294 (294)
.|+|+++ |.++++++|++|++
T Consensus 221 ~g~pv~~~~p~~~~a~~y~~La~ 243 (279)
T PRK13230 221 YGKTVIEYAPDSEISNIFRELAE 243 (279)
T ss_pred cCCeEEEeCCCCHHHHHHHHHHH
Confidence 9999998 89999999999874
No 21
>PRK10037 cell division protein; Provisional
Probab=99.96 E-value=1.3e-28 Score=212.50 Aligned_cols=219 Identities=14% Similarity=0.104 Sum_probs=147.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc------cccccCCCCcc--eecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ------VHQSASGWSPV--FLEE 118 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~------~~~~~~~~~~~--~~~~ 118 (294)
|++|+|.|.||||||||++.|||..|+ ..|+||++||+|+++ ++...||..... .......|.+. ...+
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La--~~G~rVLlID~D~q~-~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQ--MLGENVLVIDACPDN-LLRLSFNVDFTHRQGWARALLDGQDWRDAGLRYTS 77 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHH--hcCCcEEEEeCChhh-hHHHHhCCCccccchHHHHHhcCCCchhhhccccC
Confidence 569999999999999999999999999 899999999999985 666667764321 01111233332 2237
Q ss_pred CeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch
Q psy11347 119 NLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE 198 (294)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~ 198 (294)
+++++|++. ..................+.+.++.++..+.|||||||+||+.+......+ ..||.+|+|+.++.
T Consensus 78 ~l~iip~~~-~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~~~~~al-----~aaD~vlvpv~~~~ 151 (250)
T PRK10037 78 QLDLLPFGQ-LSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASPLTRQLL-----SLCDHSLAIVNVDA 151 (250)
T ss_pred CeEEEcCCC-CCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccHHHHHHH-----HhCCEEEEEcCcCH
Confidence 899999862 111110000000011124667777775213499999999999875444333 57999999999987
Q ss_pred hhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHh---hcCCcee-eccCCCchhhhhccC
Q psy11347 199 VSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCA---ELSVPFL-GSVPIDPLVTRHCDE 274 (294)
Q Consensus 199 ~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~g~~~l-~~Ip~~~~~~~a~~~ 274 (294)
.+. ++..+........+++|+++. .. +..+++.+ ..+.+++ ..||+++.+.++...
T Consensus 152 ~~~------i~~~~~~~~~~~~i~~n~~~~-------~~-------~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~a~~~ 211 (250)
T PRK10037 152 NCH------IRLHQQALPAGAHILINDLRI-------GS-------QLQDDLYQLWLQSQRRLLPMLIHRDEAMAECLAA 211 (250)
T ss_pred HHH------HhhhccccCCCeEEEEecCCc-------cc-------HHHHHHHHHHHHhcccccCccccCchhHHHHHhc
Confidence 652 333333222345678888752 11 22233333 2366677 489999999999999
Q ss_pred Cccccc--CCCHHHHHHHHhhC
Q psy11347 275 GTSAID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 275 g~~v~~--~~s~~~~~~~~la~ 294 (294)
|+|+++ |+++++++|++|++
T Consensus 212 g~~v~~~~~~s~aa~~~~~l~~ 233 (250)
T PRK10037 212 KQPLGEYRSDSLAAEEILTLAN 233 (250)
T ss_pred CCcchhcCCcCHHHHHHHHHHH
Confidence 999998 99999999999873
No 22
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.96 E-value=5.2e-28 Score=211.66 Aligned_cols=226 Identities=16% Similarity=0.155 Sum_probs=151.3
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----ccccc----CCCCcce--ec
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQSA----SGWSPVF--LE 117 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~~~----~~~~~~~--~~ 117 (294)
+.|+|. |||||||||+|.|||..|+ ..|+||++||+|+|+++...+++..... +.... ..+.+.. ..
T Consensus 1 ~~ia~~-gKGGVGKTT~a~nLA~~La--~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~ 77 (275)
T TIGR01287 1 RQIAIY-GKGGIGKSTTTQNIAAALA--EMGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIKEGF 77 (275)
T ss_pred CeeEEe-CCCcCcHHHHHHHHHHHHH--HCCCeEEEEeCCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHHeeeeCC
Confidence 357776 6999999999999999999 8999999999999987655554533321 11110 1112222 23
Q ss_pred cCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc
Q psy11347 118 ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ 197 (294)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~ 197 (294)
++++++|++........ ..........+.+.+..+. ++|||||||+++......+.....+ ..+|.+|+|++++
T Consensus 78 ~~l~~i~~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~--~~yD~iiIDt~~~~~~~~~~~~~~~--~aAD~viip~~p~ 151 (275)
T TIGR01287 78 GGIRCVESGGPEPGVGC--AGRGVITAINLLEELGAYE--DDLDFVFYDVLGDVVCGGFAMPIRE--GKAQEIYIVTSGE 151 (275)
T ss_pred CCEEEEeCCCCCccCCC--ccchhhhHHHHHHHhhhhh--ccCCEEEEeccCcceecceeecccc--ccccEEEEEecch
Confidence 68999998754432110 0000000001222234444 3499999999865532111111111 3689999999999
Q ss_pred hhhHHHHHHHHHHHHh----cCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhcc
Q psy11347 198 EVSLLDVRKEIDFCRK----VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCD 273 (294)
Q Consensus 198 ~~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~ 273 (294)
..++.++.++++.+.. .+.+..++|.|+.+ .....+..+++.+.++.++++.||++..+.+|..
T Consensus 152 ~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~~~------------~~~~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A~~ 219 (275)
T TIGR01287 152 MMALYAANNICKGILKYAKSGGVRLGGLICNSRN------------VDDEKELIDEFAKKLGTQLIHFVPRSNIVQKAEI 219 (275)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcCCC------------CchHHHHHHHHHHHhCCceEEECCCChHHHHHHH
Confidence 9999999888776532 35566778888632 1112334567777888888999999999999999
Q ss_pred CCccccc--CCCHHHHHHHHhhC
Q psy11347 274 EGTSAID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 274 ~g~~v~~--~~s~~~~~~~~la~ 294 (294)
.|+|+++ |.++++++|+++++
T Consensus 220 ~g~pv~~~~p~s~~a~~~~~la~ 242 (275)
T TIGR01287 220 RKMTVIEYDPESEQANEYRELAK 242 (275)
T ss_pred cCCceEEeCCCCHHHHHHHHHHH
Confidence 9999998 99999999999874
No 23
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.96 E-value=1e-27 Score=209.12 Aligned_cols=218 Identities=17% Similarity=0.122 Sum_probs=150.4
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc-c---ccc------ccCCCCcce--e
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE-Q---VHQ------SASGWSPVF--L 116 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~-~---~~~------~~~~~~~~~--~ 116 (294)
+|+|. +||||||||+|.|||.+|+ +.|+||++||+|++.+ +...|+.... . +.. ....+.++. .
T Consensus 2 ~i~~~-gKGGVGKTT~~~nLA~~La--~~g~rVLliD~D~q~~-~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~ 77 (268)
T TIGR01281 2 ILAVY-GKGGIGKSTTSSNLSVAFA--KLGKRVLQIGCDPKHD-STFTLTGRLIPTVIDVLQAVNYHYEDVRPEDVIYTG 77 (268)
T ss_pred EEEEE-cCCcCcHHHHHHHHHHHHH--hCCCeEEEEecCcccc-ccceecCCCCCcHHHHHHhccccccCCCHHHeeEeC
Confidence 46777 7999999999999999999 8999999999999874 4445532221 1 110 011122222 2
Q ss_pred ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC
Q psy11347 117 EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP 196 (294)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~ 196 (294)
.++++++|++..+......... .. ....+++.+...++|||||||+++.+..... ...+ ..+|.+|+|+.+
T Consensus 78 ~~~l~~i~~~~~~~~~~~~~~~-~~----~~~~~l~~~~~~~~yD~ViID~~~~~~~~~~--~~~l--~aAD~vlip~~~ 148 (268)
T TIGR01281 78 YGGVDCVEAGGPPAGSGCGGYV-VG----ETVKLLKEHHILDDYDVILFDVLGDVVCGGF--ATPL--QYADYALVVAAN 148 (268)
T ss_pred CCCeEEEecCCCCCCCccccee-hh----hhHHHhhhccccccCCEEEEecCCccccCcc--ccch--hhcCEEEEEecC
Confidence 3789999988654332211110 01 1112233322123499999999876642211 1122 479999999999
Q ss_pred chhhHHHHHHHHHHHHh----cCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhc
Q psy11347 197 QEVSLLDVRKEIDFCRK----VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHC 272 (294)
Q Consensus 197 ~~~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~ 272 (294)
+..++..+.++++.+.+ .+++..++|+||++.+ +..+++.+.++.++++.||++..+.++.
T Consensus 149 ~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~---------------~~~~~~~~~~~~~vl~~I~~~~~v~~A~ 213 (268)
T TIGR01281 149 DFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT---------------DLIERFNERVGMPVLGVVPDLEVIRRSR 213 (268)
T ss_pred chhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH---------------HHHHHHHHHcCCCEEEEcCCChHHHHHH
Confidence 99999999999887764 3566789999998631 3456677778999999999999999999
Q ss_pred cCCccccc--CCC----HHHHHHHHhhC
Q psy11347 273 DEGTSAID--TPS----ACVDAIQQIVQ 294 (294)
Q Consensus 273 ~~g~~v~~--~~s----~~~~~~~~la~ 294 (294)
..|+|+++ |++ .++++|++|++
T Consensus 214 ~~G~pV~~~~~~~~~~~~~a~~~~~la~ 241 (268)
T TIGR01281 214 VKGKTLFEMEESGPELAAVTQEYLRMAE 241 (268)
T ss_pred HCCCCHHHhCcccccchHHHHHHHHHHH
Confidence 99999998 544 46788888863
No 24
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.96 E-value=2.5e-28 Score=223.26 Aligned_cols=226 Identities=17% Similarity=0.146 Sum_probs=159.5
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccc-------cc------ccCCCC
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQV-------HQ------SASGWS 112 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~-------~~------~~~~~~ 112 (294)
.+++|+|.+.||||||||+|.|||..|+ ..|+||++||+|+|+ ++..+||..+... .. ....+.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA--~~G~rVLlIDlDpQ~-~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~ 196 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLA--LQGYRVLAVDLDPQA-SLSALLGVLPETDVGANETLYAAIRYDDTRRPLR 196 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHH--hcCCceEEEcCCCCC-CHHHHcCCCccccccccccHHHHHhccccCCCHH
Confidence 4689999999999999999999999999 899999999999984 7788888654310 00 011222
Q ss_pred cce---eccCeEEEecccccCCCCccee--e--c-Cc--cchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHh
Q psy11347 113 PVF---LEENLSVMSIGFLLNSPDDAVI--W--R-GP--KKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYL 182 (294)
Q Consensus 113 ~~~---~~~~l~~~~~~~~~~~~~~~~~--~--~-~~--~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l 182 (294)
++. ..+|++++|++..+...+.... . . .. .....+++.++.+. ++|||||||+||+++.. +.+++
T Consensus 197 ~~i~~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~--~~yD~IiIDtpP~l~~~---t~~al 271 (405)
T PRK13869 197 DVIRPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVA--DDYDVVVIDCPPQLGFL---TLSGL 271 (405)
T ss_pred HheeccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhh--ccCCEEEEECCCchhHH---HHHHH
Confidence 222 2378999998765533221110 0 0 00 01235788888886 45999999999999854 44444
Q ss_pred hcCCCcEEEEecCCchhhHHHHHHHHHHH-------Hhc--C--CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHH
Q psy11347 183 KGLPDIGAIVVTTPQEVSLLDVRKEIDFC-------RKV--N--IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMC 251 (294)
Q Consensus 183 ~~~~ad~vliv~~~~~~s~~~~~~~l~~l-------~~~--~--~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~ 251 (294)
..+|.+|+|+.++..++.++..+++.+ .+. + ...+++|+|+++. +...+ .+..+.+.
T Consensus 272 --~aAd~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~-------~~~~~---~~~~~~l~ 339 (405)
T PRK13869 272 --CAATSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEP-------QDAPQ---TKVAALLR 339 (405)
T ss_pred --HHcCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECC-------CCcHH---HHHHHHHH
Confidence 579999999999999999988887632 222 2 3467899999973 23323 33455566
Q ss_pred hhcCCcee-eccCCCchhhhhccCCccccc--CCCHHHHHHHH
Q psy11347 252 AELSVPFL-GSVPIDPLVTRHCDEGTSAID--TPSACVDAIQQ 291 (294)
Q Consensus 252 ~~~g~~~l-~~Ip~~~~~~~a~~~g~~v~~--~~s~~~~~~~~ 291 (294)
+.+|-.++ ..||.+..+.++...|+||++ |....++.|.+
T Consensus 340 ~~~~~~vl~~~I~~s~ai~~a~~~~~tv~e~~~~~~~~~~y~r 382 (405)
T PRK13869 340 NMFEDHVLTNPMVKSAAVSDAGLTKQTLYEIGRENLTRSTYDR 382 (405)
T ss_pred HHhhhhhccCcCcchHHHHhhHhcCCChhhcCCCcCCHHHHHH
Confidence 66676666 689999999999999999999 55444444444
No 25
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.96 E-value=3.4e-27 Score=191.83 Aligned_cols=169 Identities=61% Similarity=1.011 Sum_probs=133.6
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccc
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFL 128 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (294)
+|+|+|+|||+||||+|.|||..++ ..|+||++||+|++++++..+++
T Consensus 1 vi~v~s~kgG~GKTt~a~~LA~~la--~~g~~vllvD~D~q~~~~~~~~~------------------------------ 48 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALA--KLGYKVGLLDADIYGPSIPKMWR------------------------------ 48 (169)
T ss_pred CEEEecCCCcCChhHHHHHHHHHHH--HcCCcEEEEeCCCCCCCchHHHh------------------------------
Confidence 5899999999999999999999999 89999999999998865433200
Q ss_pred cCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHH
Q psy11347 129 LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEI 208 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l 208 (294)
.......++.+++.+...+ ||+||+|+||++++....... + ..+|.+++|+.++..++..+.+++
T Consensus 49 -----------~~~~~~~l~~~~~~~~~~~-yD~VIiD~pp~~~~~~~~~~~-~--~~ad~viiV~~p~~~s~~~~~~~~ 113 (169)
T cd02037 49 -----------GPMKMGAIKQFLTDVDWGE-LDYLVIDMPPGTGDEHLTLAQ-S--LPIDGAVIVTTPQEVALDDVRKAI 113 (169)
T ss_pred -----------CcchHHHHHHHHHHhhcCC-CCEEEEeCCCCCcHHHHHHHh-c--cCCCeEEEEECCchhhHHHHHHHH
Confidence 0001125566666654334 999999999998765432221 1 368999999999999999999999
Q ss_pred HHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCc
Q psy11347 209 DFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDP 266 (294)
Q Consensus 209 ~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~ 266 (294)
+.+++.+.+..++|+||+...++.|.++.+.+. ....+++.+.++.++++.||+++
T Consensus 114 ~~l~~~~~~~~gvv~N~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ip~~~ 169 (169)
T cd02037 114 DMFKKVNIPILGVVENMSYFVCPHCGKKIYIFG--KGGGEKLAEELGVPLLGKIPLDP 169 (169)
T ss_pred HHHHhcCCCeEEEEEcCCcccCCCCCCcccccC--CccHHHHHHHcCCCEEEeccCCC
Confidence 999999999999999999876666666655542 24578999999999999999975
No 26
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.95 E-value=1.7e-27 Score=207.52 Aligned_cols=217 Identities=16% Similarity=0.128 Sum_probs=150.2
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----ccc------ccCCCCccee--
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQ------SASGWSPVFL-- 116 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~------~~~~~~~~~~-- 116 (294)
+|+|. +||||||||+|.|||.+|+ ..|+||++||+|+++ ++...++..... +.. ......++..
T Consensus 2 ~i~v~-gKGGvGKTT~a~nLA~~la--~~G~rvlliD~Dpq~-~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 77 (267)
T cd02032 2 VLAVY-GKGGIGKSTTSSNLSVALA--KRGKKVLQIGCDPKH-DSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEG 77 (267)
T ss_pred EEEEe-cCCCCCHHHHHHHHHHHHH--HCCCcEEEEecCCCC-CcceeccCCCCCCHHHHHHhccccccCCChhheEEEC
Confidence 46777 6999999999999999999 899999999999986 445555432111 110 0111222222
Q ss_pred ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH-HHHHHHHhhcCCCcEEEEecC
Q psy11347 117 EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE-HLSLVQYLKGLPDIGAIVVTT 195 (294)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~-~~~~~~~l~~~~ad~vliv~~ 195 (294)
.++++++|++..+......... ......+++.+...+.|||||||+++..... ....+ ..||.+|+|+.
T Consensus 78 ~~~l~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~yD~vIIDt~g~~~~~~~~~al-----~~aD~vlip~~ 147 (267)
T cd02032 78 YGGVDCVEAGGPPAGAGCGGYV-----VGETVKLLKELNLFEEYDVILFDVLGDVVCGGFAAPL-----NYADYALIVTD 147 (267)
T ss_pred CCCcEEEEcCCCCCCccccchH-----HHHHHHHHHHccccccCCEEEEeCCCCcccccchhhh-----hhcCEEEEEec
Confidence 3789999987654332211100 0111223333322234999999998776432 22222 47999999999
Q ss_pred CchhhHHHHHHHHHHHHh----cCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhh
Q psy11347 196 PQEVSLLDVRKEIDFCRK----VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRH 271 (294)
Q Consensus 196 ~~~~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a 271 (294)
++..++..+.++++.++. .+++..++|+||++. ...++++.+.++.++++.||+++.+.++
T Consensus 148 p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~---------------~~~i~~~~~~~~~~vl~~Ip~~~~v~~A 212 (267)
T cd02032 148 NDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK---------------TDLIDKFVEAVGMPVLAVLPLIEDIRRS 212 (267)
T ss_pred CCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH---------------HHHHHHHHHhCCCCEEEEecCCccccHH
Confidence 999999999998887763 356678899999862 1245677778899999999999999999
Q ss_pred ccCCccccc--CCCHH----HHHHHHhhC
Q psy11347 272 CDEGTSAID--TPSAC----VDAIQQIVQ 294 (294)
Q Consensus 272 ~~~g~~v~~--~~s~~----~~~~~~la~ 294 (294)
...|+|+++ |.++. +++|++|++
T Consensus 213 ~~~G~~v~e~~~~~~~a~e~a~~y~~La~ 241 (267)
T cd02032 213 RVKGKTLFEMDESDEELAYRCDYYLLIAD 241 (267)
T ss_pred HHcCCCHHHhCcccccccHHHHHHHHHHH
Confidence 999999998 65654 567888763
No 27
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.95 E-value=1.8e-27 Score=194.93 Aligned_cols=177 Identities=31% Similarity=0.430 Sum_probs=140.3
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccc
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFL 128 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (294)
+|+|+++|||+||||+|.|||.+|+ .+|++|+++|+|++.+++..+++.+... . .
T Consensus 1 ~i~v~~~kgG~GKtt~a~~la~~l~--~~g~~vllvD~D~~~~~~~~~~~~~~~~---------~------~-------- 55 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALA--QLGYKVVLIDADLGLRNLDLILGLENRV---------V------Y-------- 55 (179)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHH--hCCCeEEEEeCCCCCCCchhhccccccC---------C------c--------
Confidence 4899999999999999999999999 8999999999999877776665543210 0 0
Q ss_pred cCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHH
Q psy11347 129 LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEI 208 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l 208 (294)
.+.+.+ . -|+||||+||+........+ ..+|.+|+|+.++..++..+.+++
T Consensus 56 -----------------~~~~~~---~----~d~viiD~p~~~~~~~~~~l-----~~ad~viiv~~~~~~s~~~~~~~~ 106 (179)
T cd02036 56 -----------------TLHDVL---A----GDYILIDSPAGIERGFITAI-----APADEALLVTTPEISSLRDADRVK 106 (179)
T ss_pred -----------------chhhcc---c----CCEEEEECCCCCcHHHHHHH-----HhCCcEEEEeCCCcchHHHHHHHH
Confidence 000010 0 18999999999876544433 579999999999999999999999
Q ss_pred HHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccCCccccc--CCCHHH
Q psy11347 209 DFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAID--TPSACV 286 (294)
Q Consensus 209 ~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~~v~~--~~s~~~ 286 (294)
+.++..+.+..++|+|+++.+ .... .+..+++.+.++.++++.||+++.+.++...|+++++ |.++++
T Consensus 107 ~~~~~~~~~~~~iv~N~~~~~-------~~~~---~~~~~~~~~~~~~~v~~~Ip~~~~~~~a~~~G~~v~~~~~~~~~~ 176 (179)
T cd02036 107 GLLEALGIKVVGVIVNRVRPD-------MVEG---GDMVEDIEEILGVPLLGVIPEDPAVIRATNRGEPVVLNKPKSPAA 176 (179)
T ss_pred HHHHHcCCceEEEEEeCCccc-------ccch---hhHHHHHHHHhCCCEEEEecCCHHHHHHHhcCCceEecCCCChhh
Confidence 999988888899999998732 2111 2234667777899999999999999999999999999 889887
Q ss_pred HHH
Q psy11347 287 DAI 289 (294)
Q Consensus 287 ~~~ 289 (294)
++|
T Consensus 177 ~~~ 179 (179)
T cd02036 177 QAY 179 (179)
T ss_pred hcC
Confidence 754
No 28
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.95 E-value=1e-26 Score=207.86 Aligned_cols=217 Identities=18% Similarity=0.227 Sum_probs=167.4
Q ss_pred ccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccc------cccCCCC-----
Q psy11347 44 SNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVH------QSASGWS----- 112 (294)
Q Consensus 44 ~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~------~~~~~~~----- 112 (294)
...+++|+|+|+|||+||||+|.|||.+|+ ..|++|+++|+|+++++++.+||.+..... .....++
T Consensus 90 ~~~~~vIav~~~KGGvGkTT~a~nLA~~la--~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~ 167 (322)
T TIGR03815 90 PARGVVVAVIGGRGGAGASTLAAALALAAA--RHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALR 167 (322)
T ss_pred CCCceEEEEEcCCCCCcHHHHHHHHHHHHH--hcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHH
Confidence 345899999999999999999999999999 899999999999999988888887653211 1011111
Q ss_pred -cceeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEE
Q psy11347 113 -PVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAI 191 (294)
Q Consensus 113 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vl 191 (294)
.+...+++.+++.+.... .......++.+++.+. +.|||||||+|++........+ ..+|.+|
T Consensus 168 ~~~~~~~~l~vl~~~~~~~---------~~~~~~~l~~~l~~l~--~~~D~VIID~p~~~~~~~~~~L-----~~AD~vl 231 (322)
T TIGR03815 168 DALPRRGGLSVLSWGRAVG---------AALPPAAVRAVLDAAR--RGGDLVVVDLPRRLTPAAETAL-----ESADLVL 231 (322)
T ss_pred HhCCCcCCeEEEecCCCCc---------CCCCHHHHHHHHHHHH--hcCCEEEEeCCCCCCHHHHHHH-----HHCCEEE
Confidence 112246888888765431 1123456788888886 4499999999999876544444 5799999
Q ss_pred EecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhh
Q psy11347 192 VVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRH 271 (294)
Q Consensus 192 iv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a 271 (294)
+|+.++..++..+.++++.+...+.+ +.+|+|+.. ...+ ..+++.+.+|.++++.||++..+.++
T Consensus 232 iV~~~~~~sl~~a~r~l~~l~~~~~~-~~lVv~~~~--------~~~~------~~~~i~~~lg~~v~~~Ip~d~~v~~a 296 (322)
T TIGR03815 232 VVVPADVRAVAAAARVCPELGRRNPD-LRLVVRGPA--------PAGL------DPEEIAESLGLPLLGEVRDQRGLARA 296 (322)
T ss_pred EEcCCcHHHHHHHHHHHHHHhhhCCC-eEEEEeCCC--------CCCC------CHHHHHHHhCCCceeeCCCChhHHHH
Confidence 99999999999999999999876644 567777643 1112 24677778899999999999999999
Q ss_pred ccCCccccc-CCCHHHHHHHHhh
Q psy11347 272 CDEGTSAID-TPSACVDAIQQIV 293 (294)
Q Consensus 272 ~~~g~~v~~-~~s~~~~~~~~la 293 (294)
.+.|+++.. +++++++.+.++.
T Consensus 297 ~~~G~~~~~~~~~~~~~~~~~~l 319 (322)
T TIGR03815 297 LERGGLPAASRRRPLGRAAAEVL 319 (322)
T ss_pred HhCCCCcCCCCCCHHHHHHHHHH
Confidence 999998877 9999999888763
No 29
>PHA02518 ParA-like protein; Provisional
Probab=99.95 E-value=6.1e-27 Score=196.95 Aligned_cols=195 Identities=21% Similarity=0.305 Sum_probs=142.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF 127 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (294)
++|+|.+.||||||||+|.|||.+|+ ..|++|++||+|++++. ...++.... .. .+++...
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la--~~g~~vlliD~D~q~~~-~~~~~~~~~---------------~~-~~i~~~~ 61 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLH--ADGHKVLLVDLDPQGSS-TDWAEAREE---------------GE-PLIPVVR 61 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHH--hCCCeEEEEeCCCCCCh-HHHHHhccc---------------CC-CCCchhh
Confidence 57999999999999999999999999 89999999999998743 333322110 00 1111100
Q ss_pred ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHH
Q psy11347 128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKE 207 (294)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~ 207 (294)
....+...+..+. +.|||||||+||+.+......+ ..+|.||+|+.++..++..+.++
T Consensus 62 ---------------~~~~~~~~l~~~~--~~~d~viiD~p~~~~~~~~~~l-----~~aD~viip~~ps~~~~~~~~~~ 119 (211)
T PHA02518 62 ---------------MGKSIRADLPKVA--SGYDYVVVDGAPQDSELARAAL-----RIADMVLIPVQPSPFDIWAAPDL 119 (211)
T ss_pred ---------------ccHHHHHHHHHHh--ccCCEEEEeCCCCccHHHHHHH-----HHCCEEEEEeCCChhhHHHHHHH
Confidence 0113455566654 3499999999999875544444 57999999999999999999888
Q ss_pred HHHHHhc-----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceee-ccCCCchhhhhccCCccccc-
Q psy11347 208 IDFCRKV-----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLG-SVPIDPLVTRHCDEGTSAID- 280 (294)
Q Consensus 208 l~~l~~~-----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~-~Ip~~~~~~~a~~~g~~v~~- 280 (294)
++.++.. +.+..++|.|++.. +.... ..+.++++..+.+++. .|+++..+.++.+.|+++++
T Consensus 120 ~~~~~~~~~~~~~~~~~~iv~n~~~~-------~~~~~----~~~~~~l~~~~~~~~~~~i~~~~~~~~a~~~g~~v~~~ 188 (211)
T PHA02518 120 VELIKARQEVTDGLPKFAFIISRAIK-------NTQLY----REARKALAGYGLPILRNGTTQRVAYADAAEAGGSVLEL 188 (211)
T ss_pred HHHHHHHHhhCCCCceEEEEEeccCC-------cchHH----HHHHHHHHHcCchhhhchhhhHHHHHHHHhcCCceEec
Confidence 8877643 45567888898752 22221 2345555566888774 56777999999999999998
Q ss_pred -CCCHHHHHHHHhhC
Q psy11347 281 -TPSACVDAIQQIVQ 294 (294)
Q Consensus 281 -~~s~~~~~~~~la~ 294 (294)
+.+++.++|++|++
T Consensus 189 ~~~~~a~~~~~~l~~ 203 (211)
T PHA02518 189 PEDDKAAEEIIQLVK 203 (211)
T ss_pred CCCchHHHHHHHHHH
Confidence 89999999999874
No 30
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.95 E-value=2.3e-27 Score=205.83 Aligned_cols=227 Identities=19% Similarity=0.280 Sum_probs=160.7
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCC-CcEEEEecCCCCCChhhhcccccc---c---ccccc-CC---CCcc
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNES-VDVGVLDLDICGPSMPRMMGLLNE---Q---VHQSA-SG---WSPV 114 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g-~~VlliD~D~~~~~l~~~lg~~~~---~---~~~~~-~~---~~~~ 114 (294)
||++|+|.+.||||||||+|.|||.+|+ ..+ +||++||+||| +++...+|.+.. . +.... .. ....
T Consensus 1 ~~~iI~v~n~KGGvGKTT~a~nLa~~La--~~~~~kVLliDlDpQ-~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (259)
T COG1192 1 MMKIIAVANQKGGVGKTTTAVNLAAALA--KRGGKKVLLIDLDPQ-GSLTSWLGLRPDLEGDLYNLLSGLKERPDILDYT 77 (259)
T ss_pred CCEEEEEEecCCCccHHHHHHHHHHHHH--HhcCCcEEEEeCCCc-chhhHhcCCCcccchhHHHHHhcccccccchhcc
Confidence 5899999999999999999999999999 444 89999999998 577888887655 1 11111 11 1111
Q ss_pred eeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEec
Q psy11347 115 FLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVT 194 (294)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~ 194 (294)
...++++++|+...... ..............++.+++.+. ++|||||||+||+.+.. +.+++ ..+|++++|+
T Consensus 78 ~~~~~ld~ips~~~l~~-~~~~~~~~~~~~~~l~~~~~~~~--~~yD~iiID~pp~l~~l---~~nal--~asd~vlIP~ 149 (259)
T COG1192 78 VVIEGLDLIPSNIDLAE-GAEIELNAVAKELLLKRLLDPVK--DDYDYIIIDTPPSLGVL---TLNAL--AAADHVLIPV 149 (259)
T ss_pred cCCCCceEecCChHHHh-HHHHHHhhhhHHHHHHHHhhhhc--cCCCEEEECCCCchhHH---HHHHH--HHcCeeEEec
Confidence 13478999998766542 10111111223335566666444 45999999999999643 33444 5789999999
Q ss_pred CCchhhHHHHHHHHHHHHhcC------CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee-eccCCCch
Q psy11347 195 TPQEVSLLDVRKEIDFCRKVN------IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL-GSVPIDPL 267 (294)
Q Consensus 195 ~~~~~s~~~~~~~l~~l~~~~------~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l-~~Ip~~~~ 267 (294)
.++..++..+..++..+.... ....++++|+++.+ ... ..+..+...+.++.+++ ..||.+..
T Consensus 150 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~ 219 (259)
T COG1192 150 QPEFLDLEGLEQLLNTLEDLLKLRRNKLIVVGILITRFDSR-------TKL---ADEVLQELKQLLGDPVLKTKIPRRVA 219 (259)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeeceEcCC-------cch---HHHHHHHHHHHhccccccccCccccc
Confidence 999999999998877775432 25678999998742 221 23344555555555554 68999999
Q ss_pred hhhhccCCccccc--CCCHHHHHHHHhh
Q psy11347 268 VTRHCDEGTSAID--TPSACVDAIQQIV 293 (294)
Q Consensus 268 ~~~a~~~g~~v~~--~~s~~~~~~~~la 293 (294)
+.++...|.++.. ++++.++++.+++
T Consensus 220 ~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 247 (259)
T COG1192 220 YREAAAEGKPLYEYDPKSKAAEEYYELA 247 (259)
T ss_pred HHhHHHcCCCceecCCcchHHHHHHHHH
Confidence 9999999999988 7788998888876
No 31
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.94 E-value=7.1e-26 Score=185.63 Aligned_cols=215 Identities=23% Similarity=0.335 Sum_probs=160.4
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc--cc------cc----ccCCCCc-----
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE--QV------HQ----SASGWSP----- 113 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~--~~------~~----~~~~~~~----- 113 (294)
..++||||+||||+|+.|+..|. .+.|++|++||+|+ ..+++..||.+.+ ++ .+ ....+..
T Consensus 3 IaI~GKGG~GKTtiaalll~~l~-~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk 80 (255)
T COG3640 3 IAITGKGGVGKTTIAALLLKRLL-SKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFK 80 (255)
T ss_pred EEEecCCCccHHHHHHHHHHHHH-hcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCcccccc
Confidence 34569999999999999777766 14559999999999 6799999999874 10 00 0001000
Q ss_pred -------c-----eeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHH
Q psy11347 114 -------V-----FLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQY 181 (294)
Q Consensus 114 -------~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~ 181 (294)
+ ...++++++-.|....... -+.......++++++.+...+ ||+||+|+-+++.-.-..+.
T Consensus 81 ~~~~~~di~~e~~~e~~~~~LLvmGkie~~Ge----GC~Cp~~allR~~l~~l~~~~-~e~VivDtEAGiEHfgRg~~-- 153 (255)
T COG3640 81 ENPLVSDLPDEYLVENGDIDLLVMGKIEEGGE----GCACPMNALLRRLLRHLILNR-YEVVIVDTEAGIEHFGRGTI-- 153 (255)
T ss_pred cCcchhhhhHHHhhhcCCccEEEeccccCCCC----cccchHHHHHHHHHHHHhccc-CcEEEEecccchhhhccccc--
Confidence 0 0114566666553321111 112234458899999998655 99999999998854333344
Q ss_pred hhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeec
Q psy11347 182 LKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGS 261 (294)
Q Consensus 182 l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~ 261 (294)
..+|.+|+|++|+..++..+.++-++.++.+++.+++|+||++. . ...........+.+++++
T Consensus 154 ---~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e-------~-------e~~~~~~~~~~~~~vlg~ 216 (255)
T COG3640 154 ---EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE-------E-------EELLRELAEELGLEVLGV 216 (255)
T ss_pred ---cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc-------h-------hHHHHhhhhccCCeEEEE
Confidence 68999999999999999999999999999999999999999872 1 234567777889999999
Q ss_pred cCCCchhhhhccCCccccc-CCCHHHHHHHHhh
Q psy11347 262 VPIDPLVTRHCDEGTSAID-TPSACVDAIQQIV 293 (294)
Q Consensus 262 Ip~~~~~~~a~~~g~~v~~-~~s~~~~~~~~la 293 (294)
||+|+.+.++-..|.|+.. | .+.+++++++
T Consensus 217 iP~d~~v~~~dl~G~pl~~~~--~v~~~i~~I~ 247 (255)
T COG3640 217 IPYDPEVVEADLKGEPLNEEP--EVLKEIEEIA 247 (255)
T ss_pred ccCCHHHHhccccCCccccch--hhhHHHHHHH
Confidence 9999999999999999999 7 6777777665
No 32
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.94 E-value=8.2e-26 Score=195.36 Aligned_cols=202 Identities=43% Similarity=0.732 Sum_probs=163.4
Q ss_pred cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----cccccCCCCcceec---
Q psy11347 45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQSASGWSPVFLE--- 117 (294)
Q Consensus 45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~~~~~~~~~~~~--- 117 (294)
...++|++.|+|||+||||+|.|||..++ ..|+||+++|+|..+++++.+||.+... ...+.. +.++...
T Consensus 55 ~~~~~I~V~S~kgGvGKStva~nLA~alA--~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~-~~~~~~~~~~ 131 (265)
T COG0489 55 GVKNVIAVTSGKGGVGKSTVAVNLAAALA--QLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEA-LEPVIQHDGI 131 (265)
T ss_pred ccceEEEEEeCCCCCcHHHHHHHHHHHHH--hcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCc-cccceecCcc
Confidence 35789999999999999999999999999 9999999999999999999999997532 222222 6665443
Q ss_pred cCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc
Q psy11347 118 ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ 197 (294)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~ 197 (294)
.++++++.+..... +........+.+++..+.|.+ |||||||+||+..+.....+. ...|.+|+|+++.
T Consensus 132 ~~lsi~~~~~~p~~------~r~~l~s~~~~qll~~~~~~~-~D~vIID~PP~~g~~d~~i~~----~~~~g~viVt~p~ 200 (265)
T COG0489 132 KVLSILPLGPVPVI------PRGLLGSKAMLQLLEDVLWGE-YDYVIIDTPPGTGDADATVLQ----RIPDGVVIVTTPG 200 (265)
T ss_pred ceEEEEecCCCCCC------ChHhhhhHHHHHHHHHHhccC-CCEEEEeCCCCchHHHHHHHh----ccCCeEEEEeCCc
Confidence 56777777652222 234455678999999999776 999999999999876665555 4678999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhh
Q psy11347 198 EVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTR 270 (294)
Q Consensus 198 ~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~ 270 (294)
......+.+.++.+++.+.+++|+|.||..+.|+.|. ....+.+.++++ ++++.+|.++...+
T Consensus 201 ~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~~~~~~---------~g~~~~~~~~~~-~~~g~~p~~~~~~~ 263 (265)
T COG0489 201 KTALEDVKKAIDMLEKAGIPVLGVVENMSYFICPRCG---------EGGGEKYAERYG-PYLGSIPLDPSARE 263 (265)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEEecCccCcccccC---------CCchhhHHHHhc-cccccCCCChhhhh
Confidence 9999999999999999999999999999998877775 123456666667 88899998876654
No 33
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.94 E-value=9.9e-27 Score=212.65 Aligned_cols=225 Identities=16% Similarity=0.149 Sum_probs=154.3
Q ss_pred cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----------ccc---ccCCC
Q psy11347 45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----------VHQ---SASGW 111 (294)
Q Consensus 45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----------~~~---~~~~~ 111 (294)
..+++|+|.|.||||||||+|.|||.+|+ ..|+||++||+|+++ +++.+||..+.. ... ....+
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La--~~G~rVLlID~DpQ~-~ls~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 178 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLA--LRGYRVLAIDLDPQA-SLSALFGYQPEFDVGENETLYGAIRYDDERRPL 178 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHH--hcCCCEEEEecCCCC-CHHHHcCCCcccccccCccHHHHHhccccccCH
Confidence 34689999999999999999999999999 899999999999974 788888875431 000 01122
Q ss_pred Ccce---eccCeEEEecccccCCCCccee--e-c----CccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHH
Q psy11347 112 SPVF---LEENLSVMSIGFLLNSPDDAVI--W-R----GPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQY 181 (294)
Q Consensus 112 ~~~~---~~~~l~~~~~~~~~~~~~~~~~--~-~----~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~ 181 (294)
.++. ..++++++|++..+...+.... . . .......+.+.++.+. +.||+||||+||+++.... ++
T Consensus 179 ~~~i~~~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~--~~yD~IiiD~pp~~~~~~~---~a 253 (387)
T TIGR03453 179 SEIIRKTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAEVE--DDYDVVVIDCPPQLGFLTL---SA 253 (387)
T ss_pred HhhcccCCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH--hcCCEEEEeCCccHhHHHH---HH
Confidence 2222 2378999998754322111100 0 0 0011235778888876 4499999999999975433 33
Q ss_pred hhcCCCcEEEEecCCchhhHHHHHHHHHHH-------Hhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHH
Q psy11347 182 LKGLPDIGAIVVTTPQEVSLLDVRKEIDFC-------RKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKM 250 (294)
Q Consensus 182 l~~~~ad~vliv~~~~~~s~~~~~~~l~~l-------~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~ 250 (294)
+ ..+|.+|+|+.++..++..+..+++.+ +.. +....++|+|+++. +.... .+..+.+
T Consensus 254 l--~aad~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~-------~~~~~---~~~~~~l 321 (387)
T TIGR03453 254 L--CAATGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEP-------NDGPQ---AQMVAFL 321 (387)
T ss_pred H--HHcCeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECC-------CCccH---HHHHHHH
Confidence 4 579999999999988888776555433 332 24467899999873 22222 3344555
Q ss_pred HhhcCCcee-eccCCCchhhhhccCCccccc--CCCHHHHHH
Q psy11347 251 CAELSVPFL-GSVPIDPLVTRHCDEGTSAID--TPSACVDAI 289 (294)
Q Consensus 251 ~~~~g~~~l-~~Ip~~~~~~~a~~~g~~v~~--~~s~~~~~~ 289 (294)
.+.+|..++ ..||.+..+.++...|.||++ |.+..++.+
T Consensus 322 ~~~~~~~vl~~~I~~~~~~~~a~~~g~~V~e~~~~~~~~~~~ 363 (387)
T TIGR03453 322 RSLFGDHVLTNPMLKSTAISDAGLTKQTLYEVERSQFTRSTY 363 (387)
T ss_pred HHHhccccccccccccHHHHhhhhcCCCcEEECCCCCCHHHH
Confidence 556677777 589999999999999999999 554333333
No 34
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.94 E-value=1.1e-25 Score=188.35 Aligned_cols=221 Identities=23% Similarity=0.383 Sum_probs=158.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccccccc------------------
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA------------------ 108 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~------------------ 108 (294)
|+.|+|+|||||+||||+|++||..|+ ..++++++|+|...|+++.+|+.+........
T Consensus 1 mm~vAV~sGKGGtGKTTva~~la~~l~---~~~~~~l~DcDVe~PNl~l~l~~e~~~~~e~~~~~~p~i~~e~C~~CG~C 77 (284)
T COG1149 1 MMQVAVASGKGGTGKTTVAANLAVLLG---DKYKLVLADCDVEAPNLHLLLGVEVLEEEEVIRGEIPEIDPEKCIRCGKC 77 (284)
T ss_pred CcEEEEeecCCCCChhhHHHHHHHHhc---cccceEEEecCCCCCCcceEeccchhhhhHHHHhhccccChhhccccCcH
Confidence 467999999999999999999999999 57899999999999999999988765211100
Q ss_pred ---CCCCccee-c-----------------------cCeEEEe--cccccCCCCc---ce----eecCccc-hHHHHHHH
Q psy11347 109 ---SGWSPVFL-E-----------------------ENLSVMS--IGFLLNSPDD---AV----IWRGPKK-NTMIRQFL 151 (294)
Q Consensus 109 ---~~~~~~~~-~-----------------------~~l~~~~--~~~~~~~~~~---~~----~~~~~~~-~~~l~~~l 151 (294)
..+..+.. . +.+...+ .|.......+ .+ ...+... ...+..+-
T Consensus 78 ~~vC~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~~G~i~~~k~~~g~~li~g~l~vGe~~s~~lV~~~k 157 (284)
T COG1149 78 AEVCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALK 157 (284)
T ss_pred HHhCCCCeEEEcCCCceecCcccccCcccceeeCCCcccccccceeeEEEEEEcCCCceeEEeeccCCccccchHHHHHH
Confidence 01111100 0 0000000 0000000000 00 0011112 22333333
Q ss_pred HhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCC
Q psy11347 152 SEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCP 231 (294)
Q Consensus 152 ~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~ 231 (294)
+..+ +. -|++|||+|||.+++.++.+ ..+|.+|+||.|++.+++++.+.++..+..+++ .++|+||+...
T Consensus 158 k~a~-E~-~~~~IIDsaaG~gCpVi~sl-----~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iViNr~~~g-- 227 (284)
T COG1149 158 KHAK-EL-ADLLIIDSAAGTGCPVIASL-----KGADLAILVTEPTPFGLHDLKRALELVEHFGIP-TGIVINRYNLG-- 227 (284)
T ss_pred Hhhh-hh-cceeEEecCCCCCChHHHhh-----ccCCEEEEEecCCccchhHHHHHHHHHHHhCCc-eEEEEecCCCC--
Confidence 3333 22 59999999999999988877 799999999999999999999999999999999 68999997421
Q ss_pred CCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccCCcccccCCCHHHHHHHHh
Q psy11347 232 KCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAIDTPSACVDAIQQI 292 (294)
Q Consensus 232 ~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~~v~~~~s~~~~~~~~l 292 (294)
...++++.++.|+++++.||++..+.++..+|.|+.++.++.+..+...
T Consensus 228 ------------~s~ie~~~~e~gi~il~~IPyd~~i~~~~~~g~~~~~~~~k~~~~~~~~ 276 (284)
T COG1149 228 ------------DSEIEEYCEEEGIPILGEIPYDKDIPEAYVNGEPFVEPDSKEAEAILEE 276 (284)
T ss_pred ------------chHHHHHHHHcCCCeeEECCcchhHHHHHhCCCccccccchHHHHHHHH
Confidence 1158899999999999999999999999999999999777777766554
No 35
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.94 E-value=7.3e-26 Score=190.62 Aligned_cols=197 Identities=16% Similarity=0.118 Sum_probs=133.2
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc-c---cc-----ccCCCCcce--e
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ-V---HQ-----SASGWSPVF--L 116 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~-~---~~-----~~~~~~~~~--~ 116 (294)
++|+|. +||||||||++.|||.+|+ +.|+||++||+|++.+....+++.+... + .. ....+.++. .
T Consensus 1 ~~iav~-gKGGvGKTt~~~nLA~~la--~~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (212)
T cd02117 1 RQIAIY-GKGGIGKSTTSQNLSAALA--EMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEG 77 (212)
T ss_pred CEEEEE-CCCcCcHHHHHHHHHHHHH--HCCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeEeC
Confidence 367888 5999999999999999999 8999999999999987666555543321 1 11 111122222 2
Q ss_pred ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC
Q psy11347 117 EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP 196 (294)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~ 196 (294)
.+|++++|++........... ........++ .+..+. ++|||||||+++...... ....+....+|.+++|+++
T Consensus 78 ~~~l~vlp~~~~~~~~~~~~~-~~~~~~~~l~-~l~~~~--~~yD~ilID~~g~~~~~~--~~~~l~~~~ad~vliv~~p 151 (212)
T cd02117 78 FGGVKCVESGGPEPGVGCAGR-GVITAVNLLE-KEGFAE--DDLDVVLYDVLGDVVCGG--FAMPIREGKADEIYIVTSG 151 (212)
T ss_pred CCCcEEEeCCCCCCCcccCCc-chhhHHHHHH-hccccc--cCCCEEEEecCCCceecc--cccccccccCcEEEEEecc
Confidence 379999999876654432110 0000111232 444444 449999999976553111 1111101379999999999
Q ss_pred chhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCC
Q psy11347 197 QEVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPID 265 (294)
Q Consensus 197 ~~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~ 265 (294)
+..+++++.++++.++.. +.+..++|+||++. + ...+..+++.+.++.++++.||++
T Consensus 152 ~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~-------~-----~~~~~~~~~~~~~~~~vl~~IP~d 212 (212)
T cd02117 152 EFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT-------D-----RETELIDAFAERLGTQVIHFVPRD 212 (212)
T ss_pred cHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC-------c-----cHHHHHHHHHHHcCCCEEEecCCC
Confidence 999999999888888754 55678999999862 1 123467888888999999999986
No 36
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.94 E-value=3.2e-25 Score=195.98 Aligned_cols=221 Identities=19% Similarity=0.271 Sum_probs=153.1
Q ss_pred cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc-ccccc--CCC-------Cc-
Q psy11347 45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ-VHQSA--SGW-------SP- 113 (294)
Q Consensus 45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~-~~~~~--~~~-------~~- 113 (294)
+..++|+|+ +|||+||||++.|||.+|+ ..|+||+++|+|++++++..+||..... +.... ..+ .+
T Consensus 29 ~~~~ii~v~-gkgG~GKSt~a~nLa~~la--~~g~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~dv 105 (329)
T cd02033 29 KKTQIIAIY-GKGGIGKSFTLANLSYMMA--QQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDV 105 (329)
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHH--HCCCcEEEEEeeecccccchhccccCCCcccccccccccCcccceeece
Confidence 446788887 6999999999999999999 8999999999999999999999865432 11110 000 11
Q ss_pred ceeccCeEEEecccccCCCCcceeecCccch--HHHHHHHHhh---ccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCc
Q psy11347 114 VFLEENLSVMSIGFLLNSPDDAVIWRGPKKN--TMIRQFLSEV---DWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDI 188 (294)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~l~~l---~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad 188 (294)
.....++.++..+ ....+.+.... ....++++.+ .| + |||||+|++++..+..+...... ..+|
T Consensus 106 ~~~~~gv~~~~~g-------~p~~~~G~~~~~~i~~~~~l~~l~~~~w-~-~DyVliD~~gdv~~ggf~l~i~~--~~ad 174 (329)
T cd02033 106 CFKRDGVFAMELG-------GPEVGRGCGGRGIIHGFELLEKLGFHDW-D-FDYVLLDFLGDVVCGGFGLPIAR--DMAQ 174 (329)
T ss_pred EEEeCCEEEecCC-------CCeecccccchHHHHHHHHHHHccCccc-c-CCEEEEecCCcceeccccchhhh--cCCc
Confidence 1112344444322 11112222211 1222456654 44 3 99999999876642111111111 3588
Q ss_pred EEEEecCCchhhHHHH---HHHHHHHHhcC--CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccC
Q psy11347 189 GAIVVTTPQEVSLLDV---RKEIDFCRKVN--IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVP 263 (294)
Q Consensus 189 ~vliv~~~~~~s~~~~---~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip 263 (294)
.+++|++++..++..+ .+.+..+++.+ .+.+++|+||++. ...++++.+.+++++++.||
T Consensus 175 ~VIVVt~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~---------------~~~ie~~ae~lgi~vLg~IP 239 (329)
T cd02033 175 KVIVVGSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDG---------------TGEAQAFAAHAGIPILAAIP 239 (329)
T ss_pred eEEEeCCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCC---------------cchHHHHHHHhCCCEEEECC
Confidence 9999999999999765 45556666664 5689999999752 12478888999999999999
Q ss_pred CCchhhhhccCCcccccCCCHHHHHHHHhhC
Q psy11347 264 IDPLVTRHCDEGTSAIDTPSACVDAIQQIVQ 294 (294)
Q Consensus 264 ~~~~~~~a~~~g~~v~~~~s~~~~~~~~la~ 294 (294)
+++.+.++..+|+++..|.+++++.|++||+
T Consensus 240 ~D~~V~~a~~~g~~~~~p~s~~a~~f~~LA~ 270 (329)
T cd02033 240 ADEELRRKSAAYQIVGRPGTTWGPLFEQLAT 270 (329)
T ss_pred CCHHHHHHHHcCCeecCCCCHHHHHHHHHHH
Confidence 9999999999999654499999999999874
No 37
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.94 E-value=1.6e-26 Score=210.07 Aligned_cols=217 Identities=15% Similarity=0.120 Sum_probs=151.1
Q ss_pred cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec-CCCCCChhhhccccccc-------cc----cccCCCC
Q psy11347 45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL-DICGPSMPRMMGLLNEQ-------VH----QSASGWS 112 (294)
Q Consensus 45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~-D~~~~~l~~~lg~~~~~-------~~----~~~~~~~ 112 (294)
.++++|+|.+.||||||||+|.|||..|+ ..|+||++||+ |+|+ ++..+||..+.. +. .......
T Consensus 104 ~~~~vIai~n~KGGVGKTT~a~nLA~~LA--~~G~rVLlID~~DpQ~-nlt~~~g~~~~~~~~~~~~l~~~~~~~~~~~~ 180 (388)
T PRK13705 104 VFPPVIGVAAHKGGVYKTSVSVHLAQDLA--LKGLRVLLVEGNDPQG-TASMYHGWVPDLHIHAEDTLLPFYLGEKDDAT 180 (388)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHH--hcCCCeEEEcCCCCCC-chhhhcCcCccccccccccHHHHHhcCCCchh
Confidence 45799999999999999999999999999 89999999996 9986 556677764321 00 0001111
Q ss_pred cce---eccCeEEEecccccCCCCcceeec------CccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhh
Q psy11347 113 PVF---LEENLSVMSIGFLLNSPDDAVIWR------GPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLK 183 (294)
Q Consensus 113 ~~~---~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~ 183 (294)
... ..+|++++|++..+...+..+... .......+++.++.+. ++|||||||+||+++... .+++
T Consensus 181 ~~i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~--~~YD~IiIDtpP~l~~~t---~nal- 254 (388)
T PRK13705 181 YAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVA--HDYDVIVIDSAPNLGIGT---INVV- 254 (388)
T ss_pred hheecCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhh--ccCCEEEEECCCchhHHH---HHHH-
Confidence 111 237999999875543222111000 0112346778888876 449999999999998543 3444
Q ss_pred cCCCcEEEEecCCchhhHHHHHHHHHHHHhc-------C-CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcC
Q psy11347 184 GLPDIGAIVVTTPQEVSLLDVRKEIDFCRKV-------N-IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELS 255 (294)
Q Consensus 184 ~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~-------~-~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g 255 (294)
..||.||+|+.++..++.++..+++.+... + .+.+.+++|+++.+ .... .....+.+.+.+|
T Consensus 255 -~AaD~viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~-------~~~~--~~~~~~~l~~~~~ 324 (388)
T PRK13705 255 -CAADVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNS-------NGSQ--SPWMEEQIRDAWG 324 (388)
T ss_pred -HHcCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCC-------CchH--HHHHHHHHHHHhc
Confidence 579999999999999999988887777532 1 13356899998731 1111 1113355666677
Q ss_pred Ccee-eccCCCchhhhhccCCccccc
Q psy11347 256 VPFL-GSVPIDPLVTRHCDEGTSAID 280 (294)
Q Consensus 256 ~~~l-~~Ip~~~~~~~a~~~g~~v~~ 280 (294)
-.++ ..||.+..+.++...++++++
T Consensus 325 ~~vl~~~I~~s~~i~~a~~~~~ti~e 350 (388)
T PRK13705 325 SMVLKNVVRETDEVGKGQIRMRTVFE 350 (388)
T ss_pred cccccccCcccchHhhhhhcCCCcee
Confidence 6677 589999999999999999999
No 38
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.94 E-value=5.1e-26 Score=206.48 Aligned_cols=216 Identities=14% Similarity=0.119 Sum_probs=150.8
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec-CCCCCChhhhcccccccc----------ccc-cCCCCc
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL-DICGPSMPRMMGLLNEQV----------HQS-ASGWSP 113 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~-D~~~~~l~~~lg~~~~~~----------~~~-~~~~~~ 113 (294)
.+++|+|.+.||||||||+|.|||.+|+ ..|+||++||+ |+|+ ++..+||..+... ... ...+..
T Consensus 105 ~~~vIav~n~KGGVGKTTta~nLA~~LA--~~G~rVLlIDl~DpQ~-nlt~~~g~~~~~~~~~~~tl~~~~~~~~~~~~~ 181 (387)
T PHA02519 105 NPVVLAVMSHKGGVYKTSSAVHTAQWLA--LQGHRVLLIEGNDPQG-TASMYHGYVPDLHIHADDTLLPFYLGERDNAEY 181 (387)
T ss_pred CceEEEEecCCCCCcHHHHHHHHHHHHH--hCCCcEEEEeCCCCCC-CcccccCcCccccccccccHHHHHhCCCcchHh
Confidence 4689999999999999999999999999 89999999996 9986 5666777654210 000 001111
Q ss_pred ce---eccCeEEEecccccCCCCcceeec---C---ccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhc
Q psy11347 114 VF---LEENLSVMSIGFLLNSPDDAVIWR---G---PKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKG 184 (294)
Q Consensus 114 ~~---~~~~l~~~~~~~~~~~~~~~~~~~---~---~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~ 184 (294)
.. ..++++++|++..+...+..+... . ......+++.++.+. ++|||||||+||.++.. +.+++
T Consensus 182 ~i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~--~~YD~IlID~pPslg~l---t~nAL-- 254 (387)
T PHA02519 182 AIKPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVW--DNYDIIVIDSAPNLGTG---TINVV-- 254 (387)
T ss_pred heecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhh--ccCCEEEEECCCCccHH---HHHHH--
Confidence 11 237999999875543222111000 0 112346778888876 45999999999999853 44444
Q ss_pred CCCcEEEEecCCchhhHHHHHHHHHHHHh-------cC-CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCC
Q psy11347 185 LPDIGAIVVTTPQEVSLLDVRKEIDFCRK-------VN-IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSV 256 (294)
Q Consensus 185 ~~ad~vliv~~~~~~s~~~~~~~l~~l~~-------~~-~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~ 256 (294)
..||.||+|+.++..++.++..+++.+.. .+ .+.+.+++|+++.+ ..... ....+.+.+.+|-
T Consensus 255 ~AAd~vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~------~~~~~---~~i~~~l~~~~g~ 325 (387)
T PHA02519 255 CAADVIVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLT------VGNQS---RWMEEQIRNTWGS 325 (387)
T ss_pred HHhCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCC------CchHH---HHHHHHHHHHhcc
Confidence 57899999999999999988777666632 12 22456899998732 01111 2234566677787
Q ss_pred cee-eccCCCchhhhhccCCccccc
Q psy11347 257 PFL-GSVPIDPLVTRHCDEGTSAID 280 (294)
Q Consensus 257 ~~l-~~Ip~~~~~~~a~~~g~~v~~ 280 (294)
.++ ..||....+.+|...++++++
T Consensus 326 ~vl~~~I~~s~~i~~a~~~~~ti~e 350 (387)
T PHA02519 326 MVLRQVVRVTDEVGKGQIKMRTVFE 350 (387)
T ss_pred ccccccCcCcchHhhchhcCCChhh
Confidence 777 689999999999999999999
No 39
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.93 E-value=7.9e-25 Score=192.58 Aligned_cols=221 Identities=19% Similarity=0.195 Sum_probs=137.7
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc-ccccccC---------CCCcceec
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE-QVHQSAS---------GWSPVFLE 117 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~-~~~~~~~---------~~~~~~~~ 117 (294)
++|+|+ +|||+||||+|.|||.+|+ ..|+||++||+|++.+++..++|.... .+..... .+.++...
T Consensus 1 ~vIav~-gKGGvGKTT~a~nLA~~La--~~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~~ 77 (296)
T TIGR02016 1 RIIAIY-GKGGSGKSFTTTNLSHMMA--EMGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCFK 77 (296)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHH--HCCCeEEEEEecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHheee
Confidence 478888 8999999999999999999 899999999999999888877763321 1111110 11111111
Q ss_pred cCeEEEecccccCCCCcceeecCc--------cchHHHHHHHHhhcc-CCCccEEEEcCCCCCChHHHHHHHHhhcCCCc
Q psy11347 118 ENLSVMSIGFLLNSPDDAVIWRGP--------KKNTMIRQFLSEVDW-GNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDI 188 (294)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~l~~-~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad 188 (294)
.. ++.+... .. ......+ .........++.+.. .++|||||||+++...+.-......+ ..+|
T Consensus 78 ~~---~~~~~~~--~~-~~e~~~~~~~~gc~~~~~~~~~~~l~~l~~~~~~yD~IliD~~~~~~~~g~~~~~a~--~~Ad 149 (296)
T TIGR02016 78 TT---IMNGSGG--VY-GMELGGPEVGRGCGGRGIIHGFDLLEKLGFHDWDFDFVLMDFLGDVVCGGFATPLAR--SLAE 149 (296)
T ss_pred cc---ccCcCCC--cc-eeecCCCCcccccCcchhhHHHHHHHHhhhhcccCCEEEEecCCCccccccccchhh--hhCC
Confidence 00 1101000 00 0001110 011122355555431 12499999999764411000011111 3689
Q ss_pred EEEEecCCchhhHHHHHHHHHHH---HhcC--CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccC
Q psy11347 189 GAIVVTTPQEVSLLDVRKEIDFC---RKVN--IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVP 263 (294)
Q Consensus 189 ~vliv~~~~~~s~~~~~~~l~~l---~~~~--~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip 263 (294)
.+++|+.++..++..+.++.+.+ ++.+ ++..++|+||++. ....+++.+.+++++++.||
T Consensus 150 ~viVvt~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~---------------~~~~~~~~~~~~i~vLg~IP 214 (296)
T TIGR02016 150 EVIVIGSNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDG---------------SGEAQAFAREVGIPVLAAIP 214 (296)
T ss_pred eEEEEecchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCC---------------ccHHHHHHHHcCCCeEEECC
Confidence 99999999999998776666644 4543 6689999999751 12457888899999999999
Q ss_pred CCchhhhhccCCccccc-CCCHHHHHHHHhhC
Q psy11347 264 IDPLVTRHCDEGTSAID-TPSACVDAIQQIVQ 294 (294)
Q Consensus 264 ~~~~~~~a~~~g~~v~~-~~s~~~~~~~~la~ 294 (294)
++..+.++....-.+.. +.+...+.|.+|++
T Consensus 215 ~d~~i~~~~~~~~~~~~~~~~~~~~~f~~la~ 246 (296)
T TIGR02016 215 ADEELRRKSLAYQIVGSHATPRFGKLFEELAG 246 (296)
T ss_pred CCHHHHHHhcCCCeeecCCCHHHHHHHHHHHH
Confidence 99999884433223333 56668888888874
No 40
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.92 E-value=3.3e-24 Score=175.85 Aligned_cols=179 Identities=30% Similarity=0.464 Sum_probs=123.7
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccc
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFL 128 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (294)
+|+|+|+|||+||||+|.|||..| +||+++|+|++.++++.+||.+.......... ......+.....+.+..
T Consensus 1 ~I~v~s~kgG~GKSt~a~nLA~~l------~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL------KNVVLADCDVDAPNLHLFLKPEIEEEEDFIVG-GKKAVIDPELCISCGLC 73 (179)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHH------hCcEEEECCCCCCchhhhcCCCccccccceec-CCceEEchhhhccccch
Confidence 489999999999999999999998 58999999999999999999876432110000 00000011111111100
Q ss_pred cCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHH
Q psy11347 129 LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEI 208 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l 208 (294)
......+.+.+..+...++|||||+|+||+........+ ..+|.+++|+.++..++..+.+++
T Consensus 74 ------------~~~~~~~~~~~~~~~~~~~~d~viiDtpp~~~~~~~~~l-----~~aD~vliv~~~~~~~~~~~~~~~ 136 (179)
T cd03110 74 ------------GKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIASL-----TGADAALLVTEPTPSGLHDLERAV 136 (179)
T ss_pred ------------HHHHHHHHHHHHHhhhhcCCCEEEEECcCCCcHHHHHHH-----HcCCEEEEEecCCcccHHHHHHHH
Confidence 011122333332222123499999999999876544333 579999999999999999999999
Q ss_pred HHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccC
Q psy11347 209 DFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVP 263 (294)
Q Consensus 209 ~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip 263 (294)
+.+++.+.+ .++|+|+++. +.. ....++++++.+|+++++.||
T Consensus 137 ~~l~~~~~~-~~vV~N~~~~-------~~~----~~~~~~~~~~~~~~~vl~~ip 179 (179)
T cd03110 137 ELVRHFGIP-VGVVINKYDL-------NDE----IAEEIEDYCEEEGIPILGKIP 179 (179)
T ss_pred HHHHHcCCC-EEEEEeCCCC-------Ccc----hHHHHHHHHHHcCCCeEEeCC
Confidence 999988877 5899999873 111 233567788889999999987
No 41
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.91 E-value=8.2e-24 Score=177.14 Aligned_cols=168 Identities=23% Similarity=0.297 Sum_probs=127.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc-----ccccccCCCCcce---ecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE-----QVHQSASGWSPVF---LEE 118 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~-----~~~~~~~~~~~~~---~~~ 118 (294)
+++|+|+|.|||+||||++.+||..|+ ..|+||++||+|++.+.+...++.... .+......+.+.. ..+
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la--~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i~~~~~~ 94 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFA--QAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAICDTNIE 94 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHH--hCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhcccCCCC
Confidence 899999999999999999999999999 899999999999999888888876542 1111222222222 127
Q ss_pred CeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch
Q psy11347 119 NLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE 198 (294)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~ 198 (294)
+++++|.+.........+ ....+.++++.++ ++||+||||+||.........+. ..+|.+|+|+.++.
T Consensus 95 ~l~~l~~g~~~~~~~~~l------~~~~l~~~l~~l~--~~yD~ViiD~pp~~~~~~~~~~~----~~~D~vilV~~~~~ 162 (204)
T TIGR01007 95 NLFVITSGPVPPNPTELL------QSSNFKTLIETLR--KYFDYIIIDTPPIGTVTDAAIIA----RACDASILVTDAGE 162 (204)
T ss_pred CEEEEeCCCCCCCHHHHh------CcHHHHHHHHHHH--hcCCEEEEeCCCccccchHHHHH----HhCCeEEEEEECCC
Confidence 999999876543322111 1236778888886 34999999999843211111111 46899999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 199 VSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 199 ~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
.+.+.+.+.++.+++.+.+.+|+|+|+++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~ 192 (204)
T TIGR01007 163 IKKRDVQKAKEQLEQTGSNFLGVVLNKVDI 192 (204)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEEeCccc
Confidence 999999999999999999999999999874
No 42
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.91 E-value=6.1e-23 Score=174.24 Aligned_cols=187 Identities=16% Similarity=0.229 Sum_probs=128.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
|++|+|.+.||||||||++.|||.+|+ ..|++|+++|+|+|+ ++..+++.... ...|... ... .
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la--~~G~~VlliD~DpQ~-s~~~w~~~~~~-----~~~~~~~-----~~~-~-- 64 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALA--SDGKRVALFEADENR-PLTRWKENALR-----SNTWDPA-----CEV-Y-- 64 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHH--hCCCcEEEEeCCCCC-CHHHHHHhhcc-----ccCCCcc-----cee-c--
Confidence 579999999999999999999999999 899999999999986 44444432211 0001100 000 0
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHH
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRK 206 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~ 206 (294)
.......+...++.+..++ |||||||+||+.+......+ ..+|.||+|+.++..++..+.+
T Consensus 65 -------------~~~~~~~l~~~l~~~~~~~-yD~iiID~pp~~~~~~~~al-----~~aD~vliP~~ps~~d~~~~~~ 125 (231)
T PRK13849 65 -------------AADELPLLEAAYEDAELQG-FDYALADTHGGSSELNNTII-----ASSNLLLIPTMLTPLDIDEALS 125 (231)
T ss_pred -------------CCCHHHHHHHHHHHHhhCC-CCEEEEeCCCCccHHHHHHH-----HHCCEEEEeccCcHHHHHHHHH
Confidence 0001124566666664334 99999999998885544333 4799999999999999998888
Q ss_pred HHHHHHhc------CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee-eccCCCchhhhhccCCcccc
Q psy11347 207 EIDFCRKV------NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL-GSVPIDPLVTRHCDEGTSAI 279 (294)
Q Consensus 207 ~l~~l~~~------~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l-~~Ip~~~~~~~a~~~g~~v~ 279 (294)
+++.+.+. +++ ..+++||++. .+... ..+...++.+ +++++ ..|+.+..+.++...|.+..
T Consensus 126 ~~~~v~~~~~~~~~~l~-~~iv~~~~~~------~~~~~---~~~~~~~~~~--~~~vl~t~I~~r~~~~~a~~~G~~~~ 193 (231)
T PRK13849 126 TYRYVIELLLSENLAIP-TAILRQRVPV------GRLTT---SQRAMSDMLE--SLPVVDSPMHERDAFAAMKERGMLHL 193 (231)
T ss_pred HHHHHHHHHHHhCCCCC-eEEEEEeccc------ccCCH---HHHHHHHHHh--cCCCCCccccchHHHHHHHhcCCccc
Confidence 87776432 344 4699999852 11111 1223444444 45666 58999999999999999776
Q ss_pred c
Q psy11347 280 D 280 (294)
Q Consensus 280 ~ 280 (294)
.
T Consensus 194 ~ 194 (231)
T PRK13849 194 T 194 (231)
T ss_pred c
Confidence 4
No 43
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.90 E-value=2.1e-23 Score=174.91 Aligned_cols=164 Identities=23% Similarity=0.249 Sum_probs=124.5
Q ss_pred cCceEEEEEecCCCchHHHHHHHHHHHHhhcC-CCCcEEEEecCCCCCChhhhcccccccc----ccccC-CCCcce---
Q psy11347 45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSN-ESVDVGVLDLDICGPSMPRMMGLLNEQV----HQSAS-GWSPVF--- 115 (294)
Q Consensus 45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~-~g~~VlliD~D~~~~~l~~~lg~~~~~~----~~~~~-~~~~~~--- 115 (294)
..+++|+|+|+|||+||||++.|||.+|+ . .|+||++||+|++.++++..++.+...- ..... .+.+..
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la--~~~g~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~i~~~ 110 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLA--QEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPT 110 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHH--HhcCCeEEEEECCCCChhhhheeCCCCCCCHHHHHcCCCCCHHHHhccC
Confidence 35889999999999999999999999999 6 5999999999999988888888765421 11111 233322
Q ss_pred eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCc--cEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEe
Q psy11347 116 LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGL--EYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVV 193 (294)
Q Consensus 116 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~y--d~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv 193 (294)
..++++++|.+......... .....+.++++.++ +.| ||||||+||.........+. ..+|.+|+|
T Consensus 111 ~~~~l~vl~~g~~~~~~~~~------~~~~~l~~~l~~l~--~~y~~D~IiiD~pp~~~~~~~~~l~----~~aD~viiV 178 (207)
T TIGR03018 111 NIGRLSLLPAGRRHPNPTEL------LASQRMRSLLHELA--RRYPDRIIIIDTPPLLVFSEARALA----RLVGQIVLV 178 (207)
T ss_pred CCCCEEEEeCCCCCCCHHHH------hCcHHHHHHHHHHH--hhCCCCEEEEECCCCcchhHHHHHH----HhCCEEEEE
Confidence 23789999987654332111 12346788888887 337 99999999988643222221 369999999
Q ss_pred cCCchhhHHHHHHHHHHHHhcCCCeeEEEec
Q psy11347 194 TTPQEVSLLDVRKEIDFCRKVNIPIIGVVEN 224 (294)
Q Consensus 194 ~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN 224 (294)
+.++..+...+.+.++.++ +.+.+|+|+|
T Consensus 179 ~~~~~~~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 179 VEEGRTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred EECCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence 9999999999999999998 6788999998
No 44
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.90 E-value=4e-23 Score=180.70 Aligned_cols=177 Identities=21% Similarity=0.332 Sum_probs=133.6
Q ss_pred ChHHHHhhh-----ccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----cc
Q psy11347 35 GIELVKSHL-----SNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VH 105 (294)
Q Consensus 35 ~~~~i~~~~-----~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~ 105 (294)
..+.|+..+ ....++|+|+|+|||+||||++.|||..++ ..|+||++||+|+..+.++.+|+.+... ..
T Consensus 86 ~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la--~~g~~VllID~D~~~~~~~~~~~~~~~~gl~~~l 163 (274)
T TIGR03029 86 ALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFS--QLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDIL 163 (274)
T ss_pred HHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHH--hcCCeEEEEeCCCCCccHHHhcCCCCCCCHHHHh
Confidence 345555555 235799999999999999999999999999 8999999999999999888888875542 11
Q ss_pred cccCCCCcc---eeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHh
Q psy11347 106 QSASGWSPV---FLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYL 182 (294)
Q Consensus 106 ~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l 182 (294)
.+....+.+ ...++++++|.+....+..+.+ ....+..+++.++ +.|||||||+||.........+.
T Consensus 164 ~~~~~~~~i~~~~~~~~l~~lp~g~~~~~~~~~~------~~~~~~~~l~~l~--~~yD~ViiD~pp~~~~~d~~~~~-- 233 (274)
T TIGR03029 164 AGRSDLEVITHIPALENLSVLPAGAIPPNPQELL------ARPAFTDLLNKVM--GDYDVVIVDTPSAEHSSDAQIVA-- 233 (274)
T ss_pred CCCCCHHHeeecCCCCCEEEEeCcCCCCCHHHHh------CcHHHHHHHHHHH--hcCCEEEEeCCCcccccHHHHHH--
Confidence 111111111 1237899999987654332222 1236788888886 44999999999976422112221
Q ss_pred hcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEecc
Q psy11347 183 KGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENM 225 (294)
Q Consensus 183 ~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~ 225 (294)
..+|.+|+|+.++..+...+.+.++.+++.+.+.+|+|+|+
T Consensus 234 --~~~d~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 234 --TRARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred --HhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 46899999999999999999999999999999999999996
No 45
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.89 E-value=2.1e-23 Score=173.04 Aligned_cols=188 Identities=28% Similarity=0.426 Sum_probs=124.1
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccccc
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLL 129 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 129 (294)
|+|+|+|||+||||+|.+||.+|+ .+|++|+++|+|++.+++..+++... ...... .... .. +
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la--~~g~~VlliD~D~~~~~~~~~~~~~~-~~~~~~---~~~~---~~---~----- 63 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALA--RKGKKVLLIDLDPQAPNLSILFGVYD-ILREGL---ENAN---AI---L----- 63 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH--HTTS-EEEEEESTTSHHHHHHTTCHH-HHTTSS---HGHH---CH---H-----
T ss_pred CEEEcCCCCccHHHHHHHHHhccc--cccccccccccCcccccHHHHhcchh-hccccc---eehh---hh---h-----
Confidence 789999999999999999999999 79999999999999877766665510 000000 0000 00 0
Q ss_pred CCCCcceeec---CccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHH
Q psy11347 130 NSPDDAVIWR---GPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRK 206 (294)
Q Consensus 130 ~~~~~~~~~~---~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~ 206 (294)
...+...... . .....++++++.+.... ||+||||+|++........+ ..+|.+|+|+.++..+++.+.+
T Consensus 64 ~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~-yD~iiiD~~~~~~~~~~~~l-----~~ad~viv~~~~~~~~i~~~~~ 136 (195)
T PF01656_consen 64 KNFESQDIYQGEEY-LDPELLREILESLIKSD-YDYIIIDTPPGLSDPVRNAL-----AAADYVIVPIEPDPSSIEGAER 136 (195)
T ss_dssp ESCCHHHHHHHCHC-HHHHHHHHHHHHHHHTT-SSEEEEEECSSSSHHHHHHH-----HTSSEEEEEEESSHHHHHHHHH
T ss_pred hccchhhhhhhhhh-hHHHHHHHHHHHhhhcc-ccceeecccccccHHHHHHH-----HhCceeeeecCCcHHHHHHHHH
Confidence 0000000000 0 23346888888866444 99999999999987644444 4799999999999999999999
Q ss_pred HHHHHHhcC--CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCc-ee-eccCCCchhhh
Q psy11347 207 EIDFCRKVN--IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVP-FL-GSVPIDPLVTR 270 (294)
Q Consensus 207 ~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~-~l-~~Ip~~~~~~~ 270 (294)
+++.++..+ .+..++|+||++.. ..... .....+.....+.+ ++ +.||++.+++|
T Consensus 137 ~~~~l~~~~~~~~~~~vv~N~v~~~------~~~~~---~~~~~~~~~~~~~~~vl~~~Ip~~~~v~~ 195 (195)
T PF01656_consen 137 LIELLKRLGKKLKIIGVVINRVDPG------NESKL---QEEIEEIERELYVPVVLPGVIPYSEAVSE 195 (195)
T ss_dssp HHHHHHHHTHTEEEEEEEEEEETSC------CHHHH---HHHHHHHHHHCECCCBESEEEE--HHHHH
T ss_pred HHHHHHHhccccceEEEEEeeeCCC------ccchH---HHHHHHHHHHhCCCcCcCCcCCCCCCCCC
Confidence 999999887 55889999999631 11111 11223333333322 44 68999988764
No 46
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.89 E-value=2.1e-22 Score=169.32 Aligned_cols=224 Identities=17% Similarity=0.165 Sum_probs=154.1
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc-ccccc---cCC-----CCcce--e
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE-QVHQS---ASG-----WSPVF--L 116 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~-~~~~~---~~~-----~~~~~--~ 116 (294)
+.|+|. ||||+||||++.||+.+|+ ..|+||+.|.|||...+...+++-... .+... ... ++++. -
T Consensus 1 r~IAiY-GKGGIGKST~~~Nlsaala--~~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G 77 (273)
T PF00142_consen 1 RKIAIY-GKGGIGKSTTASNLSAALA--EMGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEG 77 (273)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHH--HTT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEE
T ss_pred CeEEEE-cCCCcccChhhhHHHHHHH--hccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEec
Confidence 346666 9999999999999999999 899999999999988776666664433 22111 111 12222 2
Q ss_pred ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccC-CCccEEEEcCCCCCChH-HHHHHHHhhcCCCcEEEEec
Q psy11347 117 EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWG-NGLEYLLIDTPPGTSDE-HLSLVQYLKGLPDIGAIVVT 194 (294)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~yd~IiiD~p~~~~~~-~~~~~~~l~~~~ad~vliv~ 194 (294)
..++..+.+|..-++... .....-...++++++..- ++||+|+.|.-+..-+. +..- +.+..++.+.+|+
T Consensus 78 ~~gi~CvEsGGPePGvGC-----aGRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDVVCGGFamP---ir~g~a~evyIVt 149 (273)
T PF00142_consen 78 FKGILCVESGGPEPGVGC-----AGRGIITALELLEELGAYEDDYDFVLYDVLGDVVCGGFAMP---IREGYAQEVYIVT 149 (273)
T ss_dssp GGGEEEEE---SCTTSSB-----HHHHHHHHHHHHHHTTTSTSTSSEEEEEEESSSSCTTTTHH---HHTTS-SEEEEEE
T ss_pred cCCceeeccCCCcccccc-----cccchhhhhhhHHhhhhhhcCCceEEEEEEeeeEEeeeehh---hhhccCCEEEEEe
Confidence 378888887743332221 122223455677766532 34899999998655221 1111 2225899999999
Q ss_pred CCchhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhh
Q psy11347 195 TPQEVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTR 270 (294)
Q Consensus 195 ~~~~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~ 270 (294)
..+..++-.++.+.+.+++. +.++.|+|.|+-. .....+.++++.++.|.++++.||++..+.+
T Consensus 150 Sge~mslyAANNI~~~i~~~~~~g~~~l~GiI~N~r~------------~~~e~~~v~~fa~~~g~~i~~~iPr~~~v~~ 217 (273)
T PF00142_consen 150 SGEFMSLYAANNICKAIKNFADRGGARLGGIICNSRN------------VDDEEEIVEDFAERIGTPIIAFIPRSEIVQR 217 (273)
T ss_dssp BSSHHHHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SS------------STTHHHHHHHHHHHHTSEEEEEE---HHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhccCCCceEEEEecCCC------------CCCchHHHHHHHHHcCCcEEEecCchHHHHH
Confidence 99999999999999888755 3578999999632 1223567899999999999999999999999
Q ss_pred hccCCccccc--CCCHHHHHHHHhhC
Q psy11347 271 HCDEGTSAID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 271 a~~~g~~v~~--~~s~~~~~~~~la~ 294 (294)
+-..+++|++ |+|+.+..|++||+
T Consensus 218 ae~~~~TVie~~P~s~~a~~yr~LA~ 243 (273)
T PF00142_consen 218 AELYGKTVIEAAPDSEQAQEYRELAR 243 (273)
T ss_dssp HHHCTS-CCCC-TTSHHHHHHHHHHH
T ss_pred HHHcCCEEEEeCCCcHHHHHHHHHHH
Confidence 9999999999 99999999999984
No 47
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=99.89 E-value=7.2e-22 Score=173.41 Aligned_cols=221 Identities=20% Similarity=0.265 Sum_probs=177.2
Q ss_pred cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----cccccCCCCcce-----
Q psy11347 45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQSASGWSPVF----- 115 (294)
Q Consensus 45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~~~~~~~~~~----- 115 (294)
+..+.++|++.|||+|-||+|.|+|+.++ ...+..|+++|+|.+.++-..+|+.++.. .......+++..
T Consensus 102 ~~~r~iafl~akgg~g~stlA~n~a~~l~-~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~ 180 (366)
T COG4963 102 QQGRELAFLGAKGGVGTSTLAHNLAKGLA-ILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLL 180 (366)
T ss_pred hhceEEEEEeecCCcchHHHHHHHHHHHh-hhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHHHH
Confidence 34799999999999999999999999999 56789999999999998888888888762 223333444422
Q ss_pred --eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEe
Q psy11347 116 --LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVV 193 (294)
Q Consensus 116 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv 193 (294)
..+++.+++....+....+ .....+..+++.+. ..||+||+|.|..+.+|+...+ ..+|.|+++
T Consensus 181 ~~~~~~l~ll~a~~~~~~~~d-------~~~~~~~~Ll~~~~--~~~~~vV~Dlp~~~~~~t~~vL-----~~Sd~iviv 246 (366)
T COG4963 181 TRLASGLKLLAAPTELAKNYD-------LKTGAVERLLDLLR--GSFDFVVVDLPNIWTDWTRQVL-----SGSDEIVIV 246 (366)
T ss_pred hccCCCceeecCCcchhhhcc-------cccchHHHHHHHhh--ccCCeEEEcCCCccchHHHHHH-----hcCCeEEEE
Confidence 2377777776544433322 23336677777776 3499999999988888887777 689999999
Q ss_pred cCCchhhHHHHHHHHHHHHhcCC--CeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchh-hh
Q psy11347 194 TTPQEVSLLDVRKEIDFCRKVNI--PIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLV-TR 270 (294)
Q Consensus 194 ~~~~~~s~~~~~~~l~~l~~~~~--~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~-~~ 270 (294)
++++..+++.++++++.+++.+. +...+|+|++... . ..+ .+++.+.+|++.+..+|.|..+ ..
T Consensus 247 ~e~sl~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~-----~-------~~~-~~dl~~~~~i~~~~~~p~d~~~~~~ 313 (366)
T COG4963 247 AEPSLASLRNAKELLDELKRLRPNDPKPILVLNRVGVP-----K-------RPE-PSDLEEILGIESLLVLPFDPALFGD 313 (366)
T ss_pred ecccHHHHHHHHHHHHHHHHhCCCCCCceEEeeecCCC-----C-------CCC-HHHHHHHhCCchhccccCCchhhhh
Confidence 99999999999999999997754 4789999998731 1 111 6788889999999999999777 79
Q ss_pred hccCCccccc--CCCHHHHHHHHhh
Q psy11347 271 HCDEGTSAID--TPSACVDAIQQIV 293 (294)
Q Consensus 271 a~~~g~~v~~--~~s~~~~~~~~la 293 (294)
|.++|+++.+ |.+++++++.+++
T Consensus 314 A~n~g~~l~E~~~~~~~~k~l~~la 338 (366)
T COG4963 314 AANNGRMLSEVDPGSPAAKALAQLA 338 (366)
T ss_pred hhccCccccccCCCChHHHHHHHHH
Confidence 9999999999 9999999999886
No 48
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.88 E-value=3.2e-21 Score=157.49 Aligned_cols=226 Identities=17% Similarity=0.169 Sum_probs=166.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcc-cccccccccc-------CCC-Ccce--
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMG-LLNEQVHQSA-------SGW-SPVF-- 115 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg-~~~~~~~~~~-------~~~-~~~~-- 115 (294)
++.|+|. ||||+||||++.|+|.+|+ +.|+||+++.|||..-+...++| .....+.... ..+ +++.
T Consensus 1 mr~iAiY-GKGGIGKSTts~N~aAAla--~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~ 77 (278)
T COG1348 1 MRQIAIY-GKGGIGKSTTSQNLAAALA--ELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFT 77 (278)
T ss_pred CceEEEe-cCCCcCcchhHHHHHHHHH--HcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheec
Confidence 4567776 9999999999999999999 89999999999998877777777 4444322211 111 1222
Q ss_pred eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhcc-CCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEec
Q psy11347 116 LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDW-GNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVT 194 (294)
Q Consensus 116 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~-~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~ 194 (294)
...++..+.+|..-++... .....-...++|+++.. .++.|+|++|..+..-+.-.+ --+.+..||.+.+|+
T Consensus 78 Gf~Gv~CVEsGGPepGvGC-----AGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFA--mPiReg~AdeiyIVt 150 (278)
T COG1348 78 GFGGVKCVESGGPEPGVGC-----AGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFA--MPIREGYADEIYIVT 150 (278)
T ss_pred cCCceEEeecCCCCCCCCc-----ccchHHHHHHHHHHhCCccccCCEEEEeccCceeeccee--eehhcccCcEEEEEe
Confidence 2367888877744333322 22222244577777742 243599999999765321111 112225899999999
Q ss_pred CCchhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhh
Q psy11347 195 TPQEVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTR 270 (294)
Q Consensus 195 ~~~~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~ 270 (294)
..+.+++-+++.+.+-+++. +.++-|+|.|.-. ..+..+.++++.+++|.+++..||+++.+..
T Consensus 151 Sge~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsr~------------~~~e~e~v~~fa~~igt~li~~vPr~~ivq~ 218 (278)
T COG1348 151 SGEMMALYAANNIAKGIRKYAKTGGVRLGGIICNSRS------------VDRERELVEAFAERLGTQLIHFVPRDNIVQK 218 (278)
T ss_pred cCchHHHHHHHHHHHHHHHHhhcCCcceeeEEecCCC------------cccHHHHHHHHHHHhCCceEeeccchHHHHH
Confidence 99999999999888888643 5778999998832 1223567899999999999999999999999
Q ss_pred hccCCccccc--CCCHHHHHHHHhhC
Q psy11347 271 HCDEGTSAID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 271 a~~~g~~v~~--~~s~~~~~~~~la~ 294 (294)
|-.+|++|++ |+|..+..|++||+
T Consensus 219 aE~~~kTvie~~P~s~~a~~yr~LA~ 244 (278)
T COG1348 219 AELNGKTVIEYAPDSNQAEEYRELAK 244 (278)
T ss_pred HHHcCcchhhhCcchhHHHHHHHHHH
Confidence 9999999999 99999999999984
No 49
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.86 E-value=4e-21 Score=189.80 Aligned_cols=181 Identities=12% Similarity=0.083 Sum_probs=136.6
Q ss_pred cChHHHHhhh-----ccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----c
Q psy11347 34 PGIELVKSHL-----SNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----V 104 (294)
Q Consensus 34 ~~~~~i~~~~-----~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~ 104 (294)
-..+.|+..+ ....++|+|+|.|||+||||+|.|||..|+ ..|+||++||+|++.++++..||..... +
T Consensus 528 Ea~r~lr~~l~~~~~~~~~kvi~vts~~~G~GKTt~a~nLA~~lA--~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~ 605 (754)
T TIGR01005 528 EELRVKEEAVAEAKSVAEPEVVETQRPRPVLGKSDIEANAAALIA--SGGKRALLIDADGRKAALSQILVAREVSGLLDL 605 (754)
T ss_pred HHHHHHHHHHhhhccCCCceEEEeecCCCCCChhHHHHHHHHHHH--hCCCeEEEEeCCCCchhHHHHhCCcccCChHHH
Confidence 3344554444 234689999999999999999999999999 8999999999999998999999876542 1
Q ss_pred ccccCCCCcce---eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHH
Q psy11347 105 HQSASGWSPVF---LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQY 181 (294)
Q Consensus 105 ~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~ 181 (294)
......+.+.. ..++++++|++....++.+.+ ....+.++++.++ +.||+||||+||.........+.
T Consensus 606 l~~~~~~~~~i~~~~~~~l~~l~~g~~~~~~~~ll------~~~~~~~~l~~l~--~~yD~IiID~pp~~~~~d~~~l~- 676 (754)
T TIGR01005 606 LAGLRSLLLDLTASGAASLPMLDSGLFPHGITELL------ASPAMFSLVIHAR--LYSDCVVVDVGTADPVRDMRAAA- 676 (754)
T ss_pred HcCCccHHHHhccCCCCCeeEecCCCCCCCHHHHh------ccHHHHHHHHHHH--hhCCEEEEcCCCcchhHHHHHhh-
Confidence 12222232222 247899999985443332221 1235677888876 44999999999988643322221
Q ss_pred hhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 182 LKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 182 l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
..+|.+|+|+..+..+...+.+.++.++..+.+..|+|+|+++.
T Consensus 677 ---~~~D~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~~ 720 (754)
T TIGR01005 677 ---RLAIIMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLDP 720 (754)
T ss_pred ---hhCCeEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCCh
Confidence 46899999999999999999999999999999999999999874
No 50
>PRK11519 tyrosine kinase; Provisional
Probab=99.85 E-value=1.6e-20 Score=183.86 Aligned_cols=180 Identities=17% Similarity=0.226 Sum_probs=139.6
Q ss_pred cChHHHHhhhc-----cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----c
Q psy11347 34 PGIELVKSHLS-----NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----V 104 (294)
Q Consensus 34 ~~~~~i~~~~~-----~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~ 104 (294)
-..+.||..+. ...++|+|+|.+||+||||++.|||..++ ..|+||++||+|+..++++.+||..... +
T Consensus 508 Ea~r~lrt~l~~~~~~~~~kvi~vts~~~geGKTt~a~nLA~~la--~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~ 585 (719)
T PRK11519 508 EAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVIS--QTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDI 585 (719)
T ss_pred HHHHHHHHHhhhhccCCCceEEEEECCCCCCCHHHHHHHHHHHHH--hCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHH
Confidence 34555555543 24689999999999999999999999999 8999999999999999999999876542 2
Q ss_pred ccccCCCCcce---eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHH
Q psy11347 105 HQSASGWSPVF---LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQY 181 (294)
Q Consensus 105 ~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~ 181 (294)
......+.+.. ..++++++|+|....++.+.+ ....+.++++.++ +.||+||||+||.........+.
T Consensus 586 l~~~~~l~~~i~~~~~~~l~~lp~g~~~~~~~ell------~s~~~~~ll~~l~--~~yD~ViiDtpP~~~v~Da~~l~- 656 (719)
T PRK11519 586 LIGQGDITTAAKPTSIANFDLIPRGQVPPNPSELL------MSERFAELVNWAS--KNYDLVLIDTPPILAVTDAAIVG- 656 (719)
T ss_pred hCCCCCHHHhecccCcCCEEEEeCCCCCCCHHHHh------hHHHHHHHHHHHH--hcCCEEEEeCCCcccchHHHHHH-
Confidence 22223333332 238999999987655544332 2447888999887 44999999999977532112221
Q ss_pred hhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347 182 LKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMAT 227 (294)
Q Consensus 182 l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~ 227 (294)
..+|.+|+|+..+......+...++.+++.+.++.|+|+|+++
T Consensus 657 ---~~~d~~l~Vvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~v~ 699 (719)
T PRK11519 657 ---RHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIF 699 (719)
T ss_pred ---HHCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCCeEEEEEeCCc
Confidence 5789999999999999999999999999999999999999986
No 51
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.85 E-value=2e-20 Score=183.31 Aligned_cols=179 Identities=16% Similarity=0.235 Sum_probs=138.5
Q ss_pred ChHHHHhhhcc-----CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----cc
Q psy11347 35 GIELVKSHLSN-----VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VH 105 (294)
Q Consensus 35 ~~~~i~~~~~~-----~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~ 105 (294)
..+.||..+.. ..++|+|+|.++|+||||+|.|||..++ ..|+||++||+|++.+.++..|+..... +.
T Consensus 514 a~r~lrt~l~~~~~~~~~kvI~vtS~~~g~GKTtva~nLA~~la--~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l 591 (726)
T PRK09841 514 AVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIA--QSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYL 591 (726)
T ss_pred HHHHHHHHhhhhccCCCCeEEEEecCCCCCCHHHHHHHHHHHHH--hCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHh
Confidence 45556665422 4689999999999999999999999999 8999999999999999998888876542 22
Q ss_pred cccCCCCccee---ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHh
Q psy11347 106 QSASGWSPVFL---EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYL 182 (294)
Q Consensus 106 ~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l 182 (294)
.+...++++.. .++++++|+|....++.+.+. ...+.++++.++ +.||+||||+||.........+.
T Consensus 592 ~~~~~~~~~i~~~~~~~l~vl~~g~~~~~p~ell~------~~~~~~ll~~l~--~~yD~IIIDtPP~~~~~Da~~la-- 661 (726)
T PRK09841 592 AGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLM------RDRMRQLLEWAN--DHYDLVIVDTPPMLAVSDAAVVG-- 661 (726)
T ss_pred CCCCCHHHheeccCCCCEEEEeCCCCCCCHHHHhC------cHHHHHHHHHHH--hcCCEEEEeCCCccccchHHHHH--
Confidence 22233333322 369999999876555443331 237888888887 44999999999987532222222
Q ss_pred hcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347 183 KGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMAT 227 (294)
Q Consensus 183 ~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~ 227 (294)
..+|.+|+|+..+......+...++.+.+.+.+..|+|+|+++
T Consensus 662 --~~ad~~llVvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~~ 704 (726)
T PRK09841 662 --RSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVI 704 (726)
T ss_pred --HhCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCceEEEEEeCcc
Confidence 4689999999999999999999999999999999999999986
No 52
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.84 E-value=1.2e-20 Score=148.32 Aligned_cols=107 Identities=37% Similarity=0.442 Sum_probs=92.3
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccc
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFL 128 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (294)
+|+|+++|||+||||++.++|..++ .+|.+|+++|+|++++++.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~~a~~~~--~~~~~~~~vd~D~~~~~~~---------------------------------- 44 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALA--KLGKRVLLLDADLGLANLD---------------------------------- 44 (139)
T ss_pred CEEEEcCCCCCcHHHHHHHHHHHHH--HCCCcEEEEECCCCCCCCC----------------------------------
Confidence 4789999999999999999999999 8999999999998764321
Q ss_pred cCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHH
Q psy11347 129 LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEI 208 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l 208 (294)
||+||+|+|++.+......+ ..+|.+++|+.++..+++.+.+++
T Consensus 45 -------------------------------yd~VIiD~p~~~~~~~~~~l-----~~aD~vviv~~~~~~s~~~~~~~l 88 (139)
T cd02038 45 -------------------------------YDYIIIDTGAGISDNVLDFF-----LAADEVIVVTTPEPTSITDAYALI 88 (139)
T ss_pred -------------------------------CCEEEEECCCCCCHHHHHHH-----HhCCeEEEEcCCChhHHHHHHHHH
Confidence 89999999999886655444 579999999999999999999999
Q ss_pred HHHHhc-CCCeeEEEecccc
Q psy11347 209 DFCRKV-NIPIIGVVENMAT 227 (294)
Q Consensus 209 ~~l~~~-~~~~~~vvvN~~~ 227 (294)
+.+.+. +....++|+||++
T Consensus 89 ~~l~~~~~~~~~~lVvN~~~ 108 (139)
T cd02038 89 KKLAKQLRVLNFRVVVNRAE 108 (139)
T ss_pred HHHHHhcCCCCEEEEEeCCC
Confidence 888654 4456889999986
No 53
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.83 E-value=1.7e-20 Score=161.91 Aligned_cols=176 Identities=22% Similarity=0.254 Sum_probs=108.8
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccc---ccccCCCCcceec---------
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQV---HQSASGWSPVFLE--------- 117 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~---~~~~~~~~~~~~~--------- 117 (294)
+.++++|||+||||++.++|..++ ..|+||++||+|+. ++++..|+.+.... ......+......
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a--~~g~~vLlvd~D~~-~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~ 78 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLA--EQGKKVLLVSTDPA-HSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYR 78 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHH--HCCCCceEEeCCCc-ccHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHH
Confidence 678889999999999999999999 89999999999996 69999998863100 0001111000000
Q ss_pred -cCeEEEecccccCCC----CcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH-HHHH-------HHHhhc
Q psy11347 118 -ENLSVMSIGFLLNSP----DDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE-HLSL-------VQYLKG 184 (294)
Q Consensus 118 -~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~-~~~~-------~~~l~~ 184 (294)
+.++.+..+...... ......++....-.+..+.+.+...+ ||+||+|+||....- .+.. ...+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~e~l~~~~~~~~l~~~~-yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d 157 (254)
T cd00550 79 QEVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAE-YDVVVFDTAPTGHTLRLLSLPTVLSWAREILSD 157 (254)
T ss_pred HHHHHHHHhhccchhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-CCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcC
Confidence 011111111000000 00000011111112333334443234 999999999853211 1111 122333
Q ss_pred CCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEecccccc
Q psy11347 185 LPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFV 229 (294)
Q Consensus 185 ~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~ 229 (294)
...+.+++|+.++..++..+.+.++.++..+++..++|+|++.+.
T Consensus 158 ~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~ 202 (254)
T cd00550 158 PERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPE 202 (254)
T ss_pred CcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCccc
Confidence 456789999999999999999999999999999999999998753
No 54
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.83 E-value=1.8e-20 Score=158.28 Aligned_cols=167 Identities=22% Similarity=0.273 Sum_probs=113.2
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC-------CChhhhcccccccccc--ccCCCCc---c---
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG-------PSMPRMMGLLNEQVHQ--SASGWSP---V--- 114 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~-------~~l~~~lg~~~~~~~~--~~~~~~~---~--- 114 (294)
+.++++|||+||||++.++|..++ ..|+||+++|+|+.. +++..+++..+..... ....... .
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a--~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLA--EEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERA 78 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHH--HCCCcEEEEECCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhhc
Confidence 468899999999999999999999 899999999999988 3555555531111000 0000000 0
Q ss_pred eeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEec
Q psy11347 115 FLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVT 194 (294)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~ 194 (294)
....+..+++.+...+++.+.+ .+.++++.+...+ ||+||+|+||............+....+|.+++|+
T Consensus 79 ~~~~~~~~~~~~~~~p~~~ell---------~~~~l~~~l~~~~-yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~ 148 (217)
T cd02035 79 WGGEGGLMLELAAALPGIEELA---------SLLAVFREFSEGL-YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVT 148 (217)
T ss_pred ccchhhhHHhHhccCCCHHHHH---------HHHHHHHHHhcCC-CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEe
Confidence 0012333344443333333322 3667777776333 99999999997432222233333223458999999
Q ss_pred CCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 195 TPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 195 ~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
.++..+++.+.+.++.++..+.+..++|+|++..
T Consensus 149 ~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~ 182 (217)
T cd02035 149 LPEKLPLYETERAITELALYGIPVDAVVVNRVLP 182 (217)
T ss_pred CCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 9999999999999999999999999999999863
No 55
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.83 E-value=1.1e-19 Score=135.95 Aligned_cols=102 Identities=25% Similarity=0.336 Sum_probs=89.9
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF 127 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (294)
+|++++.|||+||||++.+||..++ .. |++|+++|+|++.++
T Consensus 1 ~i~~~~~kgg~gkt~~~~~la~~~~--~~~~~~~~l~d~d~~~~~----------------------------------- 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALA--KEAGRRVLLVDLDLQFGD----------------------------------- 43 (106)
T ss_pred CEEEECCCCCCcHHHHHHHHHHHHH--hcCCCcEEEEECCCCCCC-----------------------------------
Confidence 4789999999999999999999999 77 999999999998632
Q ss_pred ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHH
Q psy11347 128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKE 207 (294)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~ 207 (294)
|+||+|+||+........+ ..+|.+++|+.++..++..+.++
T Consensus 44 ---------------------------------D~IIiDtpp~~~~~~~~~l-----~~aD~vlvvv~~~~~s~~~~~~~ 85 (106)
T cd03111 44 ---------------------------------DYVVVDLGRSLDEVSLAAL-----DQADRVFLVTQQDLPSIRNAKRL 85 (106)
T ss_pred ---------------------------------CEEEEeCCCCcCHHHHHHH-----HHcCeEEEEecCChHHHHHHHHH
Confidence 7999999999986655444 57899999999999999999999
Q ss_pred HHHHHhcCCC---eeEEEecc
Q psy11347 208 IDFCRKVNIP---IIGVVENM 225 (294)
Q Consensus 208 l~~l~~~~~~---~~~vvvN~ 225 (294)
++.+++.+.+ ...+|+||
T Consensus 86 ~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 86 LELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHcCCCCcCceEEEecC
Confidence 9999887643 78899996
No 56
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.82 E-value=3.5e-19 Score=147.98 Aligned_cols=185 Identities=17% Similarity=0.260 Sum_probs=125.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
|++|+|.|.|||+||||.+..||..|+ .+|.+|++||+||+.+- ..+..... ....|. +++.+..
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la--~~G~~V~lIDaDpn~pl-~~W~~~a~-----~~~~~~-----~~~~V~~-- 65 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELA--ARGARVALIDADPNQPL-AKWAENAQ-----RPGAWP-----DRIEVYE-- 65 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHH--HCCCeEEEEeCCCCCcH-HHHHHhcc-----ccCCCC-----CCeeEEe--
Confidence 689999999999999999999999999 89999999999998742 22211100 001111 1122211
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHH
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRK 206 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~ 206 (294)
......+...++...... |||||||+.++.+.... .++ ..+|.||+|+.++..+...+.+
T Consensus 66 --------------~~e~~~l~~~~e~a~~~~-~d~VlvDleG~as~~~~---~ai--a~sDlVlIP~~~s~lD~~eA~~ 125 (231)
T PF07015_consen 66 --------------ADELTILEDAYEAAEASG-FDFVLVDLEGGASELND---YAI--ARSDLVLIPMQPSQLDADEAAK 125 (231)
T ss_pred --------------ccchhhHHHHHHHHHhcC-CCEEEEeCCCCCchhHH---HHH--HHCCEEEECCCCChHHHHHHHH
Confidence 111225666666654333 99999999977764332 223 5799999999999999999999
Q ss_pred HHHHHHhc------CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee-eccCCCchhhhhccCCccc
Q psy11347 207 EIDFCRKV------NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL-GSVPIDPLVTRHCDEGTSA 278 (294)
Q Consensus 207 ~l~~l~~~------~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l-~~Ip~~~~~~~a~~~g~~v 278 (294)
+++++.+. +++ ..|+++|++.. ........+.++++ ++|++ ..+.....+.+-...|...
T Consensus 126 t~~~v~~~~~~~~~~ip-~~Vl~Tr~~~~---------~~~~~~~~~~e~~~--~lpvl~t~l~eR~Af~~m~~~G~l~ 192 (231)
T PF07015_consen 126 TFKWVRRLEKAERRDIP-AAVLFTRVPAA---------RLTRAQRIISEQLE--SLPVLDTELHERDAFRAMFSRGLLH 192 (231)
T ss_pred HHHHHHHHHHhhCCCCC-eeEEEecCCcc---------hhhHHHHHHHHHHh--cCCccccccccHHHHHHHHHhcchH
Confidence 98888654 234 57899997621 11111223345544 58888 5788889998888888544
No 57
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.79 E-value=2.4e-19 Score=149.46 Aligned_cols=207 Identities=26% Similarity=0.287 Sum_probs=115.3
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEe-cc
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMS-IG 126 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 126 (294)
.+|+|.|+|||+||||+|.|||.+|+ ..|++|.++|+|..++++..+++......... ++.+.. ..
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa--~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~-----------gi~Lp~p~~ 67 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALA--RMGKKVGLLDLDIRQPSLPRYLENRAAWAQRD-----------GIELPVPSH 67 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHH--CTT--EEEEE--TTT-HHHHHHHHHHHHHHHH-----------T------EE
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHH--HCCCeEEEEecCCCCCCHHHHHhccchhHHhc-----------CcccCCccc
Confidence 37999999999999999999999999 99999999999999999999997654432211 111110 01
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHH---
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLD--- 203 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~--- 203 (294)
..+......+..........+.+++..+. .+ +||||||+|+ .++.....+ . ..||.++.|..++..++.-
T Consensus 68 ~~L~~~~~~v~~~~~~~~~~L~q~l~~l~-~~-~DfLVID~PG-td~~lsr~A--h--s~ADtLiTPlNdSfvDfDllg~ 140 (261)
T PF09140_consen 68 FFLPPDQASVWEGENVEDKRLEQALADLE-GD-LDFLVIDTPG-TDDRLSRVA--H--SMADTLITPLNDSFVDFDLLGQ 140 (261)
T ss_dssp E-SSSHHHHTTS-HHHHHHHHHHHHHHHH-HH--SEEEEEE-S-SS-HHHHHH--H--HT-SEEEEEEESSHHHHCCCEE
T ss_pred eeecccccccccCcchhHHHHHHHHHHHh-cC-CCEEEEeCCC-CCcHHHHHH--H--HhCCEEEccCchhHHhHHHHhc
Confidence 11111000111111122347888888876 34 9999999994 443332222 1 4799999999887766521
Q ss_pred -------------HHHHHHHHHhc-----CCCeeEEEe-ccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCC
Q psy11347 204 -------------VRKEIDFCRKV-----NIPIIGVVE-NMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPI 264 (294)
Q Consensus 204 -------------~~~~l~~l~~~-----~~~~~~vvv-N~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~ 264 (294)
...++-..++. +...-+||+ ||... ....-.++..+.++++.+..|+.+..-+..
T Consensus 141 vD~~~~~v~~ps~Yse~vw~~r~~ra~~~~~~idWvv~rnRl~~------~~a~Nk~~~~~~l~~ls~rigfr~~~G~~e 214 (261)
T PF09140_consen 141 VDPETFKVIGPSVYSEMVWEARKLRAQADGKPIDWVVLRNRLSH------LDARNKRRVEEALEELSKRIGFRVAPGFSE 214 (261)
T ss_dssp E-TTTS-EEEE-HHHHHHHHHHHCCCCTSSS--EEEEEEESBTT--------HHHHHHHHHHHHHHHHHHT-EEEE--B-
T ss_pred cCcccceecCccHHHHHHHHHHHHHHHcCCCCccEEEEecCccH------HHhHHHHHHHHHHHHHHHhhCceeCCCcch
Confidence 22233333322 233445554 77642 111111123445667778889999988888
Q ss_pred CchhhhhccCCccccc
Q psy11347 265 DPLVTRHCDEGTSAID 280 (294)
Q Consensus 265 ~~~~~~a~~~g~~v~~ 280 (294)
..-+.|.-..|.++.+
T Consensus 215 Rvi~RelFp~GlTllD 230 (261)
T PF09140_consen 215 RVIYRELFPRGLTLLD 230 (261)
T ss_dssp -HHHCCCGGGT--GGG
T ss_pred hhhhHHhccccchhhc
Confidence 8888999999999998
No 58
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.78 E-value=4.3e-18 Score=126.98 Aligned_cols=99 Identities=27% Similarity=0.422 Sum_probs=84.5
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccc
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFL 128 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (294)
+|+|.+.|||+||||++.+||.+++ ..|.+|+++|+|++
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~--~~~~~vl~~d~d~~--------------------------------------- 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALA--RRGKRVLLIDLDPQ--------------------------------------- 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHH--hCCCcEEEEeCCCC---------------------------------------
Confidence 4889999999999999999999999 89999999999985
Q ss_pred cCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHH
Q psy11347 129 LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEI 208 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l 208 (294)
||+||+|+|++.+......+ ..+|.+++|+.++..+++.+.+++
T Consensus 40 -------------------------------~d~viiD~p~~~~~~~~~~l-----~~ad~viv~~~~~~~s~~~~~~~~ 83 (104)
T cd02042 40 -------------------------------YDYIIIDTPPSLGLLTRNAL-----AAADLVLIPVQPSPLDLDGLEKLL 83 (104)
T ss_pred -------------------------------CCEEEEeCcCCCCHHHHHHH-----HHCCEEEEeccCCHHHHHHHHHHH
Confidence 79999999999886555444 579999999999999999999998
Q ss_pred H---HHHhc--CCCeeEEEec
Q psy11347 209 D---FCRKV--NIPIIGVVEN 224 (294)
Q Consensus 209 ~---~l~~~--~~~~~~vvvN 224 (294)
+ ..+.. .....++|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~vv~n 104 (104)
T cd02042 84 ETLILEDRLNPDLDILGILPT 104 (104)
T ss_pred HHHHHHHhcCCCCceEEEEeC
Confidence 8 33322 3457788876
No 59
>KOG2825|consensus
Probab=99.77 E-value=1.2e-18 Score=143.88 Aligned_cols=227 Identities=19% Similarity=0.254 Sum_probs=151.0
Q ss_pred CcChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCC--
Q psy11347 33 DPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASG-- 110 (294)
Q Consensus 33 ~~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~-- 110 (294)
+|..+.+.+.+++....+.|++|||||||||.++.||..|+ +.+.+|++|-+||. ++++..|+.+....+....+
T Consensus 4 dple~~l~nil~q~slKwifVGGKGGVGKTTcs~sLAvqla--~~r~~vLiISTDPA-HNlSDAF~qkftk~pt~V~Gf~ 80 (323)
T KOG2825|consen 4 DPLEATLQNILEQTSLKWIFVGGKGGVGKTTCSCSLAVQLA--KVRESVLIISTDPA-HNLSDAFSQKFTKTPTKVEGFE 80 (323)
T ss_pred CccchhHHHHhhcceeeEEEEcCcCCcCccchhhHHHHHHh--ccCCceEEeecCcc-cchHHHHHHHhcCCCccccChh
Confidence 46666888899999999999999999999999999999999 89999999999995 47777776554432222211
Q ss_pred -CCcceeccCeEEEecccccCCC--Ccc-----------eeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC----
Q psy11347 111 -WSPVFLEENLSVMSIGFLLNSP--DDA-----------VIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS---- 172 (294)
Q Consensus 111 -~~~~~~~~~l~~~~~~~~~~~~--~~~-----------~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~---- 172 (294)
+-...+++++.+-.......+. .+. ...++-...-.+.+++..++..+ ||.||+|+.|.-.
T Consensus 81 nLfAMEIDp~~e~~~~~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~~-F~~vVFDTAPTGHTLRl 159 (323)
T KOG2825|consen 81 NLFAMEIDPNVEMGDMPEMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGMN-FDVVVFDTAPTGHTLRL 159 (323)
T ss_pred hheeeecCCchhhhhhHHHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhccc-cceEEeccCCCcceehh
Confidence 2222222221110000000000 000 00011122224667777777445 9999999997321
Q ss_pred --------------------------------------h--------HH----HHHHHHhhcCCCcEEEEecCCchhhHH
Q psy11347 173 --------------------------------------D--------EH----LSLVQYLKGLPDIGAIVVTTPQEVSLL 202 (294)
Q Consensus 173 --------------------------------------~--------~~----~~~~~~l~~~~ad~vliv~~~~~~s~~ 202 (294)
. .. -.+...+....++..|+|+.++..|+.
T Consensus 160 L~fP~~lek~lgKl~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflsly 239 (323)
T KOG2825|consen 160 LQFPTTLEKGLGKLLSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLY 239 (323)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHH
Confidence 0 00 111222333567888999999999999
Q ss_pred HHHHHHHHHHhcCCCeeEEEeccccc-----cCCCCCCCCccCCCCchhHHHHHhhcCCceeeccC
Q psy11347 203 DVRKEIDFCRKVNIPIIGVVENMATF-----VCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVP 263 (294)
Q Consensus 203 ~~~~~l~~l~~~~~~~~~vvvN~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip 263 (294)
.+.|++..+.+.+++...+|+|+.-+ .|++|..+..++.++.+.+++..+.+.+--+..+|
T Consensus 240 EteRliqeL~k~~idthnIIVNQLL~~~~~~~ck~C~ar~k~Q~kyLdqi~elyedfhv~klPl~~ 305 (323)
T KOG2825|consen 240 ETERLIQELAKQGIDTHNIIVNQLLFPDNEVSCKKCAARRKMQSKYLDQIEELYEDFHVVKLPLLP 305 (323)
T ss_pred HHHHHHHHHHhcCCcccceeeeeccCCCCccchHHHHHHHHHHHHHhhhHHHHHhhcceeecccch
Confidence 99999999999999999999999543 36778778888888888888888776544443333
No 60
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=99.71 E-value=4.6e-17 Score=143.69 Aligned_cols=170 Identities=23% Similarity=0.310 Sum_probs=105.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccc
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFL 128 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (294)
++.|++|||||||||+|+.+|.+++ .+|+||+++..||. +++...||.+...-+..... .+|++.+.....
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A--~~G~rtLlvS~Dpa-~~L~d~l~~~~~~~~~~v~~------~~~L~a~eid~~ 72 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALA--RRGKRTLLVSTDPA-HSLSDVLGQKLGGEPTKVEG------VPNLSAMEIDPE 72 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH--HTTS-EEEEESSTT-THHHHHHTS--BSS-EEETT------CSSEEEEE--HH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHh--hCCCCeeEeecCCC-ccHHHHhCCcCCCCCeEecC------CCCceeeecCHH
Confidence 3677889999999999999999999 89999999999995 57888888754322111110 022222111000
Q ss_pred -----------------cC--CC----Ccce-eecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC------------
Q psy11347 129 -----------------LN--SP----DDAV-IWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS------------ 172 (294)
Q Consensus 129 -----------------~~--~~----~~~~-~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~------------ 172 (294)
.. .. .... ..++-.....+..+.+.+.. +.||+||+|+||.-.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~-~~~D~IVvDt~ptg~tLrlL~lP~~l~ 151 (305)
T PF02374_consen 73 AELEEYWEEVQKDLSSLLPLIGLERILDEELSSLPGLDELAALLRLADLLES-GEYDLIVVDTPPTGHTLRLLSLPERLR 151 (305)
T ss_dssp HHHHHHHHHHHHGCSTCHHCHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHH-CSTSEEEEESSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchhhhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHh-CCCCEEEECCCCcHHHHHHHhHHHHHH
Confidence 00 00 0000 00111222244455555543 349999999997321
Q ss_pred --------------------------h---------------HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHH
Q psy11347 173 --------------------------D---------------EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFC 211 (294)
Q Consensus 173 --------------------------~---------------~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l 211 (294)
. ........+.....+.+++|++|+..++..+.+++..+
T Consensus 152 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~i~Et~r~~~~L 231 (305)
T PF02374_consen 152 WWLDRLLKLRRKIRSLARPLSGLGLGAVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLAIAETERLLTEL 231 (305)
T ss_dssp HHHHHHHHHHHCHHHHHHHHCHSHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcchHHHHHHHHHHH
Confidence 0 00011122323345679999999999999999999999
Q ss_pred HhcCCCeeEEEeccccc
Q psy11347 212 RKVNIPIIGVVENMATF 228 (294)
Q Consensus 212 ~~~~~~~~~vvvN~~~~ 228 (294)
+..+++.-++|+||+-+
T Consensus 232 ~~~gi~v~~vVvNrvlp 248 (305)
T PF02374_consen 232 KLYGIPVDAVVVNRVLP 248 (305)
T ss_dssp HHTT-EEEEEEEEEE-T
T ss_pred HhcCCccCeEEEEcccc
Confidence 99999999999999864
No 61
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=99.67 E-value=1.1e-16 Score=128.20 Aligned_cols=140 Identities=23% Similarity=0.321 Sum_probs=97.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc-ccccccC------------CCCcc
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE-QVHQSAS------------GWSPV 114 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~-~~~~~~~------------~~~~~ 114 (294)
|+|+|+|.+||+||||+|.+||..|+ ..+++|+++|+|...+++..+++.+.. .+..... .+..+
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la--~~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~ 78 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALA--RKGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDH 78 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHH--HTTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH--hcCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHH
Confidence 68999999999999999999999999 889999999999999999999988776 2211111 11222
Q ss_pred ee---ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEE
Q psy11347 115 FL---EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAI 191 (294)
Q Consensus 115 ~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vl 191 (294)
.. ..++++++....... ......+.+..+++.++. .||+||+|+|+......... .+ ..+|.++
T Consensus 79 ~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~li~~l~~--~yd~IivD~~~~~~~~~~~~--~l--~~~D~ii 145 (157)
T PF13614_consen 79 IYSDAHDGLDLLPPPSSPED-------LEELTPEDVEELIDALKE--HYDYIIVDLPSSLSNPDTQA--VL--ELADKII 145 (157)
T ss_dssp CEEESSTTEEEE--SSSSHH-------HHHHTSHHHHHHHHHHHH--HSSEEEEEEESTTTHTHHHH--HH--TTHSEEE
T ss_pred heeccCCCeEEecCCCCCCc-------hhhcCHHHHHHHHHHHHH--cCCEEEEECcCCccHHHHHH--HH--HHCCEEE
Confidence 22 267777765432211 111234477888888873 49999999999887654321 22 6899999
Q ss_pred EecCCchhhHH
Q psy11347 192 VVTTPQEVSLL 202 (294)
Q Consensus 192 iv~~~~~~s~~ 202 (294)
+|+.++..+++
T Consensus 146 ~v~~~~~~s~~ 156 (157)
T PF13614_consen 146 LVVRPDVTSIR 156 (157)
T ss_dssp EEEETTHHHHH
T ss_pred EEECCCccccc
Confidence 99999998875
No 62
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.62 E-value=2.3e-15 Score=132.70 Aligned_cols=176 Identities=20% Similarity=0.269 Sum_probs=111.7
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccC-C---------------C
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSAS-G---------------W 111 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~-~---------------~ 111 (294)
..|.+++|||||||||+|+++|..++ ..|++|+++-+||. +++...|+.+......... . |
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA--~~g~kvLlvStDPA-hsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~ 78 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA--ESGKKVLLVSTDPA-HSLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYW 78 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH--HcCCcEEEEEeCCC-CchHhhhccccCCchhhcCCCCceeeecHHHHHHHHH
Confidence 46788889999999999999999999 88999999999995 5888888774332111111 0 1
Q ss_pred CcceeccCeEEEecccc--cCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC-----------------
Q psy11347 112 SPVFLEENLSVMSIGFL--LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS----------------- 172 (294)
Q Consensus 112 ~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~----------------- 172 (294)
+.+. +.+.-...... ....+.....++-.....+..+.+.+...+ ||+||+|+||...
T Consensus 79 ~~v~--~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~-yD~IV~DtaPTG~TLRlL~lP~~~~~~~~~ 155 (322)
T COG0003 79 DEVK--DYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGE-YDVIVVDTAPTGHTLRLLSLPEVLGWYLEK 155 (322)
T ss_pred HHHH--HHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccC-CCEEEEcCCChHHHHHHhccHHHHHHHHHh
Confidence 1110 11111111110 111112222233333335566666666445 9999999997321
Q ss_pred --------------------------hHHHHHHH-----------HhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcC
Q psy11347 173 --------------------------DEHLSLVQ-----------YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVN 215 (294)
Q Consensus 173 --------------------------~~~~~~~~-----------~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~ 215 (294)
+..+..++ .+....-..+.+|..|+..++..+.+.+..+...+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l~e~~ra~~~l~~~~ 235 (322)
T COG0003 156 LFKPRRKRMVKALKSLSTAAGSPLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRAVERLSLYG 235 (322)
T ss_pred hhhhHHHHHHHhhhhcccccCCcCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEecccccchHHHHHHHHHHHHcC
Confidence 00111111 11112245678999999999999999999999999
Q ss_pred CCeeEEEecccccc
Q psy11347 216 IPIIGVVENMATFV 229 (294)
Q Consensus 216 ~~~~~vvvN~~~~~ 229 (294)
++..++++|++-+.
T Consensus 236 i~v~~vi~n~~~p~ 249 (322)
T COG0003 236 IPVDAVIVNKILPD 249 (322)
T ss_pred Cchheeeeeccccc
Confidence 99999999998753
No 63
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.55 E-value=1.8e-13 Score=108.39 Aligned_cols=143 Identities=20% Similarity=0.201 Sum_probs=83.9
Q ss_pred EEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh-hhhccccccccccccCCCCcceeccCeEE--Eecccc
Q psy11347 52 VLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM-PRMMGLLNEQVHQSASGWSPVFLEENLSV--MSIGFL 128 (294)
Q Consensus 52 v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l-~~~lg~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~ 128 (294)
.+.|++|+||||++.+++..+. ..|.+|+++|+|++.... ...++... .+.+....+++.+ ++.+..
T Consensus 3 ~~~G~~GsGKTt~~~~l~~~~~--~~g~~v~ii~~D~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 72 (148)
T cd03114 3 GITGVPGAGKSTLIDALITALR--ARGKRVAVLAIDPSSPFSGGAILGDRI--------RMERHASDPGVFIRSLATRGF 72 (148)
T ss_pred EEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEeCCCCCCcccchhcCce--------EhhheecCCCceEEEcCCcCc
Confidence 4459999999999999999999 899999999999864321 12222110 1111111233332 333311
Q ss_pred cCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHH
Q psy11347 129 LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEI 208 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l 208 (294)
..... ....+.++.++.. +||+||||+ ++........+ ..+|.+|+|++|+ ..+++.++
T Consensus 73 ~~~~~-----------~~~~~~~~~~~~~-~~D~iiIDt-aG~~~~~~~~~-----~~Ad~~ivv~tpe---~~D~y~~~ 131 (148)
T cd03114 73 LGGLS-----------RATPEVIRVLDAA-GFDVIIVET-VGVGQSEVDIA-----SMADTTVVVMAPG---AGDDIQAI 131 (148)
T ss_pred ccccc-----------hhHHHHHHHHHhc-CCCEEEEEC-CccChhhhhHH-----HhCCEEEEEECCC---chhHHHHh
Confidence 11111 1233344444323 399999999 56665444333 5799999999999 44444444
Q ss_pred HHHHhcCCCeeEEEecccc
Q psy11347 209 DFCRKVNIPIIGVVENMAT 227 (294)
Q Consensus 209 ~~l~~~~~~~~~vvvN~~~ 227 (294)
+...-... -.+++|+++
T Consensus 132 k~~~~~~~--~~~~~~k~~ 148 (148)
T cd03114 132 KAGIMEIA--DIVVVNKAD 148 (148)
T ss_pred hhhHhhhc--CEEEEeCCC
Confidence 44322222 357888864
No 64
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.48 E-value=1.4e-12 Score=113.40 Aligned_cols=168 Identities=17% Similarity=0.193 Sum_probs=97.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
+++|+++ |++|+||||++.+||..++ ..|++|+++|+|+....... ....|.. ..++.+++..
T Consensus 72 ~~vi~l~-G~~G~GKTTt~akLA~~l~--~~g~~V~li~~D~~r~~a~~-----------ql~~~~~---~~~i~~~~~~ 134 (272)
T TIGR00064 72 PNVILFV-GVNGVGKTTTIAKLANKLK--KQGKSVLLAAGDTFRAAAIE-----------QLEEWAK---RLGVDVIKQK 134 (272)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHH--hcCCEEEEEeCCCCCHHHHH-----------HHHHHHH---hCCeEEEeCC
Confidence 5677777 8999999999999999999 88999999999985422100 0001111 1123333322
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH--HHHHHHhh-------cCCCcEEEEecCCc
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH--LSLVQYLK-------GLPDIGAIVVTTPQ 197 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~--~~~~~~l~-------~~~ad~vliv~~~~ 197 (294)
.. .+ ........+..... ++||+||||+|+....+. +..+..+. ....|.+++|+...
T Consensus 135 ~~----~d--------p~~~~~~~l~~~~~-~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~ 201 (272)
T TIGR00064 135 EG----AD--------PAAVAFDAIQKAKA-RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT 201 (272)
T ss_pred CC----CC--------HHHHHHHHHHHHHH-CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC
Confidence 11 00 01122233333332 349999999998764222 11111111 12378899998886
Q ss_pred hhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 198 EVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 198 ~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..-..+.......+..+ ..++|+|+++.. .....+-.+...+++|+.
T Consensus 202 -~~~~~~~~~~~f~~~~~--~~g~IlTKlDe~------------~~~G~~l~~~~~~~~Pi~ 248 (272)
T TIGR00064 202 -TGQNALEQAKVFNEAVG--LTGIILTKLDGT------------AKGGIILSIAYELKLPIK 248 (272)
T ss_pred -CCHHHHHHHHHHHhhCC--CCEEEEEccCCC------------CCccHHHHHHHHHCcCEE
Confidence 44455555444444444 469999999831 112344555556777777
No 65
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=99.43 E-value=7.4e-12 Score=105.91 Aligned_cols=148 Identities=19% Similarity=0.170 Sum_probs=88.3
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEec
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSI 125 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (294)
|++++.+.++||||||||++.+||.+++ ..|.+|+++|+|++++++..+...... .+.++.
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~--~~g~~vl~iD~D~~n~~~~~~~~l~~~----------------~~~i~~- 61 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKA--SKGQKPLCIDTDPVNATFEGYKALNVR----------------RLNIMD- 61 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHH--hCCCCEEEEECCCCCchhhhHHhcCCc----------------ceeccc-
Confidence 6789999999999999999999999999 899999999999987654333211111 111110
Q ss_pred ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHH------HHHHhhcCCCcEEEE-ecCCch
Q psy11347 126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLS------LVQYLKGLPDIGAIV-VTTPQE 198 (294)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~------~~~~l~~~~ad~vli-v~~~~~ 198 (294)
. .......+..+++.+...+ -| +|||.++..-.++.. +...+.+..-+.++. |++...
T Consensus 62 ~-------------~~i~~r~fD~Lve~i~~~~-~d-vIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh~vi~gg~ 126 (241)
T PRK13886 62 G-------------DEINTRNFDALVEMIASTE-GD-VIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVTGGQ 126 (241)
T ss_pred C-------------CccchhhHHHHHHHHhccC-CC-EEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEEEEECCCc
Confidence 0 0011224556666654222 45 678888754332221 112222245565654 666665
Q ss_pred hhHHHHHHHHHHHHhcCCCeeEEE-ecccc
Q psy11347 199 VSLLDVRKEIDFCRKVNIPIIGVV-ENMAT 227 (294)
Q Consensus 199 ~s~~~~~~~l~~l~~~~~~~~~vv-vN~~~ 227 (294)
.....+..+.+.++..+-...+|| .|.+-
T Consensus 127 ~~~dtl~~~~~l~~~~~~~~~~Vvw~N~~~ 156 (241)
T PRK13886 127 ALLDTVSGFAQLASQFPAECLFVVWLNPYW 156 (241)
T ss_pred ccHHHHHHHHHHHHHcCCCceEEEEecCcc
Confidence 555555555555555543344555 78754
No 66
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.41 E-value=1.4e-12 Score=110.49 Aligned_cols=196 Identities=17% Similarity=0.117 Sum_probs=111.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCC-cceeccCeEEE-eccc
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWS-PVFLEENLSVM-SIGF 127 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~ 127 (294)
|.|++...|+|||+++..|+.+|+ .+|++|.++--=..+..- .....+.. ......... +......+.+- |..+
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~--~~g~~v~~~KPv~~g~~~-~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~sp 77 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALR--EAGYSVAGYKPVQSGCEE-TDRNGDAL-ALQRLSGLPLDYEDVNPYRFEEPLSP 77 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH--HcCCceEEEeeEecCCCC-CCCcHHHH-HHHHHcCCCCChhhcCceeeCCCCCH
Confidence 678999999999999999999999 899999886521111000 00000000 000111110 00000111110 0000
Q ss_pred ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHH---HHHHHhhcCCCcEEEEecCCchhhHHHH
Q psy11347 128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHL---SLVQYLKGLPDIGAIVVTTPQEVSLLDV 204 (294)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~---~~~~~l~~~~ad~vliv~~~~~~s~~~~ 204 (294)
.+.. ... ........+.+.++.+. ++||+||||+++++..... .....+. ....-+++|+.++..++..+
T Consensus 78 ~~a~---~~~-~~~~~~~~i~~~~~~l~--~~~D~viIEg~gg~~~~~~~~~~~adl~~-~l~~pvilV~~~~~~~i~~~ 150 (222)
T PRK00090 78 HLAA---ALE-GVAIDLEKISAALRRLA--QQYDLVLVEGAGGLLVPLTEDLTLADLAK-QLQLPVILVVGVKLGCINHT 150 (222)
T ss_pred HHHH---HHh-CCCCCHHHHHHHHHHHH--hhCCEEEEECCCceeccCCCCCcHHHHHH-HhCCCEEEEECCCCcHHHHH
Confidence 0000 000 01122345666777665 3499999999977532211 1111111 12234889999999899999
Q ss_pred HHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCC
Q psy11347 205 RKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPID 265 (294)
Q Consensus 205 ~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~ 265 (294)
...++.++..+.+..++|+|+++.. .... ..+..+.+.+.+++++++.||+-
T Consensus 151 ~~~i~~l~~~~~~i~gvIlN~~~~~------~~~~---~~~~~~~l~~~~gi~vlg~ip~~ 202 (222)
T PRK00090 151 LLTLEAIRARGLPLAGWVANGIPPE------PGLR---HAENLATLERLLPAPLLGELPYL 202 (222)
T ss_pred HHHHHHHHHCCCCeEEEEEccCCCc------chhH---HHHHHHHHHHHcCCCeEEecCCC
Confidence 9999999888999999999998631 0111 12345677777899999999984
No 67
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.41 E-value=2.1e-11 Score=99.20 Aligned_cols=166 Identities=17% Similarity=0.215 Sum_probs=97.1
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccccc
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLL 129 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 129 (294)
+.++.|+.|+||||++.++|..++ ..|.+|+++|+|...+.....+.... ...++.+.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~--~~g~~v~~i~~D~~~~~~~~~l~~~~--------------~~~~~~~~~~~~~- 64 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK--KKGKKVLLVAADTYRPAAIEQLRVLG--------------EQVGVPVFEEGEG- 64 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEEcCCCChHHHHHHHHhc--------------ccCCeEEEecCCC-
Confidence 456669999999999999999999 78999999999987654433322100 0123444433210
Q ss_pred CCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hHHHHHHHHhhc-CCCcEEEEecCCchhhHHHHHH
Q psy11347 130 NSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DEHLSLVQYLKG-LPDIGAIVVTTPQEVSLLDVRK 206 (294)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~~~~~~~~l~~-~~ad~vliv~~~~~~s~~~~~~ 206 (294)
. .....+.+.+..... .+||+||+|+++... ...+..+..+.. ...|.+++|+.+.. ..+....
T Consensus 65 ---~--------~~~~~~~~~~~~~~~-~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~-~~~~~~~ 131 (173)
T cd03115 65 ---K--------DPVSIAKRAIEHARE-ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMT-GQDAVNQ 131 (173)
T ss_pred ---C--------CHHHHHHHHHHHHHh-CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCC-ChHHHHH
Confidence 0 111233344444332 339999999998652 223333322221 24788888888742 2233333
Q ss_pred HHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 207 EIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 207 ~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+..+..+ ..++|+|+++.. . +....+. +.+..++|+.
T Consensus 132 ~~~~~~~~~--~~~viltk~D~~-------~----~~g~~~~-~~~~~~~p~~ 170 (173)
T cd03115 132 AKAFNEALG--ITGVILTKLDGD-------A----RGGAALS-IRAVTGKPIK 170 (173)
T ss_pred HHHHHhhCC--CCEEEEECCcCC-------C----Ccchhhh-hHHHHCcCeE
Confidence 333333444 579999998832 1 1122333 6777788775
No 68
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.40 E-value=2.2e-11 Score=113.52 Aligned_cols=173 Identities=17% Similarity=0.221 Sum_probs=107.8
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEec
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSI 125 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (294)
+|+.+.|.++++|+||||++.+|+++|+ ++|++|..+...++..+...+ ........ .+++...
T Consensus 2 ~m~~i~I~gt~s~~GKT~it~~L~~~L~--~~G~~V~~fK~Gpd~~d~~~~---------~~~~g~~~----~~ld~~~- 65 (451)
T PRK01077 2 RMPALVIAAPASGSGKTTVTLGLMRALR--RRGLRVQPFKVGPDYIDPAYH---------TAATGRPS----RNLDSWM- 65 (451)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH--hCCCCcceeecCCCcccHHHH---------HHHhCCCc----ccCCcee-
Confidence 3678999999999999999999999999 899999999886542111000 00000000 1111000
Q ss_pred ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh---------HHHHHHHHhhcCCCcEEEEecCC
Q psy11347 126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD---------EHLSLVQYLKGLPDIGAIVVTTP 196 (294)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~---------~~~~~~~~l~~~~ad~vliv~~~ 196 (294)
.....+++.+..+. .+||++||+...++.+ ....++..+ .+. ||+|++.
T Consensus 66 ----------------~~~~~v~~~~~~~~--~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l---~~p-viLV~~~ 123 (451)
T PRK01077 66 ----------------MGEELVRALFARAA--QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLL---GAP-VVLVVDA 123 (451)
T ss_pred ----------------CCHHHHHHHHHHhc--ccCCEEEEECCCccccCCccCCCCCCHHHHHHHh---CCC-EEEEECC
Confidence 01236677777765 3499999998855422 123333333 566 7777776
Q ss_pred chhhHHH--HHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhh
Q psy11347 197 QEVSLLD--VRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVT 269 (294)
Q Consensus 197 ~~~s~~~--~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~ 269 (294)
...+... +...+..+ ..++++.++|+|+++. . +..+...+.++..|++++++||+++.+.
T Consensus 124 ~~~~~~~a~l~~~~~~~-~~~i~i~GvI~N~v~~------~------~~~~~l~~~l~~~gipvLG~IP~~~~l~ 185 (451)
T PRK01077 124 SGMAQSAAALVLGFATF-DPDVRIAGVILNRVGS------E------RHYQLLREALERCGIPVLGALPRDAALA 185 (451)
T ss_pred chHHHHHHHHHHHHHHh-CCCCCEEEEEEECCCC------h------hHHHHHHHHHHhcCCCEEEEeeCCcccC
Confidence 6533322 22222222 2367899999999852 1 1123445666668999999999998874
No 69
>PRK10867 signal recognition particle protein; Provisional
Probab=99.39 E-value=7.2e-12 Score=115.00 Aligned_cols=168 Identities=17% Similarity=0.186 Sum_probs=100.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
+.+.++.|.+|+||||++.+||.+|+ .. |++|+++|+|++.+.....+.. .....++.+.+.+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~--~~~G~kV~lV~~D~~R~aa~eQL~~--------------~a~~~gv~v~~~~ 163 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLK--KKKKKKVLLVAADVYRPAAIEQLKT--------------LGEQIGVPVFPSG 163 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH--HhcCCcEEEEEccccchHHHHHHHH--------------HHhhcCCeEEecC
Confidence 45666668999999999999999999 77 9999999999976543222211 0111234444332
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hHHHHHHHHhhc-CCCcEEEEecCCchhhHHH
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DEHLSLVQYLKG-LPDIGAIVVTTPQEVSLLD 203 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~~~~~~~~l~~-~~ad~vliv~~~~~~s~~~ 203 (294)
.. ........+.++.....+ ||+|||||++... ...+..+..+.. ...+.+++|++... -++
T Consensus 164 ~~------------~dp~~i~~~a~~~a~~~~-~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~--gq~ 228 (433)
T PRK10867 164 DG------------QDPVDIAKAALEEAKENG-YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMT--GQD 228 (433)
T ss_pred CC------------CCHHHHHHHHHHHHHhcC-CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEeccc--HHH
Confidence 10 011224445555544334 9999999998663 222222222211 24667888887643 244
Q ss_pred HHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 204 VRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 204 ~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
+....+.+.+ .++..++|+|+.+.. .....+-.+...+++|+.
T Consensus 229 av~~a~~F~~-~~~i~giIlTKlD~~------------~rgG~alsi~~~~~~PI~ 271 (433)
T PRK10867 229 AVNTAKAFNE-ALGLTGVILTKLDGD------------ARGGAALSIRAVTGKPIK 271 (433)
T ss_pred HHHHHHHHHh-hCCCCEEEEeCccCc------------ccccHHHHHHHHHCcCEE
Confidence 4444444443 355679999998831 112245666667777765
No 70
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.37 E-value=2.2e-12 Score=97.69 Aligned_cols=113 Identities=25% Similarity=0.296 Sum_probs=70.1
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccc-c
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFL-L 129 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 129 (294)
.++.+|||+||||++.++|.+++ .+|++|+++|+|+ +++...++.... +...++-.+.. .
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~--~~g~~V~~id~D~--~~~~~~~~~~~~---------------~~~~~i~~g~~~~ 62 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLA--EKGKPVLAIDADP--DDLPERLSVEVG---------------EIKLLLVMGMGRP 62 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCc--hhhHHHHhhccC---------------CceEEEEeccccc
Confidence 35678999999999999999999 8899999999999 233222222111 11111111111 1
Q ss_pred CCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEe
Q psy11347 130 NSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVV 193 (294)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv 193 (294)
........ ....+++++..+.... ||++++|+++++......+. ..+|.+++|
T Consensus 63 ~~~g~~~~-----~n~~~~~~l~~~~~~~-~~~vivDt~ag~e~~~~~~~-----~~~d~vv~v 115 (116)
T cd02034 63 GGEGCYCP-----ENALLNALLRHLVLTR-DEQVVVDTEAGLEHLGRGTA-----EGVDLLVVV 115 (116)
T ss_pred CCCCCEeh-----hhHHHHHHHHHeEccC-CCEEEEecHHHHHHHHhhcc-----ccCCEEEEe
Confidence 11111111 1126778888864334 99999999998864333222 478988876
No 71
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=99.36 E-value=1.7e-11 Score=102.24 Aligned_cols=202 Identities=16% Similarity=0.155 Sum_probs=121.6
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEE--
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVM-- 123 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~-- 123 (294)
|+++++|++.-.|||||++++.|+.+|. ..|++|.+.--=-.+.. .--........+.......-...-+...+
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~--~~g~~~~~~KPVqsG~~--~~~~~~D~~~l~~~~~~~~~~~~~~py~f~~ 76 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALK--QQGYSVAGYKPVQTGSE--ETAENSDALVLQRLSGLDLSYELINPYRFKE 76 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHH--hCCCeeEEECceeeCCC--CCCCCchHHHHHHhcCCCcccccccceecCC
Confidence 6899999999999999999999999999 89999988632111100 00000000111111111110001111111
Q ss_pred ecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH---HHHHHHhhcCCCcEEEEecCCchhh
Q psy11347 124 SIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH---LSLVQYLKGLPDIGAIVVTTPQEVS 200 (294)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~---~~~~~~l~~~~ad~vliv~~~~~~s 200 (294)
|..+.+....+ ......+.+..-+..+. +.||+|||.+.+|+..+. ..+...+.+.... ||+|+.....+
T Consensus 77 P~sPhlAa~~e----g~~I~~~~l~~~l~~l~--~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lp-vILV~~~~LGt 149 (223)
T COG0132 77 PLSPHLAAELE----GRTIDLEKLSQGLRQLL--KKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLP-VILVVGIKLGT 149 (223)
T ss_pred CCCcHHHHhhc----CCcccHHHHHHHHHhhh--cccCEEEEeCCCceeeecCCcccHHHHHHHcCCC-EEEEecCCccH
Confidence 22222222211 11233345555555555 349999999998863211 1222223323445 89999999999
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchh
Q psy11347 201 LLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLV 268 (294)
Q Consensus 201 ~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~ 268 (294)
++++.-.++.++..+++..|+|+|++.+. ..-. ......+.+..+.|+++.+|+.++.
T Consensus 150 INHtlLt~eal~~~gl~l~G~I~n~~~~~-------~~~~---~~~~~~l~~~~~~p~~g~~p~~~~~ 207 (223)
T COG0132 150 INHTLLTVEALRARGLPLAGWVANGINPE-------LDHY---AEINATLLKRIGAPLLGIIPYLPES 207 (223)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEccCCCc-------hhHH---HHHHHHHHHhcCCCccccccCCccc
Confidence 99999999999999999999999998731 1111 1112245567799999999997654
No 72
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.35 E-value=1.3e-11 Score=90.00 Aligned_cols=95 Identities=39% Similarity=0.560 Sum_probs=74.7
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccccC
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLN 130 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (294)
.++++++|+||||++.+||..|+ +.|++|+++|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~--~~g~~v~~~~--------------------------------------------- 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALA--KRGKRVLLID--------------------------------------------- 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEC---------------------------------------------
Confidence 45667779999999999999999 8899999999
Q ss_pred CCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHH
Q psy11347 131 SPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDF 210 (294)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~ 210 (294)
|+||+|++++...........+ ..+|.+++|+.++..++....+..+.
T Consensus 35 ------------------------------d~iivD~~~~~~~~~~~~~~~~--~~~~~vi~v~~~~~~~~~~~~~~~~~ 82 (99)
T cd01983 35 ------------------------------DYVLIDTPPGLGLLVLLCLLAL--LAADLVIIVTTPEALAVLGARRLTEV 82 (99)
T ss_pred ------------------------------CEEEEeCCCCccchhhhhhhhh--hhCCEEEEecCCchhhHHHHHHHHHH
Confidence 8999999999876542111222 57999999999999999999988654
Q ss_pred HH---hcCCCeeEEEec
Q psy11347 211 CR---KVNIPIIGVVEN 224 (294)
Q Consensus 211 l~---~~~~~~~~vvvN 224 (294)
.. ..+....++|+|
T Consensus 83 ~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 83 VLELAIEGLRPVGVVVN 99 (99)
T ss_pred HHHhhccCCceEEEEeC
Confidence 43 334446677766
No 73
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.33 E-value=5.6e-11 Score=105.52 Aligned_cols=168 Identities=17% Similarity=0.205 Sum_probs=94.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
+.+++++ |.+|+||||++.+||..++ ..|++|+++|+|++.......+ ..| ....++.+++..
T Consensus 114 ~~vi~lv-GpnGsGKTTt~~kLA~~l~--~~g~~V~Li~~D~~r~~a~eql-----------~~~---a~~~~i~~~~~~ 176 (318)
T PRK10416 114 PFVILVV-GVNGVGKTTTIGKLAHKYK--AQGKKVLLAAGDTFRAAAIEQL-----------QVW---GERVGVPVIAQK 176 (318)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHH--hcCCeEEEEecCccchhhHHHH-----------HHH---HHHcCceEEEeC
Confidence 4566666 6999999999999999999 8899999999998653211100 001 111234444332
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh--HHHHHHHHhh-------cCCCcEEEEecCCc
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD--EHLSLVQYLK-------GLPDIGAIVVTTPQ 197 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~--~~~~~~~~l~-------~~~ad~vliv~~~~ 197 (294)
... ++ .....+.+..... ++||+||||+|+.... ..+..+..+. ....+.+++|+...
T Consensus 177 ~~~-dp-----------a~~v~~~l~~~~~-~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~ 243 (318)
T PRK10416 177 EGA-DP-----------ASVAFDAIQAAKA-RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDAT 243 (318)
T ss_pred CCC-CH-----------HHHHHHHHHHHHh-CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECC
Confidence 110 00 0122222222221 3499999999987642 1112222211 12466778888776
Q ss_pred hhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 198 EVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 198 ~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
. ............+.. ...++|+|+.+.. .....+-.+...+++|+.
T Consensus 244 ~-g~~~~~~a~~f~~~~--~~~giIlTKlD~t------------~~~G~~l~~~~~~~~Pi~ 290 (318)
T PRK10416 244 T-GQNALSQAKAFHEAV--GLTGIILTKLDGT------------AKGGVVFAIADELGIPIK 290 (318)
T ss_pred C-ChHHHHHHHHHHhhC--CCCEEEEECCCCC------------CCccHHHHHHHHHCCCEE
Confidence 3 334444443333333 4569999999831 112344455566788777
No 74
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.32 E-value=3.6e-11 Score=110.36 Aligned_cols=170 Identities=18% Similarity=0.193 Sum_probs=100.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
.+.+.+++|..|+||||++.+||.++. ...|++|+++|+|...+.....+... ...-++.+...+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~-~~~g~kV~lV~~D~~R~~a~~QL~~~--------------a~~~gvp~~~~~ 162 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK-KKQGKKVLLVACDLYRPAAIEQLKVL--------------GQQVGVPVFALG 162 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HhCCCeEEEEeccccchHHHHHHHHH--------------HHhcCCceEecC
Confidence 356888889999999999999999986 14799999999999765422222110 000122222211
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hHHHHHHHHhhc-CCCcEEEEecCCchhhHHH
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DEHLSLVQYLKG-LPDIGAIVVTTPQEVSLLD 203 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~~~~~~~~l~~-~~ad~vliv~~~~~~s~~~ 203 (294)
. .. .......+.++.+...+ ||+||||+++... ...+..+..+.. ...+.+++|++... -++
T Consensus 163 ~----~~--------~P~~i~~~al~~~~~~~-~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t--gq~ 227 (428)
T TIGR00959 163 K----GQ--------SPVEIARRALEYAKENG-FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMT--GQD 227 (428)
T ss_pred C----CC--------CHHHHHHHHHHHHHhcC-CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccc--hHH
Confidence 0 00 01123455555554234 9999999998653 222322222211 24677888888653 345
Q ss_pred HHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 204 VRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 204 ~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
+....+.+. ..++..++|+|+.+.. .....+..+...+++|+.
T Consensus 228 ~~~~a~~f~-~~v~i~giIlTKlD~~------------~~~G~~lsi~~~~~~PI~ 270 (428)
T TIGR00959 228 AVNTAKTFN-ERLGLTGVVLTKLDGD------------ARGGAALSVRSVTGKPIK 270 (428)
T ss_pred HHHHHHHHH-hhCCCCEEEEeCccCc------------ccccHHHHHHHHHCcCEE
Confidence 555555554 2235669999998731 112346677777777776
No 75
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=99.32 E-value=7.1e-11 Score=100.67 Aligned_cols=200 Identities=17% Similarity=0.177 Sum_probs=115.6
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhh-cccccc--ccccccCCCCcceeccCeEE
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRM-MGLLNE--QVHQSASGWSPVFLEENLSV 122 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~-lg~~~~--~~~~~~~~~~~~~~~~~l~~ 122 (294)
|++.+.|+++..|+|||+++..|+.+|. .+|.+|.++.-= ..+.... -+.... ........... . .+.+..
T Consensus 1 m~~~ifIt~t~t~vGKT~vt~~L~~~l~--~~g~~v~~~KPi--~~g~~~~~~~~~~~D~~~l~~~~~~~~-~-~~~~~p 74 (231)
T PRK12374 1 MLKRFFITGTDTSVGKTVVSRALLQALA--SQGKTVAGYKPV--AKGSKETPEGLRNKDALVLQSVSSIEL-P-YEAVNP 74 (231)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEECcc--ccCCccCCCCCchHHHHHHHHhcCCCC-C-HHhccC
Confidence 5667999999999999999999999999 899999997432 2111000 000010 00011101000 0 000100
Q ss_pred EecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH---HHHHHHhhcCCCcEEEEecCCchh
Q psy11347 123 MSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH---LSLVQYLKGLPDIGAIVVTTPQEV 199 (294)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~---~~~~~~l~~~~ad~vliv~~~~~~ 199 (294)
.+......... .........+.+.++.+. ..||+||||+.+++.... ...........+. +++|+.....
T Consensus 75 ~~~~~~~a~~~----~~~~i~~~~i~~~~~~l~--~~~D~VlVEGaGgl~~p~~~~~~~~d~~~~~~~p-vilV~~~~lg 147 (231)
T PRK12374 75 IALSEEESSVA----HSCPINYTLMSNGLANLS--EKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLP-VLMVVGIQEG 147 (231)
T ss_pred eecCCCcChHH----cCCcCCHHHHHHHHHHHH--hhCCEEEEECCCCcceeccCcccHHHHHHHhCCC-EEEEECCCcC
Confidence 00110000000 011111234555555555 349999999997543221 1111111113445 7888888888
Q ss_pred hHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchh
Q psy11347 200 SLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLV 268 (294)
Q Consensus 200 s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~ 268 (294)
.+..+...++.+...+++..++|+|++++. .....+..+.+.+..++++++.||+.+.+
T Consensus 148 ~in~~lLt~~~l~~~~~~~~gvV~N~~~~~----------~~~~~~~~~~l~~~~~~~~lg~iP~~~~~ 206 (231)
T PRK12374 148 CINHALLTAQAIANDGLPLIGWVANRINPG----------LAHYAEIIDVLGKKLPAPLIGELPYLPRA 206 (231)
T ss_pred hHHHHHHHHHHHHhCCCcEEEEEEeCccCc----------hhhhhhHHHHHHHhcCCCEEEEeCCCCCC
Confidence 899999999999999999999999998631 11122335566667799999999987543
No 76
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.27 E-value=1.5e-11 Score=99.46 Aligned_cols=155 Identities=16% Similarity=0.247 Sum_probs=92.1
Q ss_pred EEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccc---ccccCCCCcceeccCeEE-Eeccc
Q psy11347 52 VLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQV---HQSASGWSPVFLEENLSV-MSIGF 127 (294)
Q Consensus 52 v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~---~~~~~~~~~~~~~~~l~~-~~~~~ 127 (294)
|++..+|+||||++.+|+.+|+ ++|+||.+++-...... . .+.+...+ ......|... ..+.. .|...
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~--~~g~~V~~~kP~~~~~~--~-~d~d~~~i~~~~~~~~~~~~~---~~~~~~~~~~p 73 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLK--KAGYSVGYYKPVQTGIE--K-TNSDALLLQNISGTALDWDEV---NPYAFALPLSP 73 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHH--HCCCcEEEEEeeeeCCC--C-CchHHHHHHHHcCCCCchhcc---CCeeeCCCCCh
Confidence 6788999999999999999999 89999999753322110 0 00000000 0111112211 11111 00000
Q ss_pred ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH------HHHHHHHhhcCCCcEEEEecCCchhhH
Q psy11347 128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE------HLSLVQYLKGLPDIGAIVVTTPQEVSL 201 (294)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~------~~~~~~~l~~~~ad~vliv~~~~~~s~ 201 (294)
... ... ...+.....+.+.++.+. +.||+||||+|++.... ....+.. ..+.+|+|+.....++
T Consensus 74 ~~~---~~~-~~~~~~~~~i~~~~~~l~--~~~D~viid~~g~~~~~~~~~~~~~dl~~~----~~~~vilV~~~~~~~~ 143 (166)
T TIGR00347 74 HIA---ADQ-EGRPIDLEELSKHLRTLE--QKYDFVLVEGAGGLCVPITEEYTTADLIKL----LQLPVILVVRVKLGTI 143 (166)
T ss_pred HHH---HHH-hCCCCCHHHHHHHHHHHH--hcCCEEEEEcCCccccCCCCCCcHHHHHHH----hCCCEEEEECCCCcHH
Confidence 000 000 001122235667777765 33999999999764321 1222322 3445899999999999
Q ss_pred HHHHHHHHHHHhcCCCeeEEEec
Q psy11347 202 LDVRKEIDFCRKVNIPIIGVVEN 224 (294)
Q Consensus 202 ~~~~~~l~~l~~~~~~~~~vvvN 224 (294)
+.+...++.+++.+.++.|+|+|
T Consensus 144 ~~~~~~~~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 144 NHTLLTVEHARQTGLTLAGVILN 166 (166)
T ss_pred HHHHHHHHHHHHCCCCeEEEEeC
Confidence 99999999999999999999998
No 77
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.26 E-value=3.5e-10 Score=103.42 Aligned_cols=148 Identities=9% Similarity=0.059 Sum_probs=87.3
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccc
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFL 128 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (294)
.+..+.|.+|+||||++..||.+|+ ..|++|+++++|++.+.....+.... ...++.+.....
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~--~~G~kV~lV~~D~~R~aA~eQLk~~a--------------~~~~vp~~~~~~- 163 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQ--RKGFKPCLVCADTFRAGAFDQLKQNA--------------TKARIPFYGSYT- 163 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HCCCCEEEEcCcccchhHHHHHHHHh--------------hccCCeEEeecC-
Confidence 4555557899999999999999999 88999999999997653322221100 001222221110
Q ss_pred cCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh--HHHHHHHHhhc-CCCcEEEEecCCchhhHHHHH
Q psy11347 129 LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD--EHLSLVQYLKG-LPDIGAIVVTTPQEVSLLDVR 205 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~--~~~~~~~~l~~-~~ad~vliv~~~~~~s~~~~~ 205 (294)
.........+.++.++.. +||+|||||++.... ..+..+..+.. ...+.+++|+++... +.+.
T Consensus 164 -----------~~dp~~i~~~~l~~~~~~-~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G--q~a~ 229 (429)
T TIGR01425 164 -----------ESDPVKIASEGVEKFKKE-NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG--QAAE 229 (429)
T ss_pred -----------CCCHHHHHHHHHHHHHhC-CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC--hhHH
Confidence 001112445566666533 499999999976643 22222222211 346788899876532 2223
Q ss_pred HHHHHHHhcCCCeeEEEeccccc
Q psy11347 206 KEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 206 ~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
...+.+.+ .....++|+++.|.
T Consensus 230 ~~a~~F~~-~~~~~g~IlTKlD~ 251 (429)
T TIGR01425 230 AQAKAFKD-SVDVGSVIITKLDG 251 (429)
T ss_pred HHHHHHHh-ccCCcEEEEECccC
Confidence 33344432 23456999999984
No 78
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.25 E-value=3e-10 Score=101.88 Aligned_cols=174 Identities=17% Similarity=0.176 Sum_probs=103.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
.++|+++ |.+|+||||++..||..+. ..|++|+++++|++.......+. ......++.+....
T Consensus 241 ~~vI~LV-GptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~RiaAvEQLk--------------~yae~lgipv~v~~ 303 (436)
T PRK11889 241 VQTIALI-GPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQ--------------DYVKTIGFEVIAVR 303 (436)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcchHHHHHHH--------------HHhhhcCCcEEecC
Confidence 3566665 5699999999999999999 88999999999987522111111 00111223322211
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh--HHHHHHHHhh-cCCCcEEEEecCCchhhHHH
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD--EHLSLVQYLK-GLPDIGAIVVTTPQEVSLLD 203 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~--~~~~~~~~l~-~~~ad~vliv~~~~~~s~~~ 203 (294)
....+.+.+..++...+||+||||+++.... ..+.-+..+. ....+.+++|++++ ..-++
T Consensus 304 ----------------d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsAT-tk~~d 366 (436)
T PRK11889 304 ----------------DEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS-MKSKD 366 (436)
T ss_pred ----------------CHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCc-cChHH
Confidence 1225556776665222499999999976542 2222222221 23456678887654 33345
Q ss_pred HHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee--e---ccCCCchh
Q psy11347 204 VRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL--G---SVPIDPLV 268 (294)
Q Consensus 204 ~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l--~---~Ip~~~~~ 268 (294)
+...++.++.. ..-++|+.+.|.. . ....+-.+....++|+. + .||+|-..
T Consensus 367 ~~~i~~~F~~~--~idglI~TKLDET-------~-----k~G~iLni~~~~~lPIsyit~GQ~VPeDI~~ 422 (436)
T PRK11889 367 MIEIITNFKDI--HIDGIVFTKFDET-------A-----SSGELLKIPAVSSAPIVLMTDGQDVKKNIHI 422 (436)
T ss_pred HHHHHHHhcCC--CCCEEEEEcccCC-------C-----CccHHHHHHHHHCcCEEEEeCCCCCCcchhh
Confidence 56677777764 4559999999831 1 12234455556666665 3 47777544
No 79
>PRK13768 GTPase; Provisional
Probab=99.25 E-value=4.9e-11 Score=102.91 Aligned_cols=44 Identities=27% Similarity=0.443 Sum_probs=36.9
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCC
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPS 92 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~ 92 (294)
|+. +.++.|+||+||||++.+++.+++ ..|++|+++|+|++...
T Consensus 1 ~~~-~i~v~G~~G~GKTt~~~~~~~~l~--~~g~~v~~i~~D~~~~~ 44 (253)
T PRK13768 1 MMY-IVFFLGTAGSGKTTLTKALSDWLE--EQGYDVAIVNLDPAVEY 44 (253)
T ss_pred CcE-EEEEECCCCccHHHHHHHHHHHHH--hcCCceEEEECCCcccc
Confidence 344 455557799999999999999999 89999999999997543
No 80
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=99.25 E-value=1.6e-10 Score=90.03 Aligned_cols=126 Identities=24% Similarity=0.263 Sum_probs=95.9
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccccC
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLN 130 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (294)
.|+.++| +|||+++..|+..|. .+|.+|..++...+
T Consensus 3 ~~~~~~~-~Gkt~~~~~l~~~l~--~~~~~v~~~kp~~~----------------------------------------- 38 (134)
T cd03109 3 GFGTGTD-IGKTVATAILARALK--EKGYRVAPLKPVQT----------------------------------------- 38 (134)
T ss_pred EEeCCCC-cCHHHHHHHHHHHHH--HCCCeEEEEecCCC-----------------------------------------
Confidence 3444555 999999999999999 89999999976542
Q ss_pred CCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC------hHHHHHHHHhhcCCCcEEEEecCCchhhHHHH
Q psy11347 131 SPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS------DEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDV 204 (294)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~------~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~ 204 (294)
||++||++++++. ......+..+ .+. +++|++++..+++++
T Consensus 39 -----------------------------~d~vliEGaGg~~~p~~~~~~~~d~~~~~---~~~-vllV~~~~~g~i~~a 85 (134)
T cd03109 39 -----------------------------YDFVLVEGAGGLCVPLKEDFTNADVAKEL---NLP-AILVTSAGLGSINHA 85 (134)
T ss_pred -----------------------------CCEEEEECCCccccCCCCCCCHHHHHHHh---CCC-EEEEEcCCCCcHhHH
Confidence 4788888876543 1123344333 444 789999999999999
Q ss_pred HHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccC
Q psy11347 205 RKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVP 263 (294)
Q Consensus 205 ~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip 263 (294)
...++.++..++...+++.|+++. ..... ....+.+.+..++++++.||
T Consensus 86 ~~~~~~l~~~g~~i~gvi~N~~~~-------~~~~~---~~~~~~i~~~~gip~LG~IP 134 (134)
T cd03109 86 FLTIEAARIKGIILNGVLGNVIVE-------KEGLA---TLNVETIERLTGIPVLGIVP 134 (134)
T ss_pred HHHHHHHHhcCCceeEEEEccCCC-------ccchh---hhhHHHHHHhcCCCEEEeCC
Confidence 999999999999999999999762 22211 13467888899999999987
No 81
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=99.24 E-value=3.4e-11 Score=83.68 Aligned_cols=78 Identities=65% Similarity=1.109 Sum_probs=62.0
Q ss_pred cEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccC
Q psy11347 161 EYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240 (294)
Q Consensus 161 d~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~ 240 (294)
||+|||+|||.++..+.+++.+ ..+..|+|++|...++..+.+.++.+++.+++.+|+|-||....|+.|.++..++
T Consensus 2 D~LiiD~PPGTgD~~l~~~~~~---~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~~~Cp~Cg~~~~iF 78 (81)
T PF10609_consen 2 DYLIIDLPPGTGDEHLTLMQYL---PIDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSYFVCPHCGERIYIF 78 (81)
T ss_dssp CEEEEE--SCSSSHHHHHHHHH-----SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-EEE-TTT--EEETT
T ss_pred CEEEEeCCCCCCcHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccCCCCCCCeecCC
Confidence 8999999999999999888887 4788999999999999999999999999999999999999999999999888776
Q ss_pred C
Q psy11347 241 P 241 (294)
Q Consensus 241 ~ 241 (294)
.
T Consensus 79 g 79 (81)
T PF10609_consen 79 G 79 (81)
T ss_dssp T
T ss_pred C
Confidence 3
No 82
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=99.23 E-value=8.4e-11 Score=97.94 Aligned_cols=187 Identities=18% Similarity=0.231 Sum_probs=109.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCc-ceeccCeEEEecc
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSP-VFLEENLSVMSIG 126 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 126 (294)
+.|.+++...|+|||+++..|+.+|. .+|.+|.++--=.++... +.+.. .......... ......+.+-
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~--~~g~~v~~~KPi~~~~~~----d~d~~-~~~~~~~~~~~~~~~~~~~~~--- 70 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALR--RRGIKVGYFKPIQTGPED----DEDAE-LIRELFGLSEPPDDPSPYTFD--- 70 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHH--HTTSEEEEEEEEEESCCC----SSHHH-HHHHHCCTCCCHHHHECEEES---
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH--hCCCceEEEeeeEecCCC----CchHH-HHHHHhCCCcccccccccccC---
Confidence 46899999999999999999999999 899999886321111000 00000 0011111110 0000111110
Q ss_pred cccCCCC-cceeecCccchHHHHHH-HHhhccCCCccEEEEcCCCCCCh------HHHHHHHHhhcCCCcEEEEecCCch
Q psy11347 127 FLLNSPD-DAVIWRGPKKNTMIRQF-LSEVDWGNGLEYLLIDTPPGTSD------EHLSLVQYLKGLPDIGAIVVTTPQE 198 (294)
Q Consensus 127 ~~~~~~~-~~~~~~~~~~~~~l~~~-l~~l~~~~~yd~IiiD~p~~~~~------~~~~~~~~l~~~~ad~vliv~~~~~ 198 (294)
.+. .............+.++ ++.+. +.+|++||++..+... .....+..+ .+. ||+|+....
T Consensus 71 ----~~~~~~~~~~~~~~~~~~~~i~~~~l~--~~~D~vlVEGag~~~~~~~~~~~n~dia~~L---~a~-vIlV~~~~~ 140 (199)
T PF13500_consen 71 ----EPASPHLAAELEGVDIDLERIIYKELA--EEYDVVLVEGAGGLMVPIFSGDLNADIAKAL---GAP-VILVASGRL 140 (199)
T ss_dssp ----SSS-HHHHHHHHT----HHHHHHHHCH--TTTCEEEEEESSSTTSECCTTEEHHHHHHHH---T-E-EEEEEESST
T ss_pred ----cccCHHHHhhccCCcccHHHHHHHHHh--hcCCEEEEeCCcccCcccccChHHHHHHHHc---CCC-EEEEeCCCC
Confidence 000 00000000011123333 35555 3499999999965531 123444444 566 788888888
Q ss_pred hhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhh
Q psy11347 199 VSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVT 269 (294)
Q Consensus 199 ~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~ 269 (294)
.+++++...++.++..+.+..|+|+|++.. .+..+.+.+..++++++.||+++.+.
T Consensus 141 g~i~~~l~~~~~~~~~g~~v~GvI~N~~~~---------------~~~~~~l~~~~~i~vlg~iP~~~~L~ 196 (199)
T PF13500_consen 141 GTINHTLLTIEALKQRGIRVLGVILNRVPE---------------PENLEALREKSGIPVLGVIPEDPDLS 196 (199)
T ss_dssp THHHHHHHHHHHHHCTTS-EEEEEEEECTC---------------CHHHHHHHHHHCCEECE---SSTT--
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEEECCCC---------------HHHHHHHHHhCCCCEEEECCCCcccc
Confidence 999999999999999999999999999752 14678888889999999999998875
No 83
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.23 E-value=3.5e-10 Score=104.15 Aligned_cols=164 Identities=17% Similarity=0.222 Sum_probs=96.8
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF 127 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (294)
..+.++.|..|+||||++..||.+|. ..|++|+++++|...+.....+..- ...-++.+....
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~--~~g~kV~lV~~D~~R~aa~eQL~~l--------------a~~~gvp~~~~~- 157 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFK--KKGLKVGLVAADTYRPAAYDQLKQL--------------AEKIGVPFYGDP- 157 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEecCCCCCHHHHHHHHHH--------------HHHcCCcEEecC-
Confidence 34445558999999999999999999 8899999999998754322111110 000111111110
Q ss_pred ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH--HHH---HHHHhhcCCCcEEEEecCCchhhHH
Q psy11347 128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE--HLS---LVQYLKGLPDIGAIVVTTPQEVSLL 202 (294)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~--~~~---~~~~l~~~~ad~vliv~~~~~~s~~ 202 (294)
. .......+.+.++.+. + +|+||||+++....+ .+. .+..+ ..+|.+++|+++... .
T Consensus 158 -----~------~~d~~~i~~~al~~~~--~-~DvVIIDTAGr~~~d~~lm~El~~l~~~--~~pdevlLVvda~~g--q 219 (437)
T PRK00771 158 -----D------NKDAVEIAKEGLEKFK--K-ADVIIVDTAGRHALEEDLIEEMKEIKEA--VKPDEVLLVIDATIG--Q 219 (437)
T ss_pred -----C------ccCHHHHHHHHHHHhh--c-CCEEEEECCCcccchHHHHHHHHHHHHH--hcccceeEEEecccc--H
Confidence 0 0112235667777765 4 799999999766422 111 22222 367889999987664 2
Q ss_pred HHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 203 DVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 203 ~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
.+....+.+.+ .++..++|+|+++.. .....+-.+....+.|+.
T Consensus 220 ~av~~a~~F~~-~l~i~gvIlTKlD~~------------a~~G~~ls~~~~~~~Pi~ 263 (437)
T PRK00771 220 QAKNQAKAFHE-AVGIGGIIITKLDGT------------AKGGGALSAVAETGAPIK 263 (437)
T ss_pred HHHHHHHHHHh-cCCCCEEEEecccCC------------CcccHHHHHHHHHCcCEE
Confidence 33333333332 245679999999832 122345555666676665
No 84
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.22 E-value=6.2e-10 Score=99.55 Aligned_cols=165 Identities=16% Similarity=0.172 Sum_probs=95.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
.++++++| ..|+||||++..||..+. ..|++|.++++|++.......+.. .....++.+...
T Consensus 206 ~~ii~lvG-ptGvGKTTt~akLA~~l~--~~g~~V~lItaDtyR~gAveQLk~--------------yae~lgvpv~~~- 267 (407)
T PRK12726 206 HRIISLIG-QTGVGKTTTLVKLGWQLL--KQNRTVGFITTDTFRSGAVEQFQG--------------YADKLDVELIVA- 267 (407)
T ss_pred CeEEEEEC-CCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCccCccHHHHHHH--------------HhhcCCCCEEec-
Confidence 45556665 569999999999999998 789999999999986432222211 111112211111
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCC--ChHHHHHHHHhhc-CCCcEEEEecCCchhhHHH
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGT--SDEHLSLVQYLKG-LPDIGAIVVTTPQEVSLLD 203 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~--~~~~~~~~~~l~~-~~ad~vliv~~~~~~s~~~ 203 (294)
.....+...++.++..++||+|||||++.. ....+..+..+.. ...+.+++|..++ ....+
T Consensus 268 ---------------~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag-~~~~d 331 (407)
T PRK12726 268 ---------------TSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG-MKSAD 331 (407)
T ss_pred ---------------CCHHHHHHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc-ccHHH
Confidence 012245666666642234999999999764 3333333333321 2345556666553 33334
Q ss_pred HHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 204 VRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 204 ~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
+..+++.++. ++.-++|+++.|.. .....+-.+....|+|+.
T Consensus 332 ~~~i~~~f~~--l~i~glI~TKLDET------------~~~G~~Lsv~~~tglPIs 373 (407)
T PRK12726 332 VMTILPKLAE--IPIDGFIITKMDET------------TRIGDLYTVMQETNLPVL 373 (407)
T ss_pred HHHHHHhcCc--CCCCEEEEEcccCC------------CCccHHHHHHHHHCCCEE
Confidence 4455555444 44559999999831 122344455556677666
No 85
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.20 E-value=2.7e-10 Score=106.63 Aligned_cols=204 Identities=19% Similarity=0.181 Sum_probs=107.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC-CCCChhhhcccccc--cccc-ccCCCCcceeccCeEEEec
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI-CGPSMPRMMGLLNE--QVHQ-SASGWSPVFLEENLSVMSI 125 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~-~~~~l~~~lg~~~~--~~~~-~~~~~~~~~~~~~l~~~~~ 125 (294)
|.|+++.++||||++++.|++.|+ ++|++|..+..-. ..++-...-+.+.. ...+ ......+....+.+.+-|.
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~--~~G~~v~~fKp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~~~~~~~nPv~lk~~ 78 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILA--RRGYRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAAGIEPSVHMNPILLKPK 78 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHH--hCCCeEEEECCcccccCccccCCCchhHHHHHHHHHhCCCCchhccCCEEeCcC
Confidence 468899999999999999999999 8999999986631 11110000011111 1111 1111111111112222221
Q ss_pred ----------ccccCC--CCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH-----HHHHHHHhhcCCCc
Q psy11347 126 ----------GFLLNS--PDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE-----HLSLVQYLKGLPDI 188 (294)
Q Consensus 126 ----------~~~~~~--~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~-----~~~~~~~l~~~~ad 188 (294)
+..... ..+............+++.++.+. ..||+||||+++++... ....+.......++
T Consensus 79 ~~~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~l~--~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~ap 156 (475)
T TIGR00313 79 GNFTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEILA--REYDYVVIEGAGSPAEINLLKRDLANMRIAELANAD 156 (475)
T ss_pred CCCcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHHHH--hcCCEEEEECCCCccccccCcCCchHHHHHHHhCCC
Confidence 110000 000000000222345566666665 34999999999865430 01111111114677
Q ss_pred EEEEecCCchh-hHHHHHHHHHHHHhc-CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCc
Q psy11347 189 GAIVVTTPQEV-SLLDVRKEIDFCRKV-NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDP 266 (294)
Q Consensus 189 ~vliv~~~~~~-s~~~~~~~l~~l~~~-~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~ 266 (294)
+|+|++.... .+..+..++..++.. +..+.|+|+|+++. ...+ ..+.++.+.+..|+|++++||+++
T Consensus 157 -VILV~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~-------~~~~---~~~~~~~l~e~~gipvLG~ip~~~ 225 (475)
T TIGR00313 157 -AILVADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRG-------NVDV---LKSGIEKLEELTGIPVLGVLPYDE 225 (475)
T ss_pred -EEEEEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCC-------cHHH---HHHHHHHHHHhhCCCEEEEecCCC
Confidence 6677776654 334555566665543 35788999999873 1111 123445556667999999999875
Q ss_pred hh
Q psy11347 267 LV 268 (294)
Q Consensus 267 ~~ 268 (294)
.+
T Consensus 226 ~l 227 (475)
T TIGR00313 226 NL 227 (475)
T ss_pred cC
Confidence 43
No 86
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=99.19 E-value=2.1e-10 Score=102.88 Aligned_cols=169 Identities=18% Similarity=0.203 Sum_probs=107.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecccc
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFL 128 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (294)
.|.+.+..+|+||||+|..|.++|+ .+|.+|--+..-|+. +.-.. .-...|..
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~--~rg~~VqpfKvGPDY-------------IDP~~------------H~~atG~~ 54 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALR--RRGLKVQPFKVGPDY-------------IDPGY------------HTAATGRP 54 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHH--hcCCcccccccCCCc-------------cCchh------------hhHhhCCc
Confidence 5788899999999999999999999 899998665554432 11000 00011111
Q ss_pred cCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh---------HHHHHHHHhhcCCCcEEEEecCCchh
Q psy11347 129 LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD---------EHLSLVQYLKGLPDIGAIVVTTPQEV 199 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~---------~~~~~~~~l~~~~ad~vliv~~~~~~ 199 (294)
..+.+.+.+ ....++.++.+.. .+.|+.||..--++-+ .+..+...+ .+- ||+|++....
T Consensus 55 srNLD~~mm-----~~~~v~~~f~~~~--~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l---~~P-VvLVid~~~~ 123 (451)
T COG1797 55 SRNLDSWMM-----GEEGVRALFARAA--ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLL---GAP-VVLVVDASGL 123 (451)
T ss_pred cCCCchhhc-----CHHHHHHHHHHhc--CCCCEEEEeeccccccCCCCCcCCCCHHHHHHHh---CCC-EEEEEeCcch
Confidence 112222211 1236667776665 3388998877643321 122233333 555 7888888776
Q ss_pred hHHHHHHHHHHHHhc--CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhh-cCCceeeccCCCchh
Q psy11347 200 SLLDVRKEIDFCRKV--NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAE-LSVPFLGSVPIDPLV 268 (294)
Q Consensus 200 s~~~~~~~l~~l~~~--~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~g~~~l~~Ip~~~~~ 268 (294)
+-.. ..++.-++.. ++++.|||+||+. .++..+.+++.++. .|++++|+||.++.+
T Consensus 124 s~S~-AAiv~G~~~fdp~v~iaGVIlNrVg------------serH~~llr~Ale~~~gv~vlG~lpr~~~l 182 (451)
T COG1797 124 SRSV-AAIVKGFKHFDPDVNIAGVILNRVG------------SERHYELLRDALEEYTGVPVLGYLPRDDDL 182 (451)
T ss_pred hHHH-HHHHHHHHhcCCCCceEEEEEecCC------------CHHHHHHHHHHhhhcCCCcEEEEecCCccc
Confidence 6444 3445555544 5778999999997 34456677777777 689999999999875
No 87
>PRK00784 cobyric acid synthase; Provisional
Probab=99.18 E-value=4.8e-10 Score=105.62 Aligned_cols=203 Identities=14% Similarity=0.127 Sum_probs=109.8
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhc---cccccc--ccc-ccCCCCcceeccC
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMM---GLLNEQ--VHQ-SASGWSPVFLEEN 119 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~l---g~~~~~--~~~-~~~~~~~~~~~~~ 119 (294)
||+.|.|+++.+|||||+++..|+++|+ ++|++|..+.. .+....... |.+..+ ..+ ......+....+.
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~--~~G~~v~~~Kp--v~~~~~~~~~~dg~~~~Da~~l~~~~~~~~~~~~i~P 76 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILA--RRGYRVAPFKA--QNMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDMNP 76 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHH--HCCCeEecccc--hhccccceECCCCCeeHHHHHHHHHhCCCCchhccCC
Confidence 5788999999999999999999999999 89999998854 110000000 111110 000 0111111101111
Q ss_pred eEEEecccccC-----CCC-ccee-----ecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC-----h---HHHHHHH
Q psy11347 120 LSVMSIGFLLN-----SPD-DAVI-----WRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS-----D---EHLSLVQ 180 (294)
Q Consensus 120 l~~~~~~~~~~-----~~~-~~~~-----~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~-----~---~~~~~~~ 180 (294)
+.+.|...... +.. ..+. .........+.+.+..+. ++||++||+..+++. + ....++.
T Consensus 77 ~~~~~~sp~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~--~~~D~vIVEGaGg~~~~~L~~~~~~~~dlak 154 (488)
T PRK00784 77 VLLKPQSDRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDRLA--AEYDVVVVEGAGSPAEINLRDRDIANMGFAE 154 (488)
T ss_pred EEecCCCCCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHHHH--hcCCEEEEECCCCccccCcccCCchhHHHHH
Confidence 11112111100 000 0000 001123335566666655 349999999884332 1 1223333
Q ss_pred HhhcCCCcEEEEecCCchh-hHHHHHHHHHHHHh-cCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCce
Q psy11347 181 YLKGLPDIGAIVVTTPQEV-SLLDVRKEIDFCRK-VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPF 258 (294)
Q Consensus 181 ~l~~~~ad~vliv~~~~~~-s~~~~~~~l~~l~~-~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~ 258 (294)
. ..+. ||+|+..... ++..+..+++.+.. .+.++.|+|+|+++. . ... ..+..+.+.+..++|+
T Consensus 155 ~---l~~P-VILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~------~-~~~---~~~~~~~l~~~~gipv 220 (488)
T PRK00784 155 A---ADAP-VILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRG------D-ISL---LEPGLDWLEELTGVPV 220 (488)
T ss_pred H---cCCC-EEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCC------C-HHH---HHHHHHHHHHhcCCCE
Confidence 3 3555 6777766554 56666666666653 357899999999873 1 111 1223344556679999
Q ss_pred eeccCCCchh
Q psy11347 259 LGSVPIDPLV 268 (294)
Q Consensus 259 l~~Ip~~~~~ 268 (294)
+++||+++.+
T Consensus 221 LG~iP~~~~L 230 (488)
T PRK00784 221 LGVLPYLDDL 230 (488)
T ss_pred EEEcCCCcCC
Confidence 9999998765
No 88
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=99.13 E-value=8.1e-10 Score=108.01 Aligned_cols=178 Identities=18% Similarity=0.223 Sum_probs=104.7
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEec
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSI 125 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (294)
|++.|.+.++..|+|||+++..|+.+|. .+|.+|.++--..+.+ ....... . .+..
T Consensus 1 m~k~l~I~~T~t~~GKT~vslgL~~~L~--~~G~~Vg~fKPi~~~p-------~~~~~~~------------~---~~~~ 56 (684)
T PRK05632 1 MSRSIYLAPTGTGVGLTSVSLGLMRALE--RKGVKVGFFKPIAQPP-------LTMSEVE------------A---LLAS 56 (684)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEeCCcccCC-------CCHHHHH------------H---HHhc
Confidence 5778999999999999999999999999 8999999987433220 0000000 0 0000
Q ss_pred ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH------HHHHHHhhcCCCcEEEEecCCchh
Q psy11347 126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH------LSLVQYLKGLPDIGAIVVTTPQEV 199 (294)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~------~~~~~~l~~~~ad~vliv~~~~~~ 199 (294)
+ . .....+.+.+.++.+. ++||+||||++.+..... ..++..+ .+ -+|+|++++..
T Consensus 57 ~------~------~~~~~~~I~~~~~~l~--~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L---~~-pVILV~~~~~~ 118 (684)
T PRK05632 57 G------Q------LDELLEEIVARYHALA--KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNL---GA-EVVLVSSGGND 118 (684)
T ss_pred c------C------ChHHHHHHHHHHHHhc--cCCCEEEEeCcCCCCcCcccCchHHHHHHHh---CC-CEEEEECCCCC
Confidence 0 0 0111224455555555 349999999996543211 1222222 34 48888888877
Q ss_pred hHHHH----HHHHHHHH-hcCCCeeEEEeccccccCCCCCC-CCccCCCC----------chhHHHHHhhcCCceeeccC
Q psy11347 200 SLLDV----RKEIDFCR-KVNIPIIGVVENMATFVCPKCTK-PSEIFPKD----------SGGAEKMCAELSVPFLGSVP 263 (294)
Q Consensus 200 s~~~~----~~~l~~l~-~~~~~~~~vvvN~~~~~~~~~~~-~~~i~~~~----------~~~~~~~~~~~g~~~l~~Ip 263 (294)
++.++ ....+.+. ..+.+..|+|+|+++.. +. ...+.... .......++..+++++|+||
T Consensus 119 si~d~~~~i~~~~~~l~~~~~~~v~GVIvNr~~v~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP 194 (684)
T PRK05632 119 TPEELAERIELAASSFGGAKNANILGVIINKLNAP----VDEQGRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVP 194 (684)
T ss_pred ChHHHHHHHHHHHHHhccCCCCcEEEEEEECCCCC----HHHHHHHHHHHHhhhccccccchhcchhhhcCCCceEEEcc
Confidence 75443 33444444 45688999999994310 01 00000000 00112334567899999999
Q ss_pred CCchhh
Q psy11347 264 IDPLVT 269 (294)
Q Consensus 264 ~~~~~~ 269 (294)
+++.+.
T Consensus 195 ~d~~L~ 200 (684)
T PRK05632 195 WSPDLI 200 (684)
T ss_pred CccccC
Confidence 998876
No 89
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.12 E-value=2.3e-09 Score=99.76 Aligned_cols=142 Identities=15% Similarity=0.156 Sum_probs=81.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
.++|+|+ |.+|+||||++.+||..+.....+++|.++++|.+..+....+... ...-++.+...
T Consensus 350 G~vIaLV-GPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~y--------------a~iLgv~v~~a- 413 (559)
T PRK12727 350 GGVIALV-GPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSY--------------GRQLGIAVHEA- 413 (559)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHh--------------hcccCceeEec-
Confidence 5667776 6789999999999999887112257999999998653221111100 00011111110
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH--HHHHHHhh--cCCCcEEEEecCCchhhHH
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH--LSLVQYLK--GLPDIGAIVVTTPQEVSLL 202 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~--~~~~~~l~--~~~ad~vliv~~~~~~s~~ 202 (294)
.....+...++.+. + ||+||||+++....+. ...+..+. ....+.+|++.......+
T Consensus 414 ---------------~d~~~L~~aL~~l~--~-~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl- 474 (559)
T PRK12727 414 ---------------DSAESLLDLLERLR--D-YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDL- 474 (559)
T ss_pred ---------------CcHHHHHHHHHHhc--c-CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHH-
Confidence 11125566777664 4 9999999997543221 11111111 124555566665544444
Q ss_pred HHHHHHHHHHhcCCCeeEEEecccc
Q psy11347 203 DVRKEIDFCRKVNIPIIGVVENMAT 227 (294)
Q Consensus 203 ~~~~~l~~l~~~~~~~~~vvvN~~~ 227 (294)
..+++.+... ...++|+|+++
T Consensus 475 --~eii~~f~~~--~~~gvILTKlD 495 (559)
T PRK12727 475 --DEVVRRFAHA--KPQGVVLTKLD 495 (559)
T ss_pred --HHHHHHHHhh--CCeEEEEecCc
Confidence 4455555543 45799999998
No 90
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.10 E-value=2.1e-09 Score=92.20 Aligned_cols=169 Identities=17% Similarity=0.156 Sum_probs=105.1
Q ss_pred CCCCCCCcChHHHHhhhccC--ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccc
Q psy11347 27 GAAKSVDPGIELVKSHLSNV--KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQV 104 (294)
Q Consensus 27 ~~~~~~~~~~~~i~~~~~~~--~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~ 104 (294)
..|++.....+.|+...... ..+|+|+ |-+|+||||+.-.|...|. .+|+||.++-.||+.+-. ...+
T Consensus 29 ~~~~h~~~a~~ll~~l~p~tG~a~viGIT-G~PGaGKSTli~~L~~~l~--~~G~rVaVlAVDPSSp~T-------GGsi 98 (323)
T COG1703 29 RRPDHRALARELLRALYPRTGNAHVIGIT-GVPGAGKSTLIEALGRELR--ERGHRVAVLAVDPSSPFT-------GGSI 98 (323)
T ss_pred CCchhhhHHHHHHHHHhhcCCCCcEEEec-CCCCCchHHHHHHHHHHHH--HCCcEEEEEEECCCCCCC-------Cccc
Confidence 33444433445555444333 4567776 7789999999999999999 999999999999975311 0111
Q ss_pred ccccCCCCcceeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhc
Q psy11347 105 HQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKG 184 (294)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~ 184 (294)
......+..+...+|+.+-|....-. ........++.+..+.... ||+|||.|-+ .+.......
T Consensus 99 LGDRiRM~~~~~~~~vFiRs~~srG~---------lGGlS~at~~~i~~ldAaG-~DvIIVETVG-vGQsev~I~----- 162 (323)
T COG1703 99 LGDRIRMQRLAVDPGVFIRSSPSRGT---------LGGLSRATREAIKLLDAAG-YDVIIVETVG-VGQSEVDIA----- 162 (323)
T ss_pred cccHhhHHhhccCCCeEEeecCCCcc---------chhhhHHHHHHHHHHHhcC-CCEEEEEecC-CCcchhHHh-----
Confidence 12223344444457777765432110 1112224444444444223 9999999994 332223344
Q ss_pred CCCcEEEEecCCch-hhHHHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347 185 LPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNIPIIGVVENMAT 227 (294)
Q Consensus 185 ~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~~~~~vvvN~~~ 227 (294)
..+|.+++++.|.. .+++..+.-+-.+.. -+|+|+.|
T Consensus 163 ~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD------i~vINKaD 200 (323)
T COG1703 163 NMADTFLVVMIPGAGDDLQGIKAGIMEIAD------IIVINKAD 200 (323)
T ss_pred hhcceEEEEecCCCCcHHHHHHhhhhhhhh------eeeEeccC
Confidence 57899999998877 666666665555544 48899987
No 91
>PRK14974 cell division protein FtsY; Provisional
Probab=99.08 E-value=4.9e-09 Score=93.54 Aligned_cols=168 Identities=17% Similarity=0.156 Sum_probs=93.2
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF 127 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (294)
..+.++.|..|+||||++..||.+|. ..|++|+++++|.........+.. ....-++.+++...
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~~V~li~~Dt~R~~a~eqL~~--------------~a~~lgv~v~~~~~ 203 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLK--KNGFSVVIAAGDTFRAGAIEQLEE--------------HAERLGVKVIKHKY 203 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcCcHHHHHHHHH--------------HHHHcCCceecccC
Confidence 34555557999999999999999999 889999999999764322111110 00111222222110
Q ss_pred ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hHHHHHHHHhhc-CCCcEEEEecCCchhhHHHH
Q psy11347 128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DEHLSLVQYLKG-LPDIGAIVVTTPQEVSLLDV 204 (294)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~~~~~~~~l~~-~~ad~vliv~~~~~~s~~~~ 204 (294)
.......+.+.++.....+ ||+||||+++... ...+..+..+.. ...|.+++|.+... . +++
T Consensus 204 ------------g~dp~~v~~~ai~~~~~~~-~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~-g-~d~ 268 (336)
T PRK14974 204 ------------GADPAAVAYDAIEHAKARG-IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALA-G-NDA 268 (336)
T ss_pred ------------CCCHHHHHHHHHHHHHhCC-CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeecccc-c-hhH
Confidence 0011123445555444234 9999999997663 333333332211 25677888887644 2 233
Q ss_pred HHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 205 RKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 205 ~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
....+.+.+ ....-++|+|++|.. . ....+-.+....+.|+.
T Consensus 269 ~~~a~~f~~-~~~~~giIlTKlD~~-----------~-~~G~~ls~~~~~~~Pi~ 310 (336)
T PRK14974 269 VEQAREFNE-AVGIDGVILTKVDAD-----------A-KGGAALSIAYVIGKPIL 310 (336)
T ss_pred HHHHHHHHh-cCCCCEEEEeeecCC-----------C-CccHHHHHHHHHCcCEE
Confidence 333333332 133459999999831 1 12233444445677776
No 92
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.06 E-value=5.1e-09 Score=92.75 Aligned_cols=149 Identities=19% Similarity=0.202 Sum_probs=84.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChh-hhccccccccccccCCCCcceeccCeEEEec
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMP-RMMGLLNEQVHQSASGWSPVFLEENLSVMSI 125 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~-~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (294)
+.+|.|+ |++|+||||++..|+..+. ..|++|.+++.|++.+-.. .+++. ...+......++..+.+.
T Consensus 34 ~~~i~i~-G~~G~GKttl~~~l~~~~~--~~~~~v~~i~~D~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 102 (300)
T TIGR00750 34 AHRVGIT-GTPGAGKSTLLEALGMELR--RRGLKVAVIAVDPSSPFTGGSILGD--------RTRMQRLATDPGAFIRSM 102 (300)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCCCCcchhhhccc--------chhhhhcccCCCceeeec
Confidence 5566555 9999999999999999999 8899999999998753211 11111 111222222233333332
Q ss_pred ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHH
Q psy11347 126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDV 204 (294)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~ 204 (294)
...- .+ ........++++.+... +||+||+|+++ ......... ..+|.++++..+.. ..+...
T Consensus 103 ~~~~-----~~----~~~~~~~~~~~~~l~~~-g~D~viidT~G-~~~~e~~i~-----~~aD~i~vv~~~~~~~el~~~ 166 (300)
T TIGR00750 103 PTRG-----HL----GGLSQATRELILLLDAA-GYDVIIVETVG-VGQSEVDIA-----NMADTFVVVTIPGTGDDLQGI 166 (300)
T ss_pred Cccc-----cc----cchhHHHHHHHHHHHhC-CCCEEEEeCCC-CchhhhHHH-----HhhceEEEEecCCccHHHHHH
Confidence 2110 00 00112445555555433 49999999995 443333333 46787887765442 333333
Q ss_pred HHHHHHHHhcCCCeeEEEeccccc
Q psy11347 205 RKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 205 ~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
. ..+. +.+ ..+|+|+.+.
T Consensus 167 ~---~~l~--~~~-~ivv~NK~Dl 184 (300)
T TIGR00750 167 K---AGLM--EIA-DIYVVNKADG 184 (300)
T ss_pred H---HHHh--hhc-cEEEEEcccc
Confidence 3 2222 222 3689999984
No 93
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.04 E-value=9.4e-09 Score=93.41 Aligned_cols=171 Identities=18% Similarity=0.186 Sum_probs=94.9
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHH-hhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVL-AKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~l-a~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
+.+.++.|.+|+||||++..||..+ . ..|++|+++++|.+.......+.... ...++.+.+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~--~~G~~V~Lit~Dt~R~aA~eQLk~yA--------------e~lgvp~~~~- 285 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFL--HMGKSVSLYTTDNYRIAAIEQLKRYA--------------DTMGMPFYPV- 285 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--hcCCeEEEecccchhhhHHHHHHHHH--------------HhcCCCeeeh-
Confidence 4456666999999999999999865 4 67999999999997643222111100 0011111110
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hHHHHHHHHhhcC----CCcEEEEecCCchhh
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DEHLSLVQYLKGL----PDIGAIVVTTPQEVS 200 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~~~~~~~~l~~~----~ad~vliv~~~~~~s 200 (294)
..+..+.+.+.. ++||+||||+++... ...+..+..+... ....+++|+.++..
T Consensus 286 ------------------~~~~~l~~~l~~-~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~- 345 (432)
T PRK12724 286 ------------------KDIKKFKETLAR-DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS- 345 (432)
T ss_pred ------------------HHHHHHHHHHHh-CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC-
Confidence 012233333332 349999999986442 2233333322211 12246666655433
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee--e---ccCCCchhh
Q psy11347 201 LLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL--G---SVPIDPLVT 269 (294)
Q Consensus 201 ~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l--~---~Ip~~~~~~ 269 (294)
..++..+++.++..++ -++|+.+.|.. . ....+-.+....++|+. + .||+|-..+
T Consensus 346 ~~~~~~~~~~f~~~~~--~glIlTKLDEt-------~-----~~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~A 405 (432)
T PRK12724 346 YHHTLTVLKAYESLNY--RRILLTKLDEA-------D-----FLGSFLELADTYSKSFTYLSVGQEVPFDILNA 405 (432)
T ss_pred HHHHHHHHHHhcCCCC--CEEEEEcccCC-------C-----CccHHHHHHHHHCCCEEEEecCCCCCCCHHHh
Confidence 3344555555555554 49999999831 1 12234455556676665 3 488885543
No 94
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=99.03 E-value=1.8e-09 Score=94.81 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=39.3
Q ss_pred CCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 186 PDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 186 ~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
....+++|+.++..++..+.++++.++..+.+..++|+|++.+
T Consensus 188 ~~t~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~~lvvN~v~~ 230 (284)
T TIGR00345 188 ERTSFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVLP 230 (284)
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHhCCCCCCEEEEeCCcC
Confidence 3466899999999999999999999999999999999999875
No 95
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.02 E-value=1.9e-08 Score=93.84 Aligned_cols=170 Identities=17% Similarity=0.179 Sum_probs=99.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccccc
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLL 129 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 129 (294)
|.|.++.+|+||||++..|+++|+ ++|++|..+..-+.. .++... ........ .+++.
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~--~~G~~V~~fK~g~d~--------~D~~~~-~~~~g~~~----~~ld~------- 59 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALS--RRKLRVQPFKVGPDY--------IDPMFH-TQATGRPS----RNLDS------- 59 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHH--HCCCceeEEccCCCC--------CCHHHH-HHHhCCch----hhCCc-------
Confidence 788999999999999999999999 899999999753211 111100 00000000 11110
Q ss_pred CCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh---------HHHHHHHHhhcCCCcEEEEecCCchhh
Q psy11347 130 NSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD---------EHLSLVQYLKGLPDIGAIVVTTPQEVS 200 (294)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~---------~~~~~~~~l~~~~ad~vliv~~~~~~s 200 (294)
.. .....+.+.+..+. .++|++||+...++.+ ....++..+ .+. ||+|+.... .
T Consensus 60 -----~~-----~~~~~i~~~~~~~~--~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l---~~p-VILV~~~~~-~ 122 (449)
T TIGR00379 60 -----FF-----MSEAQIQECFHRHS--KGTDYSIIEGVRGLYDGISAITDYGSTASVAKAL---DAP-IVLVMNCQR-L 122 (449)
T ss_pred -----cc-----CCHHHHHHHHHHhc--ccCCEEEEecCCccccCCCCCCCCccHHHHHHHh---CCC-EEEEECCch-H
Confidence 00 12336777777765 3499999999855421 123333333 555 677776552 1
Q ss_pred HHHHHHHHHHH--HhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhh
Q psy11347 201 LLDVRKEIDFC--RKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVT 269 (294)
Q Consensus 201 ~~~~~~~l~~l--~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~ 269 (294)
...+..++..+ ...++++.|+|+|+++. . . + .....+.+.+..+++++++||+++.+.
T Consensus 123 ~~t~~al~~~~~~~~~~i~i~GvIlN~v~~------~-~--~--~~~~~~~i~~~~gipvLG~IP~~~~l~ 182 (449)
T TIGR00379 123 SRSAAAIVLGYRSFDPGVKLKGVILNRVGS------E-R--H--LEKLKIAVEPLRGIPILGVIPRQQDLK 182 (449)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEEECCCC------H-H--H--HHHHHHHHHHhCCCCEEEEecCccccC
Confidence 22233332222 23478899999999862 1 1 1 111233344446999999999998774
No 96
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.01 E-value=9.4e-09 Score=91.50 Aligned_cols=148 Identities=17% Similarity=0.116 Sum_probs=87.1
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChh-hhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMP-RMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~-~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
..+..+.|..|+||||++..|+..+. ..|++|.++..|++.+... .++|- ......+...++..+.+.+
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l~--~~g~~v~vi~~Dp~s~~~~gallgd--------~~r~~~~~~~~~~~~r~~~ 125 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHLI--EQGHKVAVLAVDPSSTRTGGSILGD--------KTRMERLSRHPNAFIRPSP 125 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEeCCCccccchhhhch--------HhHHHhhcCCCCeEEEecC
Confidence 34444557799999999999999999 8899999999999753211 11110 0011111122333333221
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecC-CchhhHHHHH
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTT-PQEVSLLDVR 205 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~-~~~~s~~~~~ 205 (294)
. ... .......+.+.++.+.... ||+||||+++..... .... ..+|.+++|+. +...++....
T Consensus 126 ~-----~~~----l~~~a~~~~~~~~~~~~~g-~d~viieT~Gv~qs~-~~i~-----~~aD~vlvv~~p~~gd~iq~~k 189 (332)
T PRK09435 126 S-----SGT----LGGVARKTRETMLLCEAAG-YDVILVETVGVGQSE-TAVA-----GMVDFFLLLQLPGAGDELQGIK 189 (332)
T ss_pred C-----ccc----ccchHHHHHHHHHHHhccC-CCEEEEECCCCccch-hHHH-----HhCCEEEEEecCCchHHHHHHH
Confidence 1 000 0111235566666665334 999999999655332 2222 47999998886 5556776655
Q ss_pred H-HHHHHHhcCCCeeEEEeccccc
Q psy11347 206 K-EIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 206 ~-~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
. .++... .+|+||+|.
T Consensus 190 ~gi~E~aD-------IiVVNKaDl 206 (332)
T PRK09435 190 KGIMELAD-------LIVINKADG 206 (332)
T ss_pred hhhhhhhh-------eEEeehhcc
Confidence 4 222221 589999983
No 97
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.01 E-value=4.2e-09 Score=97.92 Aligned_cols=167 Identities=14% Similarity=0.142 Sum_probs=99.0
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEE--E
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSV--M 123 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~--~ 123 (294)
.++.+.|.++.+|+||||+|..|+.+|+ .+ |..+-+.+.. +... +.+.. .
T Consensus 237 ~~~~i~Iagt~Tg~GKT~vt~~L~~al~--~~---v~~fK~GpD~-------------id~~----------p~~~~~~~ 288 (476)
T PRK06278 237 KPKGIILLATGSESGKTFLTTSIAGKLR--GK---VFVAKIGPDV-------------RDIV----------PSLYLLRE 288 (476)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHH--hC---eEEEcCCCCh-------------hhcC----------Ccceeccc
Confidence 3678999999999999999999999999 54 7666643211 0000 00000 0
Q ss_pred ecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH---------HHHHHHHhhcCCCcEEEEec
Q psy11347 124 SIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE---------HLSLVQYLKGLPDIGAIVVT 194 (294)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~---------~~~~~~~l~~~~ad~vliv~ 194 (294)
|.........+...+ . ...+.++.+... ++|++||+...++.+. ...++..+ .+. ||+|+
T Consensus 289 ~~sp~~a~n~~~d~~--~----~~~~~~~~~~~~-~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l---~~P-VILV~ 357 (476)
T PRK06278 289 KMTKYNSIKIGDRGW--S----DVEEFLEFVKNS-DYDYYIIEGVMGAFTGALNKKNPYSGAEIAKAL---GFP-VYIVS 357 (476)
T ss_pred ccCChHHHhhcCCcc--c----CHHHHHHHHHhc-CCCEEEEECCCCcccccCCCCccccHHHHHHHh---CCC-EEEEE
Confidence 111000000000000 0 112223333222 3899999998665332 12333333 455 88899
Q ss_pred CCchhhHHHHHHH----HHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccC
Q psy11347 195 TPQEVSLLDVRKE----IDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVP 263 (294)
Q Consensus 195 ~~~~~s~~~~~~~----l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip 263 (294)
+....+++.+... .+.++..++++.|+|+|++.. .++.+.++++++..|+|++|++|
T Consensus 358 ~~~~g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~------------~~~~~~~~~~le~~gvpVLG~~~ 418 (476)
T PRK06278 358 SCSKSGIEGAFVESMAYYSLLKKMGVKVEGIILNKVYN------------MEIFEKVKKIAENSNINLIGVGK 418 (476)
T ss_pred cCCCChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCc------------HHHHHHHHHHHHhcCCCEEEecc
Confidence 8888886555543 455666788999999999872 11345667888889999999944
No 98
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=99.01 E-value=1.3e-08 Score=84.38 Aligned_cols=167 Identities=17% Similarity=0.166 Sum_probs=94.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF 127 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (294)
++|+++ |..||||||.++-||.++. ..+++|.++-+|.........+..- -..-++.+.....
T Consensus 2 ~vi~lv-GptGvGKTTt~aKLAa~~~--~~~~~v~lis~D~~R~ga~eQL~~~--------------a~~l~vp~~~~~~ 64 (196)
T PF00448_consen 2 KVIALV-GPTGVGKTTTIAKLAARLK--LKGKKVALISADTYRIGAVEQLKTY--------------AEILGVPFYVART 64 (196)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHH--HTT--EEEEEESTSSTHHHHHHHHH--------------HHHHTEEEEESST
T ss_pred EEEEEE-CCCCCchHhHHHHHHHHHh--hccccceeecCCCCCccHHHHHHHH--------------HHHhccccchhhc
Confidence 445555 7889999999999999999 6699999999998653322221110 0112333332210
Q ss_pred ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH--HHHHHHHhhc-CCCcEEEEecCCchhhHHHH
Q psy11347 128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE--HLSLVQYLKG-LPDIGAIVVTTPQEVSLLDV 204 (294)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~--~~~~~~~l~~-~~ad~vliv~~~~~~s~~~~ 204 (294)
.......+++.++....++ ||+||||+++....+ .+.-+..+.. ...+.+++|...+... ...
T Consensus 65 ------------~~~~~~~~~~~l~~~~~~~-~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~-~~~ 130 (196)
T PF00448_consen 65 ------------ESDPAEIAREALEKFRKKG-YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ-EDL 130 (196)
T ss_dssp ------------TSCHHHHHHHHHHHHHHTT-SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG-HHH
T ss_pred ------------chhhHHHHHHHHHHHhhcC-CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh-HHH
Confidence 1112235666777665334 999999999654321 1112211111 2456677777666543 344
Q ss_pred HHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 205 RKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 205 ~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+....+..++. ++|+.+.|. .. ....+-.+....+.|+.
T Consensus 131 ~~~~~~~~~~~~~--~lIlTKlDe-----------t~-~~G~~l~~~~~~~~Pi~ 171 (196)
T PF00448_consen 131 EQALAFYEAFGID--GLILTKLDE-----------TA-RLGALLSLAYESGLPIS 171 (196)
T ss_dssp HHHHHHHHHSSTC--EEEEESTTS-----------SS-TTHHHHHHHHHHTSEEE
T ss_pred HHHHHHhhcccCc--eEEEEeecC-----------CC-CcccceeHHHHhCCCeE
Confidence 4555555555555 899999983 11 22334455556777766
No 99
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.98 E-value=1.2e-08 Score=94.28 Aligned_cols=164 Identities=17% Similarity=0.186 Sum_probs=88.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
.++++|+ |.+|+||||++..||..++....|++|+++|+|++.......+.. |.. .-++.+....
T Consensus 221 ~~~i~~v-GptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~-----------~a~---~~~vp~~~~~ 285 (424)
T PRK05703 221 GGVVALV-GPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKT-----------YAK---IMGIPVEVVY 285 (424)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHH-----------HHH---HhCCceEccC
Confidence 3456666 679999999999999987511468999999999875221111100 000 0111111110
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh--HHHHHHHHhhc-C-CCcEEEEecCCchhhHH
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD--EHLSLVQYLKG-L-PDIGAIVVTTPQEVSLL 202 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~--~~~~~~~~l~~-~-~ad~vliv~~~~~~s~~ 202 (294)
....+...+..+. + ||+||||+++.... .....+..+.. . .-..+++|+..+ ....
T Consensus 286 ----------------~~~~l~~~l~~~~--~-~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~-~~~~ 345 (424)
T PRK05703 286 ----------------DPKELAKALEQLR--D-CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSAT-TKYE 345 (424)
T ss_pred ----------------CHHhHHHHHHHhC--C-CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECC-CCHH
Confidence 0114455566554 4 99999999965432 22333333322 1 112334444332 2334
Q ss_pred HHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 203 DVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 203 ~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
.+..+++.++..++ .++|+++++.. .. ...+-.+....++|+.
T Consensus 346 ~l~~~~~~f~~~~~--~~vI~TKlDet-------~~-----~G~i~~~~~~~~lPv~ 388 (424)
T PRK05703 346 DLKDIYKHFSRLPL--DGLIFTKLDET-------SS-----LGSILSLLIESGLPIS 388 (424)
T ss_pred HHHHHHHHhCCCCC--CEEEEeccccc-------cc-----ccHHHHHHHHHCCCEE
Confidence 55555556655554 58999999832 11 2234455556677776
No 100
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.94 E-value=1.8e-08 Score=90.66 Aligned_cols=150 Identities=15% Similarity=0.183 Sum_probs=92.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
.+.+....|--|+||||.|.-||.+|. ++|++|+++-+|.+.+..-..|.. +-..-++.+.+.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lk--k~~~kvllVaaD~~RpAA~eQL~~--------------La~q~~v~~f~~~ 162 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLK--KKGKKVLLVAADTYRPAAIEQLKQ--------------LAEQVGVPFFGSG 162 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHH--HcCCceEEEecccCChHHHHHHHH--------------HHHHcCCceecCC
Confidence 345555557788999999999999999 899999999999987543222211 1111233333321
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hHHHHHHHHhhc-CCCcEEEEecCCchhhHHH
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DEHLSLVQYLKG-LPDIGAIVVTTPQEVSLLD 203 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~~~~~~~~l~~-~~ad~vliv~~~~~~s~~~ 203 (294)
. .....+..++.++..+... ||+|||||.+.+. ...+.-+..+.. ...|.+++|++.... ++
T Consensus 163 ~------------~~~Pv~Iak~al~~ak~~~-~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G--Qd 227 (451)
T COG0541 163 T------------EKDPVEIAKAALEKAKEEG-YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG--QD 227 (451)
T ss_pred C------------CCCHHHHHHHHHHHHHHcC-CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc--hH
Confidence 0 1112236788888888544 9999999997653 322222222221 467889999976431 22
Q ss_pred HHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 204 VRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 204 ~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+...-+.+.+ .+.+-|+|+++.|.
T Consensus 228 A~~~A~aF~e-~l~itGvIlTKlDG 251 (451)
T COG0541 228 AVNTAKAFNE-ALGITGVILTKLDG 251 (451)
T ss_pred HHHHHHHHhh-hcCCceEEEEcccC
Confidence 2222233321 23456999999985
No 101
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.94 E-value=4.4e-08 Score=89.03 Aligned_cols=170 Identities=15% Similarity=0.210 Sum_probs=94.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhc--CCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKS--NESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~--~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
.+.++.|++|+||||+++.||..+... ..|++|+++++|.........+.. |.+. -++.+...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~-----------~a~~---lgvpv~~~- 239 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQT-----------YGDI---MGIPVKAI- 239 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHH-----------Hhhc---CCcceEee-
Confidence 455556888999999999999988711 247899999999865332222211 0000 01111100
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH--HHHHHHhhc-CCCc-EEEEecCCchhhHH
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH--LSLVQYLKG-LPDI-GAIVVTTPQEVSLL 202 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~--~~~~~~l~~-~~ad-~vliv~~~~~~s~~ 202 (294)
.....+...+..+. + ||+||||+++...... +.-+..+.. ...+ .+++|..++.. ..
T Consensus 240 ---------------~~~~~l~~~L~~~~--~-~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~-~~ 300 (388)
T PRK12723 240 ---------------ESFKDLKEEITQSK--D-FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK-TS 300 (388)
T ss_pred ---------------CcHHHHHHHHHHhC--C-CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC-HH
Confidence 01124555555553 4 9999999997654222 222222222 1223 57777766554 33
Q ss_pred HHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee--e---ccCCCc
Q psy11347 203 DVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL--G---SVPIDP 266 (294)
Q Consensus 203 ~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l--~---~Ip~~~ 266 (294)
++..++..+...+ .-++|+++.|.. . ....+-.+....++|+. + .||.|-
T Consensus 301 ~~~~~~~~~~~~~--~~~~I~TKlDet-------~-----~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl 355 (388)
T PRK12723 301 DVKEIFHQFSPFS--YKTVIFTKLDET-------T-----CVGNLISLIYEMRKEVSYVTDGQIVPHNI 355 (388)
T ss_pred HHHHHHHHhcCCC--CCEEEEEeccCC-------C-----cchHHHHHHHHHCCCEEEEeCCCCChhhh
Confidence 4445555555444 459999999831 1 12334455556666665 2 366653
No 102
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.93 E-value=1.9e-09 Score=91.16 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=86.5
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChh-hhccccccccccccCCCCcceeccCeEEEe
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMP-RMMGLLNEQVHQSASGWSPVFLEENLSVMS 124 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~-~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (294)
...+|+|+ |.+|+||||+.-.|+..+. ..|++|.++-.||..+-.. .+| .....+..+...+++++-+
T Consensus 28 ~a~~iGiT-G~PGaGKSTli~~l~~~~~--~~g~~VaVlAVDPSSp~tGGAlL--------GDRiRM~~~~~d~~vfIRS 96 (266)
T PF03308_consen 28 RAHVIGIT-GPPGAGKSTLIDALIRELR--ERGKRVAVLAVDPSSPFTGGALL--------GDRIRMQELSRDPGVFIRS 96 (266)
T ss_dssp -SEEEEEE-E-TTSSHHHHHHHHHHHHH--HTT--EEEEEE-GGGGCC---SS----------GGGCHHHHTSTTEEEEE
T ss_pred CceEEEee-CCCCCcHHHHHHHHHHHHh--hcCCceEEEEECCCCCCCCCccc--------ccHHHhcCcCCCCCEEEee
Confidence 35666665 7889999999999999999 8999999999999753211 112 2222333334457777765
Q ss_pred cccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHH
Q psy11347 125 IGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLD 203 (294)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~ 203 (294)
....- . .........+.+.-+.... ||+|||.|-+ .+....... ..+|.++++..|.. .+++.
T Consensus 97 ~atRG-----~----lGGls~~t~~~v~ll~aaG-~D~IiiETVG-vGQsE~~I~-----~~aD~~v~v~~Pg~GD~iQ~ 160 (266)
T PF03308_consen 97 MATRG-----S----LGGLSRATRDAVRLLDAAG-FDVIIIETVG-VGQSEVDIA-----DMADTVVLVLVPGLGDEIQA 160 (266)
T ss_dssp E---S-----S----HHHHHHHHHHHHHHHHHTT--SEEEEEEES-SSTHHHHHH-----TTSSEEEEEEESSTCCCCCT
T ss_pred cCcCC-----C----CCCccHhHHHHHHHHHHcC-CCEEEEeCCC-CCccHHHHH-----HhcCeEEEEecCCCccHHHH
Confidence 43110 0 0111223344444443223 9999999994 443344454 68999999998877 66666
Q ss_pred HHHHHHHHHhcCCCeeEEEecccc
Q psy11347 204 VRKEIDFCRKVNIPIIGVVENMAT 227 (294)
Q Consensus 204 ~~~~l~~l~~~~~~~~~vvvN~~~ 227 (294)
.+.-+-.+.. .+|+|+.|
T Consensus 161 ~KaGimEiaD------i~vVNKaD 178 (266)
T PF03308_consen 161 IKAGIMEIAD------IFVVNKAD 178 (266)
T ss_dssp B-TTHHHH-S------EEEEE--S
T ss_pred Hhhhhhhhcc------EEEEeCCC
Confidence 6655555543 58999987
No 103
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.90 E-value=8.8e-08 Score=83.00 Aligned_cols=173 Identities=18% Similarity=0.189 Sum_probs=99.1
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF 127 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (294)
..++++ |++|+||||+...|+..+. ..+.+|.++++|.+.......+. ......++.+...
T Consensus 76 ~~i~~~-G~~g~GKTtl~~~l~~~l~--~~~~~v~~i~~D~~ri~~~~ql~--------------~~~~~~~~~~~~~-- 136 (270)
T PRK06731 76 QTIALI-GPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQ--------------DYVKTIGFEVIAV-- 136 (270)
T ss_pred CEEEEE-CCCCCcHHHHHHHHHHHHH--HcCCeEEEEecCCCCHHHHHHHH--------------HHhhhcCceEEec--
Confidence 455555 7799999999999999999 78999999999976422111110 0000112222111
Q ss_pred ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hHHHHHHHHhh-cCCCcEEEEecCCchhhHHHH
Q psy11347 128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DEHLSLVQYLK-GLPDIGAIVVTTPQEVSLLDV 204 (294)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~~~~~~~~l~-~~~ad~vliv~~~~~~s~~~~ 204 (294)
.....+.+.++.++...+||+||||+++... ...+.-+..+. ....+.+++|..++... +++
T Consensus 137 --------------~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~ 201 (270)
T PRK06731 137 --------------RDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDM 201 (270)
T ss_pred --------------CCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHH
Confidence 0112455666666432349999999997763 33333232221 12456677777654322 344
Q ss_pred HHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee--e---ccCCCchh
Q psy11347 205 RKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL--G---SVPIDPLV 268 (294)
Q Consensus 205 ~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l--~---~Ip~~~~~ 268 (294)
...++.+.. ...-++|+.+.|.. . ....+-.+....+.|+. + .+|+|-..
T Consensus 202 ~~~~~~f~~--~~~~~~I~TKlDet-------~-----~~G~~l~~~~~~~~Pi~~it~Gq~vp~di~~ 256 (270)
T PRK06731 202 IEIITNFKD--IHIDGIVFTKFDET-------A-----SSGELLKIPAVSSAPIVLMTDGQDVKKNIHI 256 (270)
T ss_pred HHHHHHhCC--CCCCEEEEEeecCC-------C-----CccHHHHHHHHHCcCEEEEeCCCCCCcchhh
Confidence 445555655 45569999999831 1 12234444455666665 2 47766444
No 104
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.90 E-value=4e-08 Score=90.47 Aligned_cols=172 Identities=15% Similarity=0.150 Sum_probs=101.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
|+.+.|.+...|+||||++..|+.+|. .+|.+|-.+-..+..-+...+ ........ .+++.
T Consensus 1 m~~~~i~~~~s~~GKT~vt~gl~~~l~--~~g~~v~~~K~Gpd~iD~~~~---------~~~~g~~~----~nld~---- 61 (433)
T PRK13896 1 MKGFVLGGTSSGVGKTVATLATIRALE--DAGYAVQPAKAGPDFIDPSHH---------EAVAGRPS----RTLDP---- 61 (433)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHH--HCCCeeEEEeeCCCCCCHHHH---------HHHhCCCc----ccCCh----
Confidence 457999999999999999999999999 899999888764432111000 00000000 12210
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH-HHHHHHhhcCCCcEEEEecCCchhhHHHH-
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH-LSLVQYLKGLPDIGAIVVTTPQEVSLLDV- 204 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~-~~~~~~l~~~~ad~vliv~~~~~~s~~~~- 204 (294)
++. . .+.++..+.. .. +|++||+...++.+.. ..+...+...... ||+|++....+...+
T Consensus 62 -~~~---------~---~~~i~~~~~~---~~-~d~~vIEG~gGl~dg~~~s~adla~~l~~P-viLVv~~~~g~~s~aa 123 (433)
T PRK13896 62 -WLS---------G---EDGMRRNYYR---GE-GDICVVEGVMGLYDGDVSSTAMVAEALDLP-VVLVVDAKAGMESVAA 123 (433)
T ss_pred -hhC---------C---HHHHHHHHHh---hc-CCEEEEECCCccccCCCCCHHHHHHHHCCC-EEEEEcCcccHHHHHH
Confidence 000 0 1234443332 23 8999999987663321 1122222222455 788888777754444
Q ss_pred -HHHHHHHHh---cCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchh
Q psy11347 205 -RKEIDFCRK---VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLV 268 (294)
Q Consensus 205 -~~~l~~l~~---~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~ 268 (294)
...+..+.. .++++.|+|+|++.+ .++.+.+++..+. ++++++.||.++.+
T Consensus 124 ~l~g~~~~~~~~~~~~~i~GvIlN~~~~------------~~h~~~l~~~~~~-~i~vlG~lP~~~~~ 178 (433)
T PRK13896 124 TALGFRAYADRIGRDIDVAGVIAQRAHG------------GRHADGIRDALPD-ELTYFGRIPPRDDL 178 (433)
T ss_pred HHHHHHHHHHhccCCCcEEEEEEECCCc------------HHHHHHHHHhhhh-cCceeEecccCCCC
Confidence 333333333 478999999999862 1112333444444 79999999998776
No 105
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=98.83 E-value=3.1e-08 Score=91.99 Aligned_cols=85 Identities=24% Similarity=0.364 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee----------eccCCCchh
Q psy11347 199 VSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL----------GSVPIDPLV 268 (294)
Q Consensus 199 ~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l----------~~Ip~~~~~ 268 (294)
..+.++.+.++.+++.+++ ..|.+|+++.. ...+ .+.+++++++.|+++. |-+|.++.+
T Consensus 356 sGl~NL~RHIenvr~FGvP-vVVAINKFd~D-----Te~E-----i~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aV 424 (557)
T PRK13505 356 KGFANLERHIENIRKFGVP-VVVAINKFVTD-----TDAE-----IAALKELCEELGVEVALSEVWAKGGEGGVELAEKV 424 (557)
T ss_pred HHHHHHHHHHHHHHHcCCC-EEEEEeCCCCC-----CHHH-----HHHHHHHHHHcCCCEEEecccccCCcchHHHHHHH
Confidence 3557788899999999999 45899999841 1112 3467889999999999 899999999
Q ss_pred hhhccCCcc----cccCCCHHHHHHHHhhC
Q psy11347 269 TRHCDEGTS----AIDTPSACVDAIQQIVQ 294 (294)
Q Consensus 269 ~~a~~~g~~----v~~~~s~~~~~~~~la~ 294 (294)
.+++.++.+ ++..+.++.+.++.+|+
T Consensus 425 veA~~~~~s~f~~lY~~d~sl~eKIe~IAk 454 (557)
T PRK13505 425 VELIEEGESNFKPLYDDEDSLEEKIEKIAT 454 (557)
T ss_pred HHHHhcCCCCCceecCCCCcHHHHHHHHHH
Confidence 988887654 33378888888888874
No 106
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.81 E-value=1.7e-07 Score=91.15 Aligned_cols=170 Identities=17% Similarity=0.147 Sum_probs=97.9
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCC-CcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNES-VDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g-~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
++|+| -|.+|+||||++..||..+.. ..| ++|.++++|.........+... ....++.+...
T Consensus 186 ~Vi~l-VGpnGvGKTTTiaKLA~~~~~-~~G~kkV~lit~Dt~RigA~eQL~~~--------------a~~~gvpv~~~- 248 (767)
T PRK14723 186 GVLAL-VGPTGVGKTTTTAKLAARCVA-REGADQLALLTTDSFRIGALEQLRIY--------------GRILGVPVHAV- 248 (767)
T ss_pred eEEEE-ECCCCCcHHHHHHHHHhhHHH-HcCCCeEEEecCcccchHHHHHHHHH--------------HHhCCCCcccc-
Confidence 44555 588999999999999998851 455 6999999997653322111110 00011111000
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCC--ChHHHHHHHHhhc-CCCcEEEEecCCchhhHHH
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGT--SDEHLSLVQYLKG-LPDIGAIVVTTPQEVSLLD 203 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~--~~~~~~~~~~l~~-~~ad~vliv~~~~~~s~~~ 203 (294)
.....+.+.++.++ + ||+|||||++-. .......+..+.. ...+.+++|++.+. ..+.
T Consensus 249 ---------------~~~~~l~~al~~~~--~-~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~-~~~~ 309 (767)
T PRK14723 249 ---------------KDAADLRFALAALG--D-KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAS-HGDT 309 (767)
T ss_pred ---------------CCHHHHHHHHHHhc--C-CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCC-cHHH
Confidence 01225677777765 5 899999999743 2223333333321 23556788876653 3445
Q ss_pred HHHHHHHHHhc-CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee--e---ccCCC
Q psy11347 204 VRKEIDFCRKV-NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL--G---SVPID 265 (294)
Q Consensus 204 ~~~~l~~l~~~-~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l--~---~Ip~~ 265 (294)
+..+++.++.. +.+.-++|++|.|. .. ....+-.+....++|+. + .||+|
T Consensus 310 l~~i~~~f~~~~~~~i~glIlTKLDE-------t~-----~~G~iL~i~~~~~lPI~yit~GQ~VPdD 365 (767)
T PRK14723 310 LNEVVHAYRHGAGEDVDGCIITKLDE-------AT-----HLGPALDTVIRHRLPVHYVSTGQKVPEH 365 (767)
T ss_pred HHHHHHHHhhcccCCCCEEEEeccCC-------CC-----CccHHHHHHHHHCCCeEEEecCCCChhh
Confidence 55666666544 34566999999983 11 12234455556666655 2 46655
No 107
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.73 E-value=5.3e-08 Score=84.70 Aligned_cols=124 Identities=14% Similarity=0.131 Sum_probs=70.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccccc-ccCCCCcce-eccCeEEEe
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQ-SASGWSPVF-LEENLSVMS 124 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~-~~~~~~~~~-~~~~l~~~~ 124 (294)
|++|.|++.| |+||||++.+|+..|+ .+| +|.+|+.|..... .....+... ...+..... ..+.-.++
T Consensus 1 M~~i~i~G~~-gSGKTTLi~~Li~~L~--~~G-~V~~IKhd~h~~~-----~~~g~Ds~~~~~aGa~~v~~~s~~~~~~- 70 (274)
T PRK14493 1 MKVLSIVGYK-ATGKTTLVERLVDRLS--GRG-RVGTVKHMDTERL-----NPDGTDTGRHFDAGADVVYGLTDGEWVA- 70 (274)
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHHHH--hCC-CEEEEEEcCCCcC-----CCCCCCcHHHHHCCCcEEEEecCCeEEE-
Confidence 5678888775 9999999999999999 889 8999999985310 000000000 000000000 00110110
Q ss_pred cccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCc-EEEEecCCchhhH
Q psy11347 125 IGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDI-GAIVVTTPQEVSL 201 (294)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad-~vliv~~~~~~s~ 201 (294)
... ...+.+++..+. .+ ||+||+|+.....-+-+... .+ ..+| .++++..++...+
T Consensus 71 -------------~~~---~~~l~~~l~~l~-~~-~D~vlVEG~k~~~~pki~v~-~~--~~~~~~~l~p~~~s~~d~ 127 (274)
T PRK14493 71 -------------SGR---DRSLDDALDDLA-PG-MDYAVVEGFKDSRLPKVVLG-DM--DADSDVVARAPTAADLDT 127 (274)
T ss_pred -------------Eec---CCCHHHHHHhhC-cC-CCEEEEECCCCCCCCEEEEE-ec--ccCCcEEEecCCCCccCH
Confidence 000 114556666665 23 99999999976542111111 11 3566 7889998888773
No 108
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.55 E-value=2.9e-06 Score=76.69 Aligned_cols=173 Identities=19% Similarity=0.215 Sum_probs=91.8
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCC-CcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNES-VDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF 127 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g-~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (294)
.+.++.|..|+||||++..||..+. ...| .+|.++.+|....+-...+.. |... -++.+....
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~-----------~a~~---~gv~~~~~~- 201 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRI-----------FGKI---LGVPVHAVK- 201 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHH-----------HHHH---cCCceEecC-
Confidence 3555668999999999999999876 1345 699999999864321111110 0000 111111100
Q ss_pred ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCC--ChHHHHHHHHhhc-CCCcEEEEecCCchhhHHHH
Q psy11347 128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGT--SDEHLSLVQYLKG-LPDIGAIVVTTPQEVSLLDV 204 (294)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~--~~~~~~~~~~l~~-~~ad~vliv~~~~~~s~~~~ 204 (294)
....+...+..+. + +|+||||+++.. .......+..+.. .....+++|+.++. ....+
T Consensus 202 ---------------~~~~l~~~l~~l~--~-~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts-~~~~l 262 (374)
T PRK14722 202 ---------------DGGDLQLALAELR--N-KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATS-HGDTL 262 (374)
T ss_pred ---------------CcccHHHHHHHhc--C-CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCcc-ChHHH
Confidence 0013445555554 4 899999999644 2333344444422 12344566665443 22333
Q ss_pred HHHHHHHHhcC-------CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee--e---ccCCCchh
Q psy11347 205 RKEIDFCRKVN-------IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL--G---SVPIDPLV 268 (294)
Q Consensus 205 ~~~l~~l~~~~-------~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l--~---~Ip~~~~~ 268 (294)
...+..+.... .+.-++|+++.|. ... ...+-.+....++|+. + .||+|-..
T Consensus 263 ~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE-------t~~-----~G~~l~~~~~~~lPi~yvt~Gq~VPedl~~ 326 (374)
T PRK14722 263 NEVVQAYRSAAGQPKAALPDLAGCILTKLDE-------ASN-----LGGVLDTVIRYKLPVHYVSTGQKVPENLYV 326 (374)
T ss_pred HHHHHHHHHhhcccccccCCCCEEEEecccc-------CCC-----ccHHHHHHHHHCcCeEEEecCCCCCccccc
Confidence 33344443321 1356999999983 221 2234444445566655 2 47877444
No 109
>KOG0781|consensus
Probab=98.55 E-value=1.3e-06 Score=79.21 Aligned_cols=168 Identities=18% Similarity=0.171 Sum_probs=106.7
Q ss_pred HHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceec
Q psy11347 38 LVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLE 117 (294)
Q Consensus 38 ~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~ 117 (294)
.|.+..++..+-+..+.|-+||||||-.+-+|..|- +.+.||++.-||+-..+.-..|+.+.+.+..-..
T Consensus 368 dI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLl--qNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~-------- 437 (587)
T KOG0781|consen 368 DIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLL--QNKFRVLIAACDTFRSGAVEQLRTHVERLSALHG-------- 437 (587)
T ss_pred HHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHH--hCCceEEEEeccchhhhHHHHHHHHHHHHHHhcc--------
Confidence 333333333444444447799999999999999999 8999999999998766655555554432211100
Q ss_pred cCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh--HHH-HHHHHhhcCCCcEEEEec
Q psy11347 118 ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD--EHL-SLVQYLKGLPDIGAIVVT 194 (294)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~--~~~-~~~~~l~~~~ad~vliv~ 194 (294)
.-+.+...|. ++......++.++..+. ++||+|+|||.+.+.+ ..+ ++...+....-|.|+.|.
T Consensus 438 ~~v~lfekGY------------gkd~a~vak~AI~~a~~-~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vg 504 (587)
T KOG0781|consen 438 TMVELFEKGY------------GKDAAGVAKEAIQEARN-QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVG 504 (587)
T ss_pred chhHHHhhhc------------CCChHHHHHHHHHHHHh-cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEeh
Confidence 0001111110 12234477888888874 4599999999976632 222 222333346789999988
Q ss_pred CCc--hhhHHHHHHHHHHHHhcCCC--eeEEEeccccc
Q psy11347 195 TPQ--EVSLLDVRKEIDFCRKVNIP--IIGVVENMATF 228 (294)
Q Consensus 195 ~~~--~~s~~~~~~~l~~l~~~~~~--~~~vvvN~~~~ 228 (294)
++= -.++..+..+-+.+..+.-+ +-++|+.+++.
T Consensus 505 ealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dt 542 (587)
T KOG0781|consen 505 EALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDT 542 (587)
T ss_pred hhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccc
Confidence 663 36777777777777766522 56999999874
No 110
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.55 E-value=1.8e-07 Score=82.12 Aligned_cols=41 Identities=27% Similarity=0.323 Sum_probs=34.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCC-C-CcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-S-VDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g-~~VlliD~D~~~ 90 (294)
.++|+|+ |.+|+||||++..||.+++ .. | ++|.++++|++.
T Consensus 194 ~~vi~~v-GptGvGKTTt~~kLa~~~~--~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 194 GGVIALV-GPTGVGKTTTLAKLAARFV--LEHGNKKVALITTDTYR 236 (282)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHH--HHcCCCeEEEEECCccc
Confidence 3456666 6799999999999999998 55 4 899999999865
No 111
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=98.55 E-value=7.4e-08 Score=88.28 Aligned_cols=206 Identities=15% Similarity=0.146 Sum_probs=120.0
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc------cccccCCCCcceeccC--
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ------VHQSASGWSPVFLEEN-- 119 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~------~~~~~~~~~~~~~~~~-- 119 (294)
+.|.+.++-+.+|||++++.|.+.++ .+|++|.-+-. |+.+++.+.-.+..+ +........+....+.
T Consensus 2 ~~iMv~GT~S~~GKS~~~aglcRi~~--~~G~~V~PFK~--QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvL 77 (486)
T COG1492 2 KAIMVQGTTSDAGKSFLVAGLCRILA--RRGYRVAPFKS--QNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVL 77 (486)
T ss_pred CccEEEeccCCcchhhhhhhhhHHHH--hcCCccCCCch--hhcccccEECCCCcEEehhhhHHHHHcCCCCccccCCEE
Confidence 46889999999999999999999999 99999977644 444444443222221 1111222222222232
Q ss_pred --------eEEEecccccCCCCcce--eecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC-----hHHHHHHHHhhc
Q psy11347 120 --------LSVMSIGFLLNSPDDAV--IWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS-----DEHLSLVQYLKG 184 (294)
Q Consensus 120 --------l~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~-----~~~~~~~~~l~~ 184 (294)
..++-.+...-...... ..........+.+.++.+. +.||+|++...++-. +..+.-+.....
T Consensus 78 LKP~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~--~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~ 155 (486)
T COG1492 78 LKPCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLD--REYDVVVIEGAGSPAEINLRDRDIANMGVAEI 155 (486)
T ss_pred EeecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHhh--hcccEEEEecCCChhhcCcccccccceeeehh
Confidence 33333332222211110 0011122335566677666 449999999985321 111111111111
Q ss_pred CCCcEEEEecCCch-hhHHHHHHHHHHHHhc-CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeecc
Q psy11347 185 LPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV-NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSV 262 (294)
Q Consensus 185 ~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~-~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~I 262 (294)
..+. +|+|.+-+. ..+.+..-++..+... ...+.|+|+|+++ ....+. ...++.+.+..|.++++++
T Consensus 156 ~dap-vILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFR-------Gd~~ll---~~gik~Le~~tg~~vlGv~ 224 (486)
T COG1492 156 ADAP-VILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFR-------GDESLL---DPGLKWLEELTGVPVLGVL 224 (486)
T ss_pred cCCC-EEEEEeecccceeeeeeehheecCHhHhcceeEEEEeeeC-------CCHHHH---hhHHHHHHHhhCCeeEeec
Confidence 2455 678887776 4555566666666443 3456799999987 444444 4567777788999999999
Q ss_pred CCCchhhh
Q psy11347 263 PIDPLVTR 270 (294)
Q Consensus 263 p~~~~~~~ 270 (294)
|+.....+
T Consensus 225 P~~~~~~~ 232 (486)
T COG1492 225 PYLKDALR 232 (486)
T ss_pred cccccccC
Confidence 99866653
No 112
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.52 E-value=3.4e-06 Score=75.99 Aligned_cols=144 Identities=16% Similarity=0.219 Sum_probs=86.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF 127 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (294)
+.+..+-|..||||||..+-||..+.-....++|.+|-+|...-+....|... ..+.-+|.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Y-----------------a~im~vp~-- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTY-----------------ADIMGVPL-- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHH-----------------HHHhCCce--
Confidence 44445558899999999999999877225678999999997653322222110 01110110
Q ss_pred ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCC--ChHHHHHHHHhhcCC-CcEEEEecCCchhhHHHH
Q psy11347 128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGT--SDEHLSLVQYLKGLP-DIGAIVVTTPQEVSLLDV 204 (294)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~--~~~~~~~~~~l~~~~-ad~vliv~~~~~~s~~~~ 204 (294)
......+.+...+..+. + ||+|+|||.+.. +...++-+.++.... ...+.+|...+ ...+++
T Consensus 264 -----------~vv~~~~el~~ai~~l~--~-~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat-~K~~dl 328 (407)
T COG1419 264 -----------EVVYSPKELAEAIEALR--D-CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSAT-TKYEDL 328 (407)
T ss_pred -----------EEecCHHHHHHHHHHhh--c-CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecC-cchHHH
Confidence 11112336667777765 5 999999999543 333344444443322 23344444333 344677
Q ss_pred HHHHHHHHhcCCCeeEEEecccc
Q psy11347 205 RKEIDFCRKVNIPIIGVVENMAT 227 (294)
Q Consensus 205 ~~~l~~l~~~~~~~~~vvvN~~~ 227 (294)
..+++.++..++. ++|+.+.|
T Consensus 329 kei~~~f~~~~i~--~~I~TKlD 349 (407)
T COG1419 329 KEIIKQFSLFPID--GLIFTKLD 349 (407)
T ss_pred HHHHHHhccCCcc--eeEEEccc
Confidence 7788888777666 89999987
No 113
>KOG0780|consensus
Probab=98.52 E-value=3.7e-07 Score=80.81 Aligned_cols=146 Identities=11% Similarity=0.077 Sum_probs=88.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
+.+|.|+ |-.|+||||.+.-||.++. ++|++++++-+|.-.+.....+..... ..++.+.-++
T Consensus 101 psVimfV-GLqG~GKTTtc~KlA~y~k--kkG~K~~LvcaDTFRagAfDQLkqnA~--------------k~~iP~ygsy 163 (483)
T KOG0780|consen 101 PSVIMFV-GLQGSGKTTTCTKLAYYYK--KKGYKVALVCADTFRAGAFDQLKQNAT--------------KARVPFYGSY 163 (483)
T ss_pred CcEEEEE-eccCCCcceeHHHHHHHHH--hcCCceeEEeecccccchHHHHHHHhH--------------hhCCeeEecc
Confidence 4455555 6678999999999999999 999999999999865433222221110 1122222211
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh------HHHHHHHHhhcCCCcEEEEecCCchhh
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD------EHLSLVQYLKGLPDIGAIVVTTPQEVS 200 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~------~~~~~~~~l~~~~ad~vliv~~~~~~s 200 (294)
. .........+-+++.+.++ ||+||+||.+.... +.....+++ .-|.||+|.+....-
T Consensus 164 t------------e~dpv~ia~egv~~fKke~-fdvIIvDTSGRh~qe~sLfeEM~~v~~ai---~Pd~vi~VmDasiGQ 227 (483)
T KOG0780|consen 164 T------------EADPVKIASEGVDRFKKEN-FDVIIVDTSGRHKQEASLFEEMKQVSKAI---KPDEIIFVMDASIGQ 227 (483)
T ss_pred c------------ccchHHHHHHHHHHHHhcC-CcEEEEeCCCchhhhHHHHHHHHHHHhhc---CCCeEEEEEeccccH
Confidence 1 1112336677788887544 99999999975532 222333333 678899999876522
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 201 LLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 201 ~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
.+....+.+. ..+.+-++|+++.|.
T Consensus 228 --aae~Qa~aFk-~~vdvg~vIlTKlDG 252 (483)
T KOG0780|consen 228 --AAEAQARAFK-ETVDVGAVILTKLDG 252 (483)
T ss_pred --hHHHHHHHHH-HhhccceEEEEeccc
Confidence 1111111111 123456888999874
No 114
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.51 E-value=2.8e-06 Score=79.23 Aligned_cols=42 Identities=29% Similarity=0.298 Sum_probs=33.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCC-CcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNES-VDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g-~~VlliD~D~~~ 90 (294)
+.+++|+ |.+|+||||++..||..+. ...| ++|.++++|.+.
T Consensus 256 g~Vi~Lv-GpnGvGKTTTiaKLA~~~~-~~~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 256 GGVFALM-GPTGVGKTTTTAKLAARCV-MRHGASKVALLTTDSYR 298 (484)
T ss_pred CcEEEEE-CCCCccHHHHHHHHHHHHH-HhcCCCeEEEEeCCccc
Confidence 3455555 8899999999999999885 1344 589999999854
No 115
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.39 E-value=5.6e-06 Score=72.57 Aligned_cols=166 Identities=16% Similarity=0.190 Sum_probs=96.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
+-+|.|+ |-+|+||||...-||.+|. +.|++|++.-+|.-....-..+ ..|-+ .-++.++...
T Consensus 139 p~Vil~v-GVNG~GKTTTIaKLA~~l~--~~g~~VllaA~DTFRAaAiEQL-----------~~w~e---r~gv~vI~~~ 201 (340)
T COG0552 139 PFVILFV-GVNGVGKTTTIAKLAKYLK--QQGKSVLLAAGDTFRAAAIEQL-----------EVWGE---RLGVPVISGK 201 (340)
T ss_pred cEEEEEE-ecCCCchHhHHHHHHHHHH--HCCCeEEEEecchHHHHHHHHH-----------HHHHH---HhCCeEEccC
Confidence 4455555 7799999999999999999 8999999999986432211111 11111 1345554421
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH--HHHHHHhhc--C-----CCcEEEEecCC-
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH--LSLVQYLKG--L-----PDIGAIVVTTP- 196 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~--~~~~~~l~~--~-----~ad~vliv~~~- 196 (294)
. +........+.++..+..+ ||++|+||.+.+.+.. +.-+..+.. . ....++++.+.
T Consensus 202 -~-----------G~DpAaVafDAi~~Akar~-~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAt 268 (340)
T COG0552 202 -E-----------GADPAAVAFDAIQAAKARG-IDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDAT 268 (340)
T ss_pred -C-----------CCCcHHHHHHHHHHHHHcC-CCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcc
Confidence 1 1122236667777776444 9999999998764322 222222111 1 22336666544
Q ss_pred -chhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 197 -QEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 197 -~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
+..+++.+..+-+... +-|+|+.+.+.. .+..+ +-.+...+++|+.
T Consensus 269 tGqnal~QAk~F~eav~-----l~GiIlTKlDgt-----AKGG~-------il~I~~~l~~PI~ 315 (340)
T COG0552 269 TGQNALSQAKIFNEAVG-----LDGIILTKLDGT-----AKGGI-------ILSIAYELGIPIK 315 (340)
T ss_pred cChhHHHHHHHHHHhcC-----CceEEEEecccC-----CCcce-------eeeHHHHhCCCEE
Confidence 3355555555544432 459999998842 22222 2344556666666
No 116
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.23 E-value=1.4e-06 Score=69.48 Aligned_cols=119 Identities=24% Similarity=0.278 Sum_probs=76.0
Q ss_pred cChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCc
Q psy11347 34 PGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSP 113 (294)
Q Consensus 34 ~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~ 113 (294)
.+..+-|..+......+..+.|-+|+||||||..|...|. ..|++|.++|.|.-..+|..-+|...++..++....-+
T Consensus 9 ~v~~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~--~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvae 86 (197)
T COG0529 9 SVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLF--AKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAE 86 (197)
T ss_pred ccCHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH--HcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHH
Confidence 3445556666555555666668899999999999999999 99999999999988778777777776644333222211
Q ss_pred ---ceeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCC
Q psy11347 114 ---VFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTP 168 (294)
Q Consensus 114 ---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p 168 (294)
+....++-.+-+-.++. ....+..++++.. +.|=-|.||+|
T Consensus 87 vAkll~daG~iviva~ISP~----------r~~R~~aR~~~~~----~~FiEVyV~~p 130 (197)
T COG0529 87 VAKLLADAGLIVIVAFISPY----------REDRQMARELLGE----GEFIEVYVDTP 130 (197)
T ss_pred HHHHHHHCCeEEEEEeeCcc----------HHHHHHHHHHhCc----CceEEEEeCCC
Confidence 22235555543322211 1112244455443 23667899999
No 117
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.12 E-value=2.1e-05 Score=68.62 Aligned_cols=93 Identities=19% Similarity=0.116 Sum_probs=63.6
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i 239 (294)
|++.|+|+|+... ....+...+ ..+|.+++|++++......+..+++.+...+.+. .+++|+++.. .
T Consensus 64 ~~i~liDtPG~~~-f~~~~~~~l--~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~-iivvNK~D~~------~--- 130 (268)
T cd04170 64 HKINLIDTPGYAD-FVGETRAAL--RAADAALVVVSAQSGVEVGTEKLWEFADEAGIPR-IIFINKMDRE------R--- 130 (268)
T ss_pred EEEEEEECcCHHH-HHHHHHHHH--HHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECCccC------C---
Confidence 8999999997543 112233444 5799999999988766667777788888778774 4799999842 1
Q ss_pred CCCCchhHHHHHhhcCCcee-eccCCCc
Q psy11347 240 FPKDSGGAEKMCAELSVPFL-GSVPIDP 266 (294)
Q Consensus 240 ~~~~~~~~~~~~~~~g~~~l-~~Ip~~~ 266 (294)
.++....+++.+.++.+++ ..+|...
T Consensus 131 -~~~~~~~~~l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 131 -ADFDKTLAALQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred -CCHHHHHHHHHHHhCCCeEEEEecccC
Confidence 1234456677677777666 4677554
No 118
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=0.00021 Score=65.81 Aligned_cols=145 Identities=19% Similarity=0.164 Sum_probs=76.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
+.+++++ |.+|+||||+..-||..+.....+.+|.++-.|....+....+.. +-.+ -++.+...
T Consensus 191 g~vi~lv-GpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~-----------~a~i---lGvp~~~v- 254 (420)
T PRK14721 191 GGVYALI-GPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRI-----------YGKL---LGVSVRSI- 254 (420)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHH-----------HHHH---cCCceecC-
Confidence 3455555 899999999999999865411234688888777643211111000 0000 01111100
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hHHHHHHHHhhc-CCCcEEEEecCCchhhHHH
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DEHLSLVQYLKG-LPDIGAIVVTTPQEVSLLD 203 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~~~~~~~~l~~-~~ad~vliv~~~~~~s~~~ 203 (294)
.....+...+..+. + +|+|+||+++-.. ......+..+.. .....+++|+..+ ..-+.
T Consensus 255 ---------------~~~~dl~~al~~l~--~-~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at-~~~~~ 315 (420)
T PRK14721 255 ---------------KDIADLQLMLHELR--G-KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNAT-SSGDT 315 (420)
T ss_pred ---------------CCHHHHHHHHHHhc--C-CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCC-CCHHH
Confidence 01113445555554 4 9999999974332 222333333322 1233466666554 23344
Q ss_pred HHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 204 VRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 204 ~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+..++..+...+ .-++|+++.|.
T Consensus 316 ~~~~~~~f~~~~--~~~~I~TKlDE 338 (420)
T PRK14721 316 LDEVISAYQGHG--IHGCIITKVDE 338 (420)
T ss_pred HHHHHHHhcCCC--CCEEEEEeeeC
Confidence 555555555544 45999999983
No 119
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.08 E-value=3.9e-05 Score=63.58 Aligned_cols=66 Identities=24% Similarity=0.320 Sum_probs=48.8
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.++++|+|+.. ...-.+...+ ..+|.+++|++....-.......+..+.+.+.+.+.+++|++|.
T Consensus 65 ~~i~~iDtPG~~-~~~~~~~~~~--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~ 130 (195)
T cd01884 65 RHYAHVDCPGHA-DYIKNMITGA--AQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADM 130 (195)
T ss_pred eEEEEEECcCHH-HHHHHHHHHh--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCC
Confidence 788999999642 2223344444 68999999998876555667788888888888766688999984
No 120
>KOG1532|consensus
Probab=98.07 E-value=1.4e-05 Score=68.04 Aligned_cols=166 Identities=17% Similarity=0.177 Sum_probs=90.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
.+++.++-|=-|+||||+..-|-..++ ..+.+..+|.+||.-.++..-.+++..+.......+.++..- |-|
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~--~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG------PNG 89 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLH--AKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG------PNG 89 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHh--hccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC------CCc
Confidence 455666668889999999999999999 888889999999976565555555544333222222222111 112
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH-----HHHHHHhhcCCCcEEEEecCCchh--
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH-----LSLVQYLKGLPDIGAIVVTTPQEV-- 199 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~-----~~~~~~l~~~~ad~vliv~~~~~~-- 199 (294)
.......-.. .....+..+++... +.+|++|||+|+-+.... .-+...+....-..|+-+++....
T Consensus 90 gI~TsLNLF~-----tk~dqv~~~iek~~--~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~ 162 (366)
T KOG1532|consen 90 GIVTSLNLFA-----TKFDQVIELIEKRA--EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTS 162 (366)
T ss_pred chhhhHHHHH-----HHHHHHHHHHHHhh--cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCC
Confidence 1111111000 01113446666655 449999999995321000 001122222344444444433221
Q ss_pred ---hHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 200 ---SLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 200 ---s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
=++.+.-....+-+..+++ .+++|+.+.
T Consensus 163 p~tFMSNMlYAcSilyktklp~-ivvfNK~Dv 193 (366)
T KOG1532|consen 163 PTTFMSNMLYACSILYKTKLPF-IVVFNKTDV 193 (366)
T ss_pred chhHHHHHHHHHHHHHhccCCe-EEEEecccc
Confidence 1233444455556677785 488999874
No 121
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=98.04 E-value=0.00019 Score=71.44 Aligned_cols=89 Identities=18% Similarity=0.147 Sum_probs=63.9
Q ss_pred CccEEEEcCCCCCCh------HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCC
Q psy11347 159 GLEYLLIDTPPGTSD------EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPK 232 (294)
Q Consensus 159 ~yd~IiiD~p~~~~~------~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~ 232 (294)
.+|++||++.+|+.. ....++..+ ... +|+|+......++.+...++.++..|+++.++|+|...
T Consensus 184 ~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l---~lP-vILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~~~----- 254 (817)
T PLN02974 184 GRVLALVETAGGVASPGPSGTLQCDLYRPL---RLP-AILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHG----- 254 (817)
T ss_pred cCCeEEEECCCcccccCCCCCCHHHHHHHh---CCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeCCc-----
Confidence 389999999977631 123344333 344 89999999999999999999999999999999999632
Q ss_pred CCCCCccCCCCchhHHHHHhhcCCceee--ccCCC
Q psy11347 233 CTKPSEIFPKDSGGAEKMCAELSVPFLG--SVPID 265 (294)
Q Consensus 233 ~~~~~~i~~~~~~~~~~~~~~~g~~~l~--~Ip~~ 265 (294)
. .+...++++++. ++|++. .+|.+
T Consensus 255 -------~-~N~~~l~~~~~~-~~pv~~lp~~p~~ 280 (817)
T PLN02974 255 -------L-SNEKALLSYLSN-RVPVFVLPPVPED 280 (817)
T ss_pred -------c-chHHHHHHHHhc-CCcEEeCCCCCCC
Confidence 1 233445555543 788874 45544
No 122
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.01 E-value=3.7e-06 Score=69.30 Aligned_cols=138 Identities=20% Similarity=0.178 Sum_probs=77.1
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF 127 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (294)
..+.++-|.+|+||||+...|...-. ..+.++.+-+-+.....--..++.....+++.++.+.....-+|+.+-|...
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v 105 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV 105 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH
Confidence 34455558999999999999998887 6777776655444322111223334445667777777766666666544321
Q ss_pred ccCCCCcceeecCccchHHHHHHHHhhccC-------------------------CCccEEEEcCCCCCC-----hHHHH
Q psy11347 128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWG-------------------------NGLEYLLIDTPPGTS-----DEHLS 177 (294)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-------------------------~~yd~IiiD~p~~~~-----~~~~~ 177 (294)
.-. ...+..+...++|+.+... -+++++++|.|.+.. .+++.
T Consensus 106 ~~~--------~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~ 177 (240)
T COG1126 106 KKL--------SKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD 177 (240)
T ss_pred cCC--------CHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHH
Confidence 100 0111112222333322211 148999999995443 34456
Q ss_pred HHHHhhcCCCcEEEEecCC
Q psy11347 178 LVQYLKGLPDIGAIVVTTP 196 (294)
Q Consensus 178 ~~~~l~~~~ad~vliv~~~ 196 (294)
++..+.....+ .++||+.
T Consensus 178 vm~~LA~eGmT-MivVTHE 195 (240)
T COG1126 178 VMKDLAEEGMT-MIIVTHE 195 (240)
T ss_pred HHHHHHHcCCe-EEEEech
Confidence 66666544544 5666654
No 123
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.00 E-value=0.00014 Score=63.35 Aligned_cols=91 Identities=21% Similarity=0.126 Sum_probs=57.3
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i 239 (294)
+.+.++|+|+... ........+ ..+|.+|+|++.....-.....+++.....+.+ ..+++|+.+..
T Consensus 71 ~~i~liDTPG~~d-f~~~~~~~l--~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P-~iivvNK~D~~---------- 136 (267)
T cd04169 71 CVINLLDTPGHED-FSEDTYRTL--TAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIP-IITFINKLDRE---------- 136 (267)
T ss_pred EEEEEEECCCchH-HHHHHHHHH--HHCCEEEEEEECCCCccHHHHHHHHHHHhcCCC-EEEEEECCccC----------
Confidence 8999999996432 112233344 578999999887654334456667777777777 55889998731
Q ss_pred CCCCchhHHHHHhhcCCceee-ccCC
Q psy11347 240 FPKDSGGAEKMCAELSVPFLG-SVPI 264 (294)
Q Consensus 240 ~~~~~~~~~~~~~~~g~~~l~-~Ip~ 264 (294)
...+...++++.+.++.+.+. .+|-
T Consensus 137 ~a~~~~~~~~l~~~l~~~~~~~~~Pi 162 (267)
T cd04169 137 GRDPLELLDEIEEELGIDCTPLTWPI 162 (267)
T ss_pred CCCHHHHHHHHHHHHCCCceeEEecc
Confidence 111233456777777766653 4443
No 124
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.98 E-value=3.4e-05 Score=64.79 Aligned_cols=75 Identities=23% Similarity=0.207 Sum_probs=57.4
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCC---hhhhccccccccccccCCCCcceeccCeEE
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPS---MPRMMGLLNEQVHQSASGWSPVFLEENLSV 122 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~---l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~ 122 (294)
....+..+.|++|+||||+-..++.... ..+..|.+-+.|....+ +..+.......++++...++.+...+|+.+
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l 106 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVEL 106 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHh
Confidence 3455667779999999999999999999 88888888887766543 334445555678888888888877777764
No 125
>KOG0635|consensus
Probab=97.95 E-value=2.3e-05 Score=60.80 Aligned_cols=76 Identities=21% Similarity=0.233 Sum_probs=60.3
Q ss_pred CCCcChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccccccc
Q psy11347 31 SVDPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA 108 (294)
Q Consensus 31 ~~~~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~ 108 (294)
++.++...-|.++-+....+..+.|-+|+||||+|++|..+|- ++|+-...+|.|....++..-|++..++..++.
T Consensus 14 h~~~v~k~eRq~l~~qkGcviWiTGLSgSGKStlACaL~q~L~--qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENI 89 (207)
T KOG0635|consen 14 HESSVTKEERQKLLKQKGCVIWITGLSGSGKSTLACALSQALL--QRGKLTYILDGDNVRHGLNKDLGFKAEDRNENI 89 (207)
T ss_pred ecCCccHHHHHHHhcCCCcEEEEeccCCCCchhHHHHHHHHHH--hcCceEEEecCcccccccccccCcchhhhhhhH
Confidence 4455666667777776666666778899999999999999999 899999999999888888888887766544443
No 126
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.94 E-value=0.0001 Score=64.23 Aligned_cols=92 Identities=17% Similarity=0.082 Sum_probs=60.2
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i 239 (294)
+.+.++|+|+... ........+ ..+|.+++|++..........++++.+...+.+.+ +++|+.+.. .
T Consensus 64 ~~i~liDTPG~~d-f~~~~~~~l--~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~------~--- 130 (270)
T cd01886 64 HRINIIDTPGHVD-FTIEVERSL--RVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMDRT------G--- 130 (270)
T ss_pred EEEEEEECCCcHH-HHHHHHHHH--HHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCC------C---
Confidence 8899999996432 223344444 57899999998876555566788888888888865 899999831 1
Q ss_pred CCCCchhHHHHHhhcCCcee-eccCCC
Q psy11347 240 FPKDSGGAEKMCAELSVPFL-GSVPID 265 (294)
Q Consensus 240 ~~~~~~~~~~~~~~~g~~~l-~~Ip~~ 265 (294)
.+.....+++.+.++.... ..+|-.
T Consensus 131 -a~~~~~~~~l~~~l~~~~~~~~~Pis 156 (270)
T cd01886 131 -ADFFRVVEQIREKLGANPVPLQLPIG 156 (270)
T ss_pred -CCHHHHHHHHHHHhCCCceEEEeccc
Confidence 1223345666666665433 345543
No 127
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.90 E-value=2.2e-06 Score=73.19 Aligned_cols=45 Identities=29% Similarity=0.384 Sum_probs=30.6
Q ss_pred ecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccc
Q psy11347 54 SGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLL 100 (294)
Q Consensus 54 s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~ 100 (294)
-|..|+||||++..+..++. ..|++|.+|.+||....+......+
T Consensus 2 iGpaGSGKTT~~~~~~~~~~--~~~~~~~~vNLDPa~~~~~y~~~iD 46 (238)
T PF03029_consen 2 IGPAGSGKTTFCKGLSEWLE--SNGRDVYIVNLDPAVENLPYPPDID 46 (238)
T ss_dssp EESTTSSHHHHHHHHHHHHT--TT-S-EEEEE--TT-S--SS--SEE
T ss_pred CCCCCCCHHHHHHHHHHHHH--hccCCceEEEcchHhcccccCchHH
Confidence 36789999999999999999 8999999999999765544433333
No 128
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.87 E-value=0.00015 Score=65.31 Aligned_cols=43 Identities=33% Similarity=0.415 Sum_probs=35.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPS 92 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~ 92 (294)
..+++++ |.-++||||++.-||--+- .+|++|.++|+|+.+++
T Consensus 73 ~~~vmvv-G~vDSGKSTLt~~LaN~~l--~rG~~v~iiDaDvGQ~e 115 (398)
T COG1341 73 VGVVMVV-GPVDSGKSTLTTYLANKLL--ARGRKVAIIDADVGQSE 115 (398)
T ss_pred CcEEEEE-CCcCcCHHHHHHHHHHHHh--hcCceEEEEeCCCCCcc
Confidence 4455555 5556999999999999999 89999999999997754
No 129
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.84 E-value=0.00024 Score=60.80 Aligned_cols=86 Identities=23% Similarity=0.116 Sum_probs=58.9
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i 239 (294)
+.+.++|+|+... ........+ ..+|.+++|++...........+++.+++.+.+. .+++|+.+. .
T Consensus 64 ~~i~liDTPG~~~-f~~~~~~~l--~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~-iivvNK~D~------~---- 129 (237)
T cd04168 64 TKVNLIDTPGHMD-FIAEVERSL--SVLDGAILVISAVEGVQAQTRILWRLLRKLNIPT-IIFVNKIDR------A---- 129 (237)
T ss_pred EEEEEEeCCCccc-hHHHHHHHH--HHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECccc------c----
Confidence 8899999996542 222333444 5789999998877654556777888888888885 489999983 1
Q ss_pred CCCCchhHHHHHhhcCCcee
Q psy11347 240 FPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 240 ~~~~~~~~~~~~~~~g~~~l 259 (294)
..++...++++.+.++..++
T Consensus 130 ~a~~~~~~~~i~~~~~~~~~ 149 (237)
T cd04168 130 GADLEKVYQEIKEKLSSDIV 149 (237)
T ss_pred CCCHHHHHHHHHHHHCCCeE
Confidence 11235567777777776555
No 130
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.83 E-value=0.00014 Score=57.70 Aligned_cols=38 Identities=26% Similarity=0.293 Sum_probs=34.1
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
.++.|++|+||||++..++..+. ..+.+|++++.+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA--TKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH--hcCCEEEEEECCcch
Confidence 46778999999999999999999 789999999998654
No 131
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.83 E-value=4.3e-05 Score=64.63 Aligned_cols=79 Identities=22% Similarity=0.249 Sum_probs=62.4
Q ss_pred ccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEE
Q psy11347 44 SNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVM 123 (294)
Q Consensus 44 ~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (294)
......+.++-|.+|+||||+-..+-+.+. ....++++-+-|...-+ ..-++....|+.+....++.....+|+.++
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~~~d-~~~LRr~IGYviQqigLFPh~Tv~eNIa~V 99 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDISDLD-PVELRRKIGYVIQQIGLFPHLTVAENIATV 99 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecccCC-HHHHHHhhhhhhhhcccCCCccHHHHHHhh
Confidence 334567788889999999999999999999 88889999888876433 344667777888888888888888888776
Q ss_pred ec
Q psy11347 124 SI 125 (294)
Q Consensus 124 ~~ 125 (294)
|.
T Consensus 100 P~ 101 (309)
T COG1125 100 PK 101 (309)
T ss_pred hh
Confidence 63
No 132
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.80 E-value=0.00016 Score=58.44 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=33.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
+..+..+.|..|+||||+...|...|. .+|++|..|-.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~--~~g~~vg~Ik~~~~ 45 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC--ARGIRPGLIKHTHH 45 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh--hcCCeEEEEEEcCC
Confidence 333444557899999999999999999 88999999976543
No 133
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.79 E-value=0.00013 Score=59.18 Aligned_cols=75 Identities=20% Similarity=0.108 Sum_probs=52.3
Q ss_pred cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCC--hhhhccccccccccccCCCCcceeccCeE
Q psy11347 45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPS--MPRMMGLLNEQVHQSASGWSPVFLEENLS 121 (294)
Q Consensus 45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~--l~~~lg~~~~~~~~~~~~~~~~~~~~~l~ 121 (294)
-....+.|+.|.+|+||||+...+..... ....++.+.+.|...-. ---++......+++....+.+....+|+.
T Consensus 25 i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA 101 (223)
T COG2884 25 IPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVA 101 (223)
T ss_pred ecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhh
Confidence 34677899999999999999999999999 88899999999875311 11123344444555555555544444444
No 134
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.77 E-value=0.00011 Score=57.59 Aligned_cols=40 Identities=25% Similarity=0.230 Sum_probs=30.4
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEE-EEecCCCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVG-VLDLDICG 90 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vl-liD~D~~~ 90 (294)
++|.|+|.| |+||||++..|...|. .+|++|. +.+.|..+
T Consensus 1 pvv~VvG~~-~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~g~ 41 (140)
T PF03205_consen 1 PVVQVVGPK-NSGKTTLIRKLINELK--RRGYRVAVIKHTDHGQ 41 (140)
T ss_dssp -EEEEEEST-TSSHHHHHHHHHHHHH--HTT--EEEEEE-STTS
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHh--HcCCceEEEEEccCCC
Confidence 467777665 8999999999999999 8999999 77777733
No 135
>KOG1533|consensus
Probab=97.76 E-value=1.9e-05 Score=65.73 Aligned_cols=49 Identities=29% Similarity=0.391 Sum_probs=40.5
Q ss_pred EEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc
Q psy11347 52 VLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE 102 (294)
Q Consensus 52 v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~ 102 (294)
++-|..|+||||-+..+...|+ ..|.+|.+|.+||.+-++..-+..+..
T Consensus 6 vVIGPPgSGKsTYc~g~~~fls--~~gr~~~vVNLDPaNd~~~Y~~~v~I~ 54 (290)
T KOG1533|consen 6 VVIGPPGSGKSTYCNGMSQFLS--AIGRPVAVVNLDPANDNLPYECAVDIR 54 (290)
T ss_pred EEEcCCCCCccchhhhHHHHHH--HhCCceEEEecCCcccCCCCCCcccHH
Confidence 4458899999999999999999 999999999999977665555555444
No 136
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.73 E-value=0.00045 Score=56.19 Aligned_cols=65 Identities=25% Similarity=0.224 Sum_probs=42.9
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
++++++|+|+... ........+ ..+|.++++++............+..+...+.+ +.+++|+.+.
T Consensus 62 ~~~~liDtpG~~~-~~~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-i~iv~nK~D~ 126 (189)
T cd00881 62 RRVNFIDTPGHED-FSSEVIRGL--SVSDGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKIDR 126 (189)
T ss_pred EEEEEEeCCCcHH-HHHHHHHHH--HhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCC-eEEEEECCCC
Confidence 7899999996432 212233333 579999999887654444455566666665555 6799999884
No 137
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.71 E-value=0.00056 Score=57.25 Aligned_cols=66 Identities=17% Similarity=0.139 Sum_probs=43.6
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
..+.|+|+|+.. .....+...+ ..+|.+|+|++...............+...+.+.+-+|+|+++.
T Consensus 77 ~~~~liDTpG~~-~~~~~~~~~~--~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~ 142 (208)
T cd04166 77 RKFIIADTPGHE-QYTRNMVTGA--STADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDL 142 (208)
T ss_pred ceEEEEECCcHH-HHHHHHHHhh--hhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhc
Confidence 689999999632 2112233334 57999999998876444445555556666666656678999984
No 138
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.69 E-value=0.00037 Score=55.58 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=35.5
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
|++++.|++. .++||||+.-.|...|. .+|++|.+|-....
T Consensus 1 m~~Il~ivG~-k~SGKTTLie~lv~~L~--~~G~rVa~iKH~hh 41 (161)
T COG1763 1 MMKILGIVGY-KNSGKTTLIEKLVRKLK--ARGYRVATVKHAHH 41 (161)
T ss_pred CCcEEEEEec-CCCChhhHHHHHHHHHH--hCCcEEEEEEecCC
Confidence 6788888855 55999999999999999 99999999977654
No 139
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.69 E-value=0.00021 Score=56.97 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=31.5
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
+.|+ |..|+||||++..|+..|. .+|++|.++..|..
T Consensus 2 i~i~-G~~gsGKTtl~~~l~~~l~--~~G~~V~viK~~~~ 38 (155)
T TIGR00176 2 LQIV-GPKNSGKTTLIERLVKALK--ARGYRVATIKHDHH 38 (155)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccc
Confidence 3444 6679999999999999999 88999999988753
No 140
>PLN03127 Elongation factor Tu; Provisional
Probab=97.66 E-value=0.00075 Score=63.09 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=49.0
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.++++|+|+.. .....+...+ ..+|.+++|++....-.......+..+...+++.+-+++|++|.
T Consensus 124 ~~i~~iDtPGh~-~f~~~~~~g~--~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDl 189 (447)
T PLN03127 124 RHYAHVDCPGHA-DYVKNMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDV 189 (447)
T ss_pred eEEEEEECCCcc-chHHHHHHHH--hhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeecc
Confidence 678999999653 2333333334 46999999999876555667788888888898876788999984
No 141
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.64 E-value=0.00025 Score=60.03 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=33.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
|++|.|++. .|+||||++..|+..|. .+|++|.++..+
T Consensus 1 m~vi~ivG~-~gsGKTtl~~~l~~~L~--~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGF-KDSGKTTLIEKILKNLK--ERGYRVATAKHT 38 (229)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHHH--hCCCeEEEEEec
Confidence 567888876 59999999999999999 899999999754
No 142
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=97.64 E-value=0.00038 Score=62.54 Aligned_cols=192 Identities=15% Similarity=0.230 Sum_probs=98.0
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCC--CcceeccCeEEE
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGW--SPVFLEENLSVM 123 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~--~~~~~~~~l~~~ 123 (294)
||+.+.+.....|+|||+++.+|++.|. ++|.+|.++--=. ...+.+........... ......+.+.+-
T Consensus 1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~--~k~~kva~~kPI~------~~~~~~~~~~~e~~~~~~~~~l~~~~~~~~~ 72 (354)
T COG0857 1 MSRTLLLIPTETGVGKTSISLGLLRALE--QKGLKVAYFKPIG------TRTGKDADDLTEEDIRATSSSLTYAEPLVLS 72 (354)
T ss_pred CcceEEEeccCCCccHHHHHHHHHHHHH--HcCceeEEEeccc------cccCCccchhHHHHHHHhhhhcccCcccchh
Confidence 6889999999999999999999999999 9999999974311 11111111111100000 000111111110
Q ss_pred ecccccCCCCcceeecCccchHHHHHHHHhhccC-CCccEEEEcCC-C------CCChHHHHHHHHhhcCCCcEEEEecC
Q psy11347 124 SIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWG-NGLEYLLIDTP-P------GTSDEHLSLVQYLKGLPDIGAIVVTT 195 (294)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~yd~IiiD~p-~------~~~~~~~~~~~~l~~~~ad~vliv~~ 195 (294)
..-... ........+.+++...... ..+|+++++.- + ..+-. .....-+ .+. ++++..
T Consensus 73 ~ae~L~---------~~~~~d~l~e~i~~~y~e~~~~~~~vv~~g~~~~~~~~~~~~ln-~~iA~~L---na~-~vlva~ 138 (354)
T COG0857 73 FAEVLL---------STGQDDVLLEEILANYAELAKDADVVVVEGDVPTREGPYALDLN-YEIAKNL---NAA-AVLVAR 138 (354)
T ss_pred hHHHHh---------ccccchHHHHHHHHHHHHHhccCceEEeccceeccccCcccccc-HHHHhhc---Ccc-hhhccc
Confidence 000000 1111111333333333211 12566666543 1 11111 1122222 344 455555
Q ss_pred CchhhHHHHHHHHHHH----HhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchh
Q psy11347 196 PQEVSLLDVRKEIDFC----RKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLV 268 (294)
Q Consensus 196 ~~~~s~~~~~~~l~~l----~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~ 268 (294)
....+.......++.. ...+..+.|+|+|+... .......+...++.+..+..+++.+|.+.-+
T Consensus 139 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~gVv~N~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ll 206 (354)
T COG0857 139 ALLVTPYELKSRVELALAAFGAAGNNLAGVVINNAPV---------DEAGRTEDLLAEFLESSGIAVVGVLPPNRLL 206 (354)
T ss_pred cccCChhhhhhHHHHHHHHhcccCCceEEEEecCCCh---------hhhhhhhhHHHHHhhhccccccccCCHHHHh
Confidence 5555444444333333 33344789999996542 2233445677888888898888888877555
No 143
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.63 E-value=0.00039 Score=59.19 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=34.7
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
..+..+.|..|+||||++..++..+. +.|.++++++.+...
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g~~~~yi~~e~~~ 64 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFL--QNGYSVSYVSTQLTT 64 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEEeCCCCH
Confidence 44777779999999999999988888 789999999987643
No 144
>PRK04296 thymidine kinase; Provisional
Probab=97.63 E-value=0.0014 Score=53.99 Aligned_cols=36 Identities=25% Similarity=0.133 Sum_probs=31.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD 85 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD 85 (294)
..|.++.|..|+||||.+..++..+. ..|++|+++.
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~--~~g~~v~i~k 37 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYE--ERGMKVLVFK 37 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHH--HcCCeEEEEe
Confidence 34677778899999999999999999 7899999993
No 145
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.62 E-value=0.00031 Score=56.14 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=34.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
|+++.|++. .|+||||++..|...|. ..|++|..+..|...
T Consensus 1 m~vi~i~G~-~gsGKTTli~~L~~~l~--~~g~~V~~iK~~~~~ 41 (159)
T cd03116 1 MKVIGFVGY-SGSGKTTLLEKLIPALS--ARGLRVAVIKHDHHD 41 (159)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH--HcCCcEEEEEecCCc
Confidence 456777755 59999999999999999 889999999877643
No 146
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.61 E-value=0.00096 Score=63.61 Aligned_cols=86 Identities=17% Similarity=0.069 Sum_probs=57.4
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i 239 (294)
|.+.++|+|+... ....+...+ ..+|.+|+|++.....-..+..+++.....+++ +.+++|+.+..
T Consensus 79 ~~inliDTPG~~d-f~~~~~~~l--~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP-iiv~iNK~D~~---------- 144 (526)
T PRK00741 79 CLINLLDTPGHED-FSEDTYRTL--TAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP-IFTFINKLDRD---------- 144 (526)
T ss_pred EEEEEEECCCchh-hHHHHHHHH--HHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC-EEEEEECCccc----------
Confidence 8899999996532 222233444 579999999987664444567777777778888 55899998731
Q ss_pred CCCCchhHHHHHhhcCCcee
Q psy11347 240 FPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 240 ~~~~~~~~~~~~~~~g~~~l 259 (294)
.....+.++++.+.++.+..
T Consensus 145 ~a~~~~~l~~i~~~l~~~~~ 164 (526)
T PRK00741 145 GREPLELLDEIEEVLGIACA 164 (526)
T ss_pred ccCHHHHHHHHHHHhCCCCe
Confidence 11233456677777776544
No 147
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.61 E-value=0.00023 Score=58.55 Aligned_cols=66 Identities=26% Similarity=0.250 Sum_probs=51.7
Q ss_pred CccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 159 GLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 159 ~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
.+.+.++|+|+.. +..-.+...+ ..+|.+|+|+++...-...+...+..+...+++ .-+++|++|.
T Consensus 69 ~~~i~~iDtPG~~-~f~~~~~~~~--~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~ 134 (188)
T PF00009_consen 69 NRKITLIDTPGHE-DFIKEMIRGL--RQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDL 134 (188)
T ss_dssp SEEEEEEEESSSH-HHHHHHHHHH--TTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTS
T ss_pred ccceeeccccccc-ceeeccccee--cccccceeeeecccccccccccccccccccccc-eEEeeeeccc
Confidence 3899999999643 3333444445 689999999998877777888999999999999 7799999983
No 148
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.59 E-value=0.00026 Score=59.44 Aligned_cols=73 Identities=22% Similarity=0.226 Sum_probs=52.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhc--cccccccccccCCCCcceeccCeEE
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMM--GLLNEQVHQSASGWSPVFLEENLSV 122 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~l--g~~~~~~~~~~~~~~~~~~~~~l~~ 122 (294)
+.+.+|+ |.+|+||||+...+...+. .....|.+...|...-+-.... ......+++..+.+..+...+|+.+
T Consensus 34 Gei~~ii-GgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVaf 108 (263)
T COG1127 34 GEILAIL-GGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF 108 (263)
T ss_pred CcEEEEE-CCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhe
Confidence 4445555 7788999999999999999 8888999999887654433332 2334456677777777666666655
No 149
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.58 E-value=0.00033 Score=57.24 Aligned_cols=38 Identities=24% Similarity=0.185 Sum_probs=34.2
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
.++.|..|+|||+++..++...+ +.|.+|+++.++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~~~ 39 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEESP 39 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCCCH
Confidence 57789999999999999999999 889999999997653
No 150
>PRK00049 elongation factor Tu; Reviewed
Probab=97.56 E-value=0.00057 Score=63.00 Aligned_cols=66 Identities=24% Similarity=0.319 Sum_probs=48.5
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.++++|+|+. ......+...+ ..+|.++++++............+..+...+.+.+-+++|++|.
T Consensus 75 ~~i~~iDtPG~-~~f~~~~~~~~--~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 75 RHYAHVDCPGH-ADYVKNMITGA--AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred eEEEEEECCCH-HHHHHHHHhhh--ccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCC
Confidence 67999999964 22222333333 68999999998876555667778888888888866678999984
No 151
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.56 E-value=0.0012 Score=63.00 Aligned_cols=85 Identities=16% Similarity=0.053 Sum_probs=54.6
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i 239 (294)
+.+.|+|+|+... ....+...+ ..+|.+|+|++........+..+++.++..+.+ +.+++|+.+..
T Consensus 80 ~~inliDTPG~~d-f~~~~~~~l--~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~P-iivviNKiD~~---------- 145 (527)
T TIGR00503 80 CLVNLLDTPGHED-FSEDTYRTL--TAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTP-IFTFMNKLDRD---------- 145 (527)
T ss_pred eEEEEEECCChhh-HHHHHHHHH--HhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECcccc----------
Confidence 8899999996532 222233444 579999999988764444566777777777777 56889998831
Q ss_pred CCCCchhHHHHHhhcCCce
Q psy11347 240 FPKDSGGAEKMCAELSVPF 258 (294)
Q Consensus 240 ~~~~~~~~~~~~~~~g~~~ 258 (294)
..+..+..+++.+.++...
T Consensus 146 ~~~~~~ll~~i~~~l~~~~ 164 (527)
T TIGR00503 146 IRDPLELLDEVENELKINC 164 (527)
T ss_pred CCCHHHHHHHHHHHhCCCC
Confidence 1123344566666666543
No 152
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.53 E-value=0.0009 Score=57.04 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=43.0
Q ss_pred CcChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 33 DPGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 33 ~~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...++.+...+.. ....+..+.|..|+|||+++..++.... ..|.+|++++++-
T Consensus 8 ~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~--~~g~~~~y~~~e~ 63 (234)
T PRK06067 8 STGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL--KQGKKVYVITTEN 63 (234)
T ss_pred ecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH--hCCCEEEEEEcCC
Confidence 3556677776654 2466677778999999999999998877 6899999999974
No 153
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.52 E-value=0.0043 Score=49.52 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=27.1
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
+.++.|--|+||||+...+.... .+.++.++-.+.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~----~~~~~~~i~~~~ 36 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ----HGRKIAVIENEF 36 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc----cCCcEEEEecCC
Confidence 45677899999999999887653 367888876654
No 154
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.48 E-value=0.00052 Score=64.19 Aligned_cols=65 Identities=15% Similarity=0.095 Sum_probs=49.4
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhH-------HHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSL-------LDVRKEIDFCRKVNIPIIGVVENMAT 227 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~-------~~~~~~l~~l~~~~~~~~~vvvN~~~ 227 (294)
+.+.|+|+|+.. +..-.+...+ ..+|.+++|+++....+ ..+.+.+..+...+++.+.+++|++|
T Consensus 85 ~~i~lIDtPGh~-~f~~~~~~g~--~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD 156 (446)
T PTZ00141 85 YYFTIIDAPGHR-DFIKNMITGT--SQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMD 156 (446)
T ss_pred eEEEEEECCChH-HHHHHHHHhh--hhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccc
Confidence 889999999643 2233344444 68999999998876432 46778888888899998889999998
No 155
>PHA02542 41 41 helicase; Provisional
Probab=97.48 E-value=8.1e-05 Score=69.83 Aligned_cols=57 Identities=18% Similarity=0.139 Sum_probs=46.9
Q ss_pred CcChHHHHhhh-cc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCC
Q psy11347 33 DPGIELVKSHL-SN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGP 91 (294)
Q Consensus 33 ~~~~~~i~~~~-~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~ 91 (294)
...++.|...+ +. ....+.++++..|+||||++.++|...+ ..|++|+++.++....
T Consensus 173 ~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a--~~g~~Vl~fSLEM~~~ 231 (473)
T PHA02542 173 PFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYL--QQGYNVLYISMEMAEE 231 (473)
T ss_pred CCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHH--hcCCcEEEEeccCCHH
Confidence 45567777666 33 3567889999999999999999999999 7899999999987653
No 156
>CHL00071 tufA elongation factor Tu
Probab=97.48 E-value=0.0013 Score=61.00 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=49.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.++++|+|+ .....-.+...+ ..+|.++++++....-.......+..+...+++.+-+++|++|.
T Consensus 75 ~~~~~iDtPG-h~~~~~~~~~~~--~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~ 140 (409)
T CHL00071 75 RHYAHVDCPG-HADYVKNMITGA--AQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQ 140 (409)
T ss_pred eEEEEEECCC-hHHHHHHHHHHH--HhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCC
Confidence 6789999996 333223334444 57999999998876555667778888888888867788999984
No 157
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.47 E-value=0.00015 Score=63.93 Aligned_cols=42 Identities=31% Similarity=0.464 Sum_probs=35.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
...+..+-|.+|+||||+...|+..+. ..+.+|.+.+.|+..
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~ 71 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVK 71 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCcc
Confidence 344555558999999999999999999 888999999888765
No 158
>PRK12736 elongation factor Tu; Reviewed
Probab=97.47 E-value=0.00079 Score=62.05 Aligned_cols=66 Identities=23% Similarity=0.307 Sum_probs=47.7
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.++++|+|+.. .....+...+ ..+|.+++|++.+......+...+..+...+++.+-+++|++|.
T Consensus 75 ~~i~~iDtPGh~-~f~~~~~~~~--~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~ 140 (394)
T PRK12736 75 RHYAHVDCPGHA-DYVKNMITGA--AQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDL 140 (394)
T ss_pred cEEEEEECCCHH-HHHHHHHHHH--hhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCC
Confidence 688999999632 2222333333 57899999998876555567777888888888877788999984
No 159
>PLN03126 Elongation factor Tu; Provisional
Probab=97.47 E-value=0.0011 Score=62.41 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=49.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.++|+|+.. ...-.+...+ ..+|.+++|++........+...+..+...+++.+-+++|++|.
T Consensus 144 ~~i~liDtPGh~-~f~~~~~~g~--~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl 209 (478)
T PLN03126 144 RHYAHVDCPGHA-DYVKNMITGA--AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQ 209 (478)
T ss_pred cEEEEEECCCHH-HHHHHHHHHH--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 688999999633 2222334444 57899999998776656667788888888898877789999984
No 160
>KOG1534|consensus
Probab=97.45 E-value=0.00015 Score=59.50 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=38.3
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
|++.-.++-|.-|+||||.+.++-.+.. ..|+++.+|.+||..
T Consensus 1 mm~ya~lV~GpAgSGKSTyC~~~~~h~e--~~gRs~~vVNLDPAa 43 (273)
T KOG1534|consen 1 MMRYAQLVMGPAGSGKSTYCSSMYEHCE--TVGRSVHVVNLDPAA 43 (273)
T ss_pred CCceeEEEEccCCCCcchHHHHHHHHHH--hhCceeEEeecCHHH
Confidence 4566677789999999999999999999 899999999999964
No 161
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=97.45 E-value=0.00075 Score=61.93 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=34.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
|++|.|++-| |+||||++..|...|. .+|+||.+|-.+-
T Consensus 1 MkVi~IvG~s-gSGKTTLiekLI~~L~--~rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGWK-DAGKTGLVERLVAAIA--ARGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEecC-CCCHHHHHHHHHHHHH--hCCCeEEEEeccC
Confidence 5688888765 9999999999999999 9999999987654
No 162
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.42 E-value=0.00059 Score=58.58 Aligned_cols=42 Identities=33% Similarity=0.365 Sum_probs=34.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
...+..+-|.+|+||||+-..|+..+. .....|++-+.|...
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~ 68 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIAS 68 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhh
Confidence 334555559999999999999999999 888899998887654
No 163
>PRK12735 elongation factor Tu; Reviewed
Probab=97.41 E-value=0.0016 Score=60.03 Aligned_cols=66 Identities=24% Similarity=0.319 Sum_probs=46.8
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
..++++|+|+. ....-.+...+ ..+|.++++++....-...+...+..+...+++.+.+++|++|.
T Consensus 75 ~~i~~iDtPGh-~~f~~~~~~~~--~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl 140 (396)
T PRK12735 75 RHYAHVDCPGH-ADYVKNMITGA--AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred cEEEEEECCCH-HHHHHHHHhhh--ccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCC
Confidence 67899999964 22222233333 57899999998876445566677788888888876678999984
No 164
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.41 E-value=0.00015 Score=57.60 Aligned_cols=43 Identities=33% Similarity=0.399 Sum_probs=35.7
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM 93 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l 93 (294)
.+.++.|..|+||||+|..|...|. ..|.+|.++|.|.-...+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~--~~g~~~~~LDgD~lR~~l 45 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLF--ARGIKVYLLDGDNLRHGL 45 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH--HTTS-EEEEEHHHHCTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEecCcchhhcc
Confidence 3566678999999999999999999 899999999999654433
No 165
>PRK00007 elongation factor G; Reviewed
Probab=97.40 E-value=0.0019 Score=63.90 Aligned_cols=91 Identities=19% Similarity=0.078 Sum_probs=62.6
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i 239 (294)
+.+.++|+|+.. +....+..++ ..+|.+|+|++....--.....++..+.+.+.+.+ +++|++|.. .
T Consensus 75 ~~~~liDTPG~~-~f~~ev~~al--~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~------~--- 141 (693)
T PRK00007 75 HRINIIDTPGHV-DFTIEVERSL--RVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDRT------G--- 141 (693)
T ss_pred eEEEEEeCCCcH-HHHHHHHHHH--HHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCCC------C---
Confidence 899999999654 2333455555 67899999998776656667888888888998875 899999842 1
Q ss_pred CCCCchhHHHHHhhcCCcee-eccCC
Q psy11347 240 FPKDSGGAEKMCAELSVPFL-GSVPI 264 (294)
Q Consensus 240 ~~~~~~~~~~~~~~~g~~~l-~~Ip~ 264 (294)
.+.....+++.+.++.... ..||-
T Consensus 142 -~~~~~~~~~i~~~l~~~~~~~~ipi 166 (693)
T PRK00007 142 -ADFYRVVEQIKDRLGANPVPIQLPI 166 (693)
T ss_pred -CCHHHHHHHHHHHhCCCeeeEEecC
Confidence 2234456677666665432 34443
No 166
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.40 E-value=0.0014 Score=52.04 Aligned_cols=91 Identities=25% Similarity=0.143 Sum_probs=57.4
Q ss_pred ccEEEEcCCCCC-----ChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCC
Q psy11347 160 LEYLLIDTPPGT-----SDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCT 234 (294)
Q Consensus 160 yd~IiiD~p~~~-----~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~ 234 (294)
..+.++|+|+.. +.+.......+.....|.++.|++.+. ++.-..+..++.+.+.+ .-+++||+|..
T Consensus 47 ~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P-~vvvlN~~D~a----- 118 (156)
T PF02421_consen 47 QQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIP-VVVVLNKMDEA----- 118 (156)
T ss_dssp EEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSS-EEEEEETHHHH-----
T ss_pred ceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCC-EEEEEeCHHHH-----
Confidence 789999999632 233333445554568999999998876 44445677788888988 45899999842
Q ss_pred CCCccCCCCchhHHHHHhhcCCceeecc
Q psy11347 235 KPSEIFPKDSGGAEKMCAELSVPFLGSV 262 (294)
Q Consensus 235 ~~~~i~~~~~~~~~~~~~~~g~~~l~~I 262 (294)
.+..+. -..+.+.+.+|+|++...
T Consensus 119 ~~~g~~----id~~~Ls~~Lg~pvi~~s 142 (156)
T PF02421_consen 119 ERKGIE----IDAEKLSERLGVPVIPVS 142 (156)
T ss_dssp HHTTEE----E-HHHHHHHHTS-EEEEB
T ss_pred HHcCCE----ECHHHHHHHhCCCEEEEE
Confidence 122222 135677788899887543
No 167
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.39 E-value=0.0026 Score=53.92 Aligned_cols=67 Identities=16% Similarity=0.100 Sum_probs=48.0
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.++|+|+.. ...-.+...+....+|.++++++.+..-......++.++...+++ ..+|+|++|.
T Consensus 84 ~~i~liDtpG~~-~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip-~ivvvNK~D~ 150 (224)
T cd04165 84 KLVTFIDLAGHE-RYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP-VFVVVTKIDL 150 (224)
T ss_pred cEEEEEECCCcH-HHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-EEEEEECccc
Confidence 789999999643 222223333321258999999987765566778888889989988 4689999983
No 168
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.37 E-value=0.001 Score=61.27 Aligned_cols=66 Identities=24% Similarity=0.318 Sum_probs=47.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+.. .....+...+ ..+|.++++++....-...+...+..+...+++.+-+++|++|.
T Consensus 75 ~~~~liDtpGh~-~f~~~~~~~~--~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 75 RHYAHVDCPGHA-DYVKNMITGA--AQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (394)
T ss_pred EEEEEEECCchH-HHHHHHHHHH--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEeccc
Confidence 678999999643 2222333333 57899999998876545566777888888888877678999984
No 169
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.00086 Score=54.36 Aligned_cols=39 Identities=31% Similarity=0.497 Sum_probs=29.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~ 63 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKD 63 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEE
Confidence 344555558999999999999999987 666777765443
No 170
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.35 E-value=0.0017 Score=54.45 Aligned_cols=65 Identities=20% Similarity=0.131 Sum_probs=42.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+.... .......+ ..+|.+|+|++...........+++.+...+.+ ..+|+|+.+.
T Consensus 71 ~~i~iiDtpG~~~f-~~~~~~~~--~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~ 135 (213)
T cd04167 71 YLFNIIDTPGHVNF-MDEVAAAL--RLSDGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDR 135 (213)
T ss_pred EEEEEEECCCCcch-HHHHHHHH--HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECccc
Confidence 88999999975432 11233333 578999999987653333444555655555655 5689999984
No 171
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.34 E-value=0.00046 Score=57.63 Aligned_cols=72 Identities=22% Similarity=0.245 Sum_probs=59.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEE
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSV 122 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~ 122 (294)
.|+.+-|.+|+||||+...++.... ....+|.+-+.|...-..+........++++...-+..+...+|+.+
T Consensus 30 eiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~ 101 (237)
T COG0410 30 EIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLL 101 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhh
Confidence 3444458999999999999999999 88889999999988877777777777788888777777777777764
No 172
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.33 E-value=0.0013 Score=53.57 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=28.8
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
..+..+-|.+|+||||+...|+..+. ....+|.+-+.+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~ 63 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGED 63 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 33444558999999999999999888 666777765443
No 173
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.33 E-value=0.00071 Score=55.33 Aligned_cols=40 Identities=13% Similarity=0.200 Sum_probs=30.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 64 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPV 64 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 333455558899999999999999998 7777887655554
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.32 E-value=0.0013 Score=50.21 Aligned_cols=39 Identities=31% Similarity=0.336 Sum_probs=32.2
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
..++.|..|+||||++..+|..+. ..+..+++++.+...
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~ 42 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDIL 42 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEcc
Confidence 445567799999999999999999 666789999887643
No 175
>PRK12739 elongation factor G; Reviewed
Probab=97.32 E-value=0.0013 Score=65.02 Aligned_cols=90 Identities=19% Similarity=0.106 Sum_probs=60.4
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i 239 (294)
+.++++|+|+.. +....+...+ ..+|.+++|++....--.....++..+.+.+.+.+ +++|++|.. .
T Consensus 73 ~~i~liDTPG~~-~f~~e~~~al--~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~D~~------~--- 139 (691)
T PRK12739 73 HRINIIDTPGHV-DFTIEVERSL--RVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKMDRI------G--- 139 (691)
T ss_pred EEEEEEcCCCHH-HHHHHHHHHH--HHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCC------C---
Confidence 899999999643 2333455555 57899999998876545556788888888888875 899999842 1
Q ss_pred CCCCchhHHHHHhhcCCcee-eccC
Q psy11347 240 FPKDSGGAEKMCAELSVPFL-GSVP 263 (294)
Q Consensus 240 ~~~~~~~~~~~~~~~g~~~l-~~Ip 263 (294)
.+.....+++.+.++...+ ..+|
T Consensus 140 -~~~~~~~~~i~~~l~~~~~~~~iP 163 (691)
T PRK12739 140 -ADFFRSVEQIKDRLGANAVPIQLP 163 (691)
T ss_pred -CCHHHHHHHHHHHhCCCceeEEec
Confidence 1233455666666655332 3445
No 176
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.31 E-value=0.00069 Score=63.84 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=44.2
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.++|+|+|+.. ...-.+...+ ..+|.+++|++....-...+...+..+...+.+.+.+++|++|.
T Consensus 107 ~~i~~iDTPGh~-~f~~~~~~~l--~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~ 172 (474)
T PRK05124 107 RKFIIADTPGHE-QYTRNMATGA--STCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDL 172 (474)
T ss_pred cEEEEEECCCcH-HHHHHHHHHH--hhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecc
Confidence 789999999732 2222333334 68999999998765433334455555666666666789999984
No 177
>KOG2749|consensus
Probab=97.28 E-value=0.00095 Score=59.03 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=37.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM 93 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l 93 (294)
++++.++ |...+||||++..|-.+.. +.|++.+++|+|+.+++.
T Consensus 103 GPrv~vV-Gp~d~GKsTl~r~L~nyav--k~gr~Plfv~LDvgQ~si 146 (415)
T KOG2749|consen 103 GPRVMVV-GPTDVGKSTLCRILLNYAV--KQGRRPLFVELDVGQGSI 146 (415)
T ss_pred CCEEEEE-CCCccchHHHHHHHHHHHH--HcCCcceEEEcCCCCCce
Confidence 6677777 5567999999999999999 789999999999988653
No 178
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.28 E-value=0.002 Score=51.78 Aligned_cols=40 Identities=28% Similarity=0.428 Sum_probs=30.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~ 64 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEV 64 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEC
Confidence 344555569999999999999999988 6677776654443
No 179
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.28 E-value=0.00075 Score=56.03 Aligned_cols=48 Identities=33% Similarity=0.374 Sum_probs=36.3
Q ss_pred HhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 40 KSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 40 ~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
+.........+.++.|.+|+||||++..|+..|. ..|..+.++|.|..
T Consensus 16 ~~~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~--~~~~~~~~ld~d~~ 63 (198)
T PRK03846 16 REQLHGHKGVVLWFTGLSGSGKSTVAGALEEALH--ELGVSTYLLDGDNV 63 (198)
T ss_pred HHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH--hCCCCEEEEcCEeH
Confidence 3333323334555558889999999999999999 78999999998864
No 180
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.27 E-value=0.00099 Score=61.63 Aligned_cols=66 Identities=12% Similarity=0.115 Sum_probs=46.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+.. ...-.+...+ ..+|.+++|++....-...+.+.+..+...+.+.+-+++|++|.
T Consensus 80 ~~~~liDtPGh~-~f~~~~~~~~--~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 80 RKFIVADTPGHE-QYTRNMATGA--STADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred eEEEEEeCCCHH-HHHHHHHHHH--hhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 789999999632 1112233334 68999999998876544556666667777777767789999984
No 181
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.26 E-value=0.00097 Score=53.85 Aligned_cols=39 Identities=28% Similarity=0.410 Sum_probs=32.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
++.+-|.+|+||||+-..+|.... .....+++.+-|...
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~ 65 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTA 65 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCc
Confidence 444558899999999999999999 889999998888543
No 182
>PRK12740 elongation factor G; Reviewed
Probab=97.26 E-value=0.0022 Score=63.25 Aligned_cols=91 Identities=20% Similarity=0.108 Sum_probs=60.2
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i 239 (294)
|++.++|+|+... ....+...+ ..+|.+++|+++...........+..+...+.+.+ +|+|+++.. .
T Consensus 60 ~~i~liDtPG~~~-~~~~~~~~l--~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~D~~------~--- 126 (668)
T PRK12740 60 HKINLIDTPGHVD-FTGEVERAL--RVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI-IFVNKMDRA------G--- 126 (668)
T ss_pred EEEEEEECCCcHH-HHHHHHHHH--HHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEECCCCC------C---
Confidence 8999999997543 112233334 57999999999887655666677777777777754 799999842 1
Q ss_pred CCCCchhHHHHHhhcCCcee-eccCC
Q psy11347 240 FPKDSGGAEKMCAELSVPFL-GSVPI 264 (294)
Q Consensus 240 ~~~~~~~~~~~~~~~g~~~l-~~Ip~ 264 (294)
.+.....+++.+.++.+.+ ..+|.
T Consensus 127 -~~~~~~~~~l~~~l~~~~~~~~~p~ 151 (668)
T PRK12740 127 -ADFFRVLAQLQEKLGAPVVPLQLPI 151 (668)
T ss_pred -CCHHHHHHHHHHHHCCCceeEEecc
Confidence 1233456666666776554 34553
No 183
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.25 E-value=0.0017 Score=57.88 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=44.9
Q ss_pred CcChHHHHhhhc-c--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 33 DPGIELVKSHLS-N--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 33 ~~~~~~i~~~~~-~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...++.|...+. . ....+..+.|..|+||||++..++...+ ..|.+|++||+.-
T Consensus 37 sTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~--~~g~~~vyId~E~ 93 (325)
T cd00983 37 PTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQ--KLGGTVAFIDAEH 93 (325)
T ss_pred cCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEECccc
Confidence 466777888777 2 3466777888999999999999999999 7899999999854
No 184
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.25 E-value=0.00042 Score=61.78 Aligned_cols=71 Identities=21% Similarity=0.196 Sum_probs=52.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEE
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSV 122 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~ 122 (294)
...+.++-|.+|+||||+-..+|.... ..+.++.+-|-|.+.- .--..+...++++...|+.+...+|+.+
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l---~P~~R~iamVFQ~yALyPhmtV~~Niaf 98 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDL---PPEKRGIAMVFQNYALYPHMTVYENIAF 98 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCC---ChhHCCEEEEeCCccccCCCcHHHHhhh
Confidence 445677779999999999999999999 8999999988887641 1112333456677777777776666654
No 185
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.25 E-value=0.0047 Score=49.24 Aligned_cols=30 Identities=30% Similarity=0.285 Sum_probs=26.2
Q ss_pred cCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 55 GKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 55 ~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
+..|.||||.|..+|...+ ..|.+|+++-+
T Consensus 9 ~g~G~Gkt~~a~g~~~ra~--~~g~~v~~vQF 38 (159)
T cd00561 9 TGNGKGKTTAALGLALRAL--GHGYRVGVVQF 38 (159)
T ss_pred CCCCCCHHHHHHHHHHHHH--HCCCeEEEEEE
Confidence 4459999999999999999 89999999543
No 186
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.24 E-value=0.00085 Score=56.47 Aligned_cols=53 Identities=23% Similarity=0.243 Sum_probs=42.6
Q ss_pred ChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 35 GIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 35 ~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
.++.|...+.. ....+..+.|.+|+||||++..+|..++ ..|.+|+++|++..
T Consensus 4 Gi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~--~~g~~v~yi~~e~~ 58 (218)
T cd01394 4 GCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETA--GQGKKVAYIDTEGL 58 (218)
T ss_pred chhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCCC
Confidence 34556665542 3467788889999999999999999999 78999999998754
No 187
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0036 Score=56.72 Aligned_cols=50 Identities=30% Similarity=0.362 Sum_probs=39.7
Q ss_pred hHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 36 IELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 36 ~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
+..+.+-+.. ...-+..++|..|+||||+...+|..++ .++ +||+|-...
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA--~~~-~vLYVsGEE 130 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA--KRG-KVLYVSGEE 130 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH--hcC-cEEEEeCCc
Confidence 3344444444 4666888999999999999999999999 777 999997754
No 188
>PRK07667 uridine kinase; Provisional
Probab=97.20 E-value=0.00065 Score=56.19 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=35.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
+.+..++|.+|+||||+|..|+..|. ..|.+|.+++.|..
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~--~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMK--QEGIPFHIFHIDDY 56 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEEEcCcc
Confidence 46777779999999999999999999 88999999999963
No 189
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.0026 Score=53.96 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=29.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
..++-+-|.+|+||||+-..+|.... .....|.+-+--
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~ 66 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRP 66 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCcc
Confidence 33444558999999999999999999 777777665543
No 190
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.19 E-value=0.00067 Score=55.06 Aligned_cols=38 Identities=34% Similarity=0.448 Sum_probs=33.1
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
+.++.|-.|+||||++..|+..+. ..|.+|.++|.|..
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~--~~g~~v~~id~D~~ 43 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLR--EAGYPVEVLDGDAV 43 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEcCccH
Confidence 555558899999999999999999 78899999999853
No 191
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.19 E-value=0.0021 Score=50.82 Aligned_cols=36 Identities=31% Similarity=0.548 Sum_probs=29.6
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVL 84 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vlli 84 (294)
++..|.+ .|..||||||++.-+|-.|. ..|++|.-+
T Consensus 4 ~~mki~I-TG~PGvGKtTl~~ki~e~L~--~~g~kvgGf 39 (179)
T COG1618 4 MAMKIFI-TGRPGVGKTTLVLKIAEKLR--EKGYKVGGF 39 (179)
T ss_pred cceEEEE-eCCCCccHHHHHHHHHHHHH--hcCceeeeE
Confidence 4445554 58899999999999999999 889998655
No 192
>PRK05595 replicative DNA helicase; Provisional
Probab=97.18 E-value=0.00029 Score=65.98 Aligned_cols=57 Identities=21% Similarity=0.390 Sum_probs=43.8
Q ss_pred CcChHHHHhhhccC-ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 33 DPGIELVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 33 ~~~~~~i~~~~~~~-~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
....+.|...+... ...+.++++..|+|||+++.++|..++ ...|++|+++.+....
T Consensus 185 ~tg~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a-~~~g~~vl~fSlEms~ 242 (444)
T PRK05595 185 ASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAA-LREGKSVAIFSLEMSK 242 (444)
T ss_pred cCChHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHH-HHcCCcEEEEecCCCH
Confidence 34566666655433 567889999999999999999999765 1469999999887643
No 193
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.18 E-value=0.00023 Score=60.88 Aligned_cols=42 Identities=17% Similarity=0.363 Sum_probs=36.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~~~ 90 (294)
...+.++++..|+|||+++.+++..++ .. |.+|+++.++...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~--~~~g~~vly~s~E~~~ 54 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIA--KKQGKPVLFFSLEMSK 54 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCceEEEeCCCCH
Confidence 456888899999999999999999998 55 9999999998753
No 194
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.18 E-value=0.00098 Score=56.22 Aligned_cols=40 Identities=25% Similarity=0.411 Sum_probs=30.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 64 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDI 64 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 344555559999999999999999988 6777887755544
No 195
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.18 E-value=0.0017 Score=60.69 Aligned_cols=65 Identities=11% Similarity=0.037 Sum_probs=47.9
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhH-------HHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSL-------LDVRKEIDFCRKVNIPIIGVVENMAT 227 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~-------~~~~~~l~~l~~~~~~~~~vvvN~~~ 227 (294)
+.+.|+|+|+.. +..-.+...+ ..+|..|+|++.....+ ..+.+.+..+...+++.+-+++|+.|
T Consensus 85 ~~i~liDtPGh~-df~~~~~~g~--~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD 156 (447)
T PLN00043 85 YYCTVIDAPGHR-DFIKNMITGT--SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 156 (447)
T ss_pred EEEEEEECCCHH-HHHHHHHhhh--hhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEccc
Confidence 889999999643 2222334444 68999999998876544 35667777777889987788899998
No 196
>PRK00089 era GTPase Era; Reviewed
Probab=97.17 E-value=0.0031 Score=55.57 Aligned_cols=66 Identities=17% Similarity=0.083 Sum_probs=40.8
Q ss_pred ccEEEEcCCCCCChHH-------HHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEH-------LSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~-------~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
++++++|+|+-..... ......+ ..+|.++++++.+..--.....+++.+...+.+ ..+|+|++|.
T Consensus 53 ~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~--~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~p-vilVlNKiDl 125 (292)
T PRK00089 53 AQIIFVDTPGIHKPKRALNRAMNKAAWSSL--KDVDLVLFVVDADEKIGPGDEFILEKLKKVKTP-VILVLNKIDL 125 (292)
T ss_pred ceEEEEECCCCCCchhHHHHHHHHHHHHHH--hcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCC-EEEEEECCcC
Confidence 7899999996433210 1112223 579999999887662223344555666555555 4588999983
No 197
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.15 E-value=0.0022 Score=54.88 Aligned_cols=42 Identities=31% Similarity=0.262 Sum_probs=33.6
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhh----------cCCCCcEEEEecCCCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAK----------SNESVDVGVLDLDICG 90 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~----------~~~g~~VlliD~D~~~ 90 (294)
.++++.+.+|+||||++..+|...+. ...+.+|++++++...
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~ 53 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPR 53 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCH
Confidence 47888999999999999999998661 1256789999987643
No 198
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.00075 Score=57.48 Aligned_cols=38 Identities=39% Similarity=0.450 Sum_probs=30.5
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
...+-|.+|+||||+...|+..+. .....|.+-+.+..
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~ 69 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTS 69 (235)
T ss_pred EEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeecc
Confidence 444558888999999999999999 88888866666543
No 199
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.13 E-value=0.0027 Score=56.51 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=44.1
Q ss_pred CcChHHHHhhhc--c-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 33 DPGIELVKSHLS--N-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 33 ~~~~~~i~~~~~--~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...++.|...+. . ....+..+.|..|+||||++.+++...+ ..|.+|++||+.-
T Consensus 37 ~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~--~~g~~v~yId~E~ 93 (321)
T TIGR02012 37 STGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEH 93 (321)
T ss_pred cCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEcccc
Confidence 356777887775 2 3456777778899999999999999999 7899999999864
No 200
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.12 E-value=0.0084 Score=48.83 Aligned_cols=144 Identities=15% Similarity=0.103 Sum_probs=72.3
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccccc
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLL 129 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 129 (294)
+.+++|==|+||||+..+|.. .. ..+.|+.+|-.|...-+.+..+ + ...+..+.....
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~--~~~~~~~vI~ne~g~~~iD~~~------l-----------~~~~~~v~~l~~-- 59 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RN--RQGERVAVIVNEFGEVNIDAEL------L-----------QEDGVPVVELNN-- 59 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HH--TTTS-EEEEECSTTSTHHHHHH------H-----------HTTT-EEEEECT--
T ss_pred EEEEEcCCCCCHHHHHHHHHH-Hh--cCCceeEEEEccccccccchhh------h-----------cccceEEEEecC--
Confidence 456777889999999999999 55 6899999998877532222111 0 111222222110
Q ss_pred CCCCcceeecCccchHHHHHHHHhhccCC--CccEEEEcCCCCCChHHHH----HHHHhhcCCCcEEEEecCCchh-hHH
Q psy11347 130 NSPDDAVIWRGPKKNTMIRQFLSEVDWGN--GLEYLLIDTPPGTSDEHLS----LVQYLKGLPDIGAIVVTTPQEV-SLL 202 (294)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~--~yd~IiiD~p~~~~~~~~~----~~~~l~~~~ad~vliv~~~~~~-s~~ 202 (294)
...... ....+...+..+.... ++|+|||.+.+......+. .+... ..-+.+|.++++... ...
T Consensus 60 ---gcicc~----~~~~~~~~l~~l~~~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~--~~~~~iI~vVDa~~~~~~~ 130 (178)
T PF02492_consen 60 ---GCICCT----LRDDLVEALRRLLREYEERPDRIIIETSGLADPAPLILQDPPLKED--FRLDSIITVVDATNFDELE 130 (178)
T ss_dssp ---TTESS-----TTS-HHHHHHHHCCCCHGC-SEEEEEEECSSGGGGHHHHSHHHHHH--ESESEEEEEEEGTTHGGHT
T ss_pred ---CCcccc----cHHHHHHHHHHHHHhcCCCcCEEEECCccccccchhhhcccccccc--ccccceeEEeccccccccc
Confidence 000000 0113445555554333 4899999999744433320 01111 245778888877443 111
Q ss_pred HH-HHHHHHHHhcCCCeeEEEeccccc
Q psy11347 203 DV-RKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 203 ~~-~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
.. ..+.++++. - -.+|+|+.+.
T Consensus 131 ~~~~~~~~Qi~~---A-DvIvlnK~D~ 153 (178)
T PF02492_consen 131 NIPELLREQIAF---A-DVIVLNKIDL 153 (178)
T ss_dssp THCHHHHHHHCT-----SEEEEE-GGG
T ss_pred cchhhhhhcchh---c-CEEEEecccc
Confidence 11 122222222 1 3688999874
No 201
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.11 E-value=0.00053 Score=58.29 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=29.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+-+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~ 63 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQD 63 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEe
Confidence 334555559999999999999999988 667777765444
No 202
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.11 E-value=0.0029 Score=62.80 Aligned_cols=65 Identities=22% Similarity=0.112 Sum_probs=46.5
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
|++.|+|||+.... ...+..++ ..+|.+|+|++....-......+++.+.+.+.+.+ +++|++|.
T Consensus 86 ~~i~liDTPG~~~f-~~~~~~al--~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~ 150 (720)
T TIGR00490 86 YLINLIDTPGHVDF-GGDVTRAM--RAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDR 150 (720)
T ss_pred eEEEEEeCCCcccc-HHHHHHHH--HhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChhc
Confidence 99999999976431 12334444 67999999998765444556677777767777765 99999984
No 203
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.11 E-value=0.015 Score=45.75 Aligned_cols=65 Identities=15% Similarity=0.070 Sum_probs=40.1
Q ss_pred ccEEEEcCCCCCChHHH-------HHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347 160 LEYLLIDTPPGTSDEHL-------SLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMAT 227 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~-------~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~ 227 (294)
++++++|+|+-...... .....+ ..+|.++++++......+....+.+.+...+.+ ..+|+|+.+
T Consensus 51 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D 122 (168)
T cd04163 51 AQIIFVDTPGIHKPKKKLGERMVKAAWSAL--KDVDLVLFVVDASEPIGEGDEFILELLKKSKTP-VILVLNKID 122 (168)
T ss_pred eEEEEEECCCCCcchHHHHHHHHHHHHHHH--HhCCEEEEEEECCCccCchHHHHHHHHHHhCCC-EEEEEEchh
Confidence 78999999864321110 111122 578988888887765333444555666655555 568999987
No 204
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.09 E-value=0.0031 Score=57.47 Aligned_cols=53 Identities=30% Similarity=0.363 Sum_probs=43.1
Q ss_pred cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
..++.+.+.+.. ....+.++.|..|+||||++..+|..++ ..+.+|++++...
T Consensus 66 TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a--~~g~~VlYvs~EE 120 (372)
T cd01121 66 TGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA--KRGGKVLYVSGEE 120 (372)
T ss_pred cCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCc
Confidence 456666666643 3467888889999999999999999999 7889999998864
No 205
>PRK10218 GTP-binding protein; Provisional
Probab=97.08 E-value=0.013 Score=56.84 Aligned_cols=65 Identities=12% Similarity=-0.017 Sum_probs=47.6
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+... ..-.+...+ ..+|.+|+|++........+...+..+...+++. -+++|++|.
T Consensus 68 ~~inliDTPG~~d-f~~~v~~~l--~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~-IVviNKiD~ 132 (607)
T PRK10218 68 YRINIVDTPGHAD-FGGEVERVM--SMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKP-IVVINKVDR 132 (607)
T ss_pred EEEEEEECCCcch-hHHHHHHHH--HhCCEEEEEEecccCccHHHHHHHHHHHHcCCCE-EEEEECcCC
Confidence 8899999996433 222233334 6899999999887665666777777777888886 488999983
No 206
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.08 E-value=0.0078 Score=50.27 Aligned_cols=46 Identities=26% Similarity=0.357 Sum_probs=34.8
Q ss_pred hhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 41 SHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 41 ~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
+.+......+..+.|-.|+||||+...++..+. . +.+|.++..|..
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~--~-~~~v~v~~~~~~ 60 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK--D-EVKIAVIEGDVI 60 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh--c-CCeEEEEECCCC
Confidence 344444555555668889999999999999877 3 579999998763
No 207
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.08 E-value=0.0014 Score=55.98 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=30.9
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.+..+-|.+|+||||+...+...+. ....+|.+.+...
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 4555558899999999999999999 7788888876644
No 208
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.07 E-value=0.013 Score=46.66 Aligned_cols=65 Identities=18% Similarity=0.114 Sum_probs=42.6
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+++.++|+|+...... .....+ ..+|.++++++.+..........+..+...+.+ ..+|+|+++.
T Consensus 50 ~~~~iiDtpG~~~~~~-~~~~~~--~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl 114 (168)
T cd01887 50 PGITFIDTPGHEAFTN-MRARGA--SLTDIAILVVAADDGVMPQTIEAIKLAKAANVP-FIVALNKIDK 114 (168)
T ss_pred ceEEEEeCCCcHHHHH-HHHHHH--hhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEEceec
Confidence 8999999996432111 111222 578999999988764444455556666667776 5688899883
No 209
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.07 E-value=0.0013 Score=57.11 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=36.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+.|..|+||||++..+|...+ ..|.+|++++++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecC
Confidence 567888889999999999999999988 7899999999974
No 210
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.07 E-value=0.0019 Score=54.56 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=42.6
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchh-------hHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEV-------SLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~-------s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.++|+|+.. ...-.....+ ..+|.+|+|++.... ....+...+......+.+.+.+++|++|.
T Consensus 77 ~~i~liDtpG~~-~~~~~~~~~~--~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl 149 (219)
T cd01883 77 YRFTILDAPGHR-DFVPNMITGA--SQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDD 149 (219)
T ss_pred eEEEEEECCChH-HHHHHHHHHh--hhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 889999999532 2222333333 579999999887653 12234445555556666667789999983
No 211
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.06 E-value=0.0039 Score=50.47 Aligned_cols=39 Identities=31% Similarity=0.377 Sum_probs=29.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
...+..+.|.+|+||||+...|+..+. ....+|.+-+.+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~ 65 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGAD 65 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEE
Confidence 344555569999999999999999988 667777764433
No 212
>PRK06696 uridine kinase; Validated
Probab=97.06 E-value=0.0014 Score=55.56 Aligned_cols=42 Identities=21% Similarity=0.242 Sum_probs=35.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
.+.+..++|.+|+||||+|..|+..|. ..|.+|+.+-+|-..
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~--~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIK--KRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecccccc
Confidence 567778889999999999999999999 778899988777543
No 213
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.05 E-value=0.0021 Score=62.18 Aligned_cols=65 Identities=15% Similarity=0.058 Sum_probs=48.9
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+... ..-.+...+ ..+|.+++|++........+..++..+...+++. -+++|+.|.
T Consensus 64 ~kinlIDTPGh~D-F~~ev~~~l--~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~-IVviNKiD~ 128 (594)
T TIGR01394 64 TKINIVDTPGHAD-FGGEVERVL--GMVDGVLLLVDASEGPMPQTRFVLKKALELGLKP-IVVINKIDR 128 (594)
T ss_pred EEEEEEECCCHHH-HHHHHHHHH--HhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCE-EEEEECCCC
Confidence 8899999996432 222333344 6799999999987766677788888888888885 589999983
No 214
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.04 E-value=0.0042 Score=50.94 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=32.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
.+-...+-+..|-||||.|..+|...+ -.|.+|+++-+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~--g~G~~V~ivQF 58 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV--GHGKKVGVVQF 58 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH--HCCCeEEEEEE
Confidence 444556667889999999999999999 89999999865
No 215
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=97.04 E-value=0.00067 Score=63.10 Aligned_cols=57 Identities=21% Similarity=0.336 Sum_probs=44.6
Q ss_pred CcChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 33 DPGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 33 ~~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
....+.|...+.. ....+.++++..|+|||+++.++|..++ ...|++|+++.++...
T Consensus 178 ~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a-~~~g~~v~~fSlEm~~ 235 (421)
T TIGR03600 178 STGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVA-LREGKPVLFFSLEMSA 235 (421)
T ss_pred eCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHH-HhCCCcEEEEECCCCH
Confidence 4556666666543 3566889999999999999999998887 2468999999988643
No 216
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.0019 Score=55.25 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=30.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+.|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 65 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDI 65 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEec
Confidence 344555558999999999999999887 6667777655443
No 217
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=97.03 E-value=0.0011 Score=61.62 Aligned_cols=52 Identities=25% Similarity=0.216 Sum_probs=45.6
Q ss_pred CceEEEEEecCC---CchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc
Q psy11347 46 VKHKVLVLSGKG---GVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE 102 (294)
Q Consensus 46 ~~~~i~v~s~kG---GvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~ 102 (294)
..++|.|++.-. |.||||++.+||..|+ ..|+||+++ ...+++...||....
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la--~~Gkk~l~~---LR~PSlg~~fg~kgg 91 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALN--AHGKKAIAC---LREPSLGPTFGIKGG 91 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHH--HhCCcEEEE---EecCCcCcccCCCCC
Confidence 478999999888 9999999999999999 899999988 667788888877655
No 218
>COG1159 Era GTPase [General function prediction only]
Probab=97.03 E-value=0.0075 Score=52.38 Aligned_cols=67 Identities=16% Similarity=0.057 Sum_probs=42.7
Q ss_pred CccEEEEcCCCCCChHH-------HHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 159 GLEYLLIDTPPGTSDEH-------LSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 159 ~yd~IiiD~p~~~~~~~-------~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
++.+|++|||+-..... -.....+ ..+|.++.+++.+..-=..-..+++.+...+.+ .-+++|+++.
T Consensus 53 ~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl--~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~p-vil~iNKID~ 126 (298)
T COG1159 53 NAQIIFVDTPGIHKPKHALGELMNKAARSAL--KDVDLILFVVDADEGWGPGDEFILEQLKKTKTP-VILVVNKIDK 126 (298)
T ss_pred CceEEEEeCCCCCCcchHHHHHHHHHHHHHh--ccCcEEEEEEeccccCCccHHHHHHHHhhcCCC-eEEEEEcccc
Confidence 38999999995432111 1112222 689999999987763333555666777664445 4588999984
No 219
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.03 E-value=0.0017 Score=54.91 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=43.0
Q ss_pred cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
..++.|...+.. ....+..+.|.+|+|||+++..+|...+ ..+.+|+++|++
T Consensus 7 tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~--~~~~~v~yi~~e 60 (225)
T PRK09361 7 TGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAA--KNGKKVIYIDTE 60 (225)
T ss_pred CCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEECC
Confidence 455666666643 2466788889999999999999999999 789999999998
No 220
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.02 E-value=0.0078 Score=48.29 Aligned_cols=73 Identities=23% Similarity=0.184 Sum_probs=49.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh---hhhccccccccccccCCCCcceeccCeEE
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM---PRMMGLLNEQVHQSASGWSPVFLEENLSV 122 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l---~~~lg~~~~~~~~~~~~~~~~~~~~~l~~ 122 (294)
+..++++ |.+|+||||+...||..=. ..+..|.+.+.+...-+- ..+.+.+...+++++..++.+..-+|+.+
T Consensus 36 Ge~vaiV-G~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~l 111 (228)
T COG4181 36 GETVAIV-GPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL 111 (228)
T ss_pred CceEEEE-cCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccc
Confidence 4557777 7788999999999999877 788899999887654332 22334444455666666655555555543
No 221
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.01 E-value=0.006 Score=53.37 Aligned_cols=48 Identities=25% Similarity=0.266 Sum_probs=37.5
Q ss_pred HHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 39 VKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 39 i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
.|..+......+.-+.|..|+||||+...+...|. .. .++.+++.|..
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~--~~-~~~~VI~gD~~ 142 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK--DS-VPCAVIEGDQQ 142 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc--cC-CCEEEECCCcC
Confidence 34455555666666778899999999999999998 44 68999988864
No 222
>PRK09165 replicative DNA helicase; Provisional
Probab=97.00 E-value=0.00073 Score=64.04 Aligned_cols=58 Identities=22% Similarity=0.425 Sum_probs=44.3
Q ss_pred CcChHHHHhhhccC-ceEEEEEecCCCchHHHHHHHHHHHHhhcC-------------CCCcEEEEecCCCC
Q psy11347 33 DPGIELVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVLAKSN-------------ESVDVGVLDLDICG 90 (294)
Q Consensus 33 ~~~~~~i~~~~~~~-~~~i~v~s~kGGvGKTTia~~LA~~la~~~-------------~g~~VlliD~D~~~ 90 (294)
...++.|...+... ...+.++++..|+||||++.++|...++.. .|.+|+++-+....
T Consensus 201 ~TG~~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~ 272 (497)
T PRK09165 201 STGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSA 272 (497)
T ss_pred cCChHHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCH
Confidence 45667777766543 567889999999999999999999987211 27889999887654
No 223
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.00 E-value=0.0045 Score=57.93 Aligned_cols=53 Identities=28% Similarity=0.320 Sum_probs=42.9
Q ss_pred cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
..++.+.+.+.. ....+..+.|..|+||||++..+|..++ ..+.+|++++...
T Consensus 64 TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ee 118 (446)
T PRK11823 64 TGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEE 118 (446)
T ss_pred CCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccc
Confidence 445566665543 3466888889999999999999999999 7899999999864
No 224
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.00073 Score=56.58 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=29.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
+..+-|.+|+||||+...|+..+. ....+|.+-+-+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 63 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDV 63 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCcc
Confidence 556669999999999999999888 6677887765544
No 225
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=96.97 E-value=0.0075 Score=59.69 Aligned_cols=65 Identities=17% Similarity=0.072 Sum_probs=46.7
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.++|+|+... ........+ ..+|.+++|++....--.....++..+.+.+.+.+ +++|++|.
T Consensus 75 ~~i~liDTPG~~~-~~~~~~~~l--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~ 139 (689)
T TIGR00484 75 HRINIIDTPGHVD-FTVEVERSL--RVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRI-AFVNKMDK 139 (689)
T ss_pred eEEEEEECCCCcc-hhHHHHHHH--HHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEE-EEEECCCC
Confidence 8899999996543 222344444 57899999998766444456677777888888864 79999984
No 226
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.96 E-value=0.0014 Score=55.88 Aligned_cols=40 Identities=33% Similarity=0.474 Sum_probs=30.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 64 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDI 64 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEc
Confidence 344555559999999999999999988 6677777654443
No 227
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.96 E-value=0.003 Score=54.01 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=30.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 66 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDL 66 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeec
Confidence 444556669999999999999999988 6677787655544
No 228
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.96 E-value=0.0008 Score=56.62 Aligned_cols=40 Identities=35% Similarity=0.428 Sum_probs=30.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 68 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDI 68 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEeh
Confidence 344555559999999999999999988 6777787655443
No 229
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.95 E-value=0.0012 Score=56.36 Aligned_cols=40 Identities=33% Similarity=0.332 Sum_probs=30.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 64 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDI 64 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEEC
Confidence 344555559999999999999999887 6667777655444
No 230
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.95 E-value=0.00068 Score=56.96 Aligned_cols=40 Identities=28% Similarity=0.422 Sum_probs=30.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+.|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 67 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDL 67 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeh
Confidence 334555559999999999999999988 6677787655443
No 231
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=96.94 E-value=0.0078 Score=50.90 Aligned_cols=66 Identities=20% Similarity=0.058 Sum_probs=47.3
Q ss_pred CccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 159 GLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 159 ~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
.|.+.|+|+|+.... ...+...+ ..+|.+++|++........+...++.....+.+ .-+++|+++.
T Consensus 72 ~~~i~iiDTPG~~~f-~~~~~~~l--~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD~ 137 (222)
T cd01885 72 EYLINLIDSPGHVDF-SSEVTAAL--RLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKIDR 137 (222)
T ss_pred ceEEEEECCCCcccc-HHHHHHHH--HhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCc
Confidence 388999999965432 22333444 579999999988775555667777777767776 5689999983
No 232
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=96.93 E-value=0.0018 Score=60.70 Aligned_cols=52 Identities=29% Similarity=0.218 Sum_probs=46.1
Q ss_pred CceEEEEEecCC---CchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc
Q psy11347 46 VKHKVLVLSGKG---GVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE 102 (294)
Q Consensus 46 ~~~~i~v~s~kG---GvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~ 102 (294)
..++|.|++.-. |.||||++.+||..|+ +.|++| +|+ ...+++...||....
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la--~~Gk~~--i~~-LR~Pslg~~fg~kgg 107 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLN--ALGQKV--CAC-IRQPSMGPVFGVKGG 107 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHH--HhCCce--EEE-eccCCcCCccCCCCC
Confidence 479999999888 9999999999999999 899999 777 888898888877654
No 233
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.92 E-value=0.0064 Score=50.35 Aligned_cols=117 Identities=12% Similarity=0.194 Sum_probs=78.1
Q ss_pred HHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcc
Q psy11347 37 ELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPV 114 (294)
Q Consensus 37 ~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~ 114 (294)
+.|.+|++. .-..+..+=|..|.|||.++.-+++-+- +.|++|.++-+... ...++.... .-.....+.
T Consensus 15 delDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L--~~g~~v~yvsTe~T---~refi~qm~----sl~ydv~~~ 85 (235)
T COG2874 15 DELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFL--MNGYRVTYVSTELT---VREFIKQME----SLSYDVSDF 85 (235)
T ss_pred HHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHH--hCCceEEEEEechh---HHHHHHHHH----hcCCCchHH
Confidence 455667776 3466777779999999999999999999 89999999987542 222221111 011122334
Q ss_pred eeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCC
Q psy11347 115 FLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPP 169 (294)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~ 169 (294)
.....+.++|.......+ ........+..+++..+..+ +|+||||.=.
T Consensus 86 ~l~G~l~~~~~~~~~~~~------~~~~~~~~L~~l~~~~k~~~-~dViIIDSls 133 (235)
T COG2874 86 LLSGRLLFFPVNLEPVNW------GRRSARKLLDLLLEFIKRWE-KDVIIIDSLS 133 (235)
T ss_pred HhcceeEEEEeccccccc------ChHHHHHHHHHHHhhHHhhc-CCEEEEeccc
Confidence 455778888876443333 33444557777777777555 9999999874
No 234
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.0009 Score=56.92 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=31.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 69 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDL 69 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 444555559999999999999999998 7777887765544
No 235
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.90 E-value=0.024 Score=47.01 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=27.1
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEec
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDL 86 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~ 86 (294)
+.++.|..|+||||+...|+..+. .. +.+++.++-
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~--~~~~~~i~t~e~ 38 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN--KNKTHHILTIED 38 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh--hcCCcEEEEEcC
Confidence 567779999999999999998887 43 456665544
No 236
>PRK08760 replicative DNA helicase; Provisional
Probab=96.90 E-value=0.0005 Score=64.76 Aligned_cols=57 Identities=18% Similarity=0.340 Sum_probs=43.7
Q ss_pred CcChHHHHhhhccC-ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 33 DPGIELVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 33 ~~~~~~i~~~~~~~-~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
....+.|...+... ..-+.++++..|+|||+++.++|...+ ...|++|+++-+....
T Consensus 213 ~TG~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a-~~~g~~V~~fSlEMs~ 270 (476)
T PRK08760 213 PTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAA-IKSKKGVAVFSMEMSA 270 (476)
T ss_pred cCCcHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHH-HhcCCceEEEeccCCH
Confidence 34556666555443 467889999999999999999999887 1358899999887643
No 237
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.89 E-value=0.0029 Score=54.18 Aligned_cols=40 Identities=25% Similarity=0.368 Sum_probs=30.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDI 66 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEh
Confidence 333455558999999999999999987 6677787654443
No 238
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.89 E-value=0.0035 Score=50.63 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=28.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
|-+. +..|.||||.|..+|...+ ..|++|+++-+
T Consensus 8 i~v~-~g~GkGKtt~a~g~a~ra~--~~g~~v~ivQF 41 (173)
T TIGR00708 8 IIVH-TGNGKGKTTAAFGMALRAL--GHGKKVGVIQF 41 (173)
T ss_pred EEEE-CCCCCChHHHHHHHHHHHH--HCCCeEEEEEE
Confidence 4444 4489999999999999999 89999998854
No 239
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.89 E-value=0.0013 Score=55.65 Aligned_cols=53 Identities=23% Similarity=0.228 Sum_probs=38.7
Q ss_pred ChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCCC
Q psy11347 35 GIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDIC 89 (294)
Q Consensus 35 ~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~~ 89 (294)
.++.|.+.+.. ....+..+.|..|+|||+++..++...+ .. |.+|+++.++..
T Consensus 4 GI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~--~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 4 GIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGL--KNFGEKVLYVSFEEP 59 (226)
T ss_dssp SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHH--HHHT--EEEEESSS-
T ss_pred CchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhh--hhcCCcEEEEEecCC
Confidence 34555555633 3456777779999999999999998877 67 999999999764
No 240
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.0029 Score=52.96 Aligned_cols=44 Identities=30% Similarity=0.401 Sum_probs=32.4
Q ss_pred hccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 43 LSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 43 ~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
++-....+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 19 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~ 62 (211)
T cd03298 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDV 62 (211)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 3334455666669999999999999999988 6677787644443
No 241
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.88 E-value=0.0013 Score=53.72 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=32.7
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
..++|..|+||||+|..|+..+. ..|.++.++..|-.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~--~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR--VNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEehhhc
Confidence 45678999999999999999999 78999999988854
No 242
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.88 E-value=0.0022 Score=54.90 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=30.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+.|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDI 67 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 334455558999999999999999988 6677787755544
No 243
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.87 E-value=0.001 Score=60.05 Aligned_cols=41 Identities=24% Similarity=0.241 Sum_probs=31.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+..
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 333444459999999999999999998 77778887666553
No 244
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.87 E-value=0.0036 Score=59.71 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=30.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 334455559999999999999999988 6677787654444
No 245
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.87 E-value=0.047 Score=40.75 Aligned_cols=62 Identities=19% Similarity=0.130 Sum_probs=39.9
Q ss_pred ccEEEEcCCCCCCh--------HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEecc
Q psy11347 160 LEYLLIDTPPGTSD--------EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENM 225 (294)
Q Consensus 160 yd~IiiD~p~~~~~--------~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~ 225 (294)
..++|+|+|+-... ........+ ..+|.++.+++.+...-.....++++++ ..+.+.+|+|+
T Consensus 47 ~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~--~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~~~~~i~v~NK 116 (116)
T PF01926_consen 47 KKFILVDTPGINDGESQDNDGKEIRKFLEQI--SKSDLIIYVVDASNPITEDDKNILRELK--NKKPIILVLNK 116 (116)
T ss_dssp EEEEEEESSSCSSSSHHHHHHHHHHHHHHHH--CTESEEEEEEETTSHSHHHHHHHHHHHH--TTSEEEEEEES
T ss_pred eeEEEEeCCCCcccchhhHHHHHHHHHHHHH--HHCCEEEEEEECCCCCCHHHHHHHHHHh--cCCCEEEEEcC
Confidence 57799999965432 111344444 6899999999876633345566667775 44446788885
No 246
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.87 E-value=0.0013 Score=51.99 Aligned_cols=37 Identities=38% Similarity=0.394 Sum_probs=32.4
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
.++.|..|+||||++..|+..+. ..+.++.++|.|..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~--~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF--QRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEEcCHHH
Confidence 45679999999999999999999 78889999987753
No 247
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.86 E-value=0.0057 Score=59.95 Aligned_cols=168 Identities=17% Similarity=0.125 Sum_probs=0.0
Q ss_pred hHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCc---------------------EEEEecCCCCCChh
Q psy11347 36 IELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVD---------------------VGVLDLDICGPSMP 94 (294)
Q Consensus 36 ~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~---------------------VlliD~D~~~~~l~ 94 (294)
+.+..........+=.++-|..++||||+...|..... .-..+ ..+.|..+.
T Consensus 12 ~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~--~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~----- 84 (632)
T PRK05506 12 ILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSK--MIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAA----- 84 (632)
T ss_pred HHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHH-----
Q ss_pred hhccccccccccccCCCCcceeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH
Q psy11347 95 RMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE 174 (294)
Q Consensus 95 ~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~ 174 (294)
....++.+-.......... +.++|+|+| |....
T Consensus 85 --------------------E~~rg~Tid~~~~~~~~~~--------------------------~~~~liDtP-G~~~f 117 (632)
T PRK05506 85 --------------------EREQGITIDVAYRYFATPK--------------------------RKFIVADTP-GHEQY 117 (632)
T ss_pred --------------------HHhCCcCceeeeeEEccCC--------------------------ceEEEEECC-ChHHH
Q ss_pred HHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhc
Q psy11347 175 HLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAEL 254 (294)
Q Consensus 175 ~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (294)
.-.+...+ ..+|.+++|++........+...+..+...+.+.+-+++|++|.. ++..+........+.++.+.+
T Consensus 118 ~~~~~~~~--~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~----~~~~~~~~~i~~~i~~~~~~~ 191 (632)
T PRK05506 118 TRNMVTGA--STADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLV----DYDQEVFDEIVADYRAFAAKL 191 (632)
T ss_pred HHHHHHHH--HhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccc----cchhHHHHHHHHHHHHHHHHc
Q ss_pred CCceeeccC
Q psy11347 255 SVPFLGSVP 263 (294)
Q Consensus 255 g~~~l~~Ip 263 (294)
+..-..+||
T Consensus 192 ~~~~~~iip 200 (632)
T PRK05506 192 GLHDVTFIP 200 (632)
T ss_pred CCCCccEEE
No 248
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.86 E-value=0.00091 Score=56.28 Aligned_cols=40 Identities=30% Similarity=0.343 Sum_probs=30.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+.|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDV 69 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEc
Confidence 344555558899999999999999887 6677887755444
No 249
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.86 E-value=0.0067 Score=49.02 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=29.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
...+..+.|.+|+||||+...|+..+. ....+|.+-+.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~ 64 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGV 64 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCE
Confidence 444556669999999999999999988 66677765443
No 250
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.86 E-value=0.0056 Score=57.17 Aligned_cols=65 Identities=20% Similarity=0.091 Sum_probs=39.8
Q ss_pred ccEEEEcCCCCCC-hH-----HH-HHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347 160 LEYLLIDTPPGTS-DE-----HL-SLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMAT 227 (294)
Q Consensus 160 yd~IiiD~p~~~~-~~-----~~-~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~ 227 (294)
+++.|+|+|+... .. .. ....++ ..+|.+|++++....-...-..+.+++++.+.+ +.+|+|++|
T Consensus 49 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~D 120 (435)
T PRK00093 49 REFILIDTGGIEPDDDGFEKQIREQAELAI--EEADVILFVVDGRAGLTPADEEIAKILRKSNKP-VILVVNKVD 120 (435)
T ss_pred cEEEEEECCCCCCcchhHHHHHHHHHHHHH--HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCc-EEEEEECcc
Confidence 6789999996443 11 11 112223 579999999887653222223455666666666 558999988
No 251
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=96.85 E-value=0.0081 Score=47.46 Aligned_cols=66 Identities=15% Similarity=0.024 Sum_probs=39.9
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.++|+|+... ........+ ..+|.+++|.+.+..........+..++..+.+.+-+++|++|.
T Consensus 51 ~~~~~~DtpG~~~-~~~~~~~~~--~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl 116 (164)
T cd04171 51 KRLGFIDVPGHEK-FIKNMLAGA--GGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADL 116 (164)
T ss_pred cEEEEEECCChHH-HHHHHHhhh--hcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccc
Confidence 6789999995321 111222223 57999999998765322333344444555555456789999883
No 252
>COG2403 Predicted GTPase [General function prediction only]
Probab=96.85 E-value=0.0049 Score=54.95 Aligned_cols=39 Identities=31% Similarity=0.406 Sum_probs=36.3
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
...+|.+++..-|+|||+++.-+|+.|+ .+|+||+++-.
T Consensus 125 ekPviaV~atrtg~GKsaVS~~v~r~l~--ergyrv~vVrh 163 (449)
T COG2403 125 EKPVIAVTATRTGVGKSAVSRYVARLLR--ERGYRVCVVRH 163 (449)
T ss_pred cCceEEEEEeccccchhHHHHHHHHHHH--HcCCceEEEec
Confidence 3578999999999999999999999999 99999999966
No 253
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.85 E-value=0.0038 Score=59.11 Aligned_cols=55 Identities=11% Similarity=0.228 Sum_probs=46.8
Q ss_pred CcChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 33 DPGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 33 ~~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
...++.+.+.+.. ....+.+++|..|+||||++..++...+ .+|.+|+++-.+..
T Consensus 246 ~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~--~~ge~~~y~s~eEs 302 (484)
T TIGR02655 246 SSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC--ANKERAILFAYEES 302 (484)
T ss_pred CCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEeeCC
Confidence 4566777777766 3677888999999999999999999999 88999999988764
No 254
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=96.84 E-value=0.029 Score=45.13 Aligned_cols=64 Identities=19% Similarity=0.143 Sum_probs=38.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchh-hHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEV-SLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~-s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+.... .......+ ..+|.+|++.+.... +.... ..+..+...+.+ +.+|+|+.|.
T Consensus 67 ~~~~l~Dt~G~~~~-~~~~~~~~--~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~~~~~-iiiv~NK~Dl 131 (179)
T cd01890 67 YLLNLIDTPGHVDF-SYEVSRSL--AACEGALLLVDATQGVEAQTL-ANFYLALENNLE-IIPVINKIDL 131 (179)
T ss_pred EEEEEEECCCChhh-HHHHHHHH--HhcCeEEEEEECCCCccHhhH-HHHHHHHHcCCC-EEEEEECCCC
Confidence 78999999964321 12222333 579999999987652 22222 222333345565 5689999883
No 255
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.84 E-value=0.0064 Score=56.99 Aligned_cols=53 Identities=25% Similarity=0.334 Sum_probs=42.3
Q ss_pred cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
..++.+.+.+.. ....+.+++|..|+||||++..+|..++ ..|.+|++++...
T Consensus 78 TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a--~~g~kvlYvs~EE 132 (454)
T TIGR00416 78 SGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA--KNQMKVLYVSGEE 132 (454)
T ss_pred cCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEECcC
Confidence 345555555532 4567888999999999999999999999 7788999999864
No 256
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.84 E-value=0.0072 Score=59.83 Aligned_cols=41 Identities=34% Similarity=0.348 Sum_probs=33.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
+..++++ |++|+||||+...|+..+. ....+|.+-+.|...
T Consensus 479 Ge~vaIv-G~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~ 519 (686)
T TIGR03797 479 GEFVAIV-GPSGSGKSTLLRLLLGFET--PESGSVFYDGQDLAG 519 (686)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcCc
Confidence 5556665 8999999999999999999 788889887766654
No 257
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=96.83 E-value=0.0094 Score=49.10 Aligned_cols=65 Identities=15% Similarity=0.069 Sum_probs=42.2
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+... ........+ ..+|.+++|++...........++..+...+.+ ..+++|++|.
T Consensus 65 ~~~~l~DtpG~~~-~~~~~~~~~--~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl 129 (194)
T cd01891 65 TKINIVDTPGHAD-FGGEVERVL--SMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDR 129 (194)
T ss_pred EEEEEEECCCcHH-HHHHHHHHH--HhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECCCC
Confidence 7899999996432 111222223 578999999987654444445556666566777 4688999983
No 258
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=96.83 E-value=0.00092 Score=59.43 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=31.0
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
+..+-|.+|+||||+...|+..+. ....+|.+.+.|+.
T Consensus 35 i~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~ 72 (306)
T PRK13537 35 CFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVP 72 (306)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecc
Confidence 444448899999999999999988 77778888777664
No 259
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.82 E-value=0.0077 Score=47.17 Aligned_cols=66 Identities=20% Similarity=0.111 Sum_probs=40.8
Q ss_pred ccEEEEcCCCCCChHH------H-HHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEH------L-SLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~------~-~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+++.++|+|+...... . .....+ ..+|.++++++...........+.+.++..+.+ +.+|+|+.+.
T Consensus 45 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~ 117 (157)
T cd01894 45 REFILIDTGGIEPDDEGISKEIREQAELAI--EEADVILFVVDGREGLTPADEEIAKYLRKSKKP-VILVVNKVDN 117 (157)
T ss_pred eEEEEEECCCCCCchhHHHHHHHHHHHHHH--HhCCEEEEEEeccccCCccHHHHHHHHHhcCCC-EEEEEECccc
Confidence 7899999997544211 0 111222 578999999877543222233455666666655 5689999883
No 260
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.82 E-value=0.0014 Score=55.01 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=30.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 64 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDV 64 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 344555569999999999999999888 6677787655443
No 261
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.81 E-value=0.0017 Score=55.33 Aligned_cols=40 Identities=28% Similarity=0.345 Sum_probs=31.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 444555669999999999999999988 6677887755554
No 262
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.81 E-value=0.0013 Score=55.17 Aligned_cols=40 Identities=33% Similarity=0.473 Sum_probs=30.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.|.
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 66 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDV 66 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 344555559999999999999999987 6677887765554
No 263
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=96.81 E-value=0.0013 Score=61.35 Aligned_cols=57 Identities=19% Similarity=0.319 Sum_probs=44.4
Q ss_pred CcChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 33 DPGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 33 ~~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
....+.|...+.. ....+.++++..|+|||+++.++|..++ ...|++|+++-++...
T Consensus 179 ~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a-~~~g~~vl~~SlEm~~ 236 (434)
T TIGR00665 179 PTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAA-IKEGKPVAFFSLEMSA 236 (434)
T ss_pred cCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHH-HhCCCeEEEEeCcCCH
Confidence 4556666665543 3566889999999999999999999987 1368999999888654
No 264
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.81 E-value=0.0025 Score=61.75 Aligned_cols=40 Identities=30% Similarity=0.444 Sum_probs=31.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
+..++++ |++|+||||+...|+..+. ....+|.+-+.|..
T Consensus 369 G~~~aIv-G~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 408 (582)
T PRK11176 369 GKTVALV-GRSGSGKSTIANLLTRFYD--IDEGEILLDGHDLR 408 (582)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhccC--CCCceEEECCEEhh
Confidence 4455555 8999999999999999999 77888887665543
No 265
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=96.80 E-value=0.0065 Score=58.89 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=34.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
++++.|+ |..|+||||+...|...|. .+|+||..|..|-.
T Consensus 10 ~~vi~iv-G~s~sGKTTlie~li~~L~--~~G~rVavIKh~~h 49 (597)
T PRK14491 10 IPLLGFC-AYSGTGKTTLLEQLIPELN--QRGLRLAVIKHAHH 49 (597)
T ss_pred ccEEEEE-cCCCCCHHHHHHHHHHHHH--hCCceEEEEEcCCc
Confidence 6777777 4688999999999999999 89999999988643
No 266
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.80 E-value=0.0013 Score=55.40 Aligned_cols=40 Identities=28% Similarity=0.324 Sum_probs=30.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. .....|.+-+.+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSI 66 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEec
Confidence 444555559999999999999999988 6777787654443
No 267
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.80 E-value=0.0011 Score=58.76 Aligned_cols=40 Identities=28% Similarity=0.382 Sum_probs=30.9
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
..+..+-|.+|+||||+...|+..+. ....+|.+-+.|..
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 58 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVV 58 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 33444558899999999999999988 67778887665543
No 268
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.80 E-value=0.0058 Score=58.31 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=44.9
Q ss_pred CcChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCCCC
Q psy11347 33 DPGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDICG 90 (294)
Q Consensus 33 ~~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~~~ 90 (294)
...++.|.+.+.. ....+..+.|..|+|||+++..++...+ .. |.+|+++.++...
T Consensus 14 ~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~--~~~ge~~lyis~ee~~ 72 (509)
T PRK09302 14 PTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGI--KRFDEPGVFVTFEESP 72 (509)
T ss_pred cCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HhcCCCEEEEEccCCH
Confidence 4677888887743 3466777789999999999999998777 55 9999999998653
No 269
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.80 E-value=0.0021 Score=52.81 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=32.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcC----------CCCcEEEEecCCCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSN----------ESVDVGVLDLDICG 90 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~----------~g~~VlliD~D~~~ 90 (294)
..+.++.+.+|+||||++..+|..++ . .+.+|++++++...
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~--~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALA--TGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHH--T---TT---------EEEEESSS-H
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH--hCCccCCcccccCceEEEEeccCCH
Confidence 45888889999999999999999999 5 67899999998754
No 270
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=96.79 E-value=0.054 Score=45.97 Aligned_cols=193 Identities=15% Similarity=0.073 Sum_probs=99.5
Q ss_pred cCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCC-hhhhccccccc--ccc-cc---------CCCCcce--eccC
Q psy11347 55 GKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPS-MPRMMGLLNEQ--VHQ-SA---------SGWSPVF--LEEN 119 (294)
Q Consensus 55 ~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~-l~~~lg~~~~~--~~~-~~---------~~~~~~~--~~~~ 119 (294)
.-+|.||=..|+.++..|. .+|++|..+..||.-+- ...+-.....+ +.. +. +++.... ..+|
T Consensus 9 v~s~lgkgi~~as~g~ll~--~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~l~~~~n 86 (255)
T cd03113 9 VVSSLGKGITAASLGRLLK--ARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTNLSRDNN 86 (255)
T ss_pred cccCcchHHHHHHHHHHHH--HCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCCCcCccC
Confidence 3468999999999999999 99999999999986421 00111111111 111 00 0111100 0111
Q ss_pred eEE-------Ee--cccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh----HHHHHHHHhhcC-
Q psy11347 120 LSV-------MS--IGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD----EHLSLVQYLKGL- 185 (294)
Q Consensus 120 l~~-------~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~----~~~~~~~~l~~~- 185 (294)
+.- +. ......+.. ...-+-....+++.+..+....++|++|++.++..++ .+++.+.++...
T Consensus 87 iTtGkiy~~vi~kER~G~ylG~T---VQviPHit~eIk~~i~~~~~~~~~dv~i~EiGGTvGDiEs~pf~EAirq~~~~~ 163 (255)
T cd03113 87 ITTGKIYSSVIEKERRGDYLGKT---VQVIPHITDEIKERIRRVAEKSGADVVIVEIGGTVGDIESLPFLEAIRQMKLEL 163 (255)
T ss_pred cChHHHHHHHHHHhhccCccCce---EEECcCccHHHHHHHHHhhccCCCCEEEEEeCCccccccccHHHHHHHHHHHHh
Confidence 110 00 000000000 0001122235566666655334599999999977643 344444444221
Q ss_pred CC-cEE-----EEecC--CchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCc
Q psy11347 186 PD-IGA-----IVVTT--PQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVP 257 (294)
Q Consensus 186 ~a-d~v-----liv~~--~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~ 257 (294)
.. +.+ ++|.- .....-.-+...++.++..|+...++|.|.-++ +. .+..+.+...-+++
T Consensus 164 g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse~p----------L~---e~~keKIAlFcnVp 230 (255)
T cd03113 164 GRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKP----------LP---PEIREKIALFCDVP 230 (255)
T ss_pred CcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCCCC----------Cc---hHHHHHHHHhcCCC
Confidence 22 222 22322 223333457888999999999999999988321 11 22334444445788
Q ss_pred eeeccCCC
Q psy11347 258 FLGSVPID 265 (294)
Q Consensus 258 ~l~~Ip~~ 265 (294)
..++|+..
T Consensus 231 ve~VI~~~ 238 (255)
T cd03113 231 PEAVISAP 238 (255)
T ss_pred HHHeeecC
Confidence 77766643
No 271
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.78 E-value=0.0042 Score=53.56 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=31.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHIE 70 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEECC
Confidence 334555559999999999999999988 67778877665543
No 272
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=96.78 E-value=0.0094 Score=54.39 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=35.1
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
++++|.|+ |..|+||||+...|...|. .+|++|.+|-.|..
T Consensus 204 ~~~~~~~~-g~~~~GKtt~~~~l~~~l~--~~g~~v~~iKh~~h 244 (366)
T PRK14489 204 APPLLGVV-GYSGTGKTTLLEKLIPELI--ARGYRIGLIKHSHH 244 (366)
T ss_pred CccEEEEe-cCCCCCHHHHHHHHHHHHH--HcCCEEEEEEECCc
Confidence 46677776 5788999999999999999 89999999987654
No 273
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.78 E-value=0.0011 Score=59.77 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=31.5
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
.+..+-|.+|+||||+...|+..+. .....|.+.+.|..
T Consensus 68 ei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~~ 106 (340)
T PRK13536 68 ECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPVP 106 (340)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEECC
Confidence 3444558999999999999999998 77778888776654
No 274
>PRK05973 replicative DNA helicase; Provisional
Probab=96.78 E-value=0.0022 Score=54.63 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=37.7
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
....+.+++|..|+|||+++.++|...+ ..|.+|+++.++...
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~Ge~vlyfSlEes~ 104 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAM--KSGRTGVFFTLEYTE 104 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEEeCCH
Confidence 3566888899999999999999999998 779999999998653
No 275
>PRK13351 elongation factor G; Reviewed
Probab=96.77 E-value=0.015 Score=57.66 Aligned_cols=86 Identities=19% Similarity=0.030 Sum_probs=57.7
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i 239 (294)
+.+.|+|+|+... ....+...+ ..+|.+++|++............+..+...+.+.+ +++|+.+.. .
T Consensus 73 ~~i~liDtPG~~d-f~~~~~~~l--~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D~~------~--- 139 (687)
T PRK13351 73 HRINLIDTPGHID-FTGEVERSL--RVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRL-IFINKMDRV------G--- 139 (687)
T ss_pred EEEEEEECCCcHH-HHHHHHHHH--HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEECCCCC------C---
Confidence 8899999996532 222233334 57899999998876555556677777777788854 799998831 1
Q ss_pred CCCCchhHHHHHhhcCCcee
Q psy11347 240 FPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 240 ~~~~~~~~~~~~~~~g~~~l 259 (294)
.+....++++.+.++.+..
T Consensus 140 -~~~~~~~~~i~~~l~~~~~ 158 (687)
T PRK13351 140 -ADLFKVLEDIEERFGKRPL 158 (687)
T ss_pred -CCHHHHHHHHHHHHCCCeE
Confidence 2234566777777776554
No 276
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.76 E-value=0.0015 Score=54.67 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=30.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ..+.+|.+-+.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~ 64 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDV 64 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 344555559999999999999999987 6677787755443
No 277
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.75 E-value=0.021 Score=48.40 Aligned_cols=63 Identities=6% Similarity=0.007 Sum_probs=43.9
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
..++++|+|+.+ ..++..+ ..+|.++++++...........++..+...+.+.+.+|+|+.|.
T Consensus 83 ~~i~~vDtPg~~----~~~l~~a--k~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~ 145 (225)
T cd01882 83 RRLTFIECPNDI----NAMIDIA--KVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDL 145 (225)
T ss_pred ceEEEEeCCchH----HHHHHHH--HhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 568999999644 2233333 57899999988765444445667777777787765579999883
No 278
>PRK08233 hypothetical protein; Provisional
Probab=96.75 E-value=0.0019 Score=52.48 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=26.9
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.+.++.|.+|+||||+|..|+..|. . ..++..|.+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~--~--~~~~~~d~~~ 39 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK--N--SKALYFDRYD 39 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC--C--CceEEECCEE
Confidence 4444455669999999999999887 3 3677777764
No 279
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.74 E-value=0.0013 Score=55.18 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=30.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i 65 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDV 65 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 344555558999999999999999988 6677787655443
No 280
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.74 E-value=0.0053 Score=49.96 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=28.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD 85 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD 85 (294)
...+..+.|.+|+||||+...|+..+. ....+|.+-+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g 63 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK--PQQGEITLDG 63 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECC
Confidence 344556669999999999999999988 6666776543
No 281
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.73 E-value=0.01 Score=50.04 Aligned_cols=53 Identities=19% Similarity=0.161 Sum_probs=40.3
Q ss_pred ChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCC------CcEEEEecCCC
Q psy11347 35 GIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNES------VDVGVLDLDIC 89 (294)
Q Consensus 35 ~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g------~~VlliD~D~~ 89 (294)
.++.|...+.. ....+..+.|..|+|||+++..+|.... ..+ .+|+++|.+..
T Consensus 4 G~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~--~~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 4 GSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQ--LPGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred CcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhh--cccccCCCcceEEEEecCCC
Confidence 34555555542 3456777778999999999999999987 666 89999999753
No 282
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.73 E-value=0.0051 Score=58.61 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=30.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcC--CCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSN--ESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~--~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. . ...+|.+-+.+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 30 AGEIVSLCGENGAGKSTLMKVLSGVYP--HGTYEGEIIFEGEEL 71 (506)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC--CCCCCeEEEECCEEC
Confidence 444556669999999999999999877 4 466787755554
No 283
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.72 E-value=0.003 Score=61.43 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=31.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
+..++++ |.+|+||||+...|+..+. ..+.+|.+-+.|..
T Consensus 367 Ge~iaIv-G~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i~ 406 (592)
T PRK10790 367 RGFVALV-GHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPLS 406 (592)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhcccC--CCCceEEECCEEhh
Confidence 4555555 8899999999999999999 77778887666554
No 284
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.72 E-value=0.0014 Score=54.76 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=28.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~ 62 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGK 62 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCC
Confidence 444555569999999999999999887 66667765443
No 285
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.70 E-value=0.009 Score=51.03 Aligned_cols=54 Identities=24% Similarity=0.219 Sum_probs=42.3
Q ss_pred ChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 35 GIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 35 ~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
.++.|.+.+.. ....+..+.|..|+|||+++..++.... ..|.+|+++.++...
T Consensus 6 Gi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee~~ 61 (237)
T TIGR03877 6 GIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGIYVALEEHP 61 (237)
T ss_pred CcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeCCH
Confidence 45556655543 3566778889999999999999998877 689999999998643
No 286
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.70 E-value=0.0022 Score=55.02 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=32.1
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
-.++.|++|+|||+++.++|..+. ..|++|+++++
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it~ 135 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIITV 135 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEH
Confidence 577889999999999999999999 88999999965
No 287
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=96.70 E-value=0.0067 Score=56.53 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=43.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch--hhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE--VSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~--~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+.-. ..-.+...+ ..+|.+++|++.+. .-.......+..+...+.+.+.+++|++|.
T Consensus 84 ~~i~liDtpG~~~-~~~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl 151 (425)
T PRK12317 84 YYFTIVDCPGHRD-FVKNMITGA--SQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDA 151 (425)
T ss_pred eEEEEEECCCccc-chhhHhhch--hcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 8999999996432 111222223 57999999988765 222334455556666676667789999984
No 288
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.69 E-value=0.0026 Score=63.20 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=32.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
+..++++ |++|+||||+...|+..+. ....++++-+.|..
T Consensus 500 G~~vaIv-G~SGsGKSTLlklL~gl~~--p~~G~I~idg~~i~ 539 (708)
T TIGR01193 500 NSKTTIV-GMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFSLK 539 (708)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhccCC--CCCcEEEECCEEHH
Confidence 4555555 8999999999999999999 77888888666654
No 289
>PRK15453 phosphoribulokinase; Provisional
Probab=96.69 E-value=0.003 Score=54.91 Aligned_cols=41 Identities=20% Similarity=0.425 Sum_probs=34.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
..+|+| .|.+|+||||++..|+..|. ..+.++.+++.|...
T Consensus 5 ~piI~I-tG~SGsGKTTva~~l~~if~--~~~~~~~vi~~D~yh 45 (290)
T PRK15453 5 HPIIAV-TGSSGAGTTTVKRAFEKIFR--RENINAAVVEGDSFH 45 (290)
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHHHh--hcCCCeEEEeccccc
Confidence 445555 58889999999999999999 778889999999754
No 290
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.69 E-value=0.0032 Score=52.56 Aligned_cols=40 Identities=23% Similarity=0.281 Sum_probs=34.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+.|.+|+|||+++..++.... ..|.+|+++|++.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCC
Confidence 355667778999999999999999998 7899999999974
No 291
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.69 E-value=0.0074 Score=57.31 Aligned_cols=40 Identities=28% Similarity=0.395 Sum_probs=30.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+-+.
T Consensus 23 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 62 (491)
T PRK10982 23 PHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEI 62 (491)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEEC
Confidence 344555569999999999999999988 6677777655443
No 292
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.68 E-value=0.0027 Score=54.90 Aligned_cols=40 Identities=25% Similarity=0.401 Sum_probs=30.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 65 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPV 65 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 344555559999999999999999887 6677787644443
No 293
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.0047 Score=51.22 Aligned_cols=44 Identities=34% Similarity=0.366 Sum_probs=31.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCC-----CcEEEEecCCCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNES-----VDVGVLDLDICGPS 92 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g-----~~VlliD~D~~~~~ 92 (294)
.+.|+.+-|.+|+||||+...|-+.-- ... .+|++-+-|...+.
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lNRmnd--l~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLNRMND--LIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHHhhcc--cCcCceEEEEEEECCeeccCCC
Confidence 444555558899999999999988765 322 46777777766553
No 294
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.67 E-value=0.003 Score=61.04 Aligned_cols=41 Identities=29% Similarity=0.456 Sum_probs=32.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
......+.|+.|+||||+...|+..+. ....+|.+-+.|..
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~--~~~G~I~i~g~~i~ 397 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDGHDLA 397 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEeHH
Confidence 333444559999999999999999999 78888988776644
No 295
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.67 E-value=0.0022 Score=57.53 Aligned_cols=71 Identities=24% Similarity=0.214 Sum_probs=50.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEE
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSV 122 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~ 122 (294)
...+..+-|.+|+||||+-..+|..-. ..+.++.+-+-|... .-.-..+...++++.+.++++...+|+-+
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i~~---lpp~kR~ig~VFQ~YALFPHltV~~NVaf 100 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDITD---VPPEKRPIGMVFQSYALFPHMTVEENVAF 100 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCC---CChhhcccceeecCcccCCCCcHHHHhhh
Confidence 334555568899999999999999999 889999998888754 11111223356677777777777766544
No 296
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.67 E-value=0.0015 Score=59.39 Aligned_cols=42 Identities=26% Similarity=0.382 Sum_probs=33.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+-|...
T Consensus 18 ~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~ 59 (363)
T TIGR01186 18 KGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMK 59 (363)
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 444566669999999999999999999 788888876655543
No 297
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=96.67 E-value=0.046 Score=45.17 Aligned_cols=66 Identities=17% Similarity=0.079 Sum_probs=42.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhcC-CCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKVN-IPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~~-~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+......+ ....+ ..+|.++++.+.+ ..++..+..++..+.... ...+.+|.|++|.
T Consensus 55 ~~l~l~D~~G~~~~~~~-~~~~~--~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl 122 (199)
T cd04110 55 VKLQIWDTAGQERFRTI-TSTYY--RGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDD 122 (199)
T ss_pred EEEEEEeCCCchhHHHH-HHHHh--CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 56889999864321111 11222 5688888888774 477777777777776532 2235688899884
No 298
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.66 E-value=0.0027 Score=53.89 Aligned_cols=40 Identities=33% Similarity=0.428 Sum_probs=30.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 64 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDI 64 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 344555558999999999999999998 7777887755444
No 299
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.65 E-value=0.0021 Score=54.78 Aligned_cols=40 Identities=30% Similarity=0.478 Sum_probs=30.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i 65 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDL 65 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEc
Confidence 334555558999999999999999888 6677787755443
No 300
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.65 E-value=0.0018 Score=54.56 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=29.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 64 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDV 64 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEec
Confidence 344555559999999999999999887 6666777654443
No 301
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.65 E-value=0.0063 Score=50.65 Aligned_cols=40 Identities=28% Similarity=0.473 Sum_probs=30.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 64 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPI 64 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEh
Confidence 344555669999999999999999988 6677777655443
No 302
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.64 E-value=0.0031 Score=58.12 Aligned_cols=41 Identities=32% Similarity=0.492 Sum_probs=32.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.|..
T Consensus 53 ~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~ 93 (400)
T PRK10070 53 EGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIA 93 (400)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECC
Confidence 344566669999999999999999998 77778877655543
No 303
>PRK10908 cell division protein FtsE; Provisional
Probab=96.64 E-value=0.0019 Score=54.47 Aligned_cols=40 Identities=25% Similarity=0.360 Sum_probs=30.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+-+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i 66 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDI 66 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEc
Confidence 334555558999999999999999887 6677777654443
No 304
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.64 E-value=0.0019 Score=54.42 Aligned_cols=39 Identities=28% Similarity=0.305 Sum_probs=29.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~ 67 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEP 67 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 344555569999999999999999887 666777664433
No 305
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.63 E-value=0.0043 Score=61.68 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=31.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
+..++++ |++|+||||+...|+..+. ..+.+|++-+.|.
T Consensus 507 Ge~vaIv-G~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i 545 (711)
T TIGR00958 507 GEVVALV-GPSGSGKSTVAALLQNLYQ--PTGGQVLLDGVPL 545 (711)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhccC--CCCCEEEECCEEH
Confidence 4555555 8999999999999999999 7788888755554
No 306
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.63 E-value=0.005 Score=50.35 Aligned_cols=41 Identities=39% Similarity=0.448 Sum_probs=34.4
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.+..+.++.|..|+||||++..|+..+. ..|..+.++|.|.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~--~~~~~~~~l~~d~ 56 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLE--SKGYRVYVLDGDN 56 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECChH
Confidence 3455667778889999999999999998 7888889998775
No 307
>PRK05748 replicative DNA helicase; Provisional
Probab=96.63 E-value=0.0021 Score=60.28 Aligned_cols=57 Identities=18% Similarity=0.392 Sum_probs=44.4
Q ss_pred CcChHHHHhhhccC-ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 33 DPGIELVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 33 ~~~~~~i~~~~~~~-~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
...++.|...+... ...+.++++..|+|||+++.++|...+ ...|.+|+++-+....
T Consensus 187 ~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a-~~~g~~v~~fSlEms~ 244 (448)
T PRK05748 187 PTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVA-TKTDKNVAIFSLEMGA 244 (448)
T ss_pred cCChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHH-HhCCCeEEEEeCCCCH
Confidence 45566666655543 566889999999999999999999987 1459999999887654
No 308
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=96.63 E-value=0.0023 Score=57.76 Aligned_cols=39 Identities=26% Similarity=0.251 Sum_probs=31.0
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
.+..+-|.+|+||||+...|+..+. ....+|.+-+.|..
T Consensus 32 ei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 32 QIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 3444458999999999999999998 77788887666553
No 309
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=96.62 E-value=0.024 Score=43.85 Aligned_cols=66 Identities=18% Similarity=0.066 Sum_probs=41.6
Q ss_pred ccEEEEcCCCCCChHH------HHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEH------LSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~------~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
++++++|+|+...... ......+ ..+|.++++++...........++......+.+ ..+|+|+++.
T Consensus 45 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~--~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~ 116 (163)
T cd00880 45 GPVVLIDTPGIDEAGGLGREREELARRVL--ERADLILFVVDADLRADEEEEKLLELLRERGKP-VLLVLNKIDL 116 (163)
T ss_pred CcEEEEECCCCCccccchhhHHHHHHHHH--HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCe-EEEEEEcccc
Confidence 7999999996332110 1111222 578988988888775544444445555556666 4599999884
No 310
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.62 E-value=0.0021 Score=55.33 Aligned_cols=36 Identities=44% Similarity=0.749 Sum_probs=32.2
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.++.|-.|+||||+|..|+..+. ..+.+|.+++.|.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~--~~~~~v~~i~~D~ 37 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS--EKNIDVIILGTDL 37 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH--HcCCceEEEccHH
Confidence 56779999999999999999999 7889999998774
No 311
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.62 E-value=0.0059 Score=58.50 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=33.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
+..++++ |+.|+||||+...|+..+. ....+|.+-+.|...
T Consensus 348 G~~~~iv-G~sGsGKSTL~~ll~g~~~--~~~G~I~~~g~~i~~ 388 (529)
T TIGR02857 348 GERVALV-GPSGAGKSTLLNLLLGFVD--PTEGSIAVNGVPLAD 388 (529)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhcCCC--CCCcEEEECCEehhh
Confidence 4555555 8999999999999999999 778889887766544
No 312
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.62 E-value=0.0018 Score=54.51 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=30.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSL 69 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 344555559999999999999999988 7777887655444
No 313
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.62 E-value=0.003 Score=48.26 Aligned_cols=41 Identities=37% Similarity=0.493 Sum_probs=29.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCC-----CCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-----SVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-----g~~VlliD~D~~ 89 (294)
.+.+.++.|..|+|||+++..++..+. .. ..+|+.+++...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 48 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLN--AEAEIKNHPDVIYVNCPSS 48 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHH--HHHHHCCCEEEEEEEHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhH--HhhhccCCCcEEEEEeCCC
Confidence 345778889999999999999999987 43 667888877543
No 314
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.0033 Score=54.38 Aligned_cols=89 Identities=21% Similarity=0.291 Sum_probs=63.9
Q ss_pred cEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccC
Q psy11347 161 EYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIF 240 (294)
Q Consensus 161 d~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~ 240 (294)
-|--+|+|+..+. .-.++.-. +.+|..|+|+..+...+-.+...+-+.++.|++.+-+++|+++.. ...++.
T Consensus 76 hyahVDcPGHaDY-vKNMItgA--aqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmv-----dd~ell 147 (394)
T COG0050 76 HYAHVDCPGHADY-VKNMITGA--AQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMV-----DDEELL 147 (394)
T ss_pred eEEeccCCChHHH-HHHHhhhH--HhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEeccccc-----CcHHHH
Confidence 4678899965532 12222222 578999999988888888888888888999999999999999864 334444
Q ss_pred CCCchhHHHHHhhcCCc
Q psy11347 241 PKDSGGAEKMCAELSVP 257 (294)
Q Consensus 241 ~~~~~~~~~~~~~~g~~ 257 (294)
.-....+.++++.++++
T Consensus 148 elVemEvreLLs~y~f~ 164 (394)
T COG0050 148 ELVEMEVRELLSEYGFP 164 (394)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 44445566777777766
No 315
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.61 E-value=0.014 Score=46.88 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=27.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEE
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV 83 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vll 83 (294)
...+..+.|.+|+||||+...|+..+. ....+|.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~ 60 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGM 60 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEE
Confidence 444555558999999999999999988 66666654
No 316
>KOG0066|consensus
Probab=96.60 E-value=0.011 Score=53.97 Aligned_cols=88 Identities=22% Similarity=0.254 Sum_probs=52.7
Q ss_pred HHHHHHHhhccCCCccEEEEcCCCCC-ChHHHH-HHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEe
Q psy11347 146 MIRQFLSEVDWGNGLEYLLIDTPPGT-SDEHLS-LVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVE 223 (294)
Q Consensus 146 ~l~~~l~~l~~~~~yd~IiiD~p~~~-~~~~~~-~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvv 223 (294)
..+-.+.+|.... +|++|+|.|... +-+.+. +..++.+ .-..||+|+... +++.+.+.. ++||-
T Consensus 710 KaRValaeLal~~-PDvlILDEPTNNLDIESIDALaEAIne-y~GgVi~VsHDe-----------RLi~eT~C~-LwVvE 775 (807)
T KOG0066|consen 710 KARVALAELALGG-PDVLILDEPTNNLDIESIDALAEAINE-YNGGVIMVSHDE-----------RLIVETDCN-LWVVE 775 (807)
T ss_pred hHHHHHHHHhcCC-CCEEEecCCCCCcchhhHHHHHHHHHh-ccCcEEEEeccc-----------ceeeecCce-EEEEc
Confidence 4556666666555 999999999654 322232 2333332 445577777542 222334444 67888
Q ss_pred ccccccCCCCCCCCccCCCCchhHHHHHhhcCC
Q psy11347 224 NMATFVCPKCTKPSEIFPKDSGGAEKMCAELSV 256 (294)
Q Consensus 224 N~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~ 256 (294)
|+ ...+|..++.+.-+++++.+|-
T Consensus 776 ~Q---------~i~eIdGdFeDYkkEVLdaLGE 799 (807)
T KOG0066|consen 776 NQ---------GIDEIDGDFEDYKKEVLDALGE 799 (807)
T ss_pred cC---------ChhhccccHHHHHHHHHHHHHH
Confidence 87 4456666677777777777664
No 317
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.60 E-value=0.0085 Score=49.73 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=28.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHH--hhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVL--AKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~l--a~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+ . ....+|.+-+-+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--p~~G~i~~~g~~~ 66 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHPKYE--VTEGEILFKGEDI 66 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCC--CCccEEEECCEEC
Confidence 33455555899999999999999984 4 4556777654443
No 318
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.0022 Score=55.89 Aligned_cols=39 Identities=28% Similarity=0.402 Sum_probs=29.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~ 87 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQD 87 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEE
Confidence 344555569999999999999999998 667777764443
No 319
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.58 E-value=0.0068 Score=57.73 Aligned_cols=40 Identities=25% Similarity=0.476 Sum_probs=30.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. .....|.+-+.+.
T Consensus 29 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 68 (501)
T PRK10762 29 PGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEV 68 (501)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 344555559999999999999999998 6677787655444
No 320
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.58 E-value=0.0012 Score=55.14 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=30.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 64 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSY 64 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcc
Confidence 344555668999999999999999888 6677787655543
No 321
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.58 E-value=0.0053 Score=61.04 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=33.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
+..++++ |+.|+||||+...|+..+. ....+|.+-+.|...
T Consensus 505 Ge~vaIv-G~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~ 545 (710)
T TIGR03796 505 GQRVALV-GGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIPREE 545 (710)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeHHH
Confidence 5556665 8999999999999999999 778888887666543
No 322
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.57 E-value=0.0038 Score=52.21 Aligned_cols=40 Identities=35% Similarity=0.447 Sum_probs=30.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+-+.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 65 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDL 65 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 344555559999999999999999988 6667777654443
No 323
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.56 E-value=0.0018 Score=53.97 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=28.8
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
.+..+-|.+|+||||+...|+..+. ....+|.+-+.+
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~ 61 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKE 61 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEE
Confidence 3445558999999999999999988 666777765544
No 324
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.55 E-value=0.019 Score=45.08 Aligned_cols=35 Identities=31% Similarity=0.347 Sum_probs=26.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEE
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV 83 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vll 83 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~ 59 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTW 59 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEE
Confidence 444555568999999999999999887 55666654
No 325
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=96.55 E-value=0.016 Score=56.45 Aligned_cols=66 Identities=14% Similarity=0.069 Sum_probs=46.9
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
.-+.|+|+|+.- ...-.+...+ ..+|.+++|++.+..-...+...+..+...+.+.+.+|+|++|.
T Consensus 51 ~~i~~IDtPGhe-~fi~~m~~g~--~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDl 116 (614)
T PRK10512 51 RVLGFIDVPGHE-KFLSNMLAGV--GGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADR 116 (614)
T ss_pred cEEEEEECCCHH-HHHHHHHHHh--hcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 457899999642 1112233333 57999999998877666677777788888888876799999983
No 326
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.55 E-value=0.0069 Score=57.66 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=30.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 68 (501)
T PRK11288 29 AGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM 68 (501)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 344555558999999999999999887 6677787765554
No 327
>PRK08006 replicative DNA helicase; Provisional
Probab=96.55 E-value=0.003 Score=59.44 Aligned_cols=58 Identities=19% Similarity=0.340 Sum_probs=45.1
Q ss_pred CCcChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 32 VDPGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 32 ~~~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
.....+.|...+.. ...-+.++++..|+|||+++.++|..++ ...|++|+++-+....
T Consensus 207 i~TG~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a-~~~g~~V~~fSlEM~~ 265 (471)
T PRK08006 207 VNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAA-MLQDKPVLIFSLEMPG 265 (471)
T ss_pred ccCCCHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-HhcCCeEEEEeccCCH
Confidence 34556667765544 3567899999999999999999999987 2358999999887643
No 328
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.54 E-value=0.0028 Score=55.24 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=29.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~ 70 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGEN 70 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEE
Confidence 344555669999999999999999987 666777765443
No 329
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.54 E-value=0.0037 Score=60.73 Aligned_cols=40 Identities=38% Similarity=0.490 Sum_probs=31.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
+..++++ |++|+||||+...|+..+. .....|.+-+.|..
T Consensus 361 G~~v~Iv-G~sGsGKSTLl~lL~gl~~--p~~G~I~i~g~~i~ 400 (588)
T PRK13657 361 GQTVAIV-GPTGAGKSTLINLLQRVFD--PQSGRILIDGTDIR 400 (588)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEhh
Confidence 4445555 8999999999999999999 77777877665554
No 330
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.53 E-value=0.0032 Score=53.81 Aligned_cols=40 Identities=30% Similarity=0.386 Sum_probs=30.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 65 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKV 65 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 334555559999999999999999988 6677777655443
No 331
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.53 E-value=0.0032 Score=52.71 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=30.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+.|.+|+||||+...|+..+. ....+|.+-+-+.
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 64 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKL 64 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 344555569999999999999999988 6677787655443
No 332
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.52 E-value=0.051 Score=47.26 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=31.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD 85 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD 85 (294)
.+-+.+++|..|+||||+...+...+. ..+.+++.++
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~--~~~~~iitiE 115 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELN--TPEKNIITVE 115 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhC--CCCCeEEEEC
Confidence 455778889999999999999988888 6677888875
No 333
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.52 E-value=0.0065 Score=46.64 Aligned_cols=52 Identities=27% Similarity=0.278 Sum_probs=40.3
Q ss_pred hHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 36 IELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 36 ~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
...+...+........++.|..|+||||++..++..+. ..+.+|..+++...
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~ 58 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDL 58 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhh
Confidence 34445555444556677789999999999999999998 78889999988653
No 334
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.51 E-value=0.0025 Score=56.57 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=30.2
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
..+..+-|.+|+||||+...|+..+. ....+|.+.+.+.
T Consensus 30 Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 30 GECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 33455558999999999999999888 6677887765554
No 335
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.0041 Score=53.16 Aligned_cols=40 Identities=25% Similarity=0.295 Sum_probs=30.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDA 66 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 334555559999999999999999887 6667777655443
No 336
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.50 E-value=0.005 Score=57.18 Aligned_cols=74 Identities=20% Similarity=0.215 Sum_probs=54.7
Q ss_pred CcChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCC
Q psy11347 33 DPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGW 111 (294)
Q Consensus 33 ~~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~ 111 (294)
.|+...|.=.+.. +..++++ |.+|+||||++..|-.... .....|-+=..|..+.+ ...||.+..|+++....+
T Consensus 349 ~pil~~isF~l~~-G~~lgII-GPSgSGKSTLaR~lvG~w~--p~~G~VRLDga~l~qWd-~e~lG~hiGYLPQdVeLF 422 (580)
T COG4618 349 KPILKGISFALQA-GEALGII-GPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWD-REQLGRHIGYLPQDVELF 422 (580)
T ss_pred CcceecceeEecC-CceEEEE-CCCCccHHHHHHHHHcccc--cCCCcEEecchhhhcCC-HHHhccccCcCcccceec
Confidence 3444444433333 5667777 7788999999999999999 88889998888877665 567888888877765444
No 337
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=96.50 E-value=0.018 Score=50.21 Aligned_cols=65 Identities=11% Similarity=-0.028 Sum_probs=41.1
Q ss_pred ccEEEEcCCCCCCh--HHH-----HHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSD--EHL-----SLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~--~~~-----~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.++++|+|+-... ... .....+ ..+|.++++++.+...... ..++..+...+.+ ..+|+|++|.
T Consensus 48 ~qii~vDTPG~~~~~~~l~~~~~~~~~~~l--~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p-~ilV~NK~Dl 119 (270)
T TIGR00436 48 SQIIFIDTPGFHEKKHSLNRLMMKEARSAI--GGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRP-VVLTRNKLDN 119 (270)
T ss_pred cEEEEEECcCCCCCcchHHHHHHHHHHHHH--hhCCEEEEEEECCCCCchH-HHHHHHHHhcCCC-EEEEEECeeC
Confidence 67899999964321 110 112233 5799999999887643322 5556666666666 4589999984
No 338
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.50 E-value=0.0048 Score=52.27 Aligned_cols=40 Identities=28% Similarity=0.436 Sum_probs=30.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+.|.+|+||||+...|+..+. .....|.+-+.+.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 344555559999999999999999987 6677777654443
No 339
>PRK08506 replicative DNA helicase; Provisional
Probab=96.50 E-value=0.0015 Score=61.48 Aligned_cols=56 Identities=18% Similarity=0.309 Sum_probs=45.1
Q ss_pred CcChHHHHhhhccC-ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 33 DPGIELVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 33 ~~~~~~i~~~~~~~-~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
....+.|...+... ...+.++++..|+|||+++.++|...+ ..|++|+++-+....
T Consensus 176 ~TG~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~--~~g~~V~~fSlEMs~ 232 (472)
T PRK08506 176 DTGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKAL--NQDKGVAFFSLEMPA 232 (472)
T ss_pred cCChHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHH--hcCCcEEEEeCcCCH
Confidence 34566666655443 566899999999999999999999998 789999999888653
No 340
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.50 E-value=0.0044 Score=52.00 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=30.3
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
.+..+-|.+|+||||+...|+..+. ....+|.+-+.+
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~ 60 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTV 60 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEe
Confidence 6677779999999999999999988 667788765544
No 341
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.50 E-value=0.007 Score=51.44 Aligned_cols=40 Identities=30% Similarity=0.394 Sum_probs=30.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+-+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 63 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDH 63 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeec
Confidence 444555559999999999999999988 6777887655443
No 342
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.49 E-value=0.0047 Score=51.94 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=32.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
...++.+-|.+|+||||+-..|+...- .....|.+-+.+...
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i~~ 70 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQITK 70 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccchhc
Confidence 344555558899999999999999766 666788888877654
No 343
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.49 E-value=0.0024 Score=58.26 Aligned_cols=40 Identities=25% Similarity=0.337 Sum_probs=30.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...||..+. ....+|.+-+.+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i 67 (369)
T PRK11000 28 EGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM 67 (369)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 334555558999999999999999988 6777887765554
No 344
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.49 E-value=0.0037 Score=54.85 Aligned_cols=40 Identities=28% Similarity=0.399 Sum_probs=31.4
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
..+..+-|.+|+||||+...|+..+. ....+|.+-+.+..
T Consensus 33 Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~ 72 (279)
T PRK13635 33 GEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLS 72 (279)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECC
Confidence 33445558899999999999999998 77778888666553
No 345
>PRK06321 replicative DNA helicase; Provisional
Probab=96.48 E-value=0.0034 Score=59.04 Aligned_cols=57 Identities=12% Similarity=0.289 Sum_probs=44.1
Q ss_pred CcChHHHHhhhccC-ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 33 DPGIELVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 33 ~~~~~~i~~~~~~~-~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
....+.|.+.+... ...+.++++..|+|||+++.++|...+ ...|++|+++-+....
T Consensus 210 ~tG~~~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a-~~~g~~v~~fSLEMs~ 267 (472)
T PRK06321 210 PTHFIDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFC-FQNRLPVGIFSLEMTV 267 (472)
T ss_pred ccCcHHHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHH-HhcCCeEEEEeccCCH
Confidence 34456666666544 457889999999999999999999987 2358899999887643
No 346
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.48 E-value=0.086 Score=42.11 Aligned_cols=65 Identities=14% Similarity=0.061 Sum_probs=36.6
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHH----hcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCR----KVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~----~~~~~~~~vvvN~~~~ 228 (294)
+++.++|+|+.... .......+ ..+|.++++.+... .++......+..+. ..+.+ +.+++|+.|.
T Consensus 58 ~~~~~~D~~G~~~~-~~~~~~~~--~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~ 127 (173)
T cd04155 58 FKLNVWDIGGQRAI-RPYWRNYF--ENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVP-VLVFANKQDL 127 (173)
T ss_pred EEEEEEECCCCHHH-HHHHHHHh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECCCC
Confidence 67889999854321 11112222 57888888887654 34444444444332 22344 5677899873
No 347
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.48 E-value=0.0034 Score=57.04 Aligned_cols=39 Identities=26% Similarity=0.311 Sum_probs=30.8
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
.+..+-|.+|+||||+...||..+. ....+|.+-+.+..
T Consensus 31 e~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 69 (356)
T PRK11650 31 EFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVN 69 (356)
T ss_pred CEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence 3455558899999999999999988 77778877665543
No 348
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=96.47 E-value=0.11 Score=41.90 Aligned_cols=89 Identities=19% Similarity=0.244 Sum_probs=53.5
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhcC---CCeeEEEeccccccCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKVN---IPIIGVVENMATFVCPKCTK 235 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~~---~~~~~vvvN~~~~~~~~~~~ 235 (294)
+.+-|+|+|+... ......... ..+|.++++.+.+ ..++..+..++..+.... ...+.+|.|+.|.. .
T Consensus 63 ~~~~i~Dt~G~~~--~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~-----~ 134 (180)
T cd04127 63 IHLQLWDTAGQER--FRSLTTAFF-RDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE-----D 134 (180)
T ss_pred EEEEEEeCCChHH--HHHHHHHHh-CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch-----h
Confidence 6788999996322 111212111 5789899888775 477777877777775432 22366889999842 1
Q ss_pred CCccCCCCchhHHHHHhhcCCcee
Q psy11347 236 PSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 236 ~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
...+. .+..+++.+..+.+++
T Consensus 135 ~~~v~---~~~~~~~~~~~~~~~~ 155 (180)
T cd04127 135 QRQVS---EEQAKALADKYGIPYF 155 (180)
T ss_pred cCccC---HHHHHHHHHHcCCeEE
Confidence 11222 2345667666666544
No 349
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.47 E-value=0.0078 Score=49.86 Aligned_cols=38 Identities=34% Similarity=0.388 Sum_probs=30.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
...+.++.|..|+||||+...++..+. ..|++|+++-.
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~--~~g~~v~~~ap 54 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEALE--AAGKRVIGLAP 54 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHHH--HTT--EEEEES
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHH--hCCCeEEEECC
Confidence 445677778899999999999999999 78999988844
No 350
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.47 E-value=0.017 Score=47.10 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=27.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEE
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV 83 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vll 83 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~ 58 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEW 58 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEE
Confidence 444555569999999999999999988 66777765
No 351
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.47 E-value=0.0051 Score=50.81 Aligned_cols=37 Identities=30% Similarity=0.517 Sum_probs=29.8
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCc----EEEEecCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVD----VGVLDLDI 88 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~----VlliD~D~ 88 (294)
|..++|.+|+||||+|..|+..|. ..+.. +.++..|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~ 41 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDD 41 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecc
Confidence 455678999999999999999999 77776 66665553
No 352
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.47 E-value=0.023 Score=45.17 Aligned_cols=66 Identities=17% Similarity=0.131 Sum_probs=43.0
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcCC--CeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNI--PIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~--~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+..... ......+ ..+|.++++.+.+. .++..+..++..+..... ..+-+|.|++|.
T Consensus 52 ~~l~i~D~~G~~~~~-~~~~~~~--~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 120 (165)
T cd01864 52 VKLQIWDTAGQERFR-TITQSYY--RSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120 (165)
T ss_pred EEEEEEECCChHHHH-HHHHHHh--ccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 678999999743211 1112222 57899998887766 567777777777765432 135688999984
No 353
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.47 E-value=0.0041 Score=51.43 Aligned_cols=40 Identities=28% Similarity=0.263 Sum_probs=30.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHH--hhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVL--AKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~l--a~~~~g~~VlliD~D~ 88 (294)
...+..+.|.+|+||||+...|+..+ . ....+|.+-+-+.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~~~ 75 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGRPL 75 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEeC
Confidence 44455666999999999999999998 7 6667787655444
No 354
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.46 E-value=0.006 Score=51.13 Aligned_cols=39 Identities=31% Similarity=0.466 Sum_probs=30.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.|
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~ 61 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQS 61 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 444555569999999999999999988 677788764444
No 355
>PF13245 AAA_19: Part of AAA domain
Probab=96.46 E-value=0.0055 Score=42.50 Aligned_cols=37 Identities=27% Similarity=0.248 Sum_probs=29.0
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCC----CCcEEEEec
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNE----SVDVGVLDL 86 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~----g~~VlliD~ 86 (294)
.-+.++.+..|+|||+++.+++..+. .. +.+|+++-.
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~--~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL--AARADPGKRVLVLAP 50 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HHhcCCCCeEEEECC
Confidence 44677789999999988888777776 44 889999844
No 356
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0025 Score=59.42 Aligned_cols=41 Identities=32% Similarity=0.489 Sum_probs=34.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
+..|+++ |++|+||||+...++.++. ....++.+-+.+...
T Consensus 364 GEkvAIl-G~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~~~ 404 (573)
T COG4987 364 GEKVAIL-GRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEIAS 404 (573)
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHhccC--CCCCeeeECCcChhh
Confidence 6677777 8999999999999999999 778889888877643
No 357
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=96.46 E-value=0.095 Score=43.88 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=43.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC-----CCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN-----IPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~-----~~~~~vvvN~~~~ 228 (294)
+.+.|+|+++.-.. ........ ..+|.+|++.+.+. .++..+..++..+.+.. ...+.+|.|+.|.
T Consensus 50 ~~~~i~Dt~G~~~~--~~l~~~~~-~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL 121 (215)
T cd04109 50 VTLQVWDIGGQSIG--GKMLDKYI-YGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDL 121 (215)
T ss_pred EEEEEEECCCcHHH--HHHHHHHh-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccc
Confidence 67889999863221 11222111 58999999987665 57777777777776542 1246788999984
No 358
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.45 E-value=0.0055 Score=51.19 Aligned_cols=39 Identities=23% Similarity=0.383 Sum_probs=31.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
...+..++|.+|+||||++..|+..+. +.++.+++.|..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~----~~~~~~i~~D~~ 43 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELG----DESIAVIPQDSY 43 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC----CCceEEEeCCcc
Confidence 345666678999999999999999885 457888988864
No 359
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.45 E-value=0.01 Score=50.10 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=29.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
+.+++++ |.+|+||||++..||.... .....|.+-+-
T Consensus 33 Ge~lgiv-GeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~ 69 (252)
T COG1124 33 GETLGIV-GESGSGKSTLARLLAGLEK--PSSGSILLDGK 69 (252)
T ss_pred CCEEEEE-cCCCCCHHHHHHHHhcccC--CCCceEEECCc
Confidence 5566666 7889999999999999999 76777766543
No 360
>PTZ00416 elongation factor 2; Provisional
Probab=96.45 E-value=0.043 Score=55.53 Aligned_cols=66 Identities=18% Similarity=0.051 Sum_probs=49.6
Q ss_pred CccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 159 GLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 159 ~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+|.+.++|+|+... ..-.+..++ ..+|.+|+|++....-...+..+++.+.+.+.+. -+++|++|.
T Consensus 91 ~~~i~liDtPG~~~-f~~~~~~al--~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~-iv~iNK~D~ 156 (836)
T PTZ00416 91 PFLINLIDSPGHVD-FSSEVTAAL--RVTDGALVVVDCVEGVCVQTETVLRQALQERIRP-VLFINKVDR 156 (836)
T ss_pred ceEEEEEcCCCHHh-HHHHHHHHH--hcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCE-EEEEEChhh
Confidence 37899999996543 223344444 6899999999887766667788888888888775 588999984
No 361
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.44 E-value=0.0078 Score=49.06 Aligned_cols=40 Identities=28% Similarity=0.361 Sum_probs=30.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+-+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~ 63 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDL 63 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 334555558999999999999999988 6677787654444
No 362
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=96.44 E-value=0.0062 Score=53.45 Aligned_cols=170 Identities=15% Similarity=0.242 Sum_probs=95.0
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEec
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSI 125 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (294)
.+++|.++++..-+||=|.+..|...+. ++|.++.++-+..++ .+. .. .++
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~--~~G~~a~fvaTGQTG----imi-a~-----------------~Gv----- 161 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALR--ERGINAGFVATGQTG----IMI-AG-----------------YGV----- 161 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHH--HTT--EEEEE-SHHH----HHC-HS-----------------EC------
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHH--HcCCCceEEecCCce----EEE-ec-----------------CCe-----
Confidence 5899999999999999999999999999 899999999885432 111 10 000
Q ss_pred ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHH-H-HHHHhhcCCCcEEEEecCCchhh---
Q psy11347 126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHL-S-LVQYLKGLPDIGAIVVTTPQEVS--- 200 (294)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~-~-~~~~l~~~~ad~vliv~~~~~~s--- 200 (294)
.+.. .........+..++-.... + .|+|||..-+++..+.. . .+..|.....|.+|+.-.+....
T Consensus 162 --~iDa------v~~DFvaGavE~~v~~~~~-~-~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~ 231 (301)
T PF07755_consen 162 --PIDA------VPSDFVAGAVEALVPEAAE-E-HDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDG 231 (301)
T ss_dssp ---GGG------SBGGGHHHHHHHHHHHHCC-C--SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TT
T ss_pred --eccc------hhhhhHHHHHHHHHHhhCc-C-CCEEEEeccccccCccccccchhhhccCCCCeEEEEecCCcccccC
Confidence 0000 0122233456666666653 4 69999999976643321 1 34444456899999888883322
Q ss_pred -----HHHHHHHHHHHHhc-----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCC
Q psy11347 201 -----LLDVRKEIDFCRKV-----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPI 264 (294)
Q Consensus 201 -----~~~~~~~l~~l~~~-----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~ 264 (294)
+-.....++.++.. ..+++++-+|-... . ..+....++++.+++|+|+.-.+.+
T Consensus 232 ~p~~~ip~l~~~I~l~e~la~~~~~~~VvgIslNt~~l------~----~~e~~~~~~~~~~e~glPv~Dp~r~ 295 (301)
T PF07755_consen 232 FPHYPIPPLEEEIELIEALAGTKPPAKVVGISLNTSGL------S----EEEAKAAIERIEEELGLPVTDPLRF 295 (301)
T ss_dssp STTSC---HHHHHHHHHHCCCGC---EEEEEECC-TTS-----------HHHHHHHHHHHHHHH-S-EE-HHHH
T ss_pred CCcCCCCCHHHHHHHHHHhhccCCCccEEEEEEECCCC------C----HHHHHHHHHHHHHHHCCCeeecccC
Confidence 23344455555433 23488999998542 1 1123456678888899998865543
No 363
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.44 E-value=0.1 Score=41.04 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=52.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.++|+|+..... ......+ ..+|.++++.+... .++..+..++..+.... -..+.+|.|+.+.. ..
T Consensus 49 ~~~~l~D~~G~~~~~-~~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~-----~~ 120 (164)
T smart00175 49 VKLQIWDTAGQERFR-SITSSYY--RGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE-----DQ 120 (164)
T ss_pred EEEEEEECCChHHHH-HHHHHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc-----cc
Confidence 578899999643211 1112222 57999998887765 57777777777765432 22467889998832 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+ ..+.++++.+..+.+++
T Consensus 121 ~~~---~~~~~~~~~~~~~~~~~ 140 (164)
T smart00175 121 RQV---SREEAEAFAEEHGLPFF 140 (164)
T ss_pred cCC---CHHHHHHHHHHcCCeEE
Confidence 111 13345566666666543
No 364
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.44 E-value=0.0033 Score=47.41 Aligned_cols=24 Identities=46% Similarity=0.677 Sum_probs=20.8
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+.++.|..|+||||++..||..+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 457789999999999999998775
No 365
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.046 Score=48.04 Aligned_cols=174 Identities=16% Similarity=0.205 Sum_probs=108.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
.++++++++.--+||=|.+..|...+. ..|+++..+-+...+- +. ...++-+
T Consensus 148 a~~V~vvGTd~~vGKrTTa~~L~~~~~--e~G~~a~fvaTgqtgi----l~------------------~~~gvvv---- 199 (339)
T COG3367 148 AKVVLVVGTDCAVGKRTTALELREAAR--EEGIKAGFVATGQTGI----LI------------------ADDGVVV---- 199 (339)
T ss_pred CcEEEEeccccccchhHHHHHHHHHHH--HhCCccceEecCceee----EE------------------ecCceEe----
Confidence 779999999999999999999999999 8999999998865430 00 0111111
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH-HHHHHHhhcCCCcEEEEecCCchhhHH---
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH-LSLVQYLKGLPDIGAIVVTTPQEVSLL--- 202 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~-~~~~~~l~~~~ad~vliv~~~~~~s~~--- 202 (294)
+.. ........+..+.-++. ++++|+|+|..-+++..+. --.+..+.....|.+|+.-.|+.....
T Consensus 200 ------dav---~~DfaAGave~~v~~~~-e~~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~H~P~r~~~~g~P 269 (339)
T COG3367 200 ------DAV---VMDFAAGAVESAVYEAE-EKNPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLCHDPNRKYRDGFP 269 (339)
T ss_pred ------cch---hHHHHHHHHHHHHHHhh-hcCCCEEEEeccccccCCCcccchhhhcCCCCCeEEEEecCCCccccCCC
Confidence 000 01111223444444443 2249999999987664332 223444555789999998888765544
Q ss_pred ----HHHHHHHHHHhc-CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchh
Q psy11347 203 ----DVRKEIDFCRKV-NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLV 268 (294)
Q Consensus 203 ----~~~~~l~~l~~~-~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~ 268 (294)
....++...... +.+.+++.+|--.- .+- ...+...++..++|+|+...+.+.+.+
T Consensus 270 ~~ip~leevi~l~e~l~~a~Vvgi~lNtr~~--------dE~--~are~~a~l~~efglP~~Dp~~~~~d~ 330 (339)
T COG3367 270 EPIPPLEEVIALYELLSNAKVVGIALNTRNL--------DEE--EARELCAKLEAEFGLPVTDPLRFGEDV 330 (339)
T ss_pred CcCCCHHHHHHHHHHccCCcEEEEEeccccc--------ChH--HHHHHHHHHhhccCCccccccccchHH
Confidence 133344444322 47889999987321 110 123445666677899988888877655
No 366
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.44 E-value=0.11 Score=42.92 Aligned_cols=67 Identities=13% Similarity=-0.025 Sum_probs=38.7
Q ss_pred ccEEEEcCCCCCC---hH----HHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTS---DE----HLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~---~~----~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~ 228 (294)
++++|+|+|+... .. .......+ ..+|.++++.+.+. .+......+.+.++..+ ...+.+|+|++|.
T Consensus 89 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~--~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl 165 (204)
T cd01878 89 REVLLTDTVGFIRDLPHQLVEAFRSTLEEV--AEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDL 165 (204)
T ss_pred ceEEEeCCCccccCCCHHHHHHHHHHHHHH--hcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEcccc
Confidence 5789999996422 11 11111112 46898998887764 33344444445554433 2346799999883
No 367
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.43 E-value=0.0043 Score=53.55 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=32.7
Q ss_pred EEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 52 VLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 52 v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
.+.|.+|+||||++..|+..|. ..|.+|.+++.|...
T Consensus 3 gItG~SGSGKTTv~~~l~~~l~--~~g~~v~vI~~D~yy 39 (277)
T cd02029 3 AVTGSSGAGTTTVKRAFEHIFA--REGIHPAVVEGDSFH 39 (277)
T ss_pred EEECCCCCCHHHHHHHHHHHHH--hcCCceEEEeccccc
Confidence 3468899999999999999999 789999999999754
No 368
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.43 E-value=0.0068 Score=51.66 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=30.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 30 QGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 444555569999999999999999988 6677787655443
No 369
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=96.43 E-value=0.0041 Score=53.77 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=29.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
...+..+.|.+|+||||+...|+..+. ....+|.+-+.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~ 68 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQT 68 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEE
Confidence 344555558999999999999999988 666777765443
No 370
>PRK15494 era GTPase Era; Provisional
Probab=96.42 E-value=0.071 Score=48.14 Aligned_cols=65 Identities=20% Similarity=0.169 Sum_probs=38.8
Q ss_pred ccEEEEcCCCCCCh------HHHH-HHHHhhcCCCcEEEEecCCchhhHHHH-HHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSD------EHLS-LVQYLKGLPDIGAIVVTTPQEVSLLDV-RKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~------~~~~-~~~~l~~~~ad~vliv~~~~~~s~~~~-~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.++++|+|+.... .... ....+ ..+|.++++++... ++... ..+++.++..+.+.+ +|+|++|.
T Consensus 100 ~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l--~~aDvil~VvD~~~-s~~~~~~~il~~l~~~~~p~I-lViNKiDl 172 (339)
T PRK15494 100 TQVILYDTPGIFEPKGSLEKAMVRCAWSSL--HSADLVLLIIDSLK-SFDDITHNILDKLRSLNIVPI-FLLNKIDI 172 (339)
T ss_pred eEEEEEECCCcCCCcccHHHHHHHHHHHHh--hhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEE-EEEEhhcC
Confidence 67899999964221 0111 11123 57999998887643 22222 345666666666654 78899983
No 371
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=96.42 E-value=0.0054 Score=55.69 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=30.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 22 ~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i 61 (354)
T TIGR02142 22 GQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTL 61 (354)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 334555569999999999999999988 6677787655443
No 372
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.41 E-value=0.0081 Score=52.19 Aligned_cols=40 Identities=28% Similarity=0.301 Sum_probs=30.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.|.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 334555559999999999999999887 6677787655443
No 373
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.41 E-value=0.0046 Score=53.15 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=28.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~ 66 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDIT 66 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEE
Confidence 333455558999999999999999887 666677664433
No 374
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=96.40 E-value=0.085 Score=52.76 Aligned_cols=89 Identities=17% Similarity=0.077 Sum_probs=53.8
Q ss_pred ccEEEEcCCCCCCh---------HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccC
Q psy11347 160 LEYLLIDTPPGTSD---------EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVC 230 (294)
Q Consensus 160 yd~IiiD~p~~~~~---------~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~ 230 (294)
+++.++|+|+..+- +..-....+....+|.++.|++.+.. .....+..++.+.+.+ .-+++||.|..
T Consensus 50 ~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giP-vIvVlNK~Dl~- 125 (772)
T PRK09554 50 HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIP-CIVALNMLDIA- 125 (772)
T ss_pred eEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCC-EEEEEEchhhh-
Confidence 78999999964421 11111122222478999999987653 2333455566677777 56899999831
Q ss_pred CCCCCCCccCCCCchhHHHHHhhcCCceee
Q psy11347 231 PKCTKPSEIFPKDSGGAEKMCAELSVPFLG 260 (294)
Q Consensus 231 ~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~ 260 (294)
++.. .....+++.+.+|.+++.
T Consensus 126 ----~~~~----i~id~~~L~~~LG~pVvp 147 (772)
T PRK09554 126 ----EKQN----IRIDIDALSARLGCPVIP 147 (772)
T ss_pred ----hccC----cHHHHHHHHHHhCCCEEE
Confidence 1112 223456777788888774
No 375
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.39 E-value=0.0047 Score=52.21 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=30.6
Q ss_pred EEecCCCchHHHHHHHHHHHHhhcC--CCCcEEEEecCCCC
Q psy11347 52 VLSGKGGVGKSTFTNLLARVLAKSN--ESVDVGVLDLDICG 90 (294)
Q Consensus 52 v~s~kGGvGKTTia~~LA~~la~~~--~g~~VlliD~D~~~ 90 (294)
.+.|.+|+||||++..|+..|. . .+.+|.++-.|...
T Consensus 3 gI~G~sGSGKTTla~~L~~~l~--~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 3 GIAGSVAVGKSTTARVLQALLS--RWPDHPNVELITTDGFL 41 (220)
T ss_pred EeeCCCCCCHHHHHHHHHHHHh--hcCCCCcEEEEecCccc
Confidence 4558999999999999999997 4 56789998888543
No 376
>PRK04328 hypothetical protein; Provisional
Probab=96.38 E-value=0.022 Score=49.01 Aligned_cols=54 Identities=24% Similarity=0.226 Sum_probs=41.6
Q ss_pred cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
..++.|.+.+.. ....+..+.|..|+|||+++..++.... ..|.+++++.++..
T Consensus 7 tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~--~~ge~~lyis~ee~ 62 (249)
T PRK04328 7 TGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGVYVALEEH 62 (249)
T ss_pred CCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEEeeCC
Confidence 345556665543 3466777778899999999999998877 67999999999764
No 377
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.38 E-value=0.0042 Score=54.30 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=31.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 70 (274)
T PRK13647 30 EGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVN 70 (274)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 334444558999999999999999988 66778877665543
No 378
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=96.37 E-value=0.089 Score=41.98 Aligned_cols=66 Identities=15% Similarity=0.122 Sum_probs=43.0
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhcC--CCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKVN--IPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~ 228 (294)
..+.|+|+|+.-.... .....+ ..+|.++++.+.+ ..++..+..++..+.... ...+.+|.|+.+.
T Consensus 53 ~~~~i~Dt~G~~~~~~-~~~~~~--~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 121 (168)
T cd01866 53 IKLQIWDTAGQESFRS-ITRSYY--RGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDL 121 (168)
T ss_pred EEEEEEECCCcHHHHH-HHHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 5688999986332111 112222 5789999998865 577778888887776542 1236788899884
No 379
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.37 E-value=0.0025 Score=55.69 Aligned_cols=40 Identities=33% Similarity=0.366 Sum_probs=31.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 66 (274)
T PRK13644 27 KGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDT 66 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEC
Confidence 344555559999999999999999888 6777888766554
No 380
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.37 E-value=0.11 Score=41.30 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=43.0
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC-chhhHHHHHHHHHHHHhcC--CCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP-QEVSLLDVRKEIDFCRKVN--IPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~-~~~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+....... ....+ ..+|.++++.+. +..++..+..++..+.... ...+.+|.|+.|.
T Consensus 52 ~~l~l~D~~g~~~~~~~-~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl 120 (167)
T cd01867 52 IKLQIWDTAGQERFRTI-TTAYY--RGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDM 120 (167)
T ss_pred EEEEEEeCCchHHHHHH-HHHHh--CCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 67889999964332211 11223 579999988865 4577777777777776542 2245688899884
No 381
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=96.37 E-value=0.0087 Score=49.25 Aligned_cols=41 Identities=27% Similarity=0.410 Sum_probs=34.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
..|+-+-|.+|+||||+-.-||..|. ....+|.+-.+|.+.
T Consensus 28 Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~ 68 (245)
T COG4555 28 GEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVR 68 (245)
T ss_pred ceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeeccccc
Confidence 33444558899999999999999999 888899998888764
No 382
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.37 E-value=0.0096 Score=56.81 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=31.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 30 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 30 PGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 444555559999999999999999998 6677887755554
No 383
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.35 E-value=0.0042 Score=59.55 Aligned_cols=40 Identities=30% Similarity=0.426 Sum_probs=31.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
++.++++ |+.|+||||++..|+..+. ....++.+-+.|..
T Consensus 361 G~~vaIv-G~SGsGKSTLl~lL~g~~~--p~~G~I~i~g~~i~ 400 (529)
T TIGR02868 361 GERVAIL-GPSGSGKSTLLMLLTGLLD--PLQGEVTLDGVSVS 400 (529)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhh
Confidence 5555555 8899999999999999998 77778877655543
No 384
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.35 E-value=0.1 Score=42.78 Aligned_cols=89 Identities=15% Similarity=0.186 Sum_probs=52.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcCC--CeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNI--PIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~--~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+....... ....+ ..+|.+|++.+.+. .++..+..++..+.+... ..+.+|.|++|.. ..
T Consensus 50 ~~~~i~Dt~G~~~~~~~-~~~~~--~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~-----~~ 121 (191)
T cd04112 50 VKLQIWDTAGQERFRSV-THAYY--RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS-----GE 121 (191)
T ss_pred EEEEEEeCCCcHHHHHh-hHHHc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch-----hc
Confidence 67889999964321111 11222 56898888887754 667777777777765432 2366888999842 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+. ....+.+.+.++.+++
T Consensus 122 ~~~~---~~~~~~l~~~~~~~~~ 141 (191)
T cd04112 122 RVVK---REDGERLAKEYGVPFM 141 (191)
T ss_pred cccC---HHHHHHHHHHcCCeEE
Confidence 1111 2345566666665544
No 385
>PRK06762 hypothetical protein; Provisional
Probab=96.35 E-value=0.0049 Score=49.44 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=28.0
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
+.+.++.|..|+||||+|..|+..+. . .+.+++.|.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~--~---~~~~i~~D~ 37 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG--R---GTLLVSQDV 37 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--C---CeEEecHHH
Confidence 34556679999999999999998886 3 477777654
No 386
>PRK05636 replicative DNA helicase; Provisional
Probab=96.34 E-value=0.004 Score=59.08 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=43.2
Q ss_pred CcChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 33 DPGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 33 ~~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
....+.|...+.. ....+.++++..|+|||+++.++|...+ ...|++|+++-+...
T Consensus 249 ~TG~~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a-~~~g~~v~~fSlEMs 305 (505)
T PRK05636 249 PTGFKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSAS-IKHNKASVIFSLEMS 305 (505)
T ss_pred ecChHHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHH-HhCCCeEEEEEeeCC
Confidence 4456666665544 3567889999999999999999999877 245889999988764
No 387
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=96.34 E-value=0.055 Score=43.00 Aligned_cols=66 Identities=12% Similarity=-0.035 Sum_probs=41.0
Q ss_pred cEEEEcCCCCCC------hHHHHHHHHhhcCCCcEEEEecCCchh--hHHHHHHHHHHHHhcC----CCeeEEEeccccc
Q psy11347 161 EYLLIDTPPGTS------DEHLSLVQYLKGLPDIGAIVVTTPQEV--SLLDVRKEIDFCRKVN----IPIIGVVENMATF 228 (294)
Q Consensus 161 d~IiiD~p~~~~------~~~~~~~~~l~~~~ad~vliv~~~~~~--s~~~~~~~l~~l~~~~----~~~~~vvvN~~~~ 228 (294)
.+.++|+|+-.. .........+ ..+|.++++.+.+.. +......+++.+.... ...+.+|+|++|.
T Consensus 49 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~--~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl 126 (170)
T cd01898 49 SFVVADIPGLIEGASEGKGLGHRFLRHI--ERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDL 126 (170)
T ss_pred eEEEEecCcccCcccccCCchHHHHHHH--HhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhc
Confidence 789999996321 0011222222 468999999988764 5666666666665432 2235689999984
No 388
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.33 E-value=0.0061 Score=49.44 Aligned_cols=38 Identities=32% Similarity=0.324 Sum_probs=31.9
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.+.++.|-.|+||||++..|+..|. ..+..+.++|.|.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~--~~~~~~~~~~~d~ 45 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLK--LKYSNVIYLDGDE 45 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEecHH
Confidence 3566678899999999999999999 7788888887653
No 389
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=96.33 E-value=0.1 Score=41.25 Aligned_cols=66 Identities=14% Similarity=0.065 Sum_probs=42.3
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC-CCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN-IPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~-~~~~~vvvN~~~~ 228 (294)
..+.++|+|+..... ......+ ..+|.++++.+.+. .++..+..++..+.... .....+|.|+.|.
T Consensus 52 ~~l~i~Dt~G~~~~~-~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 119 (164)
T cd04101 52 VELFIFDSAGQELYS-DMVSNYW--ESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDL 119 (164)
T ss_pred EEEEEEECCCHHHHH-HHHHHHh--CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 789999998532211 1122223 57999999988764 55666677777766543 2245688899873
No 390
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.33 E-value=0.0035 Score=54.93 Aligned_cols=41 Identities=27% Similarity=0.286 Sum_probs=31.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLT 72 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECC
Confidence 344555559999999999999999998 67778877665553
No 391
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=96.31 E-value=0.0089 Score=51.61 Aligned_cols=39 Identities=36% Similarity=0.396 Sum_probs=29.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~ 65 (255)
T PRK11231 27 TGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKP 65 (255)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEE
Confidence 334555559999999999999999887 666677765443
No 392
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=96.31 E-value=0.018 Score=53.11 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=32.3
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
..+..+-|.+|+||||+...|+..+. ....+|.+.+.+...
T Consensus 29 Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~ 69 (402)
T PRK09536 29 GSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEA 69 (402)
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCc
Confidence 33444558999999999999999998 777888887766543
No 393
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.30 E-value=0.0054 Score=52.46 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=29.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
...+..+.|.+|+||||+...|+..+. ....+|.+-+.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~ 65 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNH 65 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEe
Confidence 334555559999999999999999988 666778765544
No 394
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=96.29 E-value=0.0076 Score=52.16 Aligned_cols=54 Identities=22% Similarity=0.309 Sum_probs=42.4
Q ss_pred ChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCCCC
Q psy11347 35 GIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDICG 90 (294)
Q Consensus 35 ~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~~~ 90 (294)
..+.|...+.. ....+.++++..|+|||+++.++|..++ .. +.+|+++.++...
T Consensus 5 G~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a--~~~~~~vly~SlEm~~ 60 (259)
T PF03796_consen 5 GFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAA--LNGGYPVLYFSLEMSE 60 (259)
T ss_dssp STHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHH--HTTSSEEEEEESSS-H
T ss_pred ChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHH--HhcCCeEEEEcCCCCH
Confidence 45566666654 3566999999999999999999999999 55 6999999998753
No 395
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.29 E-value=0.0069 Score=51.47 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=30.2
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
..+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 49 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQI 49 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 33555559999999999999999988 6777887755443
No 396
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.29 E-value=0.0061 Score=52.17 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=29.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~ 64 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGED 64 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeE
Confidence 333455558999999999999999888 667777665444
No 397
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=96.29 E-value=0.0089 Score=54.26 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=30.2
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.+..+-|.+|+||||+...||..+. ....+|.+-+-|.
T Consensus 29 e~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 66 (353)
T PRK10851 29 QMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDV 66 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 3445558899999999999999988 7777887765554
No 398
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.29 E-value=0.007 Score=60.00 Aligned_cols=41 Identities=32% Similarity=0.367 Sum_probs=32.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
+..++++ |+.|+||||+...|+..+. ....+|.+-+.|...
T Consensus 491 G~~iaIv-G~sGsGKSTLlklL~gl~~--p~~G~I~idg~~l~~ 531 (694)
T TIGR03375 491 GEKVAII-GRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVDIRQ 531 (694)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhcCCC--CCCceEEECCEEhhh
Confidence 4555555 8999999999999999999 777888876665543
No 399
>PLN03232 ABC transporter C family member; Provisional
Probab=96.29 E-value=0.0094 Score=63.96 Aligned_cols=44 Identities=32% Similarity=0.426 Sum_probs=35.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM 93 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l 93 (294)
+..++++ |+.|+||||++..|.+.+. ....++++-+.|...-++
T Consensus 1262 GekvaIV-G~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~di~~i~~ 1305 (1495)
T PLN03232 1262 SEKVGVV-GRTGAGKSSMLNALFRIVE--LEKGRIMIDDCDVAKFGL 1305 (1495)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCc--CCCceEEECCEEhhhCCH
Confidence 6667777 8899999999999999999 788889887777654333
No 400
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=96.28 E-value=0.012 Score=50.91 Aligned_cols=40 Identities=33% Similarity=0.424 Sum_probs=30.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 65 (256)
T TIGR03873 26 PGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDL 65 (256)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEc
Confidence 344555558999999999999999888 6667787655443
No 401
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.28 E-value=0.075 Score=44.80 Aligned_cols=48 Identities=25% Similarity=0.316 Sum_probs=37.9
Q ss_pred HHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcC----CCCcEEEEecC
Q psy11347 39 VKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSN----ESVDVGVLDLD 87 (294)
Q Consensus 39 i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~----~g~~VlliD~D 87 (294)
+.+-+.+.+..=.++-+..|+||||+..-+|+.++ .. .++||.+||.-
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s-~g~~~~l~kkv~IiDer 179 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLS-DGINQFLPKKVGIIDER 179 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhh-ccccccCCceEEEEecc
Confidence 45566666666466668899999999999999999 33 57899999874
No 402
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.28 E-value=0.0062 Score=52.98 Aligned_cols=54 Identities=26% Similarity=0.345 Sum_probs=41.5
Q ss_pred cChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCCC
Q psy11347 34 PGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDIC 89 (294)
Q Consensus 34 ~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~~ 89 (294)
..++.|...+.. ....+.++.+..|+||||++.++|..++ .. |.+|+++.++..
T Consensus 15 tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~~ 70 (271)
T cd01122 15 WPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEEP 70 (271)
T ss_pred CCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEcccC
Confidence 334444444332 2455888899999999999999999998 55 999999999764
No 403
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.27 E-value=0.0079 Score=50.88 Aligned_cols=39 Identities=36% Similarity=0.429 Sum_probs=29.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHH-----hhcCCCCcEEEEecC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVL-----AKSNESVDVGVLDLD 87 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~l-----a~~~~g~~VlliD~D 87 (294)
...+..+-|.+|+||||+...|+..+ . ....+|.+-+-+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g~~ 68 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDGKD 68 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECCEE
Confidence 34455555899999999999999999 6 556677765444
No 404
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.27 E-value=0.0053 Score=55.62 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=30.4
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
..+..+-|.+|+||||+...||..+. ....+|.+-+-+.
T Consensus 32 Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 32 GTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred CCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 33555558999999999999999998 7777777755554
No 405
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.27 E-value=0.0062 Score=51.34 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=40.9
Q ss_pred CcChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 33 DPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 33 ~~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
......+++-.........++.|+.|+|||+++..++..+. ..+.++++++++.
T Consensus 23 ~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~ 76 (226)
T TIGR03420 23 AELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAE 76 (226)
T ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHH
Confidence 34555666544344455666678999999999999999998 7788999998854
No 406
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=96.27 E-value=0.1 Score=41.24 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=42.0
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhcCC--CeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKVNI--PIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~~~--~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+......+ ....+ ..++.+|++.+.. ..+...+..++..+.+... ..+-+|.|+.|.
T Consensus 52 ~~~~l~D~~g~~~~~~~-~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl 120 (165)
T cd01868 52 IKAQIWDTAGQERYRAI-TSAYY--RGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDL 120 (165)
T ss_pred EEEEEEeCCChHHHHHH-HHHHH--CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 67889999864321111 11222 5788788887664 5777777777777765432 346688999884
No 407
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.26 E-value=0.015 Score=53.85 Aligned_cols=38 Identities=29% Similarity=0.403 Sum_probs=29.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
...|-.+-|.+|.||||+...|...+. .....+.+-+-
T Consensus 29 ~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~ 66 (501)
T COG3845 29 KGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGK 66 (501)
T ss_pred CCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCE
Confidence 444555669999999999999999999 76666665433
No 408
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.26 E-value=0.0057 Score=55.92 Aligned_cols=39 Identities=31% Similarity=0.367 Sum_probs=30.7
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
..+..+-|.+|+||||+...||..+. ....+|.+-+-+.
T Consensus 40 Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 40 GEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 33555558999999999999999998 7777887765554
No 409
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.25 E-value=0.0066 Score=50.52 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=30.0
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
..+..+-|.+|+||||+...|+..+. ....+|.+-+-+.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~ 65 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPI 65 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEc
Confidence 33555558899999999999999988 7777887654443
No 410
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.25 E-value=0.0078 Score=49.71 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=30.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+.|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i 64 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNI 64 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCccc
Confidence 334555558999999999999999988 6677787765544
No 411
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.25 E-value=0.0048 Score=55.96 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=30.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
..+..+-|.+|+||||+...||..+. ....+|.+-+-+.
T Consensus 30 Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 30 GEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 33455558899999999999999998 7777887755544
No 412
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.22 E-value=0.073 Score=46.40 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=27.8
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
-..+.|..|+||||+...|+..+. ....++.+-+.+.
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~--~~~G~i~~~g~~v 149 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILS--TGISQLGLRGKKV 149 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccC--CCCceEEECCEEe
Confidence 345558899999999999999999 6655665544443
No 413
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.22 E-value=0.096 Score=47.38 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=28.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEe
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLD 85 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD 85 (294)
.+-+.+++|..|+||||+...|...+. .. +.+|+.++
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~--~~~~~~i~tiE 158 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN--KNAAGHIITIE 158 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC--cCCCCEEEEEc
Confidence 456777889999999999999998887 43 45666653
No 414
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.22 E-value=0.007 Score=51.95 Aligned_cols=40 Identities=35% Similarity=0.320 Sum_probs=29.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCC-----CCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-----SVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-----g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. .. ..+|.+-+.+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~~~~~~G~i~~~g~~~ 70 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMND--LVPGVRIEGKVLFDGQDI 70 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC--CCcCCCCceEEEECCEEc
Confidence 344555558999999999999999987 55 67787654443
No 415
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.21 E-value=0.24 Score=40.32 Aligned_cols=66 Identities=15% Similarity=0.072 Sum_probs=42.8
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~ 228 (294)
+++.++|+++..... ......+ ..+|.++++.+.+. .++..+..++..+.... ...+.+|.|+.|.
T Consensus 49 ~~~~i~Dt~g~~~~~-~~~~~~~--~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl 117 (188)
T cd04125 49 IKLQIWDTNGQERFR-SLNNSYY--RGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDL 117 (188)
T ss_pred EEEEEEECCCcHHHH-hhHHHHc--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCC
Confidence 678899999643211 1112222 57999999887754 67777777777776542 2346788899884
No 416
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.018 Score=47.88 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=27.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhc-CCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKS-NESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~-~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+... .....|.+-+.+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~ 74 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY 74 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEEC
Confidence 44455555999999999999999987600 1244566544443
No 417
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.21 E-value=0.0059 Score=54.83 Aligned_cols=40 Identities=30% Similarity=0.322 Sum_probs=34.2
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
+.++.|-.|+||||++..|+..|. ...|.+|.++|.|---
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~-~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLR-RERGWAVAVITYDDII 40 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHH-hccCCeEEEEcccccc
Confidence 357789999999999999999987 2589999999999643
No 418
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.20 E-value=0.01 Score=49.25 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=29.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+.|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 64 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPL 64 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEec
Confidence 333444458999999999999999988 6677787655443
No 419
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.19 E-value=0.0087 Score=58.13 Aligned_cols=40 Identities=18% Similarity=0.396 Sum_probs=30.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
+..++++ |+.|+||||++..|+..+. .. .+|.+-+.|...
T Consensus 376 G~~vaIv-G~SGsGKSTL~~lL~g~~p--~~-G~I~i~g~~i~~ 415 (588)
T PRK11174 376 GQRIALV-GPSGAGKTSLLNALLGFLP--YQ-GSLKINGIELRE 415 (588)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhcCCC--CC-cEEEECCEeccc
Confidence 4555555 8899999999999999885 54 578776665543
No 420
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=96.19 E-value=0.025 Score=54.80 Aligned_cols=66 Identities=17% Similarity=0.033 Sum_probs=46.0
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.++|+|+.- ...-.+...+ ..+|.+++|++.+......+...+..+...+++.+.+++|++|.
T Consensus 50 ~~v~~iDtPGhe-~f~~~~~~g~--~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dl 115 (581)
T TIGR00475 50 YRLGFIDVPGHE-KFISNAIAGG--GGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADR 115 (581)
T ss_pred EEEEEEECCCHH-HHHHHHHhhh--ccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCC
Confidence 678999999632 1112223333 57999999998876544556666667777888867799999984
No 421
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.18 E-value=0.094 Score=46.65 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=28.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD 85 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD 85 (294)
.+...+++|..|+||||+...|...+. . ..+++.++
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~--~-~~~iv~ie 178 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIP--K-DERIITIE 178 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCC--c-cccEEEEc
Confidence 345667779999999999999998887 4 44566664
No 422
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.18 E-value=0.024 Score=49.68 Aligned_cols=72 Identities=24% Similarity=0.136 Sum_probs=45.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh--hhhccccccccccccCCCCcceeccCeE
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM--PRMMGLLNEQVHQSASGWSPVFLEENLS 121 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l--~~~lg~~~~~~~~~~~~~~~~~~~~~l~ 121 (294)
+-+++++ |.+|+||||+...+-..=. ....+|.+-+-|...-+- ...+..+...+++.++.+......+|+.
T Consensus 32 GeI~GII-G~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA 105 (339)
T COG1135 32 GEIFGII-GYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVA 105 (339)
T ss_pred CcEEEEE-cCCCCcHHHHHHHHhccCC--CCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhh
Confidence 4445555 8899999999999988877 788899988866543211 1223344445556555555444444443
No 423
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.18 E-value=0.0097 Score=50.55 Aligned_cols=40 Identities=23% Similarity=0.441 Sum_probs=33.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEE-EecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV-LDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vll-iD~D~ 88 (294)
...+..+.|.+|+||||++..|+..+. ..+..+.+ +.+|.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~--~~~g~~~v~i~~D~ 72 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQ--QDGELPAIQVPMDG 72 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhh--hccCCceEEEeccc
Confidence 456777779999999999999999999 77777666 76665
No 424
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=96.18 E-value=0.2 Score=39.78 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=43.0
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+...... .....+ ..+|.+|++.+.+. .++..+..++..+.... ...+.+|.|+.|.
T Consensus 51 ~~l~i~Dt~G~~~~~~-~~~~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl 119 (166)
T cd04122 51 IKLQIWDTAGQERFRA-VTRSYY--RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL 119 (166)
T ss_pred EEEEEEECCCcHHHHH-HHHHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 7889999995432111 112223 57899999987765 67777777777665432 2346788899884
No 425
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.18 E-value=0.0081 Score=53.26 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=31.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+..
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 344555558999999999999999888 67778877665543
No 426
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.17 E-value=0.008 Score=49.85 Aligned_cols=38 Identities=29% Similarity=0.396 Sum_probs=28.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
..+..+.|.+|+||||+...|+..+. ....+|.+-+-+
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~ 64 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQS 64 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCc
Confidence 33455558999999999999999887 666677764433
No 427
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.17 E-value=0.027 Score=48.78 Aligned_cols=57 Identities=21% Similarity=0.238 Sum_probs=44.2
Q ss_pred cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCC
Q psy11347 34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPS 92 (294)
Q Consensus 34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~ 92 (294)
+.++.+.+-+.. ....+..+.|..|+|||+++..++...+ ..|.+|++|-++.....
T Consensus 7 TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~--~~ge~vlyvs~~e~~~~ 65 (260)
T COG0467 7 TGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGA--REGEPVLYVSTEESPEE 65 (260)
T ss_pred CCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHH--hcCCcEEEEEecCCHHH
Confidence 344445555552 4566777779999999999999999999 88999999999876433
No 428
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=96.17 E-value=0.13 Score=42.31 Aligned_cols=89 Identities=15% Similarity=0.056 Sum_probs=56.7
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhcCC-CeeEEEeccccccCCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKVNI-PIIGVVENMATFVCPKCTKPS 237 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~~~-~~~~vvvN~~~~~~~~~~~~~ 237 (294)
+.+-|+|+++.-....+ ..... ..+|.+|++.+.+ ..++..+..+++.+.+... ..+.+|.|+.|.. ...
T Consensus 55 ~~l~iwDt~G~~~~~~l-~~~~~--~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~-----~~~ 126 (189)
T cd04121 55 VKLQLWDTSGQGRFCTI-FRSYS--RGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA-----FKR 126 (189)
T ss_pred EEEEEEeCCCcHHHHHH-HHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch-----hcc
Confidence 77889999854322211 11222 5889999888775 5899999988888865422 2466888999853 111
Q ss_pred ccCCCCchhHHHHHhhcCCcee
Q psy11347 238 EIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 238 ~i~~~~~~~~~~~~~~~g~~~l 259 (294)
.+. .+..+.+.+..+.+++
T Consensus 127 ~v~---~~~~~~~a~~~~~~~~ 145 (189)
T cd04121 127 QVA---TEQAQAYAERNGMTFF 145 (189)
T ss_pred CCC---HHHHHHHHHHcCCEEE
Confidence 222 4456677777776655
No 429
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.0044 Score=51.07 Aligned_cols=38 Identities=37% Similarity=0.486 Sum_probs=33.0
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
+.+++|-.|+||||+|.+||+.|. +.+.+|.-+..|..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~--~~i~~vi~l~kdy~ 40 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR--QEIWRVIHLEKDYL 40 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH--Hhhhhccccchhhh
Confidence 456678899999999999999999 89999988888753
No 430
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.17 E-value=0.0049 Score=53.76 Aligned_cols=40 Identities=25% Similarity=0.465 Sum_probs=30.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+.|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 344555559999999999999999988 6677787765554
No 431
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.17 E-value=0.12 Score=40.77 Aligned_cols=66 Identities=24% Similarity=0.215 Sum_probs=42.9
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhcCCC--eeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKVNIP--IIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~~~~--~~~vvvN~~~~ 228 (294)
+.+.|+|+|+..... ...... ...+|.+|++.+.+ ..++..+..++..+.....+ .+.++.|+.+.
T Consensus 50 ~~~~i~D~~G~~~~~--~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 118 (163)
T cd01860 50 VKFEIWDTAGQERYR--SLAPMY-YRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADL 118 (163)
T ss_pred EEEEEEeCCchHHHH--HHHHHH-hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 678899999643211 111111 15789999888765 46788888888877655422 35678899873
No 432
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.16 E-value=0.024 Score=50.55 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=40.8
Q ss_pred cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhh----cCCCCcEEEEecCCC
Q psy11347 34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAK----SNESVDVGVLDLDIC 89 (294)
Q Consensus 34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~----~~~g~~VlliD~D~~ 89 (294)
...+.|...+.. ....|.-+.|..|+|||+++..+|..... ...+.+|++||+.-.
T Consensus 80 TG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~ 141 (313)
T TIGR02238 80 TGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGT 141 (313)
T ss_pred CCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCC
Confidence 445666666654 35678888899999999999999875430 013679999999754
No 433
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.16 E-value=0.2 Score=39.43 Aligned_cols=65 Identities=18% Similarity=0.184 Sum_probs=41.3
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc---CCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV---NIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~---~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+..... ......+ ..+|.++++.+.+. .+...+..++..+... +. .+.+|.|+.+.
T Consensus 49 ~~l~l~D~~G~~~~~-~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~iivv~nK~D~ 117 (161)
T cd04113 49 VKLQIWDTAGQERFR-SVTRSYY--RGAAGALLVYDITNRTSFEALPTWLSDARALASPNI-VVILVGNKSDL 117 (161)
T ss_pred EEEEEEECcchHHHH-HhHHHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-eEEEEEEchhc
Confidence 678999999643211 1112222 57898888887654 6666677777766533 33 36788899874
No 434
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.16 E-value=0.023 Score=49.96 Aligned_cols=69 Identities=25% Similarity=0.228 Sum_probs=49.2
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcc---ccccccccccCCCCccee
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMG---LLNEQVHQSASGWSPVFL 116 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg---~~~~~~~~~~~~~~~~~~ 116 (294)
....|.++-|-+|+||||+..++-+..- ....+|++=+-|...-+-..+.. .....+++.+..++....
T Consensus 52 ~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtV 123 (386)
T COG4175 52 EEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTV 123 (386)
T ss_pred cCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhH
Confidence 3566888889999999999999999999 88889999888876544444333 223345566555555433
No 435
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.15 E-value=0.011 Score=50.41 Aligned_cols=40 Identities=25% Similarity=0.288 Sum_probs=28.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHH--hhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVL--AKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~l--a~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+ . ....+|.+-+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~~~G~i~~~g~~~ 66 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGHPSYE--VTSGTILFKGQDL 66 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCcceEEECCEec
Confidence 34455555899999999999999984 4 4556676655443
No 436
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.15 E-value=0.026 Score=47.20 Aligned_cols=38 Identities=32% Similarity=0.405 Sum_probs=31.3
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
+|.-++|.+|+||||+|..|...|. .. +|.+|-.|...
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~--~~--~~~~I~~D~YY 46 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLG--VE--KVVVISLDDYY 46 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhC--cC--cceEeeccccc
Confidence 5666778899999999999999999 44 88888887543
No 437
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.14 E-value=0.013 Score=55.84 Aligned_cols=55 Identities=15% Similarity=0.321 Sum_probs=44.0
Q ss_pred CcChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 33 DPGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 33 ~~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
...++.|.+.+.. ....+..+.|..|+|||+++..++...+ ..|.+|+++.++..
T Consensus 256 ~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~--~~g~~~~yis~e~~ 312 (509)
T PRK09302 256 SSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAAC--RRGERCLLFAFEES 312 (509)
T ss_pred cCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecCC
Confidence 4667777777753 2355666678999999999999999988 78999999998753
No 438
>PRK08840 replicative DNA helicase; Provisional
Probab=96.14 E-value=0.0067 Score=57.02 Aligned_cols=57 Identities=18% Similarity=0.327 Sum_probs=44.4
Q ss_pred CcChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 33 DPGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 33 ~~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
....+.|...+.. ...-+.++++..|+|||+++.++|...+ ...|++|+++-+....
T Consensus 201 ~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a-~~~~~~v~~fSlEMs~ 258 (464)
T PRK08840 201 DTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAA-MDQDKPVLIFSLEMPA 258 (464)
T ss_pred CCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHH-HhCCCeEEEEeccCCH
Confidence 4556666665543 3577889999999999999999999987 2358999999887643
No 439
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=96.14 E-value=0.021 Score=53.16 Aligned_cols=66 Identities=15% Similarity=0.090 Sum_probs=41.2
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchh---hHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEV---SLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~---s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+.-. ..-.+...+ ..+|.+++|++.+.. ....+...+...+..+.+.+-+++|++|.
T Consensus 85 ~~i~iiDtpGh~~-f~~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl 153 (426)
T TIGR00483 85 YEVTIVDCPGHRD-FIKNMITGA--SQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDS 153 (426)
T ss_pred eEEEEEECCCHHH-HHHHHHhhh--hhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhc
Confidence 7899999996322 111222223 579999999887664 22223333444455566667789999984
No 440
>PTZ00243 ABC transporter; Provisional
Probab=96.14 E-value=0.014 Score=62.83 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=35.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM 93 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l 93 (294)
+..|+++ |+.|+||||++..|.+.+. ....++++-+.|...-++
T Consensus 1336 GekVaIV-GrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~di~~i~l 1379 (1560)
T PTZ00243 1336 REKVGIV-GRTGSGKSTLLLTFMRMVE--VCGGEIRVNGREIGAYGL 1379 (1560)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccCCH
Confidence 5666766 8999999999999999999 788889887777654343
No 441
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.13 E-value=0.046 Score=50.27 Aligned_cols=66 Identities=20% Similarity=0.094 Sum_probs=41.3
Q ss_pred ccEEEEcCCCCCC-h--HH-----HHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTS-D--EH-----LSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~-~--~~-----~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
..+++|||++-.. . .. -.+..++ ..||.++.|++....-...=..+.+.++..+.+ ..+|+|+++.
T Consensus 51 ~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai--~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kp-viLvvNK~D~ 124 (444)
T COG1160 51 REFILIDTGGLDDGDEDELQELIREQALIAI--EEADVILFVVDGREGITPADEEIAKILRRSKKP-VILVVNKIDN 124 (444)
T ss_pred ceEEEEECCCCCcCCchHHHHHHHHHHHHHH--HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEEcccC
Confidence 6799999995331 1 11 1233334 579999999987663333444555666644455 5689999883
No 442
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=96.13 E-value=0.13 Score=41.12 Aligned_cols=67 Identities=18% Similarity=0.067 Sum_probs=42.7
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC---CCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN---IPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~---~~~~~vvvN~~~~ 228 (294)
+++.|+|+++..... ....... ...+|.++++.+.+. .++..+..++..+.... ...+.+|.|+.|.
T Consensus 51 ~~~~i~Dt~G~~~~~-~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 121 (170)
T cd04115 51 IKVQLWDTAGQERFR-KSMVQHY-YRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDL 121 (170)
T ss_pred EEEEEEeCCChHHHH-HhhHHHh-hcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 788999998643211 0111111 157898888887754 67777777777776542 1236788999884
No 443
>PF13479 AAA_24: AAA domain
Probab=96.13 E-value=0.023 Score=47.76 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=25.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
+.-.++-|..|+||||++..+ .+++++|+|..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 345666799999999987765 48999999874
No 444
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=96.13 E-value=0.014 Score=52.72 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=40.2
Q ss_pred cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccc
Q psy11347 45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGL 99 (294)
Q Consensus 45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~ 99 (294)
.....++|+-|++|+||||++..|-...+ ....++++-|.-.+..+++.|.++
T Consensus 346 ikrGelvFliG~NGsGKST~~~LLtGL~~--PqsG~I~ldg~pV~~e~ledYR~L 398 (546)
T COG4615 346 IKRGELVFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPVSAEQLEDYRKL 398 (546)
T ss_pred EecCcEEEEECCCCCcHHHHHHHHhcccC--CCCCceeECCccCCCCCHHHHHHH
Confidence 34566888999999999999999999999 777788776655544455555443
No 445
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.13 E-value=0.012 Score=53.98 Aligned_cols=40 Identities=28% Similarity=0.406 Sum_probs=30.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...||..+. ....+|.+-+-+.
T Consensus 44 ~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 44 KGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 334555568899999999999999988 6677777655444
No 446
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=96.13 E-value=0.016 Score=62.27 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=35.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM 93 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l 93 (294)
+..|+++ |+.|+||||+...|.+.+. ....++.+-+.|...-++
T Consensus 1312 GekiaIV-GrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~dI~~i~~ 1355 (1522)
T TIGR00957 1312 GEKVGIV-GRTGAGKSSLTLGLFRINE--SAEGEIIIDGLNIAKIGL 1355 (1522)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhcCcc--CCCCeEEECCEEccccCH
Confidence 5667766 8999999999999999998 778888887777655443
No 447
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.13 E-value=0.015 Score=52.78 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=29.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
..+..+-|.+|+||||+...|+..+. ....+|.+-+.+
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~ 61 (352)
T PRK11144 24 QGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRV 61 (352)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 33555558999999999999999988 667778765544
No 448
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=96.13 E-value=0.016 Score=50.22 Aligned_cols=40 Identities=23% Similarity=0.440 Sum_probs=28.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCC---CCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE---SVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~---g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. .. ..+|.+-+.+.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~~~~G~i~~~g~~~ 71 (262)
T PRK09984 29 HGEMVALLGPSGSGKSTLLRHLSGLIT--GDKSAGSHIELLGRTV 71 (262)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC--CCCCCceEEEECCEec
Confidence 334455558999999999999999886 43 25776655443
No 449
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.13 E-value=0.086 Score=40.88 Aligned_cols=66 Identities=18% Similarity=0.074 Sum_probs=44.4
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~ 228 (294)
+++.++|+|+..... ......+ ..+|.++++++.+. .++..+..++..+.... .....+|.|+.+.
T Consensus 49 ~~~~l~D~~g~~~~~-~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 117 (159)
T cd00154 49 VKLQIWDTAGQERFR-SITPSYY--RGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDL 117 (159)
T ss_pred EEEEEEecCChHHHH-HHHHHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccc
Confidence 789999999653211 1122223 57899998888755 56777777777776554 2346789999873
No 450
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.12 E-value=0.051 Score=47.53 Aligned_cols=147 Identities=17% Similarity=0.207 Sum_probs=86.5
Q ss_pred cccCCCCCCCcChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc
Q psy11347 24 CSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ 103 (294)
Q Consensus 24 ~~~~~~~~~~~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~ 103 (294)
.|+.-|.-+....|.+...+-...+-+..+.|..|+||||..+++--++.+ ...+.++-|+ ||- ++
T Consensus 101 Ip~~i~~~e~LglP~i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~iN~-~~~~HIlTIE-DPI------------E~ 166 (353)
T COG2805 101 IPSKIPTLEELGLPPIVRELAESPRGLILVTGPTGSGKSTTLAAMIDYINK-HKAKHILTIE-DPI------------EY 166 (353)
T ss_pred cCccCCCHHHcCCCHHHHHHHhCCCceEEEeCCCCCcHHHHHHHHHHHHhc-cCCcceEEec-Cch------------Hh
Confidence 456666667777777777777777777777799999999999999999992 2233333232 221 01
Q ss_pred cccccCCCCcceeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhh
Q psy11347 104 VHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLK 183 (294)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~ 183 (294)
+..+...+ + .-++ +-....-....++..++ ++ +|+|+|-.--.. +++.++ +.
T Consensus 167 vh~skksl-----------I-------~QRE-vG~dT~sF~~aLraALR----eD-PDVIlvGEmRD~--ETi~~A--Lt 218 (353)
T COG2805 167 VHESKKSL-----------I-------NQRE-VGRDTLSFANALRAALR----ED-PDVILVGEMRDL--ETIRLA--LT 218 (353)
T ss_pred hhcchHhh-----------h-------hHHH-hcccHHHHHHHHHHHhh----cC-CCEEEEeccccH--HHHHHH--HH
Confidence 11110000 0 0000 00000111223444444 34 999999766443 233332 33
Q ss_pred cCCCcEEEEecCCchhhHHHHHHHHHHHH
Q psy11347 184 GLPDIGAIVVTTPQEVSLLDVRKEIDFCR 212 (294)
Q Consensus 184 ~~~ad~vliv~~~~~~s~~~~~~~l~~l~ 212 (294)
.+...+.|+-|-.+....+...|+++.+-
T Consensus 219 AAETGHLV~~TLHT~sA~~ti~RiidvFp 247 (353)
T COG2805 219 AAETGHLVFGTLHTNSAAKTIDRIIDVFP 247 (353)
T ss_pred HHhcCCEEEEecccccHHHHHHHHHHhCC
Confidence 35678889999888889999999888873
No 451
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=96.11 E-value=0.17 Score=40.55 Aligned_cols=65 Identities=12% Similarity=0.100 Sum_probs=39.6
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchh-hHHHHHHHHHHHHh----cCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEV-SLLDVRKEIDFCRK----VNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~-s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~ 228 (294)
+.+.++|+|+...... .....+ ..+|.++++.+.+.. ++......+..+.. .+. .+.+|.|+.|.
T Consensus 58 ~~l~l~D~~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl 127 (173)
T cd04154 58 YKLNIWDVGGQKTLRP-YWRNYF--ESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGA-TLLILANKQDL 127 (173)
T ss_pred EEEEEEECCCCHHHHH-HHHHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCC-CEEEEEECccc
Confidence 6789999996432111 112223 578988988877654 55555555544422 233 46689999883
No 452
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.11 E-value=0.0068 Score=51.52 Aligned_cols=39 Identities=26% Similarity=0.332 Sum_probs=30.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
...+..+.|.+|+||||+...|+..+. ....+|.+-+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~ 63 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKD 63 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 444555669999999999999999998 667777764433
No 453
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.10 E-value=0.15 Score=40.41 Aligned_cols=66 Identities=14% Similarity=0.056 Sum_probs=41.8
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~ 228 (294)
+.+-|+|+|+.... ........ ..+|.++++.+.+. .++..+..++..+.+.. ...+.+|.|+++.
T Consensus 51 ~~~~i~D~~G~~~~--~~~~~~~~-~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl 119 (166)
T cd01869 51 IKLQIWDTAGQERF--RTITSSYY-RGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 119 (166)
T ss_pred EEEEEEECCCcHhH--HHHHHHHh-CcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhc
Confidence 67889999864321 11212111 57899999987654 67777777777776542 1235688899873
No 454
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=96.09 E-value=0.21 Score=41.57 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=44.2
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcCC--CeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNI--PIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~--~~~~vvvN~~~~ 228 (294)
+.+-|.|+++.-....+ ....+ ..+|.+|+|.+.+. .++..+..+++.+++... ..+.+|.|+.|.
T Consensus 49 v~l~iwDtaGqe~~~~l-~~~y~--~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL 117 (202)
T cd04120 49 IRLQIWDTAGQERFNSI-TSAYY--RSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 117 (202)
T ss_pred EEEEEEeCCCchhhHHH-HHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 78899999954322111 11222 58999999987655 788888888887765422 246788899984
No 455
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.039 Score=43.72 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=27.3
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
.+..+-|.+|+||||+...|+..+. ....++.+-+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~ 61 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGK 61 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCE
Confidence 3555558999999999999999887 66666655443
No 456
>PHA00729 NTP-binding motif containing protein
Probab=96.08 E-value=0.013 Score=49.35 Aligned_cols=34 Identities=32% Similarity=0.343 Sum_probs=24.5
Q ss_pred HhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 40 KSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 40 ~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
.+.+....-.-.++.|..|+||||+|..||..+.
T Consensus 9 ~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 9 VSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3334443334456667899999999999999875
No 457
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.08 E-value=0.016 Score=50.91 Aligned_cols=44 Identities=25% Similarity=0.291 Sum_probs=34.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
.+.|..+.|..|+||||++..|...+.+...+.+|.++..|...
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 45667777999999999999999888721235589999988654
No 458
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.08 E-value=0.0074 Score=52.84 Aligned_cols=40 Identities=25% Similarity=0.310 Sum_probs=30.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (277)
T PRK13652 29 RNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPI 68 (277)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 333444558999999999999999888 7777887755554
No 459
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.07 E-value=0.0061 Score=52.03 Aligned_cols=38 Identities=32% Similarity=0.447 Sum_probs=28.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~ 83 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGL 83 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCE
Confidence 444555569999999999999999887 66667766443
No 460
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.07 E-value=0.0071 Score=52.70 Aligned_cols=40 Identities=25% Similarity=0.284 Sum_probs=30.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 444555569999999999999999988 6667787655444
No 461
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=96.07 E-value=0.0071 Score=53.03 Aligned_cols=40 Identities=35% Similarity=0.435 Sum_probs=30.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 35 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 35 KGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 334555558999999999999999988 6777787755444
No 462
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.04 E-value=0.013 Score=49.47 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=29.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
...+..+.|.+|+||||+...|+..+. ....+|.+-+.+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~ 70 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGED 70 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEE
Confidence 444556669999999999999999887 666677764433
No 463
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.03 E-value=0.044 Score=54.39 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=45.1
Q ss_pred CcChHHHHhhhc-c--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 33 DPGIELVKSHLS-N--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 33 ~~~~~~i~~~~~-~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
...++.|...+. . ....+..+.|..|+||||++..++.... ..|.+|++||..-.
T Consensus 42 sTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~--~~G~~v~yId~E~t 99 (790)
T PRK09519 42 PTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHA 99 (790)
T ss_pred cCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccc
Confidence 466777887776 2 3577788889999999999999988888 78999999999754
No 464
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.02 E-value=0.0095 Score=58.73 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=35.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPS 92 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~ 92 (294)
+..++++ |++|+||||++..|...+. ....++.+-+.|...-+
T Consensus 499 Ge~vaIv-G~SGsGKSTL~KLL~gly~--p~~G~I~~dg~dl~~i~ 541 (709)
T COG2274 499 GEKVAIV-GRSGSGKSTLLKLLLGLYK--PQQGRILLDGVDLNDID 541 (709)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhcCCC--CCCceEEECCEeHHhcC
Confidence 4455555 9999999999999999999 88889999888776544
No 465
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.01 E-value=0.027 Score=53.75 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=31.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 288 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~ 327 (510)
T PRK09700 288 RGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDI 327 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEEC
Confidence 344555669999999999999999988 6777887755444
No 466
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.01 E-value=0.026 Score=48.22 Aligned_cols=39 Identities=26% Similarity=0.456 Sum_probs=30.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
..+..+-|.+|+||||+...|+..+. ....+|.+-+.|.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 29 GAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 33455558999999999999999988 6777888765554
No 467
>PRK05433 GTP-binding protein LepA; Provisional
Probab=95.99 E-value=0.047 Score=53.12 Aligned_cols=65 Identities=18% Similarity=0.127 Sum_probs=41.8
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
|.+.|+|+|+... ........+ ..+|.+|+|++.....-......+..+...+++ +.+|+|+.|.
T Consensus 74 ~~lnLiDTPGh~d-F~~~v~~sl--~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl 138 (600)
T PRK05433 74 YILNLIDTPGHVD-FSYEVSRSL--AACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDL 138 (600)
T ss_pred EEEEEEECCCcHH-HHHHHHHHH--HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCC
Confidence 8899999996543 222233334 579999999988653222333344444456777 5688999983
No 468
>PLN03130 ABC transporter C family member; Provisional
Probab=95.99 E-value=0.021 Score=61.72 Aligned_cols=44 Identities=30% Similarity=0.384 Sum_probs=35.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM 93 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l 93 (294)
+..|+++ |+.|+||||++..|.+.+. ....+|++-+.|...-++
T Consensus 1265 GekVaIV-GrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~dI~~i~l 1308 (1622)
T PLN03130 1265 SEKVGIV-GRTGAGKSSMLNALFRIVE--LERGRILIDGCDISKFGL 1308 (1622)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCcCC--CCCceEEECCEecccCCH
Confidence 5667777 8899999999999999998 778888887777654343
No 469
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=95.99 E-value=0.13 Score=40.89 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=40.3
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHH-HHHHHHHhcC-CCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVR-KEIDFCRKVN-IPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~-~~l~~l~~~~-~~~~~vvvN~~~~ 228 (294)
+++.|+|+|+.... .......+ ..+|.++++.+.+ ..++..+. .++..++... ...+.+|.|+.|.
T Consensus 47 ~~~~i~Dt~G~~~~-~~~~~~~~--~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl 115 (166)
T cd01893 47 VPTTIVDTSSRPQD-RANLAAEI--RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDL 115 (166)
T ss_pred EEEEEEeCCCchhh-hHHHhhhc--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhc
Confidence 78999999954321 11222233 5789888887664 46666653 4555555432 2246788899884
No 470
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.0035 Score=59.10 Aligned_cols=41 Identities=32% Similarity=0.443 Sum_probs=33.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
.+.++++ |++|+||||+...|+..++ .....+.+-|.|...
T Consensus 347 g~~talv-G~SGaGKSTLl~lL~G~~~--~~~G~I~vng~~l~~ 387 (559)
T COG4988 347 GQLTALV-GASGAGKSTLLNLLLGFLA--PTQGEIRVNGIDLRD 387 (559)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHhCcCC--CCCceEEECCccccc
Confidence 4445555 8999999999999999999 788888888777654
No 471
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=95.97 E-value=0.0079 Score=50.66 Aligned_cols=36 Identities=25% Similarity=0.484 Sum_probs=27.7
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
.+..+.|.+|+||||+...|+..+. ....+|.+-+-
T Consensus 32 ~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~ 67 (220)
T TIGR02982 32 EIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQ 67 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCE
Confidence 3444558999999999999999888 66777766443
No 472
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.96 E-value=0.019 Score=50.50 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=37.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcC-----CCCcEEEEecCCCCCChh---hhccccccccccc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSN-----ESVDVGVLDLDICGPSMP---RMMGLLNEQVHQS 107 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~-----~g~~VlliD~D~~~~~l~---~~lg~~~~~~~~~ 107 (294)
+.+++++ |.+|+||||++..+...|. . .+.++.+-+-|...-+-. .+.|.+...++++
T Consensus 31 GE~lgiV-GESGsGKS~~~~aim~llp--~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 31 GEILGIV-GESGSGKSVLAKAIMGLLP--KPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHhccC--CCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4556666 8899999999999999997 3 233555555554332322 3456666666554
No 473
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.94 E-value=0.022 Score=47.83 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=28.7
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
..+..+.|.+|+||||+...|+..+. ....+|.+-+.+
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~ 74 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKT 74 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEE
Confidence 33455558899999999999999988 666677765443
No 474
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=95.94 E-value=0.25 Score=39.68 Aligned_cols=66 Identities=18% Similarity=0.122 Sum_probs=43.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcCC---CeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNI---PIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~---~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+......+ ....+ ..+|.++++.+.+. .++.....++..+.+... ..+.+|.|+.|.
T Consensus 49 ~~l~i~Dt~G~~~~~~~-~~~~~--~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl 118 (170)
T cd04108 49 FSLQLWDTAGQERFKCI-ASTYY--RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDL 118 (170)
T ss_pred EEEEEEeCCChHHHHhh-HHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhc
Confidence 67889999954321111 11222 58999999988844 577778887877644322 246789999984
No 475
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.94 E-value=0.0094 Score=51.32 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=28.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
...+..+.|.+|+||||+...|+..+. ....+|.+-+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~ 62 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGE 62 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCE
Confidence 334455559999999999999999988 66677776443
No 476
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.94 E-value=0.025 Score=48.95 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=27.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEE
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV 83 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vll 83 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~ 71 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLA 71 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEE
Confidence 333555558999999999999999988 66777764
No 477
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.94 E-value=0.039 Score=45.40 Aligned_cols=41 Identities=24% Similarity=0.496 Sum_probs=32.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
+++-+++ |.+|+||||+-..+++.+. .....|.+-..|...
T Consensus 27 g~iTs~I-GPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~ 67 (252)
T COG4604 27 GGITSII-GPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTS 67 (252)
T ss_pred CceeEEE-CCCCccHHHHHHHHHHhcc--ccCceEEEeeeeccc
Confidence 4444554 8899999999999999999 777788887777654
No 478
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=95.94 E-value=0.051 Score=53.42 Aligned_cols=85 Identities=20% Similarity=0.071 Sum_probs=65.2
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i 239 (294)
|.+-|||||+..+ ....+...| ..+|..|+|++....-.-.+..+++++.+.+++.+ +++|++|. +
T Consensus 76 ~~iNlIDTPGHVD-Ft~EV~rsl--rvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i-~fiNKmDR----------~ 141 (697)
T COG0480 76 YRINLIDTPGHVD-FTIEVERSL--RVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRI-LFVNKMDR----------L 141 (697)
T ss_pred eEEEEeCCCCccc-cHHHHHHHH--HhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeE-EEEECccc----------c
Confidence 8999999997765 334455555 67899999999999888899999999999999954 88899983 2
Q ss_pred CCCCchhHHHHHhhcCCce
Q psy11347 240 FPKDSGGAEKMCAELSVPF 258 (294)
Q Consensus 240 ~~~~~~~~~~~~~~~g~~~ 258 (294)
..++....+++.+.++.+.
T Consensus 142 ~a~~~~~~~~l~~~l~~~~ 160 (697)
T COG0480 142 GADFYLVVEQLKERLGANP 160 (697)
T ss_pred ccChhhhHHHHHHHhCCCc
Confidence 3344556677777766533
No 479
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.94 E-value=0.0098 Score=48.51 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=27.9
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
.++.|..|+|||.+|..+|..+. ..|++|+++..
T Consensus 50 l~l~G~~G~GKThLa~ai~~~~~--~~g~~v~f~~~ 83 (178)
T PF01695_consen 50 LILYGPPGTGKTHLAVAIANEAI--RKGYSVLFITA 83 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEH
T ss_pred EEEEhhHhHHHHHHHHHHHHHhc--cCCcceeEeec
Confidence 44456789999999999999999 79999999976
No 480
>PRK05439 pantothenate kinase; Provisional
Probab=95.93 E-value=0.015 Score=51.59 Aligned_cols=43 Identities=28% Similarity=0.311 Sum_probs=34.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
...+..++|..|+||||+|..|+..|.+...+.+|.++..|--
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 4556667799999999999999999982124789999999854
No 481
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=95.93 E-value=0.056 Score=49.48 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=97.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHH---HhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEE
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARV---LAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVM 123 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~---la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (294)
.+.++|+| ....|||||+-.|..+ ++ ..| .|--= - .-....+.|..+....++++.
T Consensus 12 RRTFAIIS-HPDAGKTTlTEkLLlfGgaIq--~AG-~Vk~r---k--------------~~~~a~SDWM~iEkqRGISVt 70 (528)
T COG4108 12 RRTFAIIS-HPDAGKTTLTEKLLLFGGAIQ--EAG-TVKGR---K--------------SGKHAKSDWMEIEKQRGISVT 70 (528)
T ss_pred hcceeEEe-cCCCCcccHHHHHHHhcchhh--hcc-eeeec---c--------------CCcccccHHHHHHHhcCceEE
Confidence 45677775 5679999999887654 33 222 11000 0 001234567777777888876
Q ss_pred ecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCC--CChHHHHHHHHhhcCCCcEEEEecCCchhhH
Q psy11347 124 SIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPG--TSDEHLSLVQYLKGLPDIGAIVVTTPQEVSL 201 (294)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~--~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~ 201 (294)
.+-..... +++-+=|+|||+. .+.+++.++ .++|..|+|++....--
T Consensus 71 sSVMqF~Y--------------------------~~~~iNLLDTPGHeDFSEDTYRtL-----tAvDsAvMVIDaAKGiE 119 (528)
T COG4108 71 SSVMQFDY--------------------------ADCLVNLLDTPGHEDFSEDTYRTL-----TAVDSAVMVIDAAKGIE 119 (528)
T ss_pred eeEEEecc--------------------------CCeEEeccCCCCccccchhHHHHH-----HhhheeeEEEecccCcc
Confidence 54322110 1256778999965 456667777 46799999998877666
Q ss_pred HHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 202 LDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 202 ~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+..+.+.++..+++++ -.+|+.+. . .+.-.+.++++.+.+++...
T Consensus 120 ~qT~KLfeVcrlR~iPI~-TFiNKlDR------~----~rdP~ELLdEiE~~L~i~~~ 166 (528)
T COG4108 120 PQTLKLFEVCRLRDIPIF-TFINKLDR------E----GRDPLELLDEIEEELGIQCA 166 (528)
T ss_pred HHHHHHHHHHhhcCCceE-EEeecccc------c----cCChHHHHHHHHHHhCccee
Confidence 778888888899999954 66899884 2 22334678899888876544
No 482
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.92 E-value=0.0075 Score=53.14 Aligned_cols=40 Identities=33% Similarity=0.345 Sum_probs=30.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 70 (288)
T PRK13643 31 KGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVV 70 (288)
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 333445558999999999999999988 7777887755554
No 483
>PTZ00035 Rad51 protein; Provisional
Probab=95.91 E-value=0.029 Score=50.50 Aligned_cols=55 Identities=16% Similarity=0.105 Sum_probs=41.7
Q ss_pred CcChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcC------CCCcEEEEecCCC
Q psy11347 33 DPGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSN------ESVDVGVLDLDIC 89 (294)
Q Consensus 33 ~~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~------~g~~VlliD~D~~ 89 (294)
....+.|...+.. ....+.-+.|..|+||||++..++.... . .+.+|++||....
T Consensus 101 sTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~q--lp~~~gg~~g~vvyIdtE~~ 163 (337)
T PTZ00035 101 TTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQ--LPIEQGGGEGKVLYIDTEGT 163 (337)
T ss_pred cCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhc--cccccCCCCceEEEEEccCC
Confidence 3556777776654 3567777778999999999999987655 3 5679999998653
No 484
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.90 E-value=0.01 Score=49.05 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=28.4
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
..+.|.+|+||||++..|+..+. +.++.++..|..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~----~~~~~v~~~D~~ 36 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLG----NPKVVIISQDSY 36 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC----CCCeEEEEeccc
Confidence 45668899999999999999885 457888888853
No 485
>PRK07004 replicative DNA helicase; Provisional
Probab=95.89 E-value=0.004 Score=58.47 Aligned_cols=57 Identities=18% Similarity=0.365 Sum_probs=43.6
Q ss_pred CcChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 33 DPGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 33 ~~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
...++.|.+.+.. ....+.++++..|+|||+++.++|...+ ...|++|+++-+....
T Consensus 197 ~TG~~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a-~~~~~~v~~fSlEM~~ 254 (460)
T PRK07004 197 PTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVA-VEYGLPVAVFSMEMPG 254 (460)
T ss_pred cCCcHHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHH-HHcCCeEEEEeCCCCH
Confidence 3455666655443 3566889999999999999999999887 2468999999887653
No 486
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.89 E-value=0.0098 Score=52.25 Aligned_cols=40 Identities=30% Similarity=0.284 Sum_probs=31.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.|.
T Consensus 31 ~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 31 KGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 333445558999999999999999998 7777887766554
No 487
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.054 Score=45.54 Aligned_cols=43 Identities=21% Similarity=0.167 Sum_probs=28.1
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
....+-++-|.+|+||||++..|+..=.=.-...+|++-.-|.
T Consensus 28 ~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI 70 (251)
T COG0396 28 KEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI 70 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccc
Confidence 3555666679999999999998887532003444566554444
No 488
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=95.88 E-value=0.011 Score=50.47 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=28.2
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
..+..+-|.+|+||||+...|+..+. ....+|.+-+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~ 63 (237)
T TIGR00968 26 GSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQD 63 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 33444458999999999999999888 666677654433
No 489
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=95.88 E-value=0.31 Score=38.51 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=40.3
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHh----cCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRK----VNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~ 228 (294)
+.+.++|+|+..... ......+ ..+|.++++++... .++......+..+.+ .+.+ +.+|+|+.+.
T Consensus 50 ~~~~l~Dt~G~~~~~-~~~~~~~--~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~ 119 (167)
T cd04160 50 ARLKFWDLGGQESLR-SLWDKYY--AECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVP-LLILANKQDL 119 (167)
T ss_pred EEEEEEECCCChhhH-HHHHHHh--CCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCC-EEEEEEcccc
Confidence 789999999543211 1112223 68999999988764 345555555554432 2445 6689999883
No 490
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=95.88 E-value=0.0076 Score=54.06 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=27.1
Q ss_pred ecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 54 SGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 54 s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
-|.+|+||||+...||..+. ....+|.+-+.+.
T Consensus 2 ~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i 34 (325)
T TIGR01187 2 LGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDV 34 (325)
T ss_pred cCCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 47899999999999999988 6777887755444
No 491
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.87 E-value=0.012 Score=52.68 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=30.3
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
..+..+.|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 52 Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 52 NKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 33455558999999999999999998 7777887755443
No 492
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=95.87 E-value=0.15 Score=40.36 Aligned_cols=66 Identities=17% Similarity=0.070 Sum_probs=40.0
Q ss_pred ccEEEEcCCCCCCh-------HH---HHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSD-------EH---LSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~-------~~---~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
.++.++|+|+.... +. ......+ ..+|.++++++...........++..+...+.+ +.+++|+++.
T Consensus 50 ~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl 125 (174)
T cd01895 50 KKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAI--ERADVVLLVIDATEGITEQDLRIAGLILEEGKA-LVIVVNKWDL 125 (174)
T ss_pred eeEEEEECCCCccccchhccHHHHHHHHHHHHH--hhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCC-EEEEEecccc
Confidence 56889999963211 11 1122223 478989999887554333444556666656655 5688999873
No 493
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=95.86 E-value=0.0072 Score=59.93 Aligned_cols=41 Identities=32% Similarity=0.394 Sum_probs=32.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
+..++++ |++|+||||+...|+..+. ....+|.+-+.|...
T Consensus 483 G~~vaiv-G~sGsGKSTL~~ll~g~~~--p~~G~I~idg~~i~~ 523 (694)
T TIGR01846 483 GEFIGIV-GPSGSGKSTLTKLLQRLYT--PQHGQVLVDGVDLAI 523 (694)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhcCCC--CCCceEEECCEehhh
Confidence 4455555 8999999999999999999 778888886666543
No 494
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.85 E-value=0.0098 Score=50.69 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=29.9
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
..+..+-|.+|+||||+...|+..+. .....|.+-+.+.
T Consensus 25 Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~ 63 (235)
T cd03299 25 GDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDI 63 (235)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEc
Confidence 33444558999999999999999988 7777777765544
No 495
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.85 E-value=0.036 Score=46.73 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=24.8
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
...++-|+.|+||||+|..| + .++++++.|..
T Consensus 13 ~~~liyG~~G~GKtt~a~~~----~-----~~~~~~~~d~~ 44 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYL----P-----GKTLVLSFDMS 44 (220)
T ss_pred cEEEEECCCCCCHHHHHHhc----C-----CCCEEEecccc
Confidence 44677799999999987766 3 26889999874
No 496
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.84 E-value=0.28 Score=38.62 Aligned_cols=66 Identities=11% Similarity=0.070 Sum_probs=42.6
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC-------CCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN-------IPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~-------~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+.-. ......... ..+|.+|++.+.+. .++.....++..+.+.. ...+.+|.|+.+.
T Consensus 49 ~~l~i~Dt~G~~~--~~~~~~~~~-~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 122 (168)
T cd04119 49 VRVNFFDLSGHPE--YLEVRNEFY-KDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDL 122 (168)
T ss_pred EEEEEEECCccHH--HHHHHHHHh-ccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence 7889999996422 222222222 57899999987754 56667777777665431 2346788999883
No 497
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=95.84 E-value=0.14 Score=41.59 Aligned_cols=150 Identities=15% Similarity=0.096 Sum_probs=75.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
.+-+..+.+..|=||||-|..+|.... -.|+||+++-+=-.. ...|... ..... ..++.+.-.+
T Consensus 27 ~~Gli~V~TG~GKGKTTAAlG~alRa~--GhG~rv~vvQFiKg~----~~~GE~~--~~~~~--------~~~v~~~~~~ 90 (198)
T COG2109 27 EKGLIIVFTGNGKGKTTAALGLALRAL--GHGLRVGVVQFIKGG----WKYGEEA--ALEKF--------GLGVEFHGMG 90 (198)
T ss_pred ccCeEEEEecCCCChhHHHHHHHHHHh--cCCCEEEEEEEeecC----cchhHHH--HHHhh--------ccceeEEecC
Confidence 344555556678999999999999998 899999998652111 0000000 00000 1223333322
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCC-----CCChHHHHHHHHhhc-CCCcEEEEecCCchhh
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPP-----GTSDEHLSLVQYLKG-LPDIGAIVVTTPQEVS 200 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~-----~~~~~~~~~~~~l~~-~~ad~vliv~~~~~~s 200 (294)
....................+....+.+... .||+||+|.-. ++-+ .-.++..+.. ..-.+||+.-.....+
T Consensus 91 ~g~tw~~~~~~~d~~aa~~~w~~a~~~l~~~-~ydlviLDEl~~al~~g~l~-~eeV~~~l~~kP~~~~vIiTGr~ap~~ 168 (198)
T COG2109 91 EGFTWETQDREADIAAAKAGWEHAKEALADG-KYDLVILDELNYALRYGLLP-LEEVVALLKARPEHTHVIITGRGAPPE 168 (198)
T ss_pred CceeCCCcCcHHHHHHHHHHHHHHHHHHhCC-CCCEEEEehhhHHHHcCCCC-HHHHHHHHhcCCCCcEEEEECCCCCHH
Confidence 1111111100000011222344444445433 49999999872 1211 1123333322 2344455555556688
Q ss_pred HHHHHHHHHHHHhc
Q psy11347 201 LLDVRKEIDFCRKV 214 (294)
Q Consensus 201 ~~~~~~~l~~l~~~ 214 (294)
+-+...++..++..
T Consensus 169 lie~ADlVTEm~~v 182 (198)
T COG2109 169 LIELADLVTEMRLV 182 (198)
T ss_pred HHHHHHHHhhcccc
Confidence 88888888877644
No 498
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.84 E-value=0.013 Score=49.40 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=29.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~ 62 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGH 62 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCE
Confidence 344555558999999999999999887 66667776443
No 499
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=95.83 E-value=0.0097 Score=54.18 Aligned_cols=38 Identities=29% Similarity=0.504 Sum_probs=29.5
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCC--CcEEEEecCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNES--VDVGVLDLDI 88 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g--~~VlliD~D~ 88 (294)
.+..+-|.+|+||||+...||..+. ... .+|.+-+.+.
T Consensus 32 e~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~~~ 71 (362)
T TIGR03258 32 ELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADRDL 71 (362)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCEEC
Confidence 3455558899999999999999888 666 7777765554
No 500
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=95.82 E-value=0.024 Score=53.93 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=28.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcC--CCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSN--ESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~--~g~~VlliD~D~ 88 (294)
...+..+.|.+|+||||+...|+..+. . ...+|.+-+.+.
T Consensus 26 ~Ge~~~liG~nGsGKSTLl~~i~G~~~--~~~~~G~i~~~g~~~ 67 (500)
T TIGR02633 26 PGECVGLCGENGAGKSTLMKILSGVYP--HGTWDGEIYWSGSPL 67 (500)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCCeEEEECCEEC
Confidence 344555559999999999999999776 4 356676655443
Done!