Query psy11347
Match_columns 294
No_of_seqs 141 out of 1968
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 16:04:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11347.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11347hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ph1_A Nucleotide-binding prot 100.0 3.9E-33 1.3E-37 241.2 21.4 237 36-280 7-244 (262)
2 3q9l_A Septum site-determining 100.0 4.2E-32 1.4E-36 233.9 15.8 225 46-294 1-244 (260)
3 1g3q_A MIND ATPase, cell divis 100.0 7.9E-32 2.7E-36 229.2 16.9 221 46-294 1-231 (237)
4 3ea0_A ATPase, para family; al 100.0 2.1E-31 7.2E-36 227.6 15.6 221 45-294 2-240 (245)
5 1hyq_A MIND, cell division inh 100.0 3.3E-31 1.1E-35 228.9 14.4 221 46-294 1-230 (263)
6 4dzz_A Plasmid partitioning pr 100.0 8.3E-30 2.9E-34 211.9 16.3 192 47-294 1-199 (206)
7 3end_A Light-independent proto 100.0 1E-29 3.5E-34 224.6 17.8 221 46-294 40-281 (307)
8 1wcv_1 SOJ, segregation protei 100.0 1.2E-30 4.1E-35 224.9 10.7 223 45-294 4-240 (257)
9 3kjh_A CO dehydrogenase/acetyl 100.0 3.9E-29 1.3E-33 214.0 19.7 216 49-294 2-247 (254)
10 3fwy_A Light-independent proto 100.0 2E-29 6.8E-34 222.6 17.9 222 46-294 47-288 (314)
11 1cp2_A CP2, nitrogenase iron p 100.0 8.2E-30 2.8E-34 220.9 15.0 226 47-294 1-242 (269)
12 2afh_E Nitrogenase iron protei 100.0 1.6E-29 5.6E-34 221.4 14.2 226 47-294 2-245 (289)
13 3k9g_A PF-32 protein; ssgcid, 100.0 1.2E-28 4E-33 213.5 19.1 225 42-293 22-260 (267)
14 2xj4_A MIPZ; replication, cell 100.0 1.2E-29 4.1E-34 222.0 5.5 221 46-294 3-262 (286)
15 2oze_A ORF delta'; para, walke 100.0 1.1E-28 3.8E-33 217.0 11.2 239 36-294 23-284 (298)
16 3cwq_A Para family chromosome 99.9 3E-27 1E-31 197.5 15.8 185 48-294 1-193 (209)
17 3pg5_A Uncharacterized protein 99.9 5.3E-27 1.8E-31 211.6 17.2 238 47-293 1-342 (361)
18 3ez2_A Plasmid partition prote 99.9 1.5E-26 5.2E-31 211.4 11.2 232 45-293 106-385 (398)
19 3ez9_A Para; DNA binding, wing 99.9 3E-26 1E-30 209.8 11.2 231 44-293 108-388 (403)
20 3la6_A Tyrosine-protein kinase 99.9 3.4E-25 1.2E-29 193.3 15.0 180 35-228 75-266 (286)
21 3bfv_A CAPA1, CAPB2, membrane 99.9 1.2E-24 3.9E-29 188.7 12.3 180 35-228 65-256 (271)
22 3fkq_A NTRC-like two-domain pr 99.9 7.8E-25 2.7E-29 198.3 10.0 197 45-269 141-354 (373)
23 3cio_A ETK, tyrosine-protein k 99.9 3.4E-24 1.1E-28 188.4 10.9 170 45-228 102-278 (299)
24 3zq6_A Putative arsenical pump 99.9 1.8E-23 6.1E-28 185.9 11.9 213 47-266 13-301 (324)
25 3ug7_A Arsenical pump-driving 99.9 5.9E-23 2E-27 184.2 15.0 211 45-268 23-318 (349)
26 2woj_A ATPase GET3; tail-ancho 99.9 2E-22 6.8E-27 180.9 11.5 182 42-227 12-275 (354)
27 3iqw_A Tail-anchored protein t 99.9 1.1E-21 3.7E-26 174.4 9.5 178 39-227 7-262 (334)
28 2woo_A ATPase GET3; tail-ancho 99.8 1.6E-21 5.6E-26 173.5 9.7 176 44-227 15-261 (329)
29 3io3_A DEHA2D07832P; chaperone 99.8 1.9E-20 6.5E-25 167.2 9.7 189 39-228 9-272 (348)
30 1byi_A Dethiobiotin synthase; 99.8 1E-19 3.5E-24 153.0 13.5 197 47-267 1-208 (224)
31 1ihu_A Arsenical pump-driving 99.8 1.8E-19 6E-24 172.5 4.2 186 33-228 312-531 (589)
32 3igf_A ALL4481 protein; two-do 99.7 1.5E-17 5.1E-22 149.5 14.7 166 47-225 1-252 (374)
33 1ihu_A Arsenical pump-driving 99.7 1.8E-17 6.1E-22 158.6 11.3 171 47-228 7-239 (589)
34 3of5_A Dethiobiotin synthetase 99.6 2.7E-15 9.1E-20 126.4 10.9 194 45-264 2-207 (228)
35 2xxa_A Signal recognition part 99.6 9.6E-15 3.3E-19 133.9 14.7 168 47-259 100-271 (433)
36 3qxc_A Dethiobiotin synthetase 99.6 9.1E-15 3.1E-19 123.9 11.6 208 40-275 14-241 (242)
37 1j8m_F SRP54, signal recogniti 99.6 4.2E-14 1.4E-18 123.6 14.9 166 47-259 98-270 (297)
38 3fgn_A Dethiobiotin synthetase 99.5 9.3E-14 3.2E-18 118.3 14.0 200 39-267 18-226 (251)
39 1ls1_A Signal recognition part 99.5 1.8E-13 6.1E-18 119.6 14.4 169 46-259 97-268 (295)
40 1zu4_A FTSY; GTPase, signal re 99.5 2E-13 6.7E-18 120.6 14.5 172 47-259 105-285 (320)
41 2ffh_A Protein (FFH); SRP54, s 99.5 2.8E-13 9.6E-18 123.5 14.0 168 47-259 98-268 (425)
42 3dm5_A SRP54, signal recogniti 99.4 9.1E-12 3.1E-16 113.8 17.0 168 47-259 100-270 (443)
43 1yrb_A ATP(GTP)binding protein 99.4 3.2E-13 1.1E-17 115.7 5.9 45 46-93 12-56 (262)
44 2v3c_C SRP54, signal recogniti 99.4 9.2E-12 3.2E-16 114.1 15.0 166 48-259 100-269 (432)
45 2j37_W Signal recognition part 99.3 1.2E-11 4.1E-16 115.1 12.7 149 47-228 101-252 (504)
46 3kl4_A SRP54, signal recogniti 99.2 7.6E-11 2.6E-15 107.6 13.6 168 48-259 97-269 (433)
47 1vma_A Cell division protein F 99.2 2.1E-10 7.3E-15 100.4 15.1 169 46-259 103-280 (306)
48 2px0_A Flagellar biosynthesis 99.2 2.3E-10 7.8E-15 99.9 14.4 163 47-259 105-270 (296)
49 3p32_A Probable GTPase RV1496/ 99.1 1.4E-10 4.7E-15 104.0 7.7 149 49-228 80-229 (355)
50 2r8r_A Sensor protein; KDPD, P 99.0 4.1E-09 1.4E-13 87.5 11.0 43 47-91 5-47 (228)
51 4a0g_A Adenosylmethionine-8-am 98.8 1.2E-08 4.2E-13 100.7 10.3 92 159-267 201-299 (831)
52 2obn_A Hypothetical protein; s 98.6 9.9E-08 3.4E-12 84.2 7.8 175 47-270 152-344 (349)
53 2p67_A LAO/AO transport system 98.6 4.8E-07 1.6E-11 80.4 12.0 150 47-228 56-206 (341)
54 2yhs_A FTSY, cell division pro 98.5 1.9E-06 6.4E-11 79.6 15.1 167 47-259 293-469 (503)
55 3e70_C DPA, signal recognition 98.4 2.4E-06 8.3E-11 75.3 12.7 167 47-259 129-299 (328)
56 1rj9_A FTSY, signal recognitio 98.2 4.3E-05 1.5E-09 66.6 15.7 41 47-90 102-142 (304)
57 2www_A Methylmalonic aciduria 98.1 3.4E-05 1.2E-09 68.6 12.8 42 48-91 74-115 (349)
58 2rdo_7 EF-G, elongation factor 97.9 9.8E-05 3.4E-09 71.7 11.9 86 159-258 81-166 (704)
59 2og2_A Putative signal recogni 97.7 0.00076 2.6E-08 60.0 14.8 41 47-90 157-197 (359)
60 3b9q_A Chloroplast SRP recepto 97.7 0.00073 2.5E-08 58.7 14.2 41 47-90 100-140 (302)
61 1u94_A RECA protein, recombina 97.7 9.8E-05 3.3E-09 65.8 8.7 55 33-89 45-102 (356)
62 3pzx_A Formate--tetrahydrofola 97.7 4.6E-05 1.6E-09 69.3 5.6 52 46-102 56-110 (557)
63 2h5e_A Peptide chain release f 97.7 7.5E-05 2.6E-09 70.0 7.3 86 160-259 82-167 (529)
64 1xp8_A RECA protein, recombina 97.6 0.00025 8.5E-09 63.3 10.0 55 33-89 56-113 (366)
65 2w0m_A SSO2452; RECA, SSPF, un 97.6 0.00021 7.3E-09 58.9 8.8 53 35-89 8-62 (235)
66 2qm8_A GTPase/ATPase; G protei 97.6 0.00038 1.3E-08 61.5 10.6 42 47-90 54-95 (337)
67 1xjc_A MOBB protein homolog; s 97.5 9.9E-05 3.4E-09 58.5 5.2 42 46-90 3-44 (169)
68 1g5t_A COB(I)alamin adenosyltr 97.5 0.00021 7E-09 57.9 6.4 39 47-88 28-66 (196)
69 2zr9_A Protein RECA, recombina 97.5 0.00045 1.6E-08 61.3 9.1 55 33-89 43-100 (349)
70 3jvv_A Twitching mobility prot 97.4 0.0017 5.9E-08 57.7 12.6 42 42-85 117-159 (356)
71 2c78_A Elongation factor TU-A; 97.4 0.0013 4.4E-08 59.5 11.6 66 160-228 75-140 (405)
72 1np6_A Molybdopterin-guanine d 97.4 0.00074 2.5E-08 53.7 8.6 42 46-90 5-46 (174)
73 3p26_A Elongation factor 1 alp 97.4 0.0018 6.2E-08 60.0 12.5 66 160-228 111-183 (483)
74 2yvu_A Probable adenylyl-sulfa 97.3 0.00017 5.6E-09 57.8 4.6 45 42-88 7-51 (186)
75 3con_A GTPase NRAS; structural 97.3 0.0035 1.2E-07 49.7 12.2 87 160-259 69-160 (190)
76 2ce2_X GTPase HRAS; signaling 97.3 0.0056 1.9E-07 46.8 13.0 87 160-259 51-142 (166)
77 3tr5_A RF-3, peptide chain rel 97.3 0.00018 6E-09 67.5 4.6 86 160-259 82-167 (528)
78 2g0t_A Conserved hypothetical 97.3 0.00082 2.8E-08 59.3 8.6 141 46-225 168-323 (350)
79 2b8t_A Thymidine kinase; deoxy 97.3 0.002 6.9E-08 53.3 10.3 38 47-86 11-48 (223)
80 1d2e_A Elongation factor TU (E 97.2 0.0017 5.7E-08 58.7 10.4 66 160-228 66-131 (397)
81 3clv_A RAB5 protein, putative; 97.2 0.0065 2.2E-07 48.3 12.9 88 160-259 93-181 (208)
82 2eyu_A Twitching motility prot 97.2 0.0033 1.1E-07 53.4 11.4 43 43-87 20-63 (261)
83 1dar_A EF-G, elongation factor 97.2 0.0014 4.7E-08 63.5 10.1 85 160-258 77-161 (691)
84 3iby_A Ferrous iron transport 97.2 0.0016 5.3E-08 55.2 9.2 89 160-260 48-145 (256)
85 2xex_A Elongation factor G; GT 97.2 0.001 3.4E-08 64.5 8.7 84 160-257 75-158 (693)
86 2kjq_A DNAA-related protein; s 97.2 0.002 6.9E-08 49.7 8.7 39 47-87 35-73 (149)
87 1xx6_A Thymidine kinase; NESG, 97.1 0.0045 1.5E-07 49.9 11.0 36 48-85 8-43 (191)
88 3hr8_A Protein RECA; alpha and 97.1 0.0047 1.6E-07 54.8 12.0 55 33-89 43-100 (356)
89 1ji0_A ABC transporter; ATP bi 97.1 0.00018 6.2E-09 60.4 2.8 39 49-89 33-71 (240)
90 3sjy_A Translation initiation 97.1 0.0015 5.2E-08 59.0 8.4 66 160-228 75-141 (403)
91 3tui_C Methionine import ATP-b 97.0 0.00012 4.1E-09 65.2 0.5 40 49-90 55-94 (366)
92 3io5_A Recombination and repai 97.0 0.013 4.3E-07 51.1 13.0 53 34-89 9-69 (333)
93 3j25_A Tetracycline resistance 97.0 0.0013 4.6E-08 63.0 7.6 85 160-258 67-151 (638)
94 2efe_B Small GTP-binding prote 97.0 0.011 3.6E-07 46.3 11.7 89 160-259 61-152 (181)
95 2fg5_A RAB-22B, RAS-related pr 97.0 0.011 3.9E-07 46.9 11.8 89 160-259 72-163 (192)
96 2wsm_A Hydrogenase expression/ 97.0 0.0012 4.2E-08 54.0 6.1 39 47-89 30-68 (221)
97 2orw_A Thymidine kinase; TMTK, 96.9 0.0018 6.2E-08 51.9 6.7 37 48-86 3-39 (184)
98 3t1o_A Gliding protein MGLA; G 96.9 0.028 9.7E-07 44.3 14.0 86 160-259 74-169 (198)
99 2ewv_A Twitching motility prot 96.9 0.0048 1.7E-07 55.1 10.2 39 46-86 134-173 (372)
100 3j2k_7 ERF3, eukaryotic polype 96.9 0.004 1.4E-07 57.0 9.8 66 160-228 95-167 (439)
101 1g6h_A High-affinity branched- 96.9 0.00017 5.8E-09 61.3 0.5 38 49-88 34-71 (257)
102 2hxs_A RAB-26, RAS-related pro 96.9 0.017 5.7E-07 45.0 12.0 89 160-259 56-150 (178)
103 1z0j_A RAB-22, RAS-related pro 96.9 0.011 3.8E-07 45.5 10.9 89 160-259 55-146 (170)
104 2olj_A Amino acid ABC transpor 96.9 0.00016 5.4E-09 61.6 -0.0 38 49-88 51-88 (263)
105 1ek0_A Protein (GTP-binding pr 96.9 0.021 7.2E-07 43.8 12.3 92 160-259 52-146 (170)
106 4fn5_A EF-G 1, elongation fact 96.8 0.0046 1.6E-07 60.0 9.8 87 159-259 84-170 (709)
107 1vpl_A ABC transporter, ATP-bi 96.8 0.00013 4.6E-09 61.8 -0.9 38 49-88 42-79 (256)
108 3tif_A Uncharacterized ABC tra 96.8 0.00032 1.1E-08 58.7 1.4 41 48-90 31-71 (235)
109 3oes_A GTPase rhebl1; small GT 96.8 0.006 2.1E-07 49.0 9.1 88 160-259 72-164 (201)
110 3bc1_A RAS-related protein RAB 96.8 0.023 7.7E-07 44.8 12.4 88 160-259 70-162 (195)
111 2f1r_A Molybdopterin-guanine d 96.8 0.0011 3.7E-08 52.6 4.3 41 46-89 1-41 (171)
112 1z0f_A RAB14, member RAS oncog 96.8 0.016 5.5E-07 45.0 11.3 89 160-259 64-155 (179)
113 1z2a_A RAS-related protein RAB 96.8 0.0074 2.5E-07 46.4 9.1 88 160-259 54-144 (168)
114 2yyz_A Sugar ABC transporter, 96.8 0.00046 1.6E-08 61.4 2.0 39 49-89 30-68 (359)
115 3rlf_A Maltose/maltodextrin im 96.8 0.00039 1.4E-08 62.2 1.6 39 49-89 30-68 (381)
116 1jny_A EF-1-alpha, elongation 96.7 0.0088 3E-07 54.5 10.6 66 160-228 84-156 (435)
117 2oil_A CATX-8, RAS-related pro 96.7 0.012 4.3E-07 46.6 10.4 89 160-259 74-165 (193)
118 2ehv_A Hypothetical protein PH 96.7 0.0015 5.1E-08 54.4 5.1 39 47-88 29-69 (251)
119 2onk_A Molybdate/tungstate ABC 96.7 0.00064 2.2E-08 57.1 2.7 38 49-88 25-62 (240)
120 1rz3_A Hypothetical protein rb 96.7 0.0016 5.3E-08 52.9 5.0 42 47-90 21-62 (201)
121 3uie_A Adenylyl-sulfate kinase 96.7 0.0021 7.2E-08 52.0 5.7 47 40-88 17-63 (200)
122 1g16_A RAS-related protein SEC 96.7 0.011 3.8E-07 45.5 9.6 88 160-259 52-142 (170)
123 1wf3_A GTP-binding protein; GT 96.7 0.014 4.8E-07 50.5 11.0 66 160-228 55-129 (301)
124 2j9r_A Thymidine kinase; TK1, 96.7 0.0041 1.4E-07 51.0 7.1 38 47-86 27-64 (214)
125 1r2q_A RAS-related protein RAB 96.7 0.011 3.8E-07 45.5 9.4 89 160-259 55-146 (170)
126 2hf9_A Probable hydrogenase ni 96.7 0.0027 9.1E-08 52.1 6.0 48 38-89 28-76 (226)
127 2ew1_A RAS-related protein RAB 96.7 0.024 8.2E-07 45.7 11.6 89 160-259 75-166 (201)
128 3fvq_A Fe(3+) IONS import ATP- 96.7 0.0011 3.7E-08 59.0 3.7 38 49-88 31-68 (359)
129 1z47_A CYSA, putative ABC-tran 96.6 0.00054 1.9E-08 60.8 1.7 39 48-88 41-79 (355)
130 3tkl_A RAS-related protein RAB 96.6 0.023 7.9E-07 45.0 11.2 89 160-259 65-156 (196)
131 1v43_A Sugar-binding transport 96.6 0.0016 5.5E-08 58.1 4.6 39 48-88 37-75 (372)
132 2pcj_A ABC transporter, lipopr 96.6 0.00078 2.7E-08 55.9 2.4 38 50-89 32-69 (224)
133 3iev_A GTP-binding protein ERA 96.6 0.0094 3.2E-07 51.7 9.4 66 160-228 59-134 (308)
134 3dz8_A RAS-related protein RAB 96.6 0.011 3.9E-07 46.9 9.2 89 160-259 72-163 (191)
135 1z06_A RAS-related protein RAB 96.6 0.032 1.1E-06 44.0 11.7 89 160-259 69-162 (189)
136 3gfo_A Cobalt import ATP-bindi 96.6 0.00015 5E-09 62.2 -2.4 38 49-88 35-72 (275)
137 3sop_A Neuronal-specific septi 96.6 0.022 7.6E-07 48.4 11.3 36 50-88 5-40 (270)
138 2dr3_A UPF0273 protein PH0284; 96.6 0.0025 8.4E-08 52.9 5.2 41 47-89 22-62 (247)
139 2q6t_A DNAB replication FORK h 96.6 0.00055 1.9E-08 62.8 1.1 54 34-89 185-240 (444)
140 2dyk_A GTP-binding protein; GT 96.5 0.0048 1.6E-07 47.2 6.4 66 160-228 49-120 (161)
141 1u8z_A RAS-related protein RAL 96.5 0.049 1.7E-06 41.5 12.3 88 160-259 52-144 (168)
142 2it1_A 362AA long hypothetical 96.5 0.00048 1.7E-08 61.3 0.6 40 48-89 29-68 (362)
143 1zbd_A Rabphilin-3A; G protein 96.5 0.018 6.2E-07 46.0 10.1 89 160-259 57-148 (203)
144 2bov_A RAla, RAS-related prote 96.5 0.071 2.4E-06 42.4 13.6 88 160-259 62-154 (206)
145 2ywe_A GTP-binding protein LEP 96.5 0.0089 3.1E-07 56.7 9.2 65 160-228 73-137 (600)
146 3k53_A Ferrous iron transport 96.5 0.016 5.5E-07 49.1 10.1 89 160-260 50-144 (271)
147 2bcg_Y Protein YP2, GTP-bindin 96.5 0.015 5E-07 46.8 9.4 89 160-259 57-148 (206)
148 3lxx_A GTPase IMAP family memb 96.5 0.017 5.9E-07 47.8 10.0 97 160-259 78-186 (239)
149 2dy1_A Elongation factor G; tr 96.5 0.0048 1.6E-07 59.5 7.3 81 160-255 74-154 (665)
150 4g1u_C Hemin import ATP-bindin 96.5 0.0015 5.2E-08 55.6 3.5 40 49-90 38-77 (266)
151 2yz2_A Putative ABC transporte 96.5 0.00051 1.8E-08 58.5 0.3 39 48-88 33-71 (266)
152 2a9k_A RAS-related protein RAL 96.5 0.092 3.2E-06 40.8 13.7 88 160-259 66-158 (187)
153 1kht_A Adenylate kinase; phosp 96.4 0.0023 7.9E-08 50.9 4.0 37 49-87 4-40 (192)
154 2nzj_A GTP-binding protein REM 96.4 0.058 2E-06 41.6 12.2 67 160-228 52-123 (175)
155 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0027 9.3E-08 53.7 4.6 37 50-88 6-42 (260)
156 1kao_A RAP2A; GTP-binding prot 96.4 0.12 4.3E-06 39.1 14.0 88 160-259 51-143 (167)
157 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.033 1.1E-06 48.8 11.7 35 50-86 173-207 (330)
158 3i8s_A Ferrous iron transport 96.4 0.018 6.2E-07 49.0 9.7 89 160-260 50-147 (274)
159 1z08_A RAS-related protein RAB 96.4 0.04 1.4E-06 42.3 10.9 89 160-259 55-146 (170)
160 2o52_A RAS-related protein RAB 96.4 0.013 4.3E-07 47.1 8.1 89 160-259 74-165 (200)
161 2orv_A Thymidine kinase; TP4A 96.4 0.012 3.9E-07 48.8 7.8 40 46-87 17-56 (234)
162 1a7j_A Phosphoribulokinase; tr 96.3 0.0018 6.2E-08 55.8 3.1 39 50-90 7-45 (290)
163 2ixe_A Antigen peptide transpo 96.3 0.0018 6.1E-08 55.3 3.0 40 47-88 44-83 (271)
164 2il1_A RAB12; G-protein, GDP, 96.3 0.019 6.6E-07 45.6 9.0 66 160-228 75-143 (192)
165 2nq2_C Hypothetical ABC transp 96.3 0.003 1E-07 53.3 4.3 31 50-82 33-63 (253)
166 3cbq_A GTP-binding protein REM 96.3 0.038 1.3E-06 44.1 10.7 89 160-259 72-165 (195)
167 3avx_A Elongation factor TS, e 96.3 0.012 4.1E-07 59.6 9.0 66 160-228 359-424 (1289)
168 1nks_A Adenylate kinase; therm 96.3 0.004 1.4E-07 49.5 4.8 36 50-87 3-38 (194)
169 3cph_A RAS-related protein SEC 96.3 0.017 5.8E-07 46.5 8.6 88 160-259 69-159 (213)
170 1g29_1 MALK, maltose transport 96.3 0.00062 2.1E-08 60.9 -0.2 37 49-87 30-66 (372)
171 1x3s_A RAS-related protein RAB 96.3 0.042 1.4E-06 43.3 10.8 88 160-259 64-155 (195)
172 3bh0_A DNAB-like replicative h 96.3 0.0051 1.7E-07 53.6 5.6 54 34-89 53-107 (315)
173 3q85_A GTP-binding protein REM 96.3 0.024 8.1E-07 43.7 9.0 89 160-259 51-144 (169)
174 3t5g_A GTP-binding protein RHE 96.3 0.038 1.3E-06 43.1 10.3 88 160-259 54-146 (181)
175 2gf9_A RAS-related protein RAB 96.3 0.016 5.6E-07 45.8 8.2 89 160-259 71-162 (189)
176 2bme_A RAB4A, RAS-related prot 96.2 0.042 1.4E-06 43.0 10.5 89 160-259 59-150 (186)
177 2cvh_A DNA repair and recombin 96.2 0.0055 1.9E-07 49.9 5.4 49 36-89 6-56 (220)
178 1wb1_A Translation elongation 96.2 0.0055 1.9E-07 56.7 5.8 65 160-228 73-137 (482)
179 3d31_A Sulfate/molybdate ABC t 96.2 0.0021 7.2E-08 56.9 2.8 38 49-88 27-64 (348)
180 1uj2_A Uridine-cytidine kinase 96.2 0.004 1.4E-07 52.3 4.5 39 49-89 23-66 (252)
181 2h17_A ADP-ribosylation factor 96.2 0.01 3.5E-07 46.7 6.7 66 160-228 65-134 (181)
182 1mv5_A LMRA, multidrug resista 96.2 0.0046 1.6E-07 51.8 4.8 40 47-88 27-66 (243)
183 1oxx_K GLCV, glucose, ABC tran 96.2 0.00047 1.6E-08 61.2 -1.5 37 49-87 32-68 (353)
184 3cb4_D GTP-binding protein LEP 96.2 0.016 5.5E-07 55.0 8.8 65 160-228 71-135 (599)
185 2qu8_A Putative nucleolar GTP- 96.1 0.03 1E-06 45.9 9.5 66 160-228 76-154 (228)
186 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.082 2.8E-06 40.8 11.7 65 160-228 56-128 (177)
187 3cmw_A Protein RECA, recombina 96.1 0.016 5.4E-07 61.0 9.2 55 34-90 715-772 (1706)
188 2pez_A Bifunctional 3'-phospho 96.1 0.005 1.7E-07 48.6 4.4 37 50-88 7-43 (179)
189 1sgw_A Putative ABC transporte 96.1 0.0016 5.4E-08 53.6 1.5 36 50-87 37-72 (214)
190 2y8e_A RAB-protein 6, GH09086P 96.1 0.038 1.3E-06 42.8 9.6 89 160-259 63-154 (179)
191 1tf7_A KAIC; homohexamer, hexa 96.1 0.0099 3.4E-07 55.6 7.0 51 36-88 267-319 (525)
192 2p5s_A RAS and EF-hand domain 96.1 0.021 7.1E-07 45.7 8.0 65 160-228 77-145 (199)
193 2lkc_A Translation initiation 96.1 0.0077 2.6E-07 47.0 5.3 65 160-228 55-119 (178)
194 2qi9_C Vitamin B12 import ATP- 96.0 0.0013 4.3E-08 55.5 0.5 36 49-87 27-62 (249)
195 1nrj_B SR-beta, signal recogni 96.0 0.015 5.1E-07 47.2 7.1 67 160-228 55-132 (218)
196 1cr0_A DNA primase/helicase; R 96.0 0.007 2.4E-07 52.0 5.2 41 46-88 33-74 (296)
197 2a5j_A RAS-related protein RAB 96.0 0.033 1.1E-06 44.1 9.0 89 160-259 70-161 (191)
198 4a1f_A DNAB helicase, replicat 96.0 0.0063 2.2E-07 53.6 4.9 55 33-89 30-85 (338)
199 1qhx_A CPT, protein (chloramph 96.0 0.004 1.4E-07 49.0 3.2 37 46-87 1-37 (178)
200 3c8u_A Fructokinase; YP_612366 96.0 0.011 3.7E-07 48.0 5.9 40 47-88 21-60 (208)
201 1zj6_A ADP-ribosylation factor 96.0 0.038 1.3E-06 43.5 9.0 66 160-228 60-129 (187)
202 3bos_A Putative DNA replicatio 96.0 0.0094 3.2E-07 48.9 5.6 50 37-88 41-90 (242)
203 2w58_A DNAI, primosome compone 95.9 0.0082 2.8E-07 48.3 5.0 36 49-86 55-90 (202)
204 1r5b_A Eukaryotic peptide chai 95.9 0.018 6.1E-07 53.0 7.8 66 160-228 121-193 (467)
205 1c1y_A RAS-related protein RAP 95.9 0.24 8.2E-06 37.6 13.3 65 160-228 51-120 (167)
206 1ky3_A GTP-binding protein YPT 95.9 0.14 4.8E-06 39.6 12.1 65 160-228 58-130 (182)
207 3vqt_A RF-3, peptide chain rel 95.9 0.011 3.8E-07 55.6 6.4 86 160-259 100-185 (548)
208 3e2i_A Thymidine kinase; Zn-bi 95.9 0.029 9.8E-07 45.9 8.0 38 47-86 27-64 (219)
209 3mca_A HBS1, elongation factor 95.9 0.00083 2.8E-08 63.8 -1.3 66 160-228 255-327 (592)
210 3cmu_A Protein RECA, recombina 95.9 0.026 8.9E-07 60.3 9.6 56 33-90 365-423 (2050)
211 3bgw_A DNAB-like replicative h 95.9 0.0072 2.5E-07 55.3 4.9 56 33-90 181-237 (444)
212 2atv_A RERG, RAS-like estrogen 95.9 0.064 2.2E-06 42.6 10.1 87 160-259 76-167 (196)
213 2j69_A Bacterial dynamin-like 95.9 0.021 7.2E-07 55.2 8.3 66 160-228 174-242 (695)
214 1jbk_A CLPB protein; beta barr 95.9 0.011 3.7E-07 46.4 5.3 39 35-73 30-68 (195)
215 3kkq_A RAS-related protein M-R 95.9 0.089 3E-06 41.0 10.7 88 160-259 66-158 (183)
216 3cpj_B GTP-binding protein YPT 95.8 0.059 2E-06 43.9 9.9 89 160-259 62-153 (223)
217 1w4r_A Thymidine kinase; type 95.8 0.033 1.1E-06 44.8 8.0 46 41-88 13-58 (195)
218 1upt_A ARL1, ADP-ribosylation 95.8 0.039 1.3E-06 42.4 8.3 66 160-228 51-120 (171)
219 3cmw_A Protein RECA, recombina 95.8 0.025 8.7E-07 59.5 9.0 56 33-90 365-423 (1706)
220 1m7g_A Adenylylsulfate kinase; 95.8 0.0088 3E-07 48.7 4.6 50 37-87 14-63 (211)
221 2plr_A DTMP kinase, probable t 95.8 0.013 4.4E-07 47.2 5.6 36 48-86 4-39 (213)
222 3b5x_A Lipid A export ATP-bind 95.8 0.013 4.5E-07 55.5 6.4 40 47-89 369-408 (582)
223 3asz_A Uridine kinase; cytidin 95.8 0.0099 3.4E-07 48.2 4.8 37 47-89 6-42 (211)
224 2p65_A Hypothetical protein PF 95.7 0.014 4.6E-07 45.8 5.4 39 35-73 30-68 (187)
225 3ihw_A Centg3; RAS, centaurin, 95.7 0.16 5.5E-06 39.9 11.7 85 160-259 67-157 (184)
226 3ec2_A DNA replication protein 95.7 0.0077 2.6E-07 47.6 3.8 38 48-86 38-75 (180)
227 3a1s_A Iron(II) transport prot 95.7 0.041 1.4E-06 46.3 8.6 89 160-260 52-145 (258)
228 4dcu_A GTP-binding protein ENG 95.7 0.0069 2.4E-07 55.6 4.0 66 160-228 71-143 (456)
229 1nn5_A Similar to deoxythymidy 95.7 0.011 3.8E-07 47.8 4.8 35 49-85 10-44 (215)
230 2gco_A H9, RHO-related GTP-bin 95.7 0.04 1.4E-06 44.1 8.1 65 160-228 73-141 (201)
231 2pjz_A Hypothetical protein ST 95.7 0.0057 1.9E-07 51.9 3.0 33 50-85 32-64 (263)
232 3tqc_A Pantothenate kinase; bi 95.6 0.015 5.3E-07 50.7 5.8 43 47-89 91-133 (321)
233 2gf0_A GTP-binding protein DI- 95.6 0.13 4.6E-06 40.5 11.1 87 160-259 56-148 (199)
234 1m2o_B GTP-binding protein SAR 95.6 0.054 1.9E-06 42.9 8.6 65 160-228 67-136 (190)
235 4dsu_A GTPase KRAS, isoform 2B 95.6 0.19 6.4E-06 39.1 11.7 87 160-259 52-143 (189)
236 1v5w_A DMC1, meiotic recombina 95.6 0.023 7.8E-07 50.1 6.6 55 33-89 105-167 (343)
237 1q57_A DNA primase/helicase; d 95.5 0.014 4.8E-07 54.2 5.5 53 35-89 228-282 (503)
238 1qf9_A UMP/CMP kinase, protein 95.5 0.011 3.7E-07 46.9 4.1 36 45-87 3-38 (194)
239 1e6c_A Shikimate kinase; phosp 95.5 0.0084 2.9E-07 46.8 3.3 34 46-87 1-34 (173)
240 3dpu_A RAB family protein; roc 95.5 0.11 3.8E-06 48.5 11.5 86 160-259 98-185 (535)
241 3cmu_A Protein RECA, recombina 95.5 0.047 1.6E-06 58.3 9.7 56 33-90 714-772 (2050)
242 2z43_A DNA repair and recombin 95.5 0.014 4.7E-07 51.0 4.9 54 34-89 91-152 (324)
243 2zts_A Putative uncharacterize 95.5 0.012 4E-07 48.8 4.3 55 34-89 14-70 (251)
244 2gks_A Bifunctional SAT/APS ki 95.5 0.014 4.9E-07 54.7 5.3 38 49-88 373-410 (546)
245 2r6a_A DNAB helicase, replicat 95.5 0.014 4.9E-07 53.4 5.2 54 34-89 188-243 (454)
246 3d3q_A TRNA delta(2)-isopenten 95.5 0.015 5.1E-07 51.1 5.0 36 47-89 6-41 (340)
247 1fzq_A ADP-ribosylation factor 95.4 0.13 4.3E-06 40.3 10.2 65 160-228 60-129 (181)
248 4dcu_A GTP-binding protein ENG 95.4 0.03 1E-06 51.3 7.2 66 160-228 243-318 (456)
249 1nlf_A Regulatory protein REPA 95.4 0.021 7.3E-07 48.5 5.6 39 48-88 30-78 (279)
250 1via_A Shikimate kinase; struc 95.3 0.0096 3.3E-07 46.8 3.1 34 47-88 4-37 (175)
251 2pbr_A DTMP kinase, thymidylat 95.3 0.019 6.6E-07 45.5 4.8 34 50-85 2-35 (195)
252 4edh_A DTMP kinase, thymidylat 95.3 0.027 9.1E-07 46.1 5.7 38 46-85 4-41 (213)
253 1mky_A Probable GTP-binding pr 95.3 0.058 2E-06 49.1 8.5 65 160-227 49-121 (439)
254 3t34_A Dynamin-related protein 95.2 0.0093 3.2E-07 52.9 3.0 66 160-228 136-215 (360)
255 1vco_A CTP synthetase; tetrame 95.2 0.024 8.1E-07 53.0 5.7 43 46-90 11-54 (550)
256 3t61_A Gluconokinase; PSI-biol 95.2 0.012 4.3E-07 47.3 3.5 38 43-88 14-51 (202)
257 2g3y_A GTP-binding protein GEM 95.2 0.21 7.2E-06 40.5 10.9 66 160-228 87-157 (211)
258 3gj0_A GTP-binding nuclear pro 95.2 0.056 1.9E-06 43.9 7.5 65 160-228 64-131 (221)
259 2z0h_A DTMP kinase, thymidylat 95.2 0.021 7.3E-07 45.4 4.8 35 50-86 2-36 (197)
260 1n0w_A DNA repair protein RAD5 95.1 0.022 7.4E-07 47.0 4.9 55 34-88 8-68 (243)
261 3trf_A Shikimate kinase, SK; a 95.1 0.016 5.4E-07 45.8 3.8 34 47-88 5-38 (185)
262 1x6v_B Bifunctional 3'-phospho 95.1 0.023 7.9E-07 54.1 5.5 53 34-88 34-90 (630)
263 3lvq_E ARF-GAP with SH3 domain 95.1 0.03 1E-06 51.8 6.2 66 160-228 366-435 (497)
264 2zu0_C Probable ATP-dependent 95.1 0.01 3.5E-07 50.4 2.7 37 49-87 47-85 (267)
265 2hjg_A GTP-binding protein ENG 95.1 0.0091 3.1E-07 54.4 2.6 66 160-228 51-123 (436)
266 1vg8_A RAS-related protein RAB 95.1 0.044 1.5E-06 43.7 6.4 65 160-228 57-129 (207)
267 1m8p_A Sulfate adenylyltransfe 95.0 0.018 6.1E-07 54.4 4.5 52 35-88 381-435 (573)
268 1gvn_B Zeta; postsegregational 95.0 0.018 6.2E-07 49.4 4.1 39 45-88 30-68 (287)
269 1n0u_A EF-2, elongation factor 95.0 0.042 1.4E-06 54.3 7.1 66 159-228 97-162 (842)
270 3ney_A 55 kDa erythrocyte memb 95.0 0.015 5E-07 47.1 3.2 34 40-73 11-44 (197)
271 1f6b_A SAR1; gtpases, N-termin 95.0 0.07 2.4E-06 42.6 7.3 65 160-228 69-138 (198)
272 1lnz_A SPO0B-associated GTP-bi 94.9 0.036 1.2E-06 48.8 5.9 64 160-228 206-286 (342)
273 1tev_A UMP-CMP kinase; ploop, 94.9 0.02 6.8E-07 45.4 3.9 27 47-73 2-28 (196)
274 1s1m_A CTP synthase; CTP synth 94.9 0.033 1.1E-06 51.9 5.8 41 47-89 3-44 (545)
275 1sq5_A Pantothenate kinase; P- 94.9 0.034 1.2E-06 48.2 5.5 41 49-89 81-121 (308)
276 2wwf_A Thymidilate kinase, put 94.8 0.029 1E-06 45.2 4.8 35 49-85 11-45 (212)
277 2p5t_B PEZT; postsegregational 94.8 0.021 7.3E-07 47.9 4.0 38 46-88 30-67 (253)
278 4a74_A DNA repair and recombin 94.8 0.047 1.6E-06 44.5 6.1 53 34-88 9-69 (231)
279 1zun_B Sulfate adenylate trans 94.8 0.048 1.7E-06 49.6 6.6 66 160-228 104-169 (434)
280 2axn_A 6-phosphofructo-2-kinas 94.8 0.022 7.6E-07 53.1 4.4 40 47-88 34-73 (520)
281 2fv8_A H6, RHO-related GTP-bin 94.8 0.16 5.6E-06 40.6 9.2 65 160-228 73-141 (207)
282 1kag_A SKI, shikimate kinase I 94.8 0.015 5.2E-07 45.3 2.8 31 50-87 6-36 (173)
283 1gtv_A TMK, thymidylate kinase 94.7 0.012 3.9E-07 47.7 2.0 35 50-86 2-36 (214)
284 4f4c_A Multidrug resistance pr 94.7 0.012 4.2E-07 61.0 2.5 45 47-94 1105-1149(1321)
285 1ly1_A Polynucleotide kinase; 94.7 0.023 7.9E-07 44.4 3.6 34 48-87 2-35 (181)
286 2xtp_A GTPase IMAP family memb 94.7 0.11 3.9E-06 43.3 8.1 21 48-69 23-43 (260)
287 1knq_A Gluconate kinase; ALFA/ 94.6 0.035 1.2E-06 43.4 4.6 34 48-88 8-41 (175)
288 3syl_A Protein CBBX; photosynt 94.6 0.17 5.9E-06 43.2 9.4 34 50-85 69-106 (309)
289 1g8f_A Sulfate adenylyltransfe 94.6 0.044 1.5E-06 50.9 5.8 38 49-88 396-435 (511)
290 2yl4_A ATP-binding cassette SU 94.6 0.045 1.5E-06 52.0 6.0 40 47-89 370-409 (595)
291 3cr8_A Sulfate adenylyltranfer 94.5 0.039 1.3E-06 51.8 5.4 39 48-88 369-408 (552)
292 2iyv_A Shikimate kinase, SK; t 94.5 0.013 4.6E-07 46.3 1.9 31 51-88 5-35 (184)
293 1odf_A YGR205W, hypothetical 3 94.5 0.029 9.8E-07 48.3 4.0 40 47-88 30-72 (290)
294 4eun_A Thermoresistant glucoki 94.5 0.026 8.8E-07 45.4 3.5 34 48-88 29-62 (200)
295 3ozx_A RNAse L inhibitor; ATP 94.5 0.046 1.6E-06 51.2 5.7 32 50-83 296-327 (538)
296 1y63_A LMAJ004144AAA protein; 94.4 0.029 9.8E-07 44.5 3.7 33 49-87 11-43 (184)
297 3crm_A TRNA delta(2)-isopenten 94.4 0.037 1.3E-06 48.2 4.6 35 47-88 4-38 (323)
298 3vaa_A Shikimate kinase, SK; s 94.4 0.031 1.1E-06 44.9 3.9 39 33-73 12-50 (199)
299 2hjg_A GTP-binding protein ENG 94.4 0.018 6.2E-07 52.4 2.7 43 185-228 256-298 (436)
300 1sxj_E Activator 1 40 kDa subu 94.4 0.1 3.5E-06 45.6 7.5 23 51-73 39-61 (354)
301 3ld9_A DTMP kinase, thymidylat 94.4 0.025 8.7E-07 46.6 3.3 44 45-90 18-62 (223)
302 2rhm_A Putative kinase; P-loop 94.3 0.035 1.2E-06 43.9 4.1 26 48-73 5-30 (193)
303 3exa_A TRNA delta(2)-isopenten 94.3 0.038 1.3E-06 47.9 4.4 36 46-88 1-36 (322)
304 2jeo_A Uridine-cytidine kinase 94.3 0.046 1.6E-06 45.5 4.9 40 47-88 24-68 (245)
305 3lv8_A DTMP kinase, thymidylat 94.3 0.043 1.5E-06 45.7 4.6 36 47-84 26-62 (236)
306 3v9p_A DTMP kinase, thymidylat 94.2 0.029 9.8E-07 46.4 3.4 48 36-85 12-64 (227)
307 4tmk_A Protein (thymidylate ki 94.1 0.049 1.7E-06 44.5 4.6 35 48-84 3-38 (213)
308 3bk7_A ABC transporter ATP-bin 94.1 0.038 1.3E-06 52.5 4.4 30 50-81 384-413 (607)
309 4ag6_A VIRB4 ATPase, type IV s 94.1 0.049 1.7E-06 48.7 4.9 38 50-89 37-74 (392)
310 2ze6_A Isopentenyl transferase 94.1 0.039 1.3E-06 46.3 4.0 32 50-88 3-34 (253)
311 3kb2_A SPBC2 prophage-derived 94.1 0.038 1.3E-06 42.8 3.6 32 50-88 3-34 (173)
312 2i1q_A DNA repair and recombin 94.0 0.052 1.8E-06 47.2 4.8 56 34-89 82-153 (322)
313 2qt1_A Nicotinamide riboside k 94.0 0.037 1.3E-06 44.6 3.6 34 49-88 22-55 (207)
314 2atx_A Small GTP binding prote 94.0 0.24 8.3E-06 38.9 8.4 65 160-228 66-134 (194)
315 1f60_A Elongation factor EEF1A 94.0 0.16 5.4E-06 46.5 8.2 66 160-228 85-157 (458)
316 1pzn_A RAD51, DNA repair and r 94.0 0.061 2.1E-06 47.5 5.2 53 34-88 115-175 (349)
317 2fh5_B SR-beta, signal recogni 93.9 0.56 1.9E-05 37.4 10.6 66 160-228 54-127 (214)
318 1cke_A CK, MSSA, protein (cyti 93.9 0.046 1.6E-06 44.6 3.9 25 48-73 6-30 (227)
319 4e22_A Cytidylate kinase; P-lo 93.9 0.039 1.3E-06 46.2 3.6 26 47-73 27-52 (252)
320 1l8q_A Chromosomal replication 93.9 0.051 1.7E-06 47.1 4.4 36 50-87 39-74 (324)
321 4eaq_A DTMP kinase, thymidylat 93.8 0.086 2.9E-06 43.5 5.6 35 48-85 26-60 (229)
322 1kgd_A CASK, peripheral plasma 93.8 0.036 1.2E-06 43.7 3.1 26 48-73 5-30 (180)
323 2chg_A Replication factor C sm 93.8 0.033 1.1E-06 44.7 3.0 48 35-84 25-72 (226)
324 1zo1_I IF2, translation initia 93.8 0.026 8.8E-07 52.4 2.5 65 160-228 51-115 (501)
325 3foz_A TRNA delta(2)-isopenten 93.8 0.064 2.2E-06 46.4 4.8 35 47-88 9-43 (316)
326 3iij_A Coilin-interacting nucl 93.8 0.037 1.3E-06 43.5 3.1 25 49-73 12-36 (180)
327 2qtf_A Protein HFLX, GTP-bindi 93.8 0.18 6.3E-06 44.6 7.9 66 160-228 226-304 (364)
328 2j1l_A RHO-related GTP-binding 93.8 0.26 9E-06 39.6 8.3 65 160-228 82-150 (214)
329 3r7w_A Gtpase1, GTP-binding pr 93.8 0.14 4.8E-06 44.1 7.0 66 160-228 52-127 (307)
330 3aez_A Pantothenate kinase; tr 93.7 0.092 3.1E-06 45.6 5.8 40 47-88 89-130 (312)
331 2elf_A Protein translation elo 93.7 0.13 4.3E-06 45.8 6.8 64 160-227 60-124 (370)
332 3lda_A DNA repair protein RAD5 93.7 0.066 2.3E-06 48.2 4.9 55 33-89 161-223 (400)
333 3cm0_A Adenylate kinase; ATP-b 93.7 0.057 1.9E-06 42.5 4.0 25 49-73 5-29 (186)
334 3lw7_A Adenylate kinase relate 93.7 0.03 1E-06 43.3 2.4 19 50-68 3-21 (179)
335 1jjv_A Dephospho-COA kinase; P 93.6 0.045 1.5E-06 44.0 3.5 33 47-88 2-34 (206)
336 4fcw_A Chaperone protein CLPB; 93.5 0.088 3E-06 45.1 5.3 39 49-89 48-86 (311)
337 1zp6_A Hypothetical protein AT 93.5 0.049 1.7E-06 43.1 3.4 35 48-87 9-43 (191)
338 2bdt_A BH3686; alpha-beta prot 93.5 0.056 1.9E-06 42.8 3.8 23 48-70 2-24 (189)
339 2j41_A Guanylate kinase; GMP, 93.5 0.035 1.2E-06 44.5 2.6 26 48-73 6-31 (207)
340 3hjn_A DTMP kinase, thymidylat 93.5 0.082 2.8E-06 42.5 4.7 34 51-86 3-36 (197)
341 2qby_B CDC6 homolog 3, cell di 93.4 0.07 2.4E-06 47.1 4.6 38 48-87 45-90 (384)
342 2if2_A Dephospho-COA kinase; a 93.4 0.047 1.6E-06 43.8 3.2 32 48-88 2-33 (204)
343 2bbw_A Adenylate kinase 4, AK4 93.4 0.059 2E-06 44.8 3.9 24 50-73 29-52 (246)
344 2grj_A Dephospho-COA kinase; T 93.4 0.056 1.9E-06 43.4 3.6 34 49-89 13-46 (192)
345 1g7s_A Translation initiation 93.4 0.19 6.5E-06 47.6 7.8 65 160-228 70-134 (594)
346 4hlc_A DTMP kinase, thymidylat 93.4 0.11 3.6E-06 42.2 5.2 33 50-85 4-36 (205)
347 1fnn_A CDC6P, cell division co 93.4 0.14 4.7E-06 45.2 6.4 37 50-88 46-83 (389)
348 1aky_A Adenylate kinase; ATP:A 93.4 0.062 2.1E-06 43.7 3.9 24 50-73 6-29 (220)
349 1p9r_A General secretion pathw 93.3 0.16 5.4E-06 45.9 6.8 41 46-88 165-205 (418)
350 1qvr_A CLPB protein; coiled co 93.3 0.27 9.2E-06 48.7 9.0 38 49-88 589-626 (854)
351 3szr_A Interferon-induced GTP- 93.3 0.033 1.1E-06 53.0 2.4 24 49-73 47-70 (608)
352 3n70_A Transport activator; si 93.3 0.057 1.9E-06 41.0 3.3 34 51-87 27-60 (145)
353 3qf4_A ABC transporter, ATP-bi 93.3 0.03 1E-06 53.0 2.0 40 47-89 369-408 (587)
354 2e87_A Hypothetical protein PH 93.2 0.27 9.4E-06 43.3 8.1 67 160-228 214-292 (357)
355 1sxj_B Activator 1 37 kDa subu 93.2 0.093 3.2E-06 45.0 5.0 38 35-73 29-67 (323)
356 2vli_A Antibiotic resistance p 93.2 0.038 1.3E-06 43.4 2.3 24 50-73 7-30 (183)
357 1yqt_A RNAse L inhibitor; ATP- 93.2 0.074 2.5E-06 49.8 4.5 30 50-81 314-343 (538)
358 2qby_A CDC6 homolog 1, cell di 93.1 0.067 2.3E-06 47.1 4.0 38 48-87 45-85 (386)
359 1ltq_A Polynucleotide kinase; 93.1 0.066 2.3E-06 45.8 3.8 34 48-87 2-35 (301)
360 1tf7_A KAIC; homohexamer, hexa 93.1 0.54 1.9E-05 43.7 10.3 38 48-88 39-78 (525)
361 2c95_A Adenylate kinase 1; tra 93.0 0.067 2.3E-06 42.4 3.5 24 50-73 11-34 (196)
362 2bwj_A Adenylate kinase 5; pho 93.0 0.056 1.9E-06 43.0 3.1 32 49-87 13-44 (199)
363 2cdn_A Adenylate kinase; phosp 92.7 0.084 2.9E-06 42.2 3.7 25 49-73 21-45 (201)
364 2dby_A GTP-binding protein; GD 92.7 1.7 5.8E-05 38.5 12.5 21 50-71 4-24 (368)
365 3ake_A Cytidylate kinase; CMP 92.7 0.087 3E-06 42.1 3.8 31 50-87 4-34 (208)
366 3tr0_A Guanylate kinase, GMP k 92.6 0.072 2.5E-06 42.6 3.2 25 49-73 8-32 (205)
367 3geh_A MNME, tRNA modification 92.6 0.29 9.9E-06 44.8 7.5 64 160-228 272-342 (462)
368 3a8t_A Adenylate isopentenyltr 92.6 0.082 2.8E-06 46.3 3.6 34 49-89 41-74 (339)
369 2v54_A DTMP kinase, thymidylat 92.5 0.077 2.6E-06 42.4 3.2 33 50-86 6-38 (204)
370 2jaq_A Deoxyguanosine kinase; 92.5 0.088 3E-06 41.9 3.6 23 51-73 3-25 (205)
371 3gee_A MNME, tRNA modification 92.5 0.095 3.2E-06 48.3 4.2 67 160-228 281-355 (476)
372 1a5t_A Delta prime, HOLB; zinc 92.4 1.3 4.4E-05 38.4 11.3 24 50-73 26-49 (334)
373 3tau_A Guanylate kinase, GMP k 92.4 0.064 2.2E-06 43.4 2.6 26 48-73 8-33 (208)
374 2qor_A Guanylate kinase; phosp 92.4 0.06 2.1E-06 43.3 2.4 24 50-73 14-37 (204)
375 1zuh_A Shikimate kinase; alpha 92.3 0.1 3.5E-06 40.4 3.6 34 47-88 7-40 (168)
376 2a5y_B CED-4; apoptosis; HET: 92.2 0.12 4E-06 48.5 4.5 50 36-87 137-193 (549)
377 2pt5_A Shikimate kinase, SK; a 92.1 0.11 3.7E-06 40.1 3.6 23 51-73 3-25 (168)
378 1vht_A Dephospho-COA kinase; s 92.1 0.094 3.2E-06 42.5 3.3 31 49-87 5-35 (218)
379 4a9a_A Ribosome-interacting GT 92.1 0.41 1.4E-05 42.6 7.6 66 160-228 119-194 (376)
380 3e1s_A Exodeoxyribonuclease V, 92.1 0.13 4.5E-06 48.5 4.7 35 48-84 204-238 (574)
381 2bjv_A PSP operon transcriptio 92.1 0.12 4.2E-06 43.2 4.1 37 50-88 31-67 (265)
382 2gno_A DNA polymerase III, gam 92.1 0.94 3.2E-05 38.9 9.8 38 36-73 6-43 (305)
383 2c5m_A CTP synthase; cytidine 92.0 0.18 6.2E-06 42.0 4.8 43 46-90 22-65 (294)
384 2qgz_A Helicase loader, putati 92.0 0.13 4.4E-06 44.4 4.3 37 49-86 153-189 (308)
385 2z4s_A Chromosomal replication 92.0 0.099 3.4E-06 47.6 3.6 38 50-87 132-169 (440)
386 3a00_A Guanylate kinase, GMP k 92.0 0.073 2.5E-06 42.2 2.5 24 50-73 3-26 (186)
387 1htw_A HI0065; nucleotide-bind 92.0 0.17 5.9E-06 39.1 4.5 31 46-78 31-61 (158)
388 1ye8_A Protein THEP1, hypothet 92.0 0.12 4E-06 40.9 3.6 23 51-73 3-25 (178)
389 2d2e_A SUFC protein; ABC-ATPas 91.9 0.028 9.5E-07 47.2 -0.2 37 50-88 31-69 (250)
390 1ukz_A Uridylate kinase; trans 91.9 0.11 3.7E-06 41.6 3.4 31 50-87 17-47 (203)
391 2hup_A RAS-related protein RAB 91.8 1.1 3.8E-05 35.4 9.5 89 160-259 78-170 (201)
392 3r20_A Cytidylate kinase; stru 91.8 0.11 3.8E-06 43.0 3.4 26 48-73 9-34 (233)
393 2h92_A Cytidylate kinase; ross 91.8 0.078 2.7E-06 43.0 2.4 33 49-88 4-36 (219)
394 1uf9_A TT1252 protein; P-loop, 91.7 0.13 4.4E-06 41.0 3.7 32 49-88 9-40 (203)
395 2yc2_C IFT27, small RAB-relate 91.7 0.61 2.1E-05 36.8 7.7 89 160-259 73-168 (208)
396 2v1u_A Cell division control p 91.6 0.088 3E-06 46.3 2.8 40 47-88 43-88 (387)
397 1s0u_A EIF-2-gamma, translatio 91.6 0.25 8.7E-06 44.3 5.9 66 160-228 81-147 (408)
398 1s96_A Guanylate kinase, GMP k 91.6 0.11 3.6E-06 42.7 3.0 26 48-73 16-41 (219)
399 1lvg_A Guanylate kinase, GMP k 91.5 0.1 3.5E-06 41.9 2.8 24 50-73 6-29 (198)
400 1nij_A Hypothetical protein YJ 91.4 0.14 4.9E-06 44.3 3.9 36 49-88 5-40 (318)
401 1zd8_A GTP:AMP phosphotransfer 91.4 0.11 3.7E-06 42.5 2.9 24 50-73 9-32 (227)
402 2npi_A Protein CLP1; CLP1-PCF1 91.4 0.085 2.9E-06 48.4 2.5 39 47-88 138-177 (460)
403 1ak2_A Adenylate kinase isoenz 91.3 0.14 4.9E-06 42.0 3.7 26 47-73 16-41 (233)
404 3pxg_A Negative regulator of g 91.3 0.2 6.7E-06 46.0 4.9 38 36-73 189-226 (468)
405 1jr3_A DNA polymerase III subu 91.3 1.2 3.9E-05 38.9 9.8 24 50-73 40-63 (373)
406 1xzp_A Probable tRNA modificat 91.3 0.43 1.5E-05 43.9 7.1 63 160-228 291-362 (482)
407 3tlx_A Adenylate kinase 2; str 91.2 0.2 7E-06 41.5 4.5 27 47-73 28-54 (243)
408 3upu_A ATP-dependent DNA helic 91.2 0.25 8.4E-06 45.2 5.4 33 50-84 47-80 (459)
409 3fb4_A Adenylate kinase; psych 91.2 0.15 5.3E-06 41.1 3.6 23 51-73 3-25 (216)
410 3be4_A Adenylate kinase; malar 91.2 0.15 5.1E-06 41.4 3.5 25 48-73 6-30 (217)
411 3j16_B RLI1P; ribosome recycli 91.1 0.35 1.2E-05 45.9 6.5 24 50-73 380-403 (608)
412 1bif_A 6-phosphofructo-2-kinas 91.1 0.18 6.2E-06 46.2 4.4 39 47-87 38-76 (469)
413 1znw_A Guanylate kinase, GMP k 91.1 0.13 4.6E-06 41.3 3.2 27 47-73 19-45 (207)
414 1w5s_A Origin recognition comp 91.0 0.19 6.6E-06 44.7 4.4 40 47-88 49-96 (412)
415 1zak_A Adenylate kinase; ATP:A 90.8 0.13 4.5E-06 41.8 2.9 23 51-73 8-30 (222)
416 2r2a_A Uncharacterized protein 90.8 0.23 7.8E-06 40.0 4.3 38 50-87 7-48 (199)
417 2ihy_A ABC transporter, ATP-bi 90.7 0.067 2.3E-06 45.6 1.0 37 50-88 49-85 (279)
418 2vhj_A Ntpase P4, P4; non- hyd 90.7 0.13 4.4E-06 44.8 2.8 34 48-86 123-156 (331)
419 2g6b_A RAS-related protein RAB 90.7 0.71 2.4E-05 35.4 7.0 89 160-259 60-151 (180)
420 2ff7_A Alpha-hemolysin translo 90.6 0.078 2.7E-06 44.3 1.3 39 49-89 36-74 (247)
421 3te6_A Regulatory protein SIR3 90.5 0.28 9.7E-06 42.5 4.9 36 38-73 35-70 (318)
422 3eph_A TRNA isopentenyltransfe 90.5 0.2 6.8E-06 45.0 3.9 34 48-88 2-35 (409)
423 3kta_A Chromosome segregation 90.4 0.18 6.2E-06 39.4 3.2 24 50-73 28-51 (182)
424 1of1_A Thymidine kinase; trans 90.3 0.22 7.6E-06 44.2 4.0 32 49-84 50-81 (376)
425 2fu5_C RAS-related protein RAB 90.3 0.66 2.3E-05 35.8 6.6 89 160-259 57-148 (183)
426 3nh6_A ATP-binding cassette SU 90.3 0.055 1.9E-06 46.8 0.1 41 47-90 80-120 (306)
427 1z6g_A Guanylate kinase; struc 90.3 0.14 4.7E-06 41.8 2.5 24 49-72 24-47 (218)
428 2fna_A Conserved hypothetical 90.2 0.36 1.2E-05 41.7 5.4 45 35-88 21-65 (357)
429 2pze_A Cystic fibrosis transme 90.2 0.088 3E-06 43.4 1.3 34 47-83 34-67 (229)
430 2xb4_A Adenylate kinase; ATP-b 90.2 0.21 7E-06 40.8 3.6 24 50-73 2-25 (223)
431 1b0u_A Histidine permease; ABC 90.2 0.088 3E-06 44.4 1.3 37 50-88 34-70 (262)
432 1z6t_A APAF-1, apoptotic prote 90.2 0.25 8.5E-06 46.5 4.6 54 34-88 131-189 (591)
433 3dl0_A Adenylate kinase; phosp 90.2 0.18 6.2E-06 40.7 3.2 23 51-73 3-25 (216)
434 1c9k_A COBU, adenosylcobinamid 90.2 0.26 9E-06 39.0 4.0 32 51-88 2-33 (180)
435 2gza_A Type IV secretion syste 90.1 0.14 4.8E-06 45.3 2.6 36 48-85 175-210 (361)
436 2f7s_A C25KG, RAS-related prot 90.0 0.66 2.3E-05 37.1 6.5 89 160-259 84-176 (217)
437 1p5z_B DCK, deoxycytidine kina 90.0 0.073 2.5E-06 44.7 0.7 24 50-73 26-49 (263)
438 2f6r_A COA synthase, bifunctio 90.0 0.22 7.5E-06 42.3 3.7 32 49-88 76-107 (281)
439 1e4v_A Adenylate kinase; trans 89.9 0.23 7.9E-06 40.1 3.6 22 52-73 4-25 (214)
440 2cbz_A Multidrug resistance-as 89.8 0.07 2.4E-06 44.3 0.4 33 49-83 32-64 (237)
441 3fdi_A Uncharacterized protein 89.8 0.2 6.7E-06 40.4 3.1 28 46-73 4-31 (201)
442 3orf_A Dihydropteridine reduct 89.5 0.23 7.8E-06 41.3 3.4 43 40-89 15-57 (251)
443 4b3f_X DNA-binding protein smu 89.5 0.31 1.1E-05 46.6 4.7 36 48-85 205-240 (646)
444 3hdt_A Putative kinase; struct 89.4 0.31 1.1E-05 40.0 4.0 36 46-88 12-47 (223)
445 2i3b_A HCR-ntpase, human cance 89.4 0.23 7.9E-06 39.6 3.1 25 52-78 5-29 (189)
446 1njg_A DNA polymerase III subu 89.4 0.27 9.3E-06 39.6 3.7 38 36-73 32-70 (250)
447 3izq_1 HBS1P, elongation facto 89.3 0.5 1.7E-05 44.9 5.9 66 160-228 245-317 (611)
448 3lnc_A Guanylate kinase, GMP k 89.3 0.15 5.1E-06 41.8 2.0 25 49-73 28-53 (231)
449 1kk1_A EIF2gamma; initiation o 89.2 0.31 1.1E-05 43.8 4.2 66 160-228 83-149 (410)
450 1ojl_A Transcriptional regulat 89.1 0.23 7.9E-06 42.7 3.2 37 50-88 27-63 (304)
451 3nwj_A ATSK2; P loop, shikimat 89.1 0.19 6.4E-06 42.1 2.5 32 49-87 49-80 (250)
452 3nva_A CTP synthase; rossman f 89.1 0.46 1.6E-05 43.9 5.2 42 47-90 3-45 (535)
453 2erx_A GTP-binding protein DI- 89.0 1.5 5E-05 33.1 7.5 65 160-228 51-121 (172)
454 1sxj_C Activator 1 40 kDa subu 89.0 0.2 6.9E-06 43.6 2.8 36 51-88 49-84 (340)
455 1ex7_A Guanylate kinase; subst 89.0 0.25 8.5E-06 39.4 3.0 23 51-73 4-26 (186)
456 3umf_A Adenylate kinase; rossm 88.9 0.36 1.2E-05 39.4 4.0 26 47-73 29-54 (217)
457 2wji_A Ferrous iron transport 88.9 0.34 1.2E-05 37.1 3.7 66 160-228 50-120 (165)
458 3t15_A Ribulose bisphosphate c 88.8 0.29 1E-05 41.8 3.6 34 48-86 36-69 (293)
459 4gp7_A Metallophosphoesterase; 88.7 0.45 1.5E-05 37.0 4.3 20 48-67 9-28 (171)
460 3h1t_A Type I site-specific re 88.7 1.6 5.4E-05 41.0 8.9 36 48-84 199-241 (590)
461 3do6_A Formate--tetrahydrofola 88.7 0.68 2.3E-05 42.1 5.9 52 46-102 42-96 (543)
462 3b85_A Phosphate starvation-in 88.6 0.2 6.7E-06 40.7 2.2 32 47-82 22-53 (208)
463 1qvr_A CLPB protein; coiled co 88.6 0.34 1.2E-05 47.9 4.3 47 39-87 182-235 (854)
464 3h4m_A Proteasome-activating n 88.5 0.38 1.3E-05 40.5 4.1 32 50-86 53-84 (285)
465 3q72_A GTP-binding protein RAD 88.4 2.7 9.3E-05 31.4 8.7 88 160-259 49-141 (166)
466 3c5c_A RAS-like protein 12; GD 88.4 1.4 4.8E-05 34.3 7.2 87 160-259 69-162 (187)
467 1sxj_D Activator 1 41 kDa subu 88.3 0.47 1.6E-05 41.1 4.7 41 33-73 43-83 (353)
468 1f2t_A RAD50 ABC-ATPase; DNA d 88.3 0.38 1.3E-05 36.6 3.6 26 48-73 23-48 (149)
469 1d2n_A N-ethylmaleimide-sensit 88.3 0.58 2E-05 39.2 5.1 27 47-73 63-89 (272)
470 1vt4_I APAF-1 related killer D 88.2 0.43 1.5E-05 48.2 4.7 55 34-89 135-192 (1221)
471 1in4_A RUVB, holliday junction 88.2 0.31 1.1E-05 42.4 3.4 24 50-73 53-76 (334)
472 2v9p_A Replication protein E1; 88.0 0.36 1.2E-05 41.6 3.6 26 47-73 126-151 (305)
473 1e9r_A Conjugal transfer prote 88.0 0.43 1.5E-05 43.1 4.3 36 50-87 55-90 (437)
474 1r8s_A ADP-ribosylation factor 87.9 2.5 8.7E-05 31.5 8.2 66 160-228 44-113 (164)
475 2ocp_A DGK, deoxyguanosine kin 87.7 0.35 1.2E-05 39.8 3.3 24 50-73 4-27 (241)
476 3qq5_A Small GTP-binding prote 87.7 1.6 5.5E-05 39.4 7.9 64 160-228 83-152 (423)
477 3euj_A Chromosome partition pr 87.6 0.38 1.3E-05 44.2 3.7 39 49-89 30-68 (483)
478 1tue_A Replication protein E1; 87.6 0.32 1.1E-05 39.5 2.8 24 50-73 60-83 (212)
479 2ga8_A Hypothetical 39.9 kDa p 87.4 0.6 2E-05 41.1 4.7 24 50-73 26-49 (359)
480 1zd9_A ADP-ribosylation factor 87.4 1.3 4.5E-05 34.4 6.4 65 160-228 67-136 (188)
481 4dhe_A Probable GTP-binding pr 87.4 0.92 3.1E-05 36.3 5.6 68 160-228 79-156 (223)
482 2oap_1 GSPE-2, type II secreti 87.2 0.29 9.9E-06 45.4 2.7 35 50-86 262-296 (511)
483 2obl_A ESCN; ATPase, hydrolase 87.1 0.44 1.5E-05 41.9 3.7 47 36-85 59-106 (347)
484 2ghi_A Transport protein; mult 87.1 0.18 6.3E-06 42.4 1.2 37 48-87 46-82 (260)
485 1iqp_A RFCS; clamp loader, ext 87.0 0.28 9.7E-06 42.0 2.4 39 35-73 33-71 (327)
486 3ch4_B Pmkase, phosphomevalona 87.0 0.66 2.3E-05 37.4 4.4 27 47-73 10-36 (202)
487 2vo1_A CTP synthase 1; pyrimid 87.0 0.86 2.9E-05 38.3 5.1 42 47-90 23-65 (295)
488 1q3t_A Cytidylate kinase; nucl 86.9 0.47 1.6E-05 38.9 3.6 32 50-88 18-49 (236)
489 3l0i_B RAS-related protein RAB 86.9 0.5 1.7E-05 37.3 3.7 66 160-228 82-150 (199)
490 2qmh_A HPR kinase/phosphorylas 86.9 0.43 1.5E-05 38.5 3.2 23 49-71 35-57 (205)
491 3sr0_A Adenylate kinase; phosp 86.8 0.5 1.7E-05 38.2 3.6 22 52-73 4-25 (206)
492 1lv7_A FTSH; alpha/beta domain 86.7 0.43 1.5E-05 39.6 3.3 23 51-73 48-70 (257)
493 2wjg_A FEOB, ferrous iron tran 86.7 0.55 1.9E-05 36.5 3.8 88 160-259 54-146 (188)
494 1ixz_A ATP-dependent metallopr 86.7 0.39 1.3E-05 39.7 3.0 23 51-73 52-74 (254)
495 3b60_A Lipid A export ATP-bind 86.6 0.2 6.7E-06 47.3 1.2 40 47-89 369-408 (582)
496 3qks_A DNA double-strand break 86.5 0.52 1.8E-05 37.9 3.6 26 48-73 23-48 (203)
497 2qz4_A Paraplegin; AAA+, SPG7, 86.4 0.47 1.6E-05 39.3 3.4 32 51-87 42-73 (262)
498 3tw8_B RAS-related protein RAB 86.3 0.89 3E-05 34.8 4.8 89 160-259 58-148 (181)
499 3cf0_A Transitional endoplasmi 86.2 0.62 2.1E-05 39.8 4.1 25 49-73 50-74 (301)
500 3zvl_A Bifunctional polynucleo 86.2 0.3 1E-05 44.0 2.2 26 47-72 257-282 (416)
No 1
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=100.00 E-value=3.9e-33 Score=241.17 Aligned_cols=237 Identities=43% Similarity=0.734 Sum_probs=183.4
Q ss_pred hHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcce
Q psy11347 36 IELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVF 115 (294)
Q Consensus 36 ~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~ 115 (294)
.....+++..|+++|+|+|+|||+||||+|.|||.+|+ ..|+||++||+|++++++..+|+.....+......+.+..
T Consensus 7 ~~~~a~~l~~~~~vI~v~s~kGGvGKTT~a~nLA~~la--~~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 84 (262)
T 2ph1_A 7 DEEIKERLGKIKSRIAVMSGKGGVGKSTVTALLAVHYA--RQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVL 84 (262)
T ss_dssp HHHHHHHHTTCSCEEEEECSSSCTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEE
T ss_pred hhhhhhhhccCCeEEEEEcCCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccc
Confidence 45567788999999999999999999999999999999 8899999999999998888999887554222222222222
Q ss_pred -eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEec
Q psy11347 116 -LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVT 194 (294)
Q Consensus 116 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~ 194 (294)
..++++++|.+....................++++++.+.+.+ |||||||+||+.+...+..... ..+|.+|+|+
T Consensus 85 ~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~-yD~ViID~pp~~~~~~~~~~~~---~~aD~viiv~ 160 (262)
T 2ph1_A 85 TQKYGIKVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGE-LDHLLIDLPPGTGDAPLTVMQD---AKPTGVVVVS 160 (262)
T ss_dssp CTTTCCEEECGGGGSTTCSSCCCCCSHHHHHHHHHHHHSBCCCS-CSEEEEECCSSSSSHHHHHHHH---HCCSEEEEEE
T ss_pred cCCCCeEEEeccccCCCcccchhhcCchHHHHHHHHHHHhhccC-CCEEEEECcCCCchHHHHHHhh---ccCCeEEEEe
Confidence 3478999998876654443322222334557788888775334 9999999999987654433322 2689999999
Q ss_pred CCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccC
Q psy11347 195 TPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDE 274 (294)
Q Consensus 195 ~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~ 274 (294)
.++..++..+.++++.+++.+.+..++|+|+++.+++.|..+..++. ....+++.+.+|.++++.||+++.+.++...
T Consensus 161 ~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~ 238 (262)
T 2ph1_A 161 TPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIFG--EGKGESLAKKYNIGFFTSIPIEEELIKLADS 238 (262)
T ss_dssp CSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTTC--CCCHHHHHHHTTCSEEEECCBCHHHHHHHHT
T ss_pred cCccchHHHHHHHHHHHHhCCCCEEEEEECCCccCCccccccccccc--ccHHHHHHHHcCCCeEEEeeCchHHHHhccC
Confidence 99999999999999999998999999999999876555544444331 2246778888999999999999999999999
Q ss_pred Cccccc
Q psy11347 275 GTSAID 280 (294)
Q Consensus 275 g~~v~~ 280 (294)
|+|++-
T Consensus 239 g~~~~~ 244 (262)
T 2ph1_A 239 GRIEEY 244 (262)
T ss_dssp TCGGGC
T ss_pred Cceeec
Confidence 999984
No 2
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.98 E-value=4.2e-32 Score=233.95 Aligned_cols=225 Identities=20% Similarity=0.235 Sum_probs=174.9
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc------cccccCCCCcce----
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ------VHQSASGWSPVF---- 115 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~------~~~~~~~~~~~~---- 115 (294)
|+++|+|+|+|||+||||+|.|||.+|+ ..|+||++||+|++.+++..+||..... .......+.+..
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la--~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~ 78 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLA--QKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDK 78 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHH--hCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccC
Confidence 6899999999999999999999999999 8999999999999888999999887642 111122222211
Q ss_pred eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecC
Q psy11347 116 LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTT 195 (294)
Q Consensus 116 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~ 195 (294)
..++++++|.+.... ........+.++++.++.. .||+||||+|++.+......+ ..+|.+|+|+.
T Consensus 79 ~~~~l~~lp~~~~~~--------~~~~~~~~~~~~l~~l~~~-~yD~viiD~p~~~~~~~~~~l-----~~ad~vi~v~~ 144 (260)
T 3q9l_A 79 RTENLYILPASQTRD--------KDALTREGVAKVLDDLKAM-DFEFIVCDSPAGIETGALMAL-----YFADEAIITTN 144 (260)
T ss_dssp SSTTEEEECCCSCCC--------TTSSCHHHHHHHHHHHHHT-TCSEEEEECCSSSSHHHHHHH-----HTCSEEEEEEC
T ss_pred CCCCEEEecCCCccc--------hhhCCHHHHHHHHHHHhcc-CCCEEEEcCCCCCCHHHHHHH-----HhCCEEEEEec
Confidence 237899999875421 1122345788888888731 499999999999886444433 47999999999
Q ss_pred CchhhHHHHHHHHHHHHhcCC--------CeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCch
Q psy11347 196 PQEVSLLDVRKEIDFCRKVNI--------PIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPL 267 (294)
Q Consensus 196 ~~~~s~~~~~~~l~~l~~~~~--------~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~ 267 (294)
++..++..+.++++.++..+. ...++|+|+++.+ ........ ..+++.+.+|.++++.||+++.
T Consensus 145 ~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~Ip~~~~ 216 (260)
T 3q9l_A 145 PEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG-------RVSRGDML-SMEDVLEILRIKLVGVIPEDQS 216 (260)
T ss_dssp SSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH-------HHHTTSSC-CHHHHHHHHCSEEEEEEECCHH
T ss_pred CChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcc-------cccccccc-CHHHHHHHhCCceEEecCCChh
Confidence 999999999999999986642 4789999998732 11111111 2467777889999999999999
Q ss_pred hhhhccCCccccc-CCCHHHHHHHHhhC
Q psy11347 268 VTRHCDEGTSAID-TPSACVDAIQQIVQ 294 (294)
Q Consensus 268 ~~~a~~~g~~v~~-~~s~~~~~~~~la~ 294 (294)
+.++...|+|+++ |+++++++|++|++
T Consensus 217 ~~~a~~~g~~v~~~~~s~~~~~~~~la~ 244 (260)
T 3q9l_A 217 VLRASNQGEPVILDINADAGKAYADTVE 244 (260)
T ss_dssp HHHHHHHTCCGGGCTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCeEECCCCHHHHHHHHHHH
Confidence 9999999999998 99999999999874
No 3
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.98 E-value=7.9e-32 Score=229.17 Aligned_cols=221 Identities=23% Similarity=0.309 Sum_probs=173.5
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc-c----cccccCCCCcce--e-c
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE-Q----VHQSASGWSPVF--L-E 117 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~-~----~~~~~~~~~~~~--~-~ 117 (294)
|+++|+|+|+|||+||||+|.+||.+|+ ..|+||+++|+|++.++++.+||.... . +......+.+.. . .
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la--~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~ 78 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALG--DRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQF 78 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSS
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHH--hcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCC
Confidence 5789999999999999999999999999 789999999999998899999988764 1 111122232322 1 2
Q ss_pred cCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc
Q psy11347 118 ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ 197 (294)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~ 197 (294)
++++++|.... . +.... .....+.++++.++ ++||+||||+||+........+ ..+|.+|+|+.++
T Consensus 79 ~~l~~lp~~~~-~---~~~~~---~~~~~l~~~l~~l~--~~yD~viiD~~~~~~~~~~~~~-----~~ad~vi~v~~~~ 144 (237)
T 1g3q_A 79 DNVYVLPGAVD-W---EHVLK---ADPRKLPEVIKSLK--DKFDFILIDCPAGLQLDAMSAM-----LSGEEALLVTNPE 144 (237)
T ss_dssp TTEEEECCCCS-H---HHHHH---CCGGGHHHHHHTTG--GGCSEEEEECCSSSSHHHHHHH-----TTCSEEEEEECSC
T ss_pred CCEEEEeCCCc-c---chhhh---cCHHHHHHHHHHHH--hcCCEEEEECCCCcCHHHHHHH-----HHCCeEEEEecCC
Confidence 78888883211 1 10000 01346778888887 3499999999999885544333 6899999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccCCcc
Q psy11347 198 EVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTS 277 (294)
Q Consensus 198 ~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~~ 277 (294)
..++..+.++++.+++.+.+..++|+|+++.. ... ...+++.+.+|.++++.||+++.+.++...|+|
T Consensus 145 ~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~-------~~~-----~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~ 212 (237)
T 1g3q_A 145 ISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS-------DRD-----IPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIP 212 (237)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC-------TTC-----CCHHHHHHHHCSCEEEEEECCHHHHHHHHHTSC
T ss_pred cccHHHHHHHHHHHHhCCCceEEEEEecCCcc-------cch-----hHHHHHHHHhCccceeeCCCChHHHHHHHcCCC
Confidence 99999999999999988888999999999742 111 235667777899999999999999999999999
Q ss_pred ccc--CCCHHHHHHHHhhC
Q psy11347 278 AID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 278 v~~--~~s~~~~~~~~la~ 294 (294)
+++ |+++++++|++|++
T Consensus 213 v~~~~~~~~~~~~~~~la~ 231 (237)
T 1g3q_A 213 AVKYKPESKGAKAFVKLAE 231 (237)
T ss_dssp HHHHSTTSHHHHHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHH
Confidence 998 89999999999874
No 4
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.97 E-value=2.1e-31 Score=227.57 Aligned_cols=221 Identities=17% Similarity=0.206 Sum_probs=172.1
Q ss_pred cCceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCCCCCChhhhcc-ccccc----cccccCCCCc-----
Q psy11347 45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDICGPSMPRMMG-LLNEQ----VHQSASGWSP----- 113 (294)
Q Consensus 45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~~~~~l~~~lg-~~~~~----~~~~~~~~~~----- 113 (294)
.++++|+|+|+|||+||||+|.|||.+|+ .. |+||++||+|++.++++.+|+ ..+.. +......++.
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la--~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 79 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALS--QEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDT 79 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHT--TSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHH
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHH--hCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHH
Confidence 56899999999999999999999999999 87 999999999999889999884 33321 1111111111
Q ss_pred --ceeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEE
Q psy11347 114 --VFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAI 191 (294)
Q Consensus 114 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vl 191 (294)
....++++++|.+....... ......+.++++.++ +.||+||||+||+.+......+ ..+|.+|
T Consensus 80 ~~~~~~~~l~~l~~~~~~~~~~-------~~~~~~l~~~l~~l~--~~yD~viiD~p~~~~~~~~~~l-----~~ad~vi 145 (245)
T 3ea0_A 80 MVQHISPSLDLIPSPATFEKIV-------NIEPERVSDLIHIAA--SFYDYIIVDFGASIDHVGVWVL-----EHLDELC 145 (245)
T ss_dssp HSEEEETTEEEECCCSSHHHHH-------HCCHHHHHHHHHHHH--HHCSEEEEEEESSCCTTHHHHG-----GGCSEEE
T ss_pred HhEecCCCeEEEcCCCChHhhh-------cCCHHHHHHHHHHHH--hhCCEEEEeCCCCCchHHHHHH-----HHCCEEE
Confidence 12348999999864432211 112347888888876 3399999999999876544333 5799999
Q ss_pred EecCCchhhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCc-hh
Q psy11347 192 VVTTPQEVSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDP-LV 268 (294)
Q Consensus 192 iv~~~~~~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~-~~ 268 (294)
+|+.++..++..+.++++.++..+ ....++|+||++. +..+. .+++.+.+|.++++.||++. .+
T Consensus 146 iv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~-------~~~~~------~~~~~~~~~~~v~~~ip~~~~~~ 212 (245)
T 3ea0_A 146 IVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADT-------NSRIT------SDEIEKVIGRPISKRIPQDEDAM 212 (245)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTS-------CTTSC------HHHHHHHHTSCEEEEECCCHHHH
T ss_pred EEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCC-------CCCCC------HHHHHHHhCCCeEEECCCChHHH
Confidence 999999999999999999999877 5679999999873 22222 35677778999999999995 88
Q ss_pred hhhccCCccccc--CCCHHHHHHHHhhC
Q psy11347 269 TRHCDEGTSAID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 269 ~~a~~~g~~v~~--~~s~~~~~~~~la~ 294 (294)
.++...|+|+++ |+++++++|++|++
T Consensus 213 ~~a~~~g~~v~~~~~~s~~~~~~~~la~ 240 (245)
T 3ea0_A 213 QESLLSGQSVLKVAPKSQLSKTIVDWAL 240 (245)
T ss_dssp HHHHHHTSCHHHHCTTSHHHHHHHHHHH
T ss_pred HHHHHcCCCccccCCCCHHHHHHHHHHH
Confidence 999999999998 99999999999874
No 5
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.97 E-value=3.3e-31 Score=228.92 Aligned_cols=221 Identities=23% Similarity=0.322 Sum_probs=172.9
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc-c----cccccCCCCcce--ecc
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE-Q----VHQSASGWSPVF--LEE 118 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~-~----~~~~~~~~~~~~--~~~ 118 (294)
|+++|+|+|+|||+||||+|.+||.+|+ ..|++|++||+|++.++++.+||.... . +......+.+.. ..+
T Consensus 1 M~~~I~v~s~kgGvGKTt~a~~LA~~la--~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~~~ 78 (263)
T 1hyq_A 1 MVRTITVASGKGGTGKTTITANLGVALA--QLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPG 78 (263)
T ss_dssp -CEEEEEEESSSCSCHHHHHHHHHHHHH--HTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGG
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHH--hCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhheeCCC
Confidence 5789999999999999999999999999 789999999999988899999988764 1 111112222221 237
Q ss_pred CeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch
Q psy11347 119 NLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE 198 (294)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~ 198 (294)
+++++|..... +.... .....+.++++.++ ++||+||||+||+........+ ..+|.+|+|+.++.
T Consensus 79 ~l~~lp~~~~~----~~~~~---~~~~~l~~~l~~l~--~~yD~viiD~~~~~~~~~~~~~-----~~ad~vi~v~~~~~ 144 (263)
T 1hyq_A 79 GVKVVPAGVSL----EGLRK---ANPEKLEDVLTQIM--ESTDILLLDAPAGLERSAVIAI-----AAAQELLLVVNPEI 144 (263)
T ss_dssp GCEEEECCSCH----HHHHH---HCHHHHHHHHHHHH--HTCSEEEEECCSSSSHHHHHHH-----HHSSEEEEEECSSH
T ss_pred CeEEEcCCCCc----Chhhc---cChHHHHHHHHHHH--hhCCEEEEeCCCCCChHHHHHH-----HHCCEEEEEeCCCh
Confidence 88998833111 10000 01446778888876 3499999999999885544443 46899999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhccCCccc
Q psy11347 199 VSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSA 278 (294)
Q Consensus 199 ~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~~~g~~v 278 (294)
.++..+.++++.+++.+.+..++|+|+++.. .. ....+++.+.+|.++++.||+++.+.++...|+|+
T Consensus 145 ~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~-------~~-----~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v 212 (263)
T 1hyq_A 145 SSITDGLKTKIVAERLGTKVLGVVVNRITTL-------GI-----EMAKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPV 212 (263)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEEEEECTT-------TH-----HHHHHHHHHHTTSCEEEEEECCHHHHHHHHHTSCH
T ss_pred hHHHHHHHHHHHHHhcCCCeeEEEEccCCcc-------cc-----cchHHHHHHHhCCCeEEECCCCHHHHHHHHcCCce
Confidence 9999999999999988888999999998731 11 13467777788999999999999999999999999
Q ss_pred cc--CCCHHHHHHHHhhC
Q psy11347 279 ID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 279 ~~--~~s~~~~~~~~la~ 294 (294)
++ |+++++++|++|++
T Consensus 213 ~~~~~~~~~~~~~~~la~ 230 (263)
T 1hyq_A 213 VLRSPNSPAARAIVELAN 230 (263)
T ss_dssp HHHCTTSHHHHHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHH
Confidence 88 89999999999873
No 6
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.97 E-value=8.3e-30 Score=211.91 Aligned_cols=192 Identities=13% Similarity=0.119 Sum_probs=155.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
|++|+|+|+|||+||||+|.+||..|+ ..|++|+++|+|++. ++..+++... .++++++.+
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la--~~g~~vlliD~D~~~-~~~~~~~~~~----------------~~~~~~~~~ 61 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALS--RSGYNIAVVDTDPQM-SLTNWSKAGK----------------AAFDVFTAA 61 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCTTC-HHHHHHTTSC----------------CSSEEEECC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHH--HCCCeEEEEECCCCC-CHHHHHhcCC----------------CCCcEEecC
Confidence 689999999999999999999999999 899999999999876 4444444221 236666653
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHH
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRK 206 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~ 206 (294)
. ..+.+.++.+. ++||+||||+||+........+ ..+|.+|+|+.++..+ ..+.+
T Consensus 62 ~-----------------~~l~~~l~~l~--~~yD~viiD~~~~~~~~~~~~l-----~~ad~viiv~~~~~~~-~~~~~ 116 (206)
T 4dzz_A 62 S-----------------EKDVYGIRKDL--ADYDFAIVDGAGSLSVITSAAV-----MVSDLVIIPVTPSPLD-FSAAG 116 (206)
T ss_dssp S-----------------HHHHHTHHHHT--TTSSEEEEECCSSSSHHHHHHH-----HHCSEEEEEECSCTTT-HHHHH
T ss_pred c-----------------HHHHHHHHHhc--CCCCEEEEECCCCCCHHHHHHH-----HHCCEEEEEecCCHHH-HHHHH
Confidence 2 36778888887 3499999999999976544444 4689999999999999 99999
Q ss_pred HHHHHHhcC-----CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee-eccCCCchhhhhccCCccccc
Q psy11347 207 EIDFCRKVN-----IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL-GSVPIDPLVTRHCDEGTSAID 280 (294)
Q Consensus 207 ~l~~l~~~~-----~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l-~~Ip~~~~~~~a~~~g~~v~~ 280 (294)
+++.+++.+ .+ +++|+||++. +... ...+.++++.+|.+++ +.||+++.+.++...|+|+++
T Consensus 117 ~~~~l~~~~~~~~~~~-~~vv~N~~~~-------~~~~----~~~~~~~l~~~~~~vl~~~Ip~~~~~~~a~~~g~~v~~ 184 (206)
T 4dzz_A 117 SVVTVLEAQAYSRKVE-ARFLITRKIE-------MATM----LNVLKESIKDTGVKAFRTAITQRQVYVKSILDGDSVFE 184 (206)
T ss_dssp HHHHHHTTSCGGGCCE-EEEEECSBCT-------TEEE----EHHHHHHHHHHTCCBCSSCCBCCHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHhCCCCc-EEEEEeccCC-------CchH----HHHHHHHHHHcCCceeeccccccHHHHHHHHcCCCccc
Confidence 999998664 34 4999999973 2222 2345677777899999 899999999999999999999
Q ss_pred -CCCHHHHHHHHhhC
Q psy11347 281 -TPSACVDAIQQIVQ 294 (294)
Q Consensus 281 -~~s~~~~~~~~la~ 294 (294)
|+++++++|++|++
T Consensus 185 ~~~s~~~~~~~~la~ 199 (206)
T 4dzz_A 185 SSDGAAKGEIEILTK 199 (206)
T ss_dssp SSCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHH
Confidence 99999999999873
No 7
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.97 E-value=1e-29 Score=224.60 Aligned_cols=221 Identities=14% Similarity=0.070 Sum_probs=165.2
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----cccc------cCCCCcc-
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQS------ASGWSPV- 114 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~~------~~~~~~~- 114 (294)
.+++|+|+ +|||+||||+|.|||.+|+ ..|+||++||+|+++ ++...|+..... +... ...+.++
T Consensus 40 ~~~vI~v~-~KGGvGKTT~a~nLA~~La--~~G~~VlliD~D~~~-~~~~~l~~~~~~~l~d~l~~~~~~~~~~~~~~~i 115 (307)
T 3end_A 40 GAKVFAVY-GKGGIGKSTTSSNLSAAFS--ILGKRVLQIGCDPKH-DSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFV 115 (307)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHH--HTTCCEEEEEESSSC-CTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHC
T ss_pred CceEEEEE-CCCCccHHHHHHHHHHHHH--HCCCeEEEEeCCCCC-CHHHHhCccCCCCHHHHHhhccccccCCCHHHhh
Confidence 57899999 8999999999999999999 889999999999976 555666544331 1111 1111111
Q ss_pred -eeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEe
Q psy11347 115 -FLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVV 193 (294)
Q Consensus 115 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv 193 (294)
...++++++|++.......... ........+++.+...+.||+||||+|++...... ...+ ..+|.+|+|
T Consensus 116 ~~~~~~l~vlp~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~yD~ViiD~p~~~~~~~~--~~~l--~~aD~viiv 186 (307)
T 3end_A 116 FEGFNGVMCVEAGGPPAGTGCGG-----YVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGF--AAPL--QHADQAVVV 186 (307)
T ss_dssp EECGGGCEEEECCCCCSSSSCTT-----HHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGG--GGGG--GTCSEEEEE
T ss_pred ccCCCCceEEECCCcccccccch-----hhhHHHHHHHHhhhccccCCEEEEeCCCccchHHH--HHHH--HHCCEEEEE
Confidence 2348999999886544332111 11223445666532234599999999988763221 1222 579999999
Q ss_pred cCCchhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhh
Q psy11347 194 TTPQEVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVT 269 (294)
Q Consensus 194 ~~~~~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~ 269 (294)
+.++..++..+.++++.++.. +.+..++|+||++. ...++++.+.+|.++++.||+++.+.
T Consensus 187 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~---------------~~~~~~~~~~~g~~v~~~Ip~~~~v~ 251 (307)
T 3end_A 187 TANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA---------------TDEVDRFCKETNFRRLAHMPDLDAIR 251 (307)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC---------------CHHHHHHHHHHTCCEEEEECCCHHHH
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc---------------HHHHHHHHHHcCCCceeeCCccHHHH
Confidence 999999999999999999863 56678999999862 24578888889999999999999999
Q ss_pred hhccCCccccc--CC---CHHHHHHHHhhC
Q psy11347 270 RHCDEGTSAID--TP---SACVDAIQQIVQ 294 (294)
Q Consensus 270 ~a~~~g~~v~~--~~---s~~~~~~~~la~ 294 (294)
++...|+|+++ |+ ++++++|++|++
T Consensus 252 ~a~~~g~~v~~~~p~~~~s~~~~~~~~la~ 281 (307)
T 3end_A 252 RSRLKKKTLFEMDEDQDVLAARAEYIRLAE 281 (307)
T ss_dssp HHHHTTCCTTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCeEeeCCccccHHHHHHHHHHHH
Confidence 99999999999 77 899999999873
No 8
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.97 E-value=1.2e-30 Score=224.94 Aligned_cols=223 Identities=19% Similarity=0.244 Sum_probs=162.5
Q ss_pred cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----cccccCCCCccee-ccC
Q psy11347 45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQSASGWSPVFL-EEN 119 (294)
Q Consensus 45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~~~~~~~~~~~-~~~ 119 (294)
..+++|+|+|+|||+||||+|.|||.+|+ ..|+||++||+|++ +++..+|+..... +.... .+.+... .++
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la--~~g~~VlliD~D~~-~~~~~~l~~~~~~~l~~~l~~~-~~~~~i~~~~~ 79 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLA--RLGKRVLLVDLDPQ-GNATSGLGVRAERGVYHLLQGE-PLEGLVHPVDG 79 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHH--HTTCCEEEEECCTT-CHHHHHTTCCCSCCHHHHHTTC-CGGGTCEEETT
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHH--HCCCCEEEEECCCC-cCHHHHhCCCCCCCHHHHHcCC-CHHHHccccCC
Confidence 45899999999999999999999999999 78999999999997 4678888876531 11111 2322222 478
Q ss_pred eEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchh
Q psy11347 120 LSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEV 199 (294)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~ 199 (294)
++++|++.........+ .... ..+.++++. ++||+||||+||+.+......+ ..+|.+|+|+.++..
T Consensus 80 l~vlp~~~~~~~~~~~l--~~~~--~~l~~~l~~----~~yD~iiiD~pp~~~~~~~~~l-----~~aD~viiv~~~~~~ 146 (257)
T 1wcv_1 80 FHLLPATPDLVGATVEL--AGAP--TALREALRD----EGYDLVLLDAPPSLSPLTLNAL-----AAAEGVVVPVQAEYY 146 (257)
T ss_dssp EEEECCCTTHHHHHHHH--TTCT--THHHHHCCC----TTCSEEEEECCSSCCHHHHHHH-----HHCSEEEEEEESSTH
T ss_pred EEEEeCChhHHHHHHHH--hhHH--HHHHHHhcc----cCCCEEEEeCCCCCCHHHHHHH-----HHCCeEEEEecCchH
Confidence 99998864332111000 0000 345555554 3399999999999876543333 368999999999999
Q ss_pred hHHHHHHHHHHHHhc------CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee-eccCCCchhhhhc
Q psy11347 200 SLLDVRKEIDFCRKV------NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL-GSVPIDPLVTRHC 272 (294)
Q Consensus 200 s~~~~~~~l~~l~~~------~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l-~~Ip~~~~~~~a~ 272 (294)
++..+.++++.++.. +.+..++|+|+++. +.... .+..+.+.+.+|.+++ +.||++..+.++.
T Consensus 147 s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~-------~~~~~---~~~~~~l~~~~~~~~~~~~Ip~~~~~~~a~ 216 (257)
T 1wcv_1 147 ALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDG-------RTLLA---QQVEAQLRAHFGEKVFWTVIPRNVRLAEAP 216 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCT-------TCSHH---HHHHHHHHHHHGGGBCSCCCBCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECC-------CcHHH---HHHHHHHHHHccccccCccCCCcHHHHHHH
Confidence 999988888887642 45667999999873 21111 2334556666788877 7899999999999
Q ss_pred cCCccccc--CCCHHHHHHHHhhC
Q psy11347 273 DEGTSAID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 273 ~~g~~v~~--~~s~~~~~~~~la~ 294 (294)
..|+|+++ |+++++++|++|++
T Consensus 217 ~~g~~v~~~~~~~~~~~~~~~la~ 240 (257)
T 1wcv_1 217 SFGKTIAQHAPTSPGAHAYRRLAE 240 (257)
T ss_dssp HHTCCHHHHCTTSHHHHHHHHHHH
T ss_pred HcCCCHHHhCCCChHHHHHHHHHH
Confidence 99999998 89999999999873
No 9
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.97 E-value=3.9e-29 Score=213.98 Aligned_cols=216 Identities=18% Similarity=0.189 Sum_probs=163.9
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccc------------ccc--------
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVH------------QSA-------- 108 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~------------~~~-------- 108 (294)
+|+| ++|||+||||+|.|||..|+ ..|+||++||+|++ ++++.+||....... ...
T Consensus 2 kI~v-s~kGGvGKTt~a~~LA~~la--~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (254)
T 3kjh_A 2 KLAV-AGKGGVGKTTVAAGLIKIMA--SDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLI 77 (254)
T ss_dssp EEEE-ECSSSHHHHHHHHHHHHHHT--TTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCC
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccc
Confidence 3778 88999999999999999999 89999999999997 899999988765320 000
Q ss_pred --CCCCcc-----eeccCeEE-EecccccCCCCcceeecCccchHHHHHHHHhh-ccCCCccEEEEcCCCCCChHHHHHH
Q psy11347 109 --SGWSPV-----FLEENLSV-MSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEV-DWGNGLEYLLIDTPPGTSDEHLSLV 179 (294)
Q Consensus 109 --~~~~~~-----~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~yd~IiiD~p~~~~~~~~~~~ 179 (294)
..++.+ ....++++ ++.+.......... ......++++++.+ . +.||+||||+||+.+......+
T Consensus 78 ~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~l~~~l~~l~~--~~yD~viiD~pp~~~~~~~~~l 151 (254)
T 3kjh_A 78 LNPKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCY----CRENSFLGSVVSALFL--DKKEAVVMDMGAGIEHLTRGTA 151 (254)
T ss_dssp SSCCCTTSGGGSSEESSSSEEEEECCCCCCCCSSCC----HHHHHHHHHHHHHHHH--TCCSEEEEEECTTCTTCCHHHH
T ss_pred cCCchhccHHhcccccCCeEEEEEecccccCCCCCC----cchHHHHHHHHHHhcc--CCCCEEEEeCCCcccHHHHHHH
Confidence 111111 12245666 66553322222111 11114688888888 5 3499999999999876444444
Q ss_pred HHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcC-Cce
Q psy11347 180 QYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELS-VPF 258 (294)
Q Consensus 180 ~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g-~~~ 258 (294)
..+|.+|+|+.++..++..+.++++.+.+.+.+.+++|+|+++. ....+++.+.++ .++
T Consensus 152 -----~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~---------------~~~~~~~~~~~~~~~~ 211 (254)
T 3kjh_A 152 -----KAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN---------------IKEEKLIKKHLPEDKI 211 (254)
T ss_dssp -----TTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC---------------HHHHHHHHHHSCGGGE
T ss_pred -----HHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC---------------hhHHHHHHHHhcCCcc
Confidence 68999999999999999999999999999898889999999862 123566777776 778
Q ss_pred eeccCCCchhhhhccCCcccccCCCHHHHHHHHhhC
Q psy11347 259 LGSVPIDPLVTRHCDEGTSAIDTPSACVDAIQQIVQ 294 (294)
Q Consensus 259 l~~Ip~~~~~~~a~~~g~~v~~~~s~~~~~~~~la~ 294 (294)
.+.||+++.+.++...|+|+++..++++++|++|++
T Consensus 212 ~~~Ip~~~~~~~a~~~g~~~~~~~~~~~~~~~~la~ 247 (254)
T 3kjh_A 212 LGIIPYNELFIELSLKGEEIWQSTNPAFVNLHDIYQ 247 (254)
T ss_dssp EEEEECCHHHHSCSSSSCCTTSTTSTTHHHHHHHHH
T ss_pred cccccCcHHHHHHHhCCCccccCCcHHHHHHHHHHH
Confidence 899999999999999999999944479999998873
No 10
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.97 E-value=2e-29 Score=222.60 Aligned_cols=222 Identities=16% Similarity=0.118 Sum_probs=159.8
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccc----cC-----CCCcc--
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQS----AS-----GWSPV-- 114 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~----~~-----~~~~~-- 114 (294)
..|+|+|. |||||||||+|.|||.+|+ ..|+||++||+|++.++...+++......... .. .+++.
T Consensus 47 ~aKVIAIa-GKGGVGKTTtavNLA~aLA--~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~ 123 (314)
T 3fwy_A 47 GAKVFAVY-GKGGIGKSTTSSNLSAAFS--ILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVF 123 (314)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHH--HTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCE
T ss_pred CceEEEEE-CCCccCHHHHHHHHHHHHH--HCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHhee
Confidence 37888887 7999999999999999999 89999999999999877665554443321110 00 11111
Q ss_pred eeccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEec
Q psy11347 115 FLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVT 194 (294)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~ 194 (294)
....++.+++++......... .......+..+.+. ...+.||+|++|++++.....+ .+++ ..+|.+|+|+
T Consensus 124 ~~~~~i~~v~~~~~~~~~~~~----~~~~~~~~~~l~~~-~~~d~~D~v~iD~~~~~~~~~~--~~al--~aAd~viIvt 194 (314)
T 3fwy_A 124 EGFNGVMCVEAGGPPAGTGCG----GYVVGQTVKLLKQH-HLLDDTDVVIFDVLGDVVCGGF--AAPL--QHADQAVVVT 194 (314)
T ss_dssp ECGGGCEEEECCCCCTTCSCT----THHHHHHHHHHHHT-TTTSSCSEEEEEECCSSCCGGG--GGGG--GTCSEEEEEE
T ss_pred ecCCCeEEEeCCCCcccchhh----hccHHHHHHHHHhc-chhhcCceEeeccCCcchhhhh--HhHH--hhCCeEEEEe
Confidence 123678888887544332211 11112233333332 2224599999999988754332 2334 4799999999
Q ss_pred CCchhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhh
Q psy11347 195 TPQEVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTR 270 (294)
Q Consensus 195 ~~~~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~ 270 (294)
+++..++.++.++++.++.. +.++.|+|.|+... ...++++.+.++.++++.||.+..+.+
T Consensus 195 ~~e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~---------------~~~v~~~a~~~~~~~lg~IP~d~~Vr~ 259 (314)
T 3fwy_A 195 ANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA---------------TDEVDRFCKETNFRRLAHMPDLDAIRR 259 (314)
T ss_dssp CSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC---------------CHHHHHHHHHHTCCEEEEECCCHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCc---------------hhHHHHHHHHhCCeEEEEecCchHHHH
Confidence 99999999999999988754 45678899998542 235688889999999999999999999
Q ss_pred hccCCccccc--CCCHHHHH---HHHhhC
Q psy11347 271 HCDEGTSAID--TPSACVDA---IQQIVQ 294 (294)
Q Consensus 271 a~~~g~~v~~--~~s~~~~~---~~~la~ 294 (294)
+...|+|+++ |+|+.+.. |++||+
T Consensus 260 a~~~G~pvv~~~P~S~~a~aa~~Y~~LA~ 288 (314)
T 3fwy_A 260 SRLKKKTLFEMDEDQDVLAARAEYIRLAE 288 (314)
T ss_dssp HHHTTCCTTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCceEEECCCChhhHHHHHHHHHHH
Confidence 9999999998 89876555 999874
No 11
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.97 E-value=8.2e-30 Score=220.89 Aligned_cols=226 Identities=16% Similarity=0.196 Sum_probs=161.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----ccccc---CCCCcc--eec
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQSA---SGWSPV--FLE 117 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~~~---~~~~~~--~~~ 117 (294)
|++|+| ++|||+||||+|.|||..|+ ..|+||++||+|++++.+..+++..... +.... ..+.++ ...
T Consensus 1 M~vI~v-s~KGGvGKTT~a~nLA~~la--~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~ 77 (269)
T 1cp2_A 1 MRQVAI-YGKGGIGKSTTTQNLTSGLH--AMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGY 77 (269)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHH--TTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECG
T ss_pred CcEEEE-ecCCCCcHHHHHHHHHHHHH--HCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCC
Confidence 578899 68999999999999999999 8999999999999988877777654331 11110 111111 234
Q ss_pred cCeEEEecccccCCCCcceeecCccchHHHHHHHHhhc-cCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCC
Q psy11347 118 ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVD-WGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP 196 (294)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~ 196 (294)
++++++|.+......... .. .......+++.+. +.++|||||||+|+......+... +....+|.+|+|+.+
T Consensus 78 ~~l~vl~~~~~~~~~~~~----~~-~~~~~~~~~~~l~~l~~~yD~iiiD~~~~~~~~~~~~~--~~~~~aD~viiv~~~ 150 (269)
T 1cp2_A 78 GGIRCVESGGPEPGVGCA----GR-GIITSINMLEQLGAYTDDLDYVFYDVLGDVVCGGFAMP--IREGKAQEIYIVASG 150 (269)
T ss_dssp GGCEEEECCCCCTTSSCH----HH-HHHHHHHHHHHTTCCCTTCSEEEEEEECSSCSTTTTHH--HHTTSCCEEEEEECS
T ss_pred CCeeEEeCCCchhhcccc----Cc-chhhHHHHHHHHHhhccCCCEEEEeCCchhhhhhhhhh--hhHhhCCEEEEeecC
Confidence 789999987543322100 00 0001112333332 124599999999986643211111 111479999999999
Q ss_pred chhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhhhc
Q psy11347 197 QEVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHC 272 (294)
Q Consensus 197 ~~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~a~ 272 (294)
+..++..+.++++.++.. +.+..++|+|+++.. ...+..+++.+.+|.++++.||+++.+.++.
T Consensus 151 ~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~------------~~~~~~~~l~~~~~~~v~~~Ip~~~~~~~a~ 218 (269)
T 1cp2_A 151 EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA------------NEYELLDAFAKELGSQLIHFVPRSPMVTKAE 218 (269)
T ss_dssp SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS------------CCHHHHHHHHHHHTCCEEEEECCCHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc------------hhHHHHHHHHHHcCCcccccCCCCcHHHHHH
Confidence 999999999999888753 456789999997521 1234567777888999999999999999999
Q ss_pred cCCccccc--CCCHHHHHHHHhhC
Q psy11347 273 DEGTSAID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 273 ~~g~~v~~--~~s~~~~~~~~la~ 294 (294)
..|+|+++ |+++++++|.+|++
T Consensus 219 ~~g~~v~~~~~~s~~~~~~~~l~~ 242 (269)
T 1cp2_A 219 INKQTVIEYDPTCEQAEEYRELAR 242 (269)
T ss_dssp HTTSCHHHHCTTSHHHHHHHHHHH
T ss_pred HcCCceEEECCCChHHHHHHHHHH
Confidence 99999998 89999999999873
No 12
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.96 E-value=1.6e-29 Score=221.43 Aligned_cols=226 Identities=16% Similarity=0.160 Sum_probs=160.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----ccccc-----CCCCcc--e
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQSA-----SGWSPV--F 115 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~~~-----~~~~~~--~ 115 (294)
|++|+| ++|||+||||+|.|||.+|+ ..|+||++||+|++++.+..+++..... +.... ..+.++ .
T Consensus 2 MkvIav-s~KGGvGKTT~a~nLA~~La--~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~ 78 (289)
T 2afh_E 2 MRQCAI-YGKGGIGKSTTTQNLVAALA--EMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKA 78 (289)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHH--HTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEE
T ss_pred ceEEEE-eCCCcCcHHHHHHHHHHHHH--HCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhcc
Confidence 688999 68999999999999999999 8899999999999988877776654331 11111 111111 2
Q ss_pred eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhc-cCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEec
Q psy11347 116 LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVD-WGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVT 194 (294)
Q Consensus 116 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~ 194 (294)
..++++++|.+......... .........+++.+. +.++|||||||+|+......+... +....+|.+|+|+
T Consensus 79 ~~~~l~~l~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~~~~~--~~~~~aD~viiv~ 151 (289)
T 2afh_E 79 GYGGVKCVESGGPEPGVGCA-----GRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVCGGFAMP--IRENKAQEIYIVC 151 (289)
T ss_dssp CGGGCEEEECCCCCTTTCCH-----HHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCCTTTTHH--HHTTCCCEEEEEE
T ss_pred CCCCeEEEeCCCcccccccc-----chhhhHHHHHHHHHHhhccCCCEEEEeCCCccccchhhhh--hhhhhCCEEEEEe
Confidence 24789999987543221100 000001123444443 124599999999986543211111 1114799999999
Q ss_pred CCchhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchhhh
Q psy11347 195 TPQEVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTR 270 (294)
Q Consensus 195 ~~~~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~~~ 270 (294)
.++..++..+.++++.++.. +.+..++|+|+++. . ...+..+++.+.+|.++++.||++..+.+
T Consensus 152 ~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~-------~-----~~~~~~~~l~~~~g~~~l~~Ip~~~~~~~ 219 (289)
T 2afh_E 152 SGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT-------D-----REDELIIALANKLGTQMIHFVPRDNVVQR 219 (289)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC-------T-----THHHHHHHHHHHHTSCEEEEECCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc-------h-----hHHHHHHHHHHHcCccccccCCCchhHHH
Confidence 99999999999888888653 66778999999752 1 11345677777889999999999999999
Q ss_pred hccCCccccc--CCCHHHHHHHHhhC
Q psy11347 271 HCDEGTSAID--TPSACVDAIQQIVQ 294 (294)
Q Consensus 271 a~~~g~~v~~--~~s~~~~~~~~la~ 294 (294)
+...|+|+++ |+++++++|++|++
T Consensus 220 a~~~g~~v~~~~~~s~~~~~~~~la~ 245 (289)
T 2afh_E 220 AEIRRMTVIEYDPKAKQADEYRALAR 245 (289)
T ss_dssp HHHTTSCHHHHCTTSHHHHHHHHHHH
T ss_pred HHHcCCCceeeCCCCHHHHHHHHHHH
Confidence 9999999998 99999999999874
No 13
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.96 E-value=1.2e-28 Score=213.53 Aligned_cols=225 Identities=18% Similarity=0.181 Sum_probs=147.8
Q ss_pred hhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccc--------c---ccccccCC
Q psy11347 42 HLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLN--------E---QVHQSASG 110 (294)
Q Consensus 42 ~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~--------~---~~~~~~~~ 110 (294)
....++++|+|+|+|||+||||+|.|||..|+ .|+||++||+|++++....+++... . ........
T Consensus 22 ~~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la---~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 98 (267)
T 3k9g_A 22 MDNKKPKIITIASIKGGVGKSTSAIILATLLS---KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVD 98 (267)
T ss_dssp ----CCEEEEECCSSSSSCHHHHHHHHHHHHT---TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSC
T ss_pred CCCCCCeEEEEEeCCCCchHHHHHHHHHHHHH---CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCC
Confidence 33456899999999999999999999999999 4899999999998744433322111 0 11111222
Q ss_pred CCcce--eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCc
Q psy11347 111 WSPVF--LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDI 188 (294)
Q Consensus 111 ~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad 188 (294)
+.+.. ..++++++|.+.......... .......+..+++.+. +.||+||||+||+.+......+ ..+|
T Consensus 99 ~~~~i~~~~~~l~~lp~~~~~~~~~~~~---~~~~~~~l~~~l~~l~--~~yD~viiD~pp~~~~~~~~~l-----~~aD 168 (267)
T 3k9g_A 99 IDSTIINVDNNLDLIPSYLTLHNFSEDK---IEHKDFLLKTSLGTLY--YKYDYIVIDTNPSLDVTLKNAL-----LCSD 168 (267)
T ss_dssp GGGGCEEEETTEEEECCCGGGGGTTTCC---CTTGGGHHHHHHHTTC--TTCSEEEEEECSSCSHHHHHHH-----TTCS
T ss_pred HHHhhccCCCCEEEEeCChHHHHHHHhh---hhhHHHHHHHHHHHhh--cCCCEEEEECcCCccHHHHHHH-----HHCC
Confidence 22222 248999999987665444322 1223457888999887 4499999999999976544333 5799
Q ss_pred EEEEecCCchhhHHHHHHHHHHHHhcCCC-eeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCch
Q psy11347 189 GAIVVTTPQEVSLLDVRKEIDFCRKVNIP-IIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPL 267 (294)
Q Consensus 189 ~vliv~~~~~~s~~~~~~~l~~l~~~~~~-~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~ 267 (294)
.+|+|+.++..++..+.++++.++..+.+ .+++|+||+.. .... .+..+.+ +. +.++++.||+++.
T Consensus 169 ~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~--------~~~~---~~~~~~l-~~-~~~~~~~Ip~~~~ 235 (267)
T 3k9g_A 169 YVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK--------NRTH---KTLFEIL-KT-KDRFLGTISERED 235 (267)
T ss_dssp EEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT--------TCSC---CHHHHHH-TT-STTEEEEEEC---
T ss_pred eEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC--------cchH---HHHHHHH-hc-CcccceecCcHHH
Confidence 99999999999999999999999988643 36799999841 1111 2233333 33 7899999999999
Q ss_pred hhhhccCCcccccCCCHHHHHHHHhh
Q psy11347 268 VTRHCDEGTSAIDTPSACVDAIQQIV 293 (294)
Q Consensus 268 ~~~a~~~g~~v~~~~s~~~~~~~~la 293 (294)
+.++...|.++.. .+++.++|++++
T Consensus 236 ~~~a~~~g~~~~~-~~~~~~~~~~i~ 260 (267)
T 3k9g_A 236 LNRRIAENNNFDL-NKDYIKEYENIL 260 (267)
T ss_dssp --------------CCHHHHHHHHHH
T ss_pred HHHHHHhcCCcch-hHHHHHHHHHHH
Confidence 9999999987655 577888888876
No 14
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.95 E-value=1.2e-29 Score=222.04 Aligned_cols=221 Identities=16% Similarity=0.114 Sum_probs=155.6
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCe-EEEe
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENL-SVMS 124 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l-~~~~ 124 (294)
|+++|+|+|+|||+||||+|.|||..|+ ..|+||++||+|+.++++..+++......... ......++ +++|
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La--~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~-----~~~~~~~l~~vl~ 75 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALL--YGGAKVAVIDLDLRQRTSARFFENRRAWLDNK-----KIELPEPLALNLS 75 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHH--HTTCCEEEEECCTTTCHHHHHHHHHHHHHHHH-----TCCCCCCEEECSS
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCCCCCCHHHHhCCChhHhHhc-----cccCCCchheEee
Confidence 6789999999999999999999999999 88999999999996678888887654311110 01123456 6666
Q ss_pred ccc-ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHH
Q psy11347 125 IGF-LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLD 203 (294)
Q Consensus 125 ~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~ 203 (294)
.+. ......+ ......+.++++.++ ++|||||||+||+........+ ..+|.+|+|+.++..++..
T Consensus 76 ~~~~~~~~~~~------~~~~~~l~~~l~~l~--~~yD~viiD~p~~~~~~~~~~l-----~~aD~viiv~~~~~~~~~~ 142 (286)
T 2xj4_A 76 DNDVALAERPE------EEQVAGFEAAFARAM--AECDFILIDTPGGDSAITRMAH-----GRADLVVTPMNDSFVDFDM 142 (286)
T ss_dssp SCHHHHTTSCH------HHHHHHHHHHHHHHH--HHCSEEEEECCSSCCHHHHHHH-----HTCSEEEEEEESSHHHHTT
T ss_pred CCCCCCcChhh------hhhHHHHHHHHHHHH--hcCCEEEEcCCCCccHHHHHHH-----HHCCEEEEEEcCCccHHHH
Confidence 521 1111111 112346778888876 3399999999999975544443 5799999999999999887
Q ss_pred HHHHHHH-------------H---Hh-------cC-CCeeEEEeccccccCCCCCCCC-ccCCCCchhHHHHHhhcCCce
Q psy11347 204 VRKEIDF-------------C---RK-------VN-IPIIGVVENMATFVCPKCTKPS-EIFPKDSGGAEKMCAELSVPF 258 (294)
Q Consensus 204 ~~~~l~~-------------l---~~-------~~-~~~~~vvvN~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~g~~~ 258 (294)
+.++++. + ++ .+ .+ +++|+||++. .. ...+...+.+++..+.+|.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~vV~N~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~ 214 (286)
T 2xj4_A 143 LGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD-WVVLRNRLAT-------TEARNRKRLEDRLNALAKRVGFRI 214 (286)
T ss_dssp TEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE-EEEEEECCTT-------CCGGGHHHHHHHHHHHHHHHCCEE
T ss_pred HHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc-EEEEEeeecC-------CCcchhHHHHHHHHHHHHHcCCcc
Confidence 6655444 4 31 13 33 6799999873 22 112111222233333378877
Q ss_pred eeccCCCchhhhhccCCccccc--C----------CCHHHHHHHHhhC
Q psy11347 259 LGSVPIDPLVTRHCDEGTSAID--T----------PSACVDAIQQIVQ 294 (294)
Q Consensus 259 l~~Ip~~~~~~~a~~~g~~v~~--~----------~s~~~~~~~~la~ 294 (294)
.+.||++..+.++...|+|+++ | +++++++|++|++
T Consensus 215 ~~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~s~~~~~~~~la~ 262 (286)
T 2xj4_A 215 GPGLRDRVIYRELFPFGLTIADLSPQVRPVPVSLQHLAARQELRALMH 262 (286)
T ss_dssp EECCCCCHHHHHHGGGTCCGGGCBTTBCCSCCCSTTHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHcCCCHHHhCccccccccccccchHHHHHHHHHH
Confidence 7899999999999999999998 7 8999999999873
No 15
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.95 E-value=1.1e-28 Score=216.96 Aligned_cols=239 Identities=16% Similarity=0.241 Sum_probs=169.9
Q ss_pred hHHHHhhhccCceEEEEEe--cCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh---hhhcccccc--cc---c
Q psy11347 36 IELVKSHLSNVKHKVLVLS--GKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM---PRMMGLLNE--QV---H 105 (294)
Q Consensus 36 ~~~i~~~~~~~~~~i~v~s--~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l---~~~lg~~~~--~~---~ 105 (294)
...+++.+..+.++|+|++ +|||+||||+|.|||..|+ ..|+||++||+|++++.. ...++.... .+ .
T Consensus 23 ~~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la--~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l 100 (298)
T 2oze_A 23 LEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTD--KLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGL 100 (298)
T ss_dssp HHHHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHH
T ss_pred HHHHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHH--hCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHH
Confidence 4556666667788999999 8999999999999999999 899999999999986432 122343321 01 1
Q ss_pred cccCCCCc--ceeccCeEEEecccccCCCCccee-ecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHh
Q psy11347 106 QSASGWSP--VFLEENLSVMSIGFLLNSPDDAVI-WRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYL 182 (294)
Q Consensus 106 ~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l 182 (294)
... .+.+ ....++++++|++..+........ +........++.+++.+. ++||+||||+||+.+......+
T Consensus 101 ~~~-~~~~~~~~~~~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~--~~yD~IiiD~pp~~~~~~~~~l--- 174 (298)
T 2oze_A 101 KNG-NLASSIVHLTDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK--SDYDLIIIDTVPTPSVYTNNAI--- 174 (298)
T ss_dssp HHT-CCGGGCEESSSSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG--GGCSEEEEEECSSCSHHHHHHH---
T ss_pred hcC-ChhhhhcccCCCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh--cCCCEEEEECCCCccHHHHHHH---
Confidence 111 1111 112478999998765432111000 000012245888888887 3499999999999986444333
Q ss_pred hcCCCcEEEEecCCchhhHHHHHHHHHHHHh------cCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCC
Q psy11347 183 KGLPDIGAIVVTTPQEVSLLDVRKEIDFCRK------VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSV 256 (294)
Q Consensus 183 ~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~------~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~ 256 (294)
..+|.+|+|+.++..++..+.++++.+++ .+++..++|+||++. +... ..+..+++.+.++.
T Consensus 175 --~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~-------~~~~---~~~~~~~~~~~~~~ 242 (298)
T 2oze_A 175 --VASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDT-------DSAT---IKSNLEELYKQHKE 242 (298)
T ss_dssp --HHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCT-------TCHH---HHHHHHHHHHHTTT
T ss_pred --HHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECC-------CcHH---HHHHHHHHHHHhcc
Confidence 35899999999999999999999988875 367789999999873 1111 13456677777775
Q ss_pred --cee-eccCCCchhhhhccCCccccc-CCCHHHHHHHHhhC
Q psy11347 257 --PFL-GSVPIDPLVTRHCDEGTSAID-TPSACVDAIQQIVQ 294 (294)
Q Consensus 257 --~~l-~~Ip~~~~~~~a~~~g~~v~~-~~s~~~~~~~~la~ 294 (294)
+++ +.||++..+.++...|+|+++ .+++++++|++|++
T Consensus 243 ~~~v~~~~Ip~~~~~~~a~~~G~~v~~~~~~~~~~~~~~la~ 284 (298)
T 2oze_A 243 DNLVFQNIIKRSNKVSTWSKNGITEHKGYDKKVLSMYKNVFF 284 (298)
T ss_dssp TCCBCSSCEECCHHHHHHHHHCCCSSSTTHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHcCCChhhhcChHHHHHHHHHHH
Confidence 555 689999999999999999997 66678899998863
No 16
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.95 E-value=3e-27 Score=197.48 Aligned_cols=185 Identities=16% Similarity=0.135 Sum_probs=143.1
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF 127 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (294)
++|+|+|+|||+||||+|.|||..|+ ..| ||+++|+|+++ ++..+++. . + ++ .++++..
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la--~~g-~VlliD~D~q~-~~~~~~~~-~-~-------l~-------~~vi~~~- 59 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLA--LQG-ETLLIDGDPNR-SATGWGKR-G-S-------LP-------FKVVDER- 59 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHH--TTS-CEEEEEECTTC-HHHHHHHH-S-C-------CS-------SEEEEGG-
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHH--hcC-CEEEEECCCCC-CHHHHhcC-C-C-------CC-------cceeCHH-
Confidence 47999999999999999999999999 889 99999999985 55555544 1 0 00 1333310
Q ss_pred ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCC-CChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHH
Q psy11347 128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPG-TSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRK 206 (294)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~-~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~ 206 (294)
.++.+. +.||+||||+||+ ........+ ..+|.+|+|+.++..++..+.+
T Consensus 60 ----------------------~l~~l~--~~yD~viiD~p~~~~~~~~~~~l-----~~aD~viiv~~~~~~~~~~~~~ 110 (209)
T 3cwq_A 60 ----------------------QAAKYA--PKYQNIVIDTQARPEDEDLEALA-----DGCDLLVIPSTPDALALDALML 110 (209)
T ss_dssp ----------------------GHHHHG--GGCSEEEEEEECCCSSSHHHHHH-----HTSSEEEEEECSSHHHHHHHHH
T ss_pred ----------------------HHHHhh--hcCCEEEEeCCCCcCcHHHHHHH-----HHCCEEEEEecCCchhHHHHHH
Confidence 334444 3399999999999 665444433 4799999999999999999999
Q ss_pred HHHHHHhc-CCCeeEEEeccccccCCCCCCCC-ccCCCCchhHHHHHhhcCCcee-eccCCCchhhhhccCCccccc---
Q psy11347 207 EIDFCRKV-NIPIIGVVENMATFVCPKCTKPS-EIFPKDSGGAEKMCAELSVPFL-GSVPIDPLVTRHCDEGTSAID--- 280 (294)
Q Consensus 207 ~l~~l~~~-~~~~~~vvvN~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~g~~~l-~~Ip~~~~~~~a~~~g~~v~~--- 280 (294)
+++.+++. +.+ .++|+|+++.+ . .. ...+.+.++.+|.+++ +.||+++.+.++...|+|+++
T Consensus 111 ~~~~l~~~~~~~-~~vv~N~~~~~-------~~~~----~~~~~~~l~~~g~~v~~~~Ip~~~~~~~a~~~g~~v~~~~~ 178 (209)
T 3cwq_A 111 TIETLQKLGNNR-FRILLTIIPPY-------PSKD----GDEARQLLTTAGLPLFKRGIKRYSAFQKASLNGVVVSEVSD 178 (209)
T ss_dssp HHHHHHHTCSSS-EEEEECSBCCT-------TSCH----HHHHHHHHHHTTCCBCSSCCBCCTHHHHHHHHTSCTTTSSS
T ss_pred HHHHHHhccCCC-EEEEEEecCCc-------cchH----HHHHHHHHHHcCCchhhccCCCcHHHHHHHHcCCCHHHhCC
Confidence 99999885 455 88999999731 1 11 2234455556899988 799999999999999999987
Q ss_pred CCC-HHHHHHHHhhC
Q psy11347 281 TPS-ACVDAIQQIVQ 294 (294)
Q Consensus 281 ~~s-~~~~~~~~la~ 294 (294)
|++ +++++|++|++
T Consensus 179 p~~~~~~~~~~~l~~ 193 (209)
T 3cwq_A 179 SKAGIAWSDYKATGK 193 (209)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHH
Confidence 678 99999999873
No 17
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.95 E-value=5.3e-27 Score=211.63 Aligned_cols=238 Identities=14% Similarity=0.122 Sum_probs=140.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccc--------------------c---c
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLN--------------------E---Q 103 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~--------------------~---~ 103 (294)
|++|+|+|+||||||||+|.|||..|+ ..|+||++||+|++++....+++... . .
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA--~~G~rVLlID~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d 78 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFA--LQGKRVLYVDCDPQCNATQLMLTEEQTESIYLDGLNDEVAERNSLAKTVYA 78 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHH--HTTCCEEEEECCTTCTTHHHHSCHHHHHHHCCC----CGGGGGHHHHSGGG
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHH--hCCCcEEEEEcCCCCChhhhhcCchhhhhhhcccccccccccccccCCHHH
Confidence 689999999999999999999999999 89999999999999876666655321 1 1
Q ss_pred ccc----ccCCCCc---cee--ccCeEEEecccccCCCCcceeec------C----ccchHHHHHHHHhhccCCCccEEE
Q psy11347 104 VHQ----SASGWSP---VFL--EENLSVMSIGFLLNSPDDAVIWR------G----PKKNTMIRQFLSEVDWGNGLEYLL 164 (294)
Q Consensus 104 ~~~----~~~~~~~---~~~--~~~l~~~~~~~~~~~~~~~~~~~------~----~~~~~~l~~~l~~l~~~~~yd~Ii 164 (294)
+.. ....+.+ ... .++++++|++..+......+... . ......++++++.++....|||||
T Consensus 79 ~l~~~~~~~~~~~~~~~~~~~~~~~L~llp~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~yD~VI 158 (361)
T 3pg5_A 79 IFVPLREGESQIAAEITPMRSERFGVDVLPGHPALSQIEDLMSDSWQSALGRQTGPFRRIHWAGQLAHAMERDDRYDVIF 158 (361)
T ss_dssp GGHHHHTTCSSCCCCCCCBCCTTTTSEEECCCGGGGTHHHHHHHHHHHHHTTCHHHHTTTTHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHhcCCCChhhcceeeccCCCCEEEEeCCchHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHhhccCCCEEE
Confidence 111 1122222 121 35999999987665544322110 0 011135788888886312499999
Q ss_pred EcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhc--------------------C---------
Q psy11347 165 IDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKV--------------------N--------- 215 (294)
Q Consensus 165 iD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~--------------------~--------- 215 (294)
||+||+++......+ ..+|.+|+|+.++..++..+.++++.+++. +
T Consensus 159 ID~pP~l~~~~~~aL-----~~aD~viip~~~~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (361)
T 3pg5_A 159 FDVGPSLGPFNRTVL-----LGCDAFVTPTATDLFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKTRPLR 233 (361)
T ss_dssp EECCSCCSHHHHHHH-----TTCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHTSSSC
T ss_pred EECCCCcCHHHHHHH-----HHCCEEEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccccccccccc
Confidence 999999985444433 679999999999999999999888888644 1
Q ss_pred --------CCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhc-----------CCceeeccCCCchh-hhhccCC
Q psy11347 216 --------IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAEL-----------SVPFLGSVPIDPLV-TRHCDEG 275 (294)
Q Consensus 216 --------~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------g~~~l~~Ip~~~~~-~~a~~~g 275 (294)
.+++|+|+|+++.+.... ...+.+.+....+++.+.. .-..++.||....+ ..|...|
T Consensus 234 ~~g~~~~~l~~lG~v~n~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~~~s~~~~aq~~~ 311 (361)
T 3pg5_A 234 LGGFDGEGLRYLGYTTLEYVKRRANG--QEQLVGAFERFRGRFAAEAERISNSLSKHSNSTLLGHVPHMHSMPATAQDVH 311 (361)
T ss_dssp TTSSSSSCCEEEEEEECC-------------------TTHHHHHHHHHHHHHHSCSSCCCCEEEECC-------------
T ss_pred cccccccccceeeEEEEcchhhcCCC--chhhhHHHHHHHHHHHHHHHhccccccCCCCccccccCCchhhHHHHHHHHC
Confidence 678999999998642111 0001111222223333333 33446788876555 8899999
Q ss_pred ccccc--C-----------CCHHHHHHHHhh
Q psy11347 276 TSAID--T-----------PSACVDAIQQIV 293 (294)
Q Consensus 276 ~~v~~--~-----------~s~~~~~~~~la 293 (294)
.|+++ + ...+.+.|.+||
T Consensus 312 ~Pi~~l~~~~~~~g~~~~~~~~~~~~~~~la 342 (361)
T 3pg5_A 312 APIMELSSSDRVRGAQINQRNAYAEKINSVA 342 (361)
T ss_dssp ---------------------CCHHHHHHHH
T ss_pred CCeEECchhcCCccHHHHHHHHHHHHHHHHH
Confidence 99999 4 346777777765
No 18
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.93 E-value=1.5e-26 Score=211.39 Aligned_cols=232 Identities=13% Similarity=0.067 Sum_probs=154.0
Q ss_pred cCceEEEEEecCCCchHHHHHHHHHHHHhhc----CCCCcEEEEecCCCCCChhhhccccccc----------cccc---
Q psy11347 45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKS----NESVDVGVLDLDICGPSMPRMMGLLNEQ----------VHQS--- 107 (294)
Q Consensus 45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~----~~g~~VlliD~D~~~~~l~~~lg~~~~~----------~~~~--- 107 (294)
.++++|+|+|+|||+||||+|.|||..|+.. ..|+||++||+|+++ +++.+||..... +...
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~~ 184 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS-SATMFLSHKHSIGIVNATSAQAMLQNVSR 184 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC-HHHHHHSCHHHHSSCCSCHHHHHHHCCCH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhHHhCCccccccccccHHHHHHhhccc
Confidence 4689999999999999999999999999911 259999999999964 788888875421 0000
Q ss_pred cCCCCcc---eeccCeEEEecccccCCCCcc----e--e-ecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHH
Q psy11347 108 ASGWSPV---FLEENLSVMSIGFLLNSPDDA----V--I-WRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLS 177 (294)
Q Consensus 108 ~~~~~~~---~~~~~l~~~~~~~~~~~~~~~----~--~-~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~ 177 (294)
...+.+. ...++++++|++..+...... . . .........++++++.+. ++|||||||+||+++.....
T Consensus 185 ~~~~~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~--~~yD~ViiD~pp~~~~~~~~ 262 (398)
T 3ez2_A 185 EELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLK--SDYDFILVDSGPHLDAFLKN 262 (398)
T ss_dssp HHHHHHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHT--TTCSEEEEEECSCCSHHHHH
T ss_pred cccHHHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhh--ccCCEEEEeCCCCccHHHHH
Confidence 0001111 123799999987543110000 0 0 001112235567788876 44999999999999876555
Q ss_pred HHHHhhcCCCcEEEEecCCchhhHHHHHH-------HHHHHHhcC--CCeeEEEeccccccCCCCCCCCccCCCCchhHH
Q psy11347 178 LVQYLKGLPDIGAIVVTTPQEVSLLDVRK-------EIDFCRKVN--IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAE 248 (294)
Q Consensus 178 ~~~~l~~~~ad~vliv~~~~~~s~~~~~~-------~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~ 248 (294)
.+ ..+|.+|+|+.++..++..+.+ +++.+++.+ .+..++|.|+.... . ... .....+
T Consensus 263 ~l-----~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~-----~-~~~---~~~~~~ 328 (398)
T 3ez2_A 263 AL-----ASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLS-----N-KAD---HKYCHS 328 (398)
T ss_dssp HH-----HHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEEC-----S-CHH---HHHHHH
T ss_pred HH-----HHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCC-----C-chh---HHHHHH
Confidence 44 4689999999998886654443 444444443 44556666554421 1 100 123456
Q ss_pred HHHhhcCCcee-eccCCCchhhhhccCCccccc--CCC---------HHHHHHHHhh
Q psy11347 249 KMCAELSVPFL-GSVPIDPLVTRHCDEGTSAID--TPS---------ACVDAIQQIV 293 (294)
Q Consensus 249 ~~~~~~g~~~l-~~Ip~~~~~~~a~~~g~~v~~--~~s---------~~~~~~~~la 293 (294)
++.+.+|.+++ +.||+++.+.++...|+|+++ |++ .+.+.+.+|+
T Consensus 329 ~l~~~~g~~vl~~~IP~~~~i~~a~~~G~~v~~~~p~s~~~~~~~~~~a~~~~~~l~ 385 (398)
T 3ez2_A 329 LAKEVFGGDMLDVFLPRLDGFERCGESFDTVISANPATYVGSADALKNARIAAEDFA 385 (398)
T ss_dssp HHHHHHGGGBCSCCEECCHHHHHHHHTTCCTTTSCTTTCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccceeccchHHHHHHHhcCCCceeeccccccCcHHHHHHHHHHHHHHH
Confidence 67777898888 799999999999999999998 542 4555666554
No 19
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.93 E-value=3e-26 Score=209.82 Aligned_cols=231 Identities=15% Similarity=0.112 Sum_probs=120.5
Q ss_pred ccCceEEEEEecCCCchHHHHHHHHHHHHhhc----CCCCcEEEEecCCCCCChhhhccccccc----------ccccc-
Q psy11347 44 SNVKHKVLVLSGKGGVGKSTFTNLLARVLAKS----NESVDVGVLDLDICGPSMPRMMGLLNEQ----------VHQSA- 108 (294)
Q Consensus 44 ~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~----~~g~~VlliD~D~~~~~l~~~lg~~~~~----------~~~~~- 108 (294)
..++++|+|+|+|||+||||+|.|||..|+.. ..|+||++||+|+++ +++.+||..... +....
T Consensus 108 ~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~ 186 (403)
T 3ez9_A 108 HKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQA-SSTMFLDHTHSIGSILETAAQAMLNNLD 186 (403)
T ss_dssp SCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSS-GGGSCC----------CCHHHHHHHTCC
T ss_pred CCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhhhhCCCcccCcccccHHHHHHhccc
Confidence 34689999999999999999999999999810 258999999999976 788888876531 00000
Q ss_pred --CCCCcc---eeccCeEEEecccccCCCCcc----e--ee-cCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHH
Q psy11347 109 --SGWSPV---FLEENLSVMSIGFLLNSPDDA----V--IW-RGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHL 176 (294)
Q Consensus 109 --~~~~~~---~~~~~l~~~~~~~~~~~~~~~----~--~~-~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~ 176 (294)
..+... ...++++++|++......... . .. ........++.+++.+. ++|||||||+||+++....
T Consensus 187 ~~~~~~~~i~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~--~~yD~VIID~pP~~~~~~~ 264 (403)
T 3ez9_A 187 AETLRKEVIRPTIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVA--DDYDFIFIDTGPHLDPFLL 264 (403)
T ss_dssp HHHHHHTTSEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGSG--GGCSEEEEEECSSCSHHHH
T ss_pred ccccHHHHHhhcccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHh--hcCCEEEEECCCCccHHHH
Confidence 001111 123889999987542110000 0 00 01111224456777776 3499999999999986555
Q ss_pred HHHHHhhcCCCcEEEEecCCchhhHHHHH-------HHHHHHHhcC--CCeeEE--EeccccccCCCCCCCCccCCCCch
Q psy11347 177 SLVQYLKGLPDIGAIVVTTPQEVSLLDVR-------KEIDFCRKVN--IPIIGV--VENMATFVCPKCTKPSEIFPKDSG 245 (294)
Q Consensus 177 ~~~~~l~~~~ad~vliv~~~~~~s~~~~~-------~~l~~l~~~~--~~~~~v--vvN~~~~~~~~~~~~~~i~~~~~~ 245 (294)
..+ ..+|.+|+|+.++..++..+. ++++.+++.+ .++.++ ++|+++. . .. ...
T Consensus 265 ~al-----~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~-------~-~~---~~~ 328 (403)
T 3ez9_A 265 NGL-----AASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG-------K-RD---HET 328 (403)
T ss_dssp HHH-----HHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC----------C-HH---HHH
T ss_pred HHH-----HHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC-------c-hh---HHH
Confidence 444 468999999999887665544 3444445444 444444 4555431 0 00 122
Q ss_pred hHHHHHhhcCCcee-eccCCCchhhhhccCCccccc--CC---------CHHHHHHHHhh
Q psy11347 246 GAEKMCAELSVPFL-GSVPIDPLVTRHCDEGTSAID--TP---------SACVDAIQQIV 293 (294)
Q Consensus 246 ~~~~~~~~~g~~~l-~~Ip~~~~~~~a~~~g~~v~~--~~---------s~~~~~~~~la 293 (294)
..+.+.+.+|.+++ +.||+++.+.++...|+|+++ |+ ..+.+.+++|+
T Consensus 329 ~~~~~~~~~g~~vl~~~IP~~~~v~~a~~~G~~v~~~~p~s~~~~~~~~~~~~~~~~~la 388 (403)
T 3ez9_A 329 SHSLAREVYASNILDSSLPRLDGFERCGESFDTVISANPQSYPGSAEALKKARTEAERFT 388 (403)
T ss_dssp HHHHHHHHHTTSEECCC-----------------------------CTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhHhhhceeCCchHHHHHHHhcCCCceecCCcccccchHHHHHHHHHHHHHH
Confidence 34556667899999 899999999999999999998 54 34556666654
No 20
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.93 E-value=3.4e-25 Score=193.35 Aligned_cols=180 Identities=16% Similarity=0.221 Sum_probs=140.6
Q ss_pred ChHHHHhhhc-----cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----cc
Q psy11347 35 GIELVKSHLS-----NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VH 105 (294)
Q Consensus 35 ~~~~i~~~~~-----~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~ 105 (294)
..+.||..+. ..+++|+|+|+|||+||||+|.|||..|+ ..|+||++||+|++.++++.+|+..... +.
T Consensus 75 a~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA--~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l 152 (286)
T 3la6_A 75 AIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVIS--QTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEIL 152 (286)
T ss_dssp HHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHH--TTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHH
T ss_pred HHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHH--hCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHc
Confidence 3455554443 34689999999999999999999999999 8999999999999999999999987652 22
Q ss_pred cccCCCCccee---ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHh
Q psy11347 106 QSASGWSPVFL---EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYL 182 (294)
Q Consensus 106 ~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l 182 (294)
.....+.+... .++++++|.+....++.+.+ ....+.++++.++ +.||+||||+||.........+
T Consensus 153 ~~~~~~~~~i~~~~~~~l~vl~~g~~~~~~~ell------~~~~l~~ll~~l~--~~yD~VIIDtpp~~~~~da~~l--- 221 (286)
T 3la6_A 153 IGQGDITTAAKPTSIAKFDLIPRGQVPPNPSELL------MSERFAELVNWAS--KNYDLVLIDTPPILAVTDAAIV--- 221 (286)
T ss_dssp HTSSCTTTTCEECSSTTEEEECCCSCCSCHHHHH------TSHHHHHHHHHHH--HHCSEEEEECCCTTTCTHHHHH---
T ss_pred cCCCCHHHheeccCCCCEEEEeCCCCCCCHHHHh------chHHHHHHHHHHH--hCCCEEEEcCCCCcchHHHHHH---
Confidence 22334444332 37899999987655443322 2347888888887 3399999999998754222222
Q ss_pred hcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 183 KGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 183 ~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
...+|.+|+|+.++..++..+.+.++.+++.+.+..|+|+|+++.
T Consensus 222 -~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~ 266 (286)
T 3la6_A 222 -GRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFR 266 (286)
T ss_dssp -TTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECC
T ss_pred -HHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccc
Confidence 157999999999999999999999999999999999999999974
No 21
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.91 E-value=1.2e-24 Score=188.71 Aligned_cols=180 Identities=19% Similarity=0.277 Sum_probs=136.5
Q ss_pred ChHHHHhhhc-----cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----cc
Q psy11347 35 GIELVKSHLS-----NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VH 105 (294)
Q Consensus 35 ~~~~i~~~~~-----~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~ 105 (294)
..+.||..+. ..+++|+|+|.|||+||||+|.|||..|+ ..|+||++||+|++.++++.+|+..... +.
T Consensus 65 a~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA--~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L 142 (271)
T 3bfv_A 65 KFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYA--QAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLL 142 (271)
T ss_dssp HHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHH
T ss_pred HHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHH--hCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHh
Confidence 3445555443 35789999999999999999999999999 8999999999999999999999876542 11
Q ss_pred cccCCCCccee---ccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHh
Q psy11347 106 QSASGWSPVFL---EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYL 182 (294)
Q Consensus 106 ~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l 182 (294)
.....+.+... .++++++|++....++.+.+ ....+.++++.++ +.||+||||+||.........+.
T Consensus 143 ~~~~~l~~~i~~~~~~~l~vl~~g~~~~~~~ell------~~~~l~~ll~~l~--~~yD~VIIDtpp~~~~~d~~~l~-- 212 (271)
T 3bfv_A 143 LNWSTYQDSIISTEIEDLDVLTSGPIPPNPSELI------TSRAFANLYDTLL--MNYNFVIIDTPPVNTVTDAQLFS-- 212 (271)
T ss_dssp TTSSCHHHHEEECSSTTEEEECCCSCCSCHHHHH------TSHHHHHHHHHHH--HHCSEEEEECCCTTTCSHHHHHH--
T ss_pred CCCCCHHHcEEeCCCCCEEEEECCCCCCCHHHHh------ChHHHHHHHHHHH--hCCCEEEEeCCCCchHHHHHHHH--
Confidence 11222222222 27999999886654433221 1246788888887 33999999999976532222221
Q ss_pred hcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 183 KGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 183 ~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
..+|.+|+|+.++..++..+.+.++.+++.+.+..|+|+|+++.
T Consensus 213 --~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 213 --KFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPK 256 (271)
T ss_dssp --HHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC
T ss_pred --HHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcC
Confidence 35899999999999999999999999999999999999999973
No 22
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.91 E-value=7.8e-25 Score=198.33 Aligned_cols=197 Identities=19% Similarity=0.180 Sum_probs=137.4
Q ss_pred cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccc----ccc--------CCCC
Q psy11347 45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVH----QSA--------SGWS 112 (294)
Q Consensus 45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~----~~~--------~~~~ 112 (294)
..+++|+|+|+|||+||||+|.|||..|+ ..|+||+++|+| ..++++.+||.++.... ... ..+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La--~~g~rVlliD~D-~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~ 217 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHA--NMGKKVFYLNIE-QCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLE 217 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHH--HHTCCEEEEECC-TTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHH--hCCCCEEEEECC-CCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHH
Confidence 35899999999999999999999999999 789999999999 67799999998766211 110 0122
Q ss_pred cce--eccCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEE
Q psy11347 113 PVF--LEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGA 190 (294)
Q Consensus 113 ~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~v 190 (294)
+.. ...+++++|.+........ .....+..+++.+.....||+||||+|++.+......+ ..+|.+
T Consensus 218 ~~i~~~~~~l~~l~~~~~~~~~~~-------~~~~~~~~ll~~l~~~~~yD~VIID~p~~~~~~~~~~l-----~~aD~v 285 (373)
T 3fkq_A 218 SCIKQSQEGVSYFSSTKVALDILE-------ISYADIDTLIGNIQGMDNYDEIIVDLPFSLEIEKLKLL-----SKAWRI 285 (373)
T ss_dssp HTCEECTTSCEECCCCSSGGGGGG-------CCHHHHHHHHHHHHHTSCCSEEEEECCCCCCHHHHHHH-----TTCSEE
T ss_pred HHhhcCCCCEEEecCCCChHhHHh-------CCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCHHHHHHH-----HHCCEE
Confidence 221 2378999987754332221 13345666666665223499999999999987665555 689999
Q ss_pred EEecCCchhh---HHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCch
Q psy11347 191 IVVTTPQEVS---LLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPL 267 (294)
Q Consensus 191 liv~~~~~~s---~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~ 267 (294)
++|++++..+ +..+.+.++.+... . .+++|.|++.. .++.....+++++..++++++.||+|+.
T Consensus 286 ivv~~~~~~s~~~l~~~~~~l~~l~~~-~-~~~vv~N~~~v-----------~~~~~~~~~~fl~~~~l~~lG~IP~D~~ 352 (373)
T 3fkq_A 286 IVVNDGSQLSNYKFMRAYESVVLLEQN-D-DINIIRNMNMI-----------YNKFSNKNSEMLSNISIKTIGGAPRYEH 352 (373)
T ss_dssp EEEECCCHHHHHHHHHHHHHHHHHTTS-T-TCCCGGGEEEE-----------ECSCCTTTCCCCCSCSCEEEEECCCCTT
T ss_pred EEEecCCchHHHHHHHHHHHHHHhccc-C-CcEEEehhHHH-----------HHHHHHHHHHHhhcCCccceeecCCCCC
Confidence 9999999988 45555555555442 2 25666666532 2222233445555679999999999987
Q ss_pred hh
Q psy11347 268 VT 269 (294)
Q Consensus 268 ~~ 269 (294)
..
T Consensus 353 ~~ 354 (373)
T 3fkq_A 353 AT 354 (373)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 23
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.90 E-value=3.4e-24 Score=188.37 Aligned_cols=170 Identities=17% Similarity=0.231 Sum_probs=132.1
Q ss_pred cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccc----cccccCCCCccee---c
Q psy11347 45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ----VHQSASGWSPVFL---E 117 (294)
Q Consensus 45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~----~~~~~~~~~~~~~---~ 117 (294)
..+++|+|+|.|||+||||+|.|||..|+ ..|+||++||+|++.++++.+|+..... +......+++... .
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA--~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~ 179 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIA--QSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGK 179 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHH--HTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETT
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHH--hCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCC
Confidence 34789999999999999999999999999 8899999999999989999999877642 1112222332222 2
Q ss_pred cCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc
Q psy11347 118 ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ 197 (294)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~ 197 (294)
++++++|++....++.+.+ ....+.++++.++ +.||+||||+||.+.......+ ...+|.+|+|+.++
T Consensus 180 ~~l~vl~~g~~~~~~~ell------~~~~l~~ll~~l~--~~yD~VIIDtpp~~~~~d~~~l----~~~ad~vilV~~~~ 247 (299)
T 3cio_A 180 GGFDVITRGQVPPNPSELL------MRDRMRQLLEWAN--DHYDLVIVDTPPMLAVSDAAVV----GRSVGTSLLVARFG 247 (299)
T ss_dssp TTEEEECCCSCCSCHHHHH------TSHHHHHHHHHHH--HHCSEEEEECCCTTTCTHHHHH----GGGCSEEEEEEETT
T ss_pred CCEEEEECCCCCCCHHHHh------CHHHHHHHHHHHH--hCCCEEEEcCCCCchhHHHHHH----HHHCCEEEEEEcCC
Confidence 7999999886654433221 1346788888887 3399999999998753211122 14699999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 198 EVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 198 ~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
..++..+.+.++.+++.+.+..|+|+|+++.
T Consensus 248 ~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~ 278 (299)
T 3cio_A 248 LNTAKEVSLSMQRLEQAGVNIKGAILNGVIK 278 (299)
T ss_dssp TSCTTHHHHHHHHHHHTTCCCCCEEEEECCC
T ss_pred CChHHHHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 9999999999999999999999999999974
No 24
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.90 E-value=1.8e-23 Score=185.91 Aligned_cols=213 Identities=19% Similarity=0.253 Sum_probs=131.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccccccccc-CCC-----Ccc------
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA-SGW-----SPV------ 114 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~-~~~-----~~~------ 114 (294)
|++|+|+++|||+||||+|+|||..++ ..|+||+++|+|+ .++++.+|+.+........ ..+ +..
T Consensus 13 m~~i~v~sgKGGvGKTTvA~~LA~~lA--~~G~rVLlvD~D~-~~~l~~~l~~~~~~~~~~v~~~l~~~~~d~~~~~~~~ 89 (324)
T 3zq6_A 13 KTTFVFIGGKGGVGKTTISAATALWMA--RSGKKTLVISTDP-AHSLSDSLEREIGHTPTKITENLYAVEIDPEVAMEEY 89 (324)
T ss_dssp BCEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEECCS-SCCHHHHHTSCCCSSCEEEETTEEEEECCHHHHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHH--HCCCcEEEEeCCC-CcCHHHHhCCcCCCCCccCCCCceeeccChHHHHHHH
Confidence 589999999999999999999999999 8899999999999 6799999987643211110 000 000
Q ss_pred ---eeccCeEEEecccccCCCC--cceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH-H------------
Q psy11347 115 ---FLEENLSVMSIGFLLNSPD--DAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH-L------------ 176 (294)
Q Consensus 115 ---~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~-~------------ 176 (294)
.......+++.+....... .....+.......+..+.+.+...+ ||+||||+||....-. +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~~~~-yD~VIiDtpPt~~~l~lL~~p~~~~~~~~~ 168 (324)
T 3zq6_A 90 QAKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDE-YDIVIFDTAPTGHTLRLLSFPEIMDSWVGK 168 (324)
T ss_dssp HHHC---------------------CTTSTTHHHHHHHHHHHHHHHHCC-CSEEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchhhhHHHHHHhccCCChHHHHHHHHHHHHHHhCC-CCEEEECCCCCHHHHHHHHhHHHHHHHHHH
Confidence 0000001222221100000 0000111111223334444433334 9999999998431100 0
Q ss_pred -------------------------------------------HHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHh
Q psy11347 177 -------------------------------------------SLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRK 213 (294)
Q Consensus 177 -------------------------------------------~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~ 213 (294)
.....+.....+.+++|+.++..++..+.+.++.+++
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~~~~~~~~~~~~~l~~ 248 (324)
T 3zq6_A 169 MIKIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEK 248 (324)
T ss_dssp HHHHHHHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcccHHHHHHHHHHHHHH
Confidence 0111222223468999999999999999999999999
Q ss_pred cCCCeeEEEecccccc---CCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCc
Q psy11347 214 VNIPIIGVVENMATFV---CPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDP 266 (294)
Q Consensus 214 ~~~~~~~vvvN~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~ 266 (294)
.+++..|+|+|++.+. |+.|..+..++ ....+++.+.++...+..||..+
T Consensus 249 ~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~---~~~l~~i~~~~~~~~~~~iPl~~ 301 (324)
T 3zq6_A 249 YSIHADGVIVNQVLPEESDCEFCNARRKLQ---QERLKQIREKFSDKVVAEVPLLK 301 (324)
T ss_dssp TTCCEEEEEEEEECCSCCCSHHHHHHHHHH---HHHHHHHHHHTTTSEEEEEECCS
T ss_pred CCCCccEEEEcCCccccCCChHHHHHHHHH---HHHHHHHHHHcCCCcEEEecCCC
Confidence 9999999999999865 33333333333 34567777788888888888754
No 25
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.89 E-value=5.9e-23 Score=184.22 Aligned_cols=211 Identities=22% Similarity=0.329 Sum_probs=137.1
Q ss_pred cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEe
Q psy11347 45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMS 124 (294)
Q Consensus 45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (294)
..+++|+|+++|||+||||+|+|||..++ ..|+||+++|+|+ .++++.+|+.+....+....+. ++++...
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA--~~G~rVLlvD~D~-~~~l~~~l~~~~~~~~~~v~g~------~~l~~~~ 93 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLA--EKGLKVVIVSTDP-AHSLRDIFEQEFGHEPTKVKGY------DNLYVVE 93 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHH--HSSCCEEEEECCT-TCHHHHHHCSCCCSSCEECTTC------SSEEEEE
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHH--HCCCeEEEEeCCC-CCCHHHHhCCCCCcCccccccc------cceeeec
Confidence 45899999999999999999999999999 8899999999999 5699999988654222111111 1121111
Q ss_pred cccc-------------c-------CCCCcce----eecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh-------
Q psy11347 125 IGFL-------------L-------NSPDDAV----IWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD------- 173 (294)
Q Consensus 125 ~~~~-------------~-------~~~~~~~----~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~------- 173 (294)
.... . ......+ ..........+..+.+.+. .++||+||||+||....
T Consensus 94 id~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~pg~~e~~~~~~l~~~~~-~~~yD~VIiDtpPt~~tlrlL~~p 172 (349)
T 3ug7_A 94 IDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMD-SNEFDVVIFDTAPTGHTLRFLGMP 172 (349)
T ss_dssp CCHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHH-CCSCSEEEECSCCCTTGGGGGGHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhccCCCHHHHHHHHHHHHHHH-hCCCCEEEECCCCChHHHHHHhhH
Confidence 0000 0 0000000 0001111112333444333 23499999999995421
Q ss_pred HHH---------------------------------------------------HHHHHhhcCCCcEEEEecCCchhhHH
Q psy11347 174 EHL---------------------------------------------------SLVQYLKGLPDIGAIVVTTPQEVSLL 202 (294)
Q Consensus 174 ~~~---------------------------------------------------~~~~~l~~~~ad~vliv~~~~~~s~~ 202 (294)
..+ .....+.....+.+++|+.++..++.
T Consensus 173 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~p~~~~~~ 252 (349)
T 3ug7_A 173 EVMDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSIL 252 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCccHHH
Confidence 000 00112222335889999999999999
Q ss_pred HHHHHHHHHHhcCCCeeEEEecccccc---CCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCchh
Q psy11347 203 DVRKEIDFCRKVNIPIIGVVENMATFV---CPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLV 268 (294)
Q Consensus 203 ~~~~~l~~l~~~~~~~~~vvvN~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~~ 268 (294)
.+.+.++.+++.+++..|+|+|++.+. |+.|..+..++ ....+++.+.++.+.++.||.++.-
T Consensus 253 e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~---~~~l~~i~~~~~~~~l~~iPl~~~e 318 (349)
T 3ug7_A 253 ESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQ---LKRLEMIKEKFGDKVIAYVPLLRTE 318 (349)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHH---HHHHHHHHHHSTTSEEEEEECCSSC
T ss_pred HHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHH---HHHHHHHHHHcCCCcEEEecCCCCC
Confidence 999999999999999999999998865 33333333333 4567788888999999999987543
No 26
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=99.87 E-value=2e-22 Score=180.93 Aligned_cols=182 Identities=17% Similarity=0.231 Sum_probs=116.8
Q ss_pred hhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcc-------
Q psy11347 42 HLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPV------- 114 (294)
Q Consensus 42 ~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~------- 114 (294)
.+.+..++|+|+|+||||||||+|+|||..|++...|+||++||+|+. ++++.+||.+....+....++..+
T Consensus 12 l~~~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~-~~l~~~lg~~~~~~~~~v~gl~~l~~~~id~ 90 (354)
T 2woj_A 12 LITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA-HNLSDAFGEKFGKDARKVTGMNNLSCMEIDP 90 (354)
T ss_dssp HHTCSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS-CCHHHHHTSCCCSSCEECTTCSSEEEEECCH
T ss_pred HhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC-CCHHHHhCCCCCCCceeecCCCceEEEecCH
Confidence 334557899999999999999999999999992147999999999995 899999998753211111100000
Q ss_pred -----------ee--c--------cCeEEEecccccCCCCcc-eeecCccchHHHHHHHHhhccC-----CCccEEEEcC
Q psy11347 115 -----------FL--E--------ENLSVMSIGFLLNSPDDA-VIWRGPKKNTMIRQFLSEVDWG-----NGLEYLLIDT 167 (294)
Q Consensus 115 -----------~~--~--------~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~l~~~-----~~yd~IiiD~ 167 (294)
.. . .+++.++.+... .+. ...++......+.++++.+... ..||+||||+
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~~---~el~~~~pg~~e~~~l~~l~~~l~~~~~~~~~~yD~IIiDt 167 (354)
T 2woj_A 91 SAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGAL---ADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDT 167 (354)
T ss_dssp HHHHHHHHTC--------------------CCSSHH---HHHHTTSTTHHHHHHHHHHHHHHHHHHHTSCCSCSEEEEEC
T ss_pred HHHHHHHHHHHHhhcccccccchhhhhhhccchhHH---HHHhcCCCChHHHHHHHHHHHHHhcccccccCCCCEEEECC
Confidence 00 0 034444321100 000 0011112224677777776632 1499999999
Q ss_pred CC-CCC---------------------hHHH--------------------------HHHHHhhcCCCcEEEEecCCchh
Q psy11347 168 PP-GTS---------------------DEHL--------------------------SLVQYLKGLPDIGAIVVTTPQEV 199 (294)
Q Consensus 168 p~-~~~---------------------~~~~--------------------------~~~~~l~~~~ad~vliv~~~~~~ 199 (294)
|| +.. .... .....+....+|.+++|+.++..
T Consensus 168 pPtG~tLrlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~pe~~ 247 (354)
T 2woj_A 168 APTGHTLRFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGAGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFL 247 (354)
T ss_dssp CCHHHHHHHHTHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHH
T ss_pred CCchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCcc
Confidence 99 320 0000 01111211268999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347 200 SLLDVRKEIDFCRKVNIPIIGVVENMAT 227 (294)
Q Consensus 200 s~~~~~~~l~~l~~~~~~~~~vvvN~~~ 227 (294)
++..+.++++.++..+++..++|+|++.
T Consensus 248 si~ea~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 248 SLYETERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred hHHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence 9999999999999999999999999987
No 27
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.85 E-value=1.1e-21 Score=174.43 Aligned_cols=178 Identities=21% Similarity=0.202 Sum_probs=113.1
Q ss_pred HHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceecc
Q psy11347 39 VKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEE 118 (294)
Q Consensus 39 i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~ 118 (294)
|+..+.+.+++|.|+++|||+||||+|+|||..++ ..|+||+++|+|++ +++..+|+............. +
T Consensus 7 l~~~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la--~~g~~vllid~D~~-~~l~~~l~~~~~~~~~~v~~~------~ 77 (334)
T 3iqw_A 7 LQSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA--KVRRSVLLLSTDPA-HNLSDAFSQKFGKEARLVEGF------D 77 (334)
T ss_dssp SHHHHHCTTCCEEEEECSTTSSHHHHHHHHHHHHT--TSSSCEEEEECCSS-CHHHHHHTSCCCSSCEECTTC------S
T ss_pred HHHHhcCCCeEEEEEeCCCCccHHHHHHHHHHHHH--hCCCcEEEEECCCC-CChhHHhccccCCCceeecCC------C
Confidence 34455666778889999999999999999999999 89999999999985 588888876543211111000 0
Q ss_pred CeEEEecc--------------------cccCCCCcce--eecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH--
Q psy11347 119 NLSVMSIG--------------------FLLNSPDDAV--IWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE-- 174 (294)
Q Consensus 119 ~l~~~~~~--------------------~~~~~~~~~~--~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~-- 174 (294)
+++.+... ..+ +..... ...+......+.++.+.+...+ ||+||||+||....-
T Consensus 78 ~L~~~~id~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~Pg~~e~~~~~~~~~~~~~~~-yD~VIiDtpPtg~tLrl 155 (334)
T 3iqw_A 78 NLYAMEIDPNGSMQDLLAGQTGDGDAGMGGV-GVMQDLAYAIPGIDEAMSFAEVLKQVNSLS-YETIVFDTAPTGHTLRF 155 (334)
T ss_dssp SEEEEECCC---------------------------------CCHHHHHHHHHHHHHHHTSS-CSEEEEECCCHHHHHHH
T ss_pred CceeeecCHHHHHHHHHHHhhcccccccccc-hhhHHhhcCCCCHHHHHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHH
Confidence 11110000 000 000000 0112222223444444444334 999999999821100
Q ss_pred ------------------------------------------------------HHHHHHHhhcCCCcEEEEecCCchhh
Q psy11347 175 ------------------------------------------------------HLSLVQYLKGLPDIGAIVVTTPQEVS 200 (294)
Q Consensus 175 ------------------------------------------------------~~~~~~~l~~~~ad~vliv~~~~~~s 200 (294)
.......+.....+.+++|+.++..+
T Consensus 156 L~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~ 235 (334)
T 3iqw_A 156 LQFPTVLEKALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLS 235 (334)
T ss_dssp HTHHHHC-----------------------------------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEEECCCccH
Confidence 00111122223457899999999999
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347 201 LLDVRKEIDFCRKVNIPIIGVVENMAT 227 (294)
Q Consensus 201 ~~~~~~~l~~l~~~~~~~~~vvvN~~~ 227 (294)
+..+.+.++.+++.+++..++|+|++.
T Consensus 236 ~~ea~r~~~~L~~~gi~v~gvVvN~~~ 262 (334)
T 3iqw_A 236 LYETERMIQELANYGIDTHCIVVNQLL 262 (334)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCCccEEEECCCc
Confidence 999999999999999999999999986
No 28
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=99.85 E-value=1.6e-21 Score=173.51 Aligned_cols=176 Identities=18% Similarity=0.206 Sum_probs=112.6
Q ss_pred ccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCccee---c---
Q psy11347 44 SNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFL---E--- 117 (294)
Q Consensus 44 ~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~---~--- 117 (294)
.+..++|+|+|+|||+||||+|+|||..|+ ..|+||+++|+|++ ++++.+|+.+...-.....+...+.. .
T Consensus 15 ~~~~~~i~v~sgkGGvGKTTva~~LA~~lA--~~G~rVllvD~D~~-~~l~~~l~~~~~~~~~~~~g~~~l~~~~~~~~~ 91 (329)
T 2woo_A 15 EQTSLKWIFVGGKGGVGKTTTSCSLAIQMS--KVRSSVLLISTDPA-HNLSDAFGTKFGKDARKVPGFDNLSAMEIDPNL 91 (329)
T ss_dssp HCTTCCEEEEECSSSSSHHHHHHHHHHHHH--TSSSCEEEEECCTT-CHHHHHHSSCCCSSCEECTTCSSEEEEECCHHH
T ss_pred cCCCCEEEEEeCCCCCcHHHHHHHHHHHHH--HCCCeEEEEECCCC-cCHHHHhCCcCCCCCeeccCCCCeeEEecCHHH
Confidence 345688999999999999999999999999 89999999999998 78999998763211100001111000 0
Q ss_pred ------cC-----eE-EEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh-------HH---
Q psy11347 118 ------EN-----LS-VMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD-------EH--- 175 (294)
Q Consensus 118 ------~~-----l~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~-------~~--- 175 (294)
.. ++ +++.... .. ............+..+.+.+.+.+ ||+||||+||.... ..
T Consensus 92 ~~~~~~~~~~~~~l~~~l~~~l~--~l--~~~~pg~~e~~~~~~~~~~l~~~~-yD~ViiDtpPtg~~l~lL~~p~~~~~ 166 (329)
T 2woo_A 92 SIQEMTEQADQQNPNNPLSGMMQ--DL--AFTIPGIDEALAFAEILKQIKSME-FDCVIFDTAPTGHTLRFLNFPTVLEK 166 (329)
T ss_dssp HHHHHHHTC--------CCHHHH--HH--HTTSTTHHHHHHHHHHHHHHHHTC-CSEEEEECCSSSCTTTGGGHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHhhHHHH--HH--hcCCCCHHHHHHHHHHHHHHHhCC-CCEEEECCCCchHHHHHHHHHHHHHH
Confidence 00 11 1110000 00 000111122224555666555434 99999999993221 00
Q ss_pred ---------------HHHH----------------------------HHhhcCCCcEEEEecCCchhhHHHHHHHHHHHH
Q psy11347 176 ---------------LSLV----------------------------QYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCR 212 (294)
Q Consensus 176 ---------------~~~~----------------------------~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~ 212 (294)
...+ ..+.....+.+++|+.++..++..+.+.++.++
T Consensus 167 ~l~~l~~~~~~~~~~~~~l~~~~g~~~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlV~~pe~~~i~ea~~~~~~L~ 246 (329)
T 2woo_A 167 ALGKLGGLSSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQELT 246 (329)
T ss_dssp HHHHHHTSCSSCHHHHHHHHHHHC-----CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcchHHHHHHHHHHHH
Confidence 0110 011111245799999999999999999999999
Q ss_pred hcCCCeeEEEecccc
Q psy11347 213 KVNIPIIGVVENMAT 227 (294)
Q Consensus 213 ~~~~~~~~vvvN~~~ 227 (294)
+.+++..++|+|++.
T Consensus 247 ~~gi~v~gvVvN~~~ 261 (329)
T 2woo_A 247 SYEIDTHNIVVNQLL 261 (329)
T ss_dssp HHTCEEEEEEEEEEC
T ss_pred HCCCCCCEEEEeCCc
Confidence 999999999999987
No 29
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=99.82 E-value=1.9e-20 Score=167.24 Aligned_cols=189 Identities=17% Similarity=0.151 Sum_probs=104.5
Q ss_pred HHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccC--------C
Q psy11347 39 VKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSAS--------G 110 (294)
Q Consensus 39 i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~--------~ 110 (294)
|+..+....+.|+|+++|||+||||+|++||..++....|+||+++|+|+ .++++.+||........... .
T Consensus 9 L~~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~-~~~l~~~~~~~~~~~~~~v~~~~~L~~~~ 87 (348)
T 3io3_A 9 LESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP-AHNLSDAFCQKFGKDARKVEGLPNLSCME 87 (348)
T ss_dssp SHHHHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS-SCHHHHHHTSCCCSSCEEETTEEEEEEEE
T ss_pred HHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC-CCChHHHhccccCCCceeccCCCCceEEe
Confidence 34445566678889999999999999999999999214799999999997 56888888865331110000 0
Q ss_pred CCcce-eccCeEEEe-----cccccCCCCcc--eeecCccchHHHHHHHHhhccC-----------CCccEEEEcCCCCC
Q psy11347 111 WSPVF-LEENLSVMS-----IGFLLNSPDDA--VIWRGPKKNTMIRQFLSEVDWG-----------NGLEYLLIDTPPGT 171 (294)
Q Consensus 111 ~~~~~-~~~~l~~~~-----~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~l~~~-----------~~yd~IiiD~p~~~ 171 (294)
++... ..+....+. .+..+...... ...++......+.++++.+... +.||+||||+||..
T Consensus 88 id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~yD~VIiDtpPtg 167 (348)
T 3io3_A 88 IDPEAAMSDLQQQASQYNNDPNDPLKSMMSDMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTG 167 (348)
T ss_dssp CCC-----------------------------------------------------------------CCEEEEECSSHH
T ss_pred eCHHHHHHHHHHHHHhhcccccccHhHHhHHhhcCCCCHHHHHHHHHHHHHHHhccccccccccccCCCCEEEEcCCCch
Confidence 00000 000000000 00000000000 0001111112344555544421 14999999999822
Q ss_pred Ch-----------HHH-------------------------------------HHHHHhhcCCCcEEEEecCCchhhHHH
Q psy11347 172 SD-----------EHL-------------------------------------SLVQYLKGLPDIGAIVVTTPQEVSLLD 203 (294)
Q Consensus 172 ~~-----------~~~-------------------------------------~~~~~l~~~~ad~vliv~~~~~~s~~~ 203 (294)
.. +.+ .....+.....+.+++|+.++..++..
T Consensus 168 ~tLrlL~lP~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~e 247 (348)
T 3io3_A 168 HTLRFLQLPSTLEKLLSKFKDLSGKLGPMLSMMGGGQQQDIFEKLNEVQKNVSEVNEQFTNPELTTFICVCISEFLSLYE 247 (348)
T ss_dssp HHHHHTC---------------------------------------------CHHHHHHTCTTTEEEEEEEESSHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHhCcCceEEEEEecCCccHHHH
Confidence 10 000 011222223357899999999999999
Q ss_pred HHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 204 VRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 204 ~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.++.+++.+++..++|+||+.+
T Consensus 248 a~r~~~~L~~~gi~v~gvVvN~~~~ 272 (348)
T 3io3_A 248 TERMIQELMSYNMDVNSIVVNQLLF 272 (348)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEEECC
T ss_pred HHHHHHHHHHCCCCccEEEEcCCcc
Confidence 9999999999999999999999875
No 30
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.82 E-value=1e-19 Score=152.98 Aligned_cols=197 Identities=14% Similarity=0.147 Sum_probs=121.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhh-ccccccc--cccccCCCCcceeccCeEEE
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRM-MGLLNEQ--VHQSASGWSPVFLEENLSVM 123 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~-lg~~~~~--~~~~~~~~~~~~~~~~l~~~ 123 (294)
.++|+|+|.|||+||||+|.|||.+|+ .+|+||+++| ++..+.... .+..... ...................+
T Consensus 1 ~k~I~v~s~kgGvGKTt~a~nLa~~la--~~G~rVll~d--p~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 76 (224)
T 1byi_A 1 SKRYFVTGTDTEVGKTVASCALLQAAK--AAGYRTAGYK--PVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTF 76 (224)
T ss_dssp CEEEEEEESSTTSCHHHHHHHHHHHHH--HTTCCEEEEC--SEEESCBCCTTSCBCHHHHHHHHTCSSCCCHHHHCSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH--HCCCCEEEEc--ceecCCccCCCCcChHHHHHHHHHhCCCCChhhcccEEe
Confidence 368999999999999999999999999 8999999976 332211100 0000000 00001111100000011122
Q ss_pred --ecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH------HHHHHHHhhcCCCcEEEEecC
Q psy11347 124 --SIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE------HLSLVQYLKGLPDIGAIVVTT 195 (294)
Q Consensus 124 --~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~------~~~~~~~l~~~~ad~vliv~~ 195 (294)
|....+. .... ........+.+.++.+. ++|||||||+||++... ....+.. ..+.+|+|+.
T Consensus 77 ~~~~~~~~~---~~~~-~~~~~~~~l~~~l~~l~--~~yD~viID~p~~l~~p~~~~~~~~~l~~~----~~~~vi~v~~ 146 (224)
T 1byi_A 77 AEPTSPHII---SAQE-GRPIESLVMSAGLRALE--QQADWVLVEGAGGWFTPLSDTFTFADWVTQ----EQLPVILVVG 146 (224)
T ss_dssp SSCSCHHHH---HHHH-TCCCCHHHHHHHHHHHH--TTCSEEEEECSSSTTCEEETTEEHHHHHHH----HTCCEEEEEE
T ss_pred CCCCCHHHH---HHHc-CCCCCHHHHHHHHHHHH--HhCCEEEEEcCCccccCCCcchhHHHHHHH----hCCCEEEEec
Confidence 1110000 0000 01123457888888886 34999999999887532 1222211 1234888888
Q ss_pred CchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCch
Q psy11347 196 PQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPL 267 (294)
Q Consensus 196 ~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~ 267 (294)
+...++..+...++.++..+.+..|+|+|+++. +... ..+..+.+.+.++.++++.||+++.
T Consensus 147 ~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~-------~~~~---~~~~~~~l~~~~~~~vl~~Ip~~~~ 208 (224)
T 1byi_A 147 VKLGCINHAMLTAQVIQHAGLTLAGWVANDVTP-------PGKR---HAEYMTTLTRMIPAPLLGEIPWLAE 208 (224)
T ss_dssp CSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSS-------CCTT---HHHHHHHHHHHSSSCEEEEECCCTT
T ss_pred CCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCC-------chhh---HHHHHHHHHHHcCCCEEEECCCCcC
Confidence 889999999999999998899999999999873 1111 2345566777789999999999974
No 31
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.76 E-value=1.8e-19 Score=172.47 Aligned_cols=186 Identities=18% Similarity=0.253 Sum_probs=112.3
Q ss_pred CcChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCC
Q psy11347 33 DPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWS 112 (294)
Q Consensus 33 ~~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~ 112 (294)
.+..+.+...+..+.+++.|+++|||+||||+|.|||..++ ..|++|+++|+|++ +++...|+......... .++
T Consensus 312 ~~~l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~--~~g~~vllvD~Dp~-~~l~~~l~~~~~~l~~~--~~~ 386 (589)
T 1ihu_A 312 IPSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLA--DMGFDVHLTTSDPA-AHLSMTLNGSLNNLQVS--RID 386 (589)
T ss_dssp CCCHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESCCC------------CCEEEE--ECC
T ss_pred cchhhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHHH--HCCCcEEEEeCCCc-ccHhHHhcccCCCceee--ecc
Confidence 35666667777778899999999999999999999999999 89999999999997 56777776632211000 000
Q ss_pred c----------ceec--cCeEEEecccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH------
Q psy11347 113 P----------VFLE--ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE------ 174 (294)
Q Consensus 113 ~----------~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~------ 174 (294)
. +... .++. ... ..................+..+.+.+.+.+ ||+||||+||+....
T Consensus 387 ~~~~~~~~~~~v~~~~~~~l~--~~~--~~~~~~~~~~p~~~e~~~~~~l~~~~~~~~-~D~vviD~~p~~~tl~ll~~p 461 (589)
T 1ihu_A 387 PHEETERYRQHVLETKGKELD--EAG--KRLLEEDLRSPCTEEIAVFQAFSRVIREAG-KRFVVMDTAPTGHTLLLLDAT 461 (589)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC--HHH--HHHHHHHTTSHHHHHHHHHHHHTTTGGGGG-TSEEEESCCCCHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhhhccCC--hhh--HHHHHHHhcCCChHHHHHHHHHHHHHhccC-CCEEEEcCCCCccHHHHHHhH
Confidence 0 0000 0111 000 000000000000001113444444443334 999999999973210
Q ss_pred ----------------HHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 175 ----------------HLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 175 ----------------~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
....+..+....+|.+++|+.++..++..+.++++.+++.+++..++|+|++.+
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~ 531 (589)
T 1ihu_A 462 GAYHREIAKKMGEKGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLS 531 (589)
T ss_dssp ------------------CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEEST
T ss_pred HHHHHHHHHhcccchHHHHHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 111122222235799999999999999999999999999999999999999874
No 32
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=99.75 E-value=1.5e-17 Score=149.51 Aligned_cols=166 Identities=18% Similarity=0.207 Sum_probs=105.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEec-
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSI- 125 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~- 125 (294)
|.+|.++++|||+||||+|.+||..++ ..|+||+++|+ + .+++..+||......... ..++++.+..
T Consensus 1 M~~i~~~~gkGG~GKTt~a~~la~~la--~~g~~vllvd~-~-~~~l~~~~~~~~~~~~~~--------v~~~L~~~eid 68 (374)
T 3igf_A 1 MALILTFLGKSGVARTKIAIAAAKLLA--SQGKRVLLAGL-A-EPVLPLLLEQTLTPDPQQ--------IAPNLEVVQFQ 68 (374)
T ss_dssp -CEEEEEECSBHHHHHHHHHHHHHHHH--HTTCCEEEEEC-S-CSHHHHHHTSCCCSSCEE--------EETTEEEEECC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH--HCCCCeEEEeC-C-CCChHHhhCCCCCCCccc--------ccccccccccC
Confidence 356788899999999999999999999 89999999999 5 568888888764321111 0112221100
Q ss_pred -----------------------ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh---------
Q psy11347 126 -----------------------GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD--------- 173 (294)
Q Consensus 126 -----------------------~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~--------- 173 (294)
+.......+.....+......+..+.+.+...+ ||+||+|+||....
T Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~el~~~Pg~~E~~~l~~~~~~~~~~~-yD~VIvDtpPtg~tLrlL~lP~~ 147 (374)
T 3igf_A 69 SSVLLERNWEEVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDASGK-YDTIVYDGTGDAFTLRMLGLPES 147 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCSSSSSCGGGCCCCTTHHHHHHHHHHHHHHHTTC-CSEEEEECCCSHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccchhhhccCCCHHHHHHHHHHHHHHhccC-CCEEEEeCCCChHHhhhhhhhHH
Confidence 000000111111111112223344444444334 99999999983210
Q ss_pred --HHH---------------------------------------------------HHHHHhhcCCCcEEEEecCCchhh
Q psy11347 174 --EHL---------------------------------------------------SLVQYLKGLPDIGAIVVTTPQEVS 200 (294)
Q Consensus 174 --~~~---------------------------------------------------~~~~~l~~~~ad~vliv~~~~~~s 200 (294)
+.+ .....+.....+.+++|++|+..+
T Consensus 148 l~~~l~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~s 227 (374)
T 3igf_A 148 LSWYVRRFRQLFVNSDLGKTIAESPLIQPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPLE 227 (374)
T ss_dssp HHHHHHHTTSCC-----------------------------------CHHHHHHHHHHHHHHHCTTTEEEEEEECSCHHH
T ss_pred HHHHHHHHHHHHhhhccccccccchhhhhhhhhhccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEECCCccH
Confidence 000 011222223446799999999999
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEecc
Q psy11347 201 LLDVRKEIDFCRKVNIPIIGVVENM 225 (294)
Q Consensus 201 ~~~~~~~l~~l~~~~~~~~~vvvN~ 225 (294)
+..+.+.++.+.+.+++..++|+||
T Consensus 228 l~ea~r~~~~L~~~gi~v~gvVvN~ 252 (374)
T 3igf_A 228 VVSVRYLWGSAQQIGLTIGGVIQVS 252 (374)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCccEEEEcC
Confidence 9999999999999999999999999
No 33
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.72 E-value=1.8e-17 Score=158.56 Aligned_cols=171 Identities=17% Similarity=0.150 Sum_probs=111.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
+++|.|+++|||+||||+|++||..++ ..|+||++||+|+ .++++..|+.+.......... .+++......
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA--~~G~rVLlvd~D~-~~~l~~~l~~~~~~~~~~v~~------~~~l~~~~~d 77 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLA--EQGKRVLLVSTDP-ASNVGQVFSQTIGNTIQAIAS------VPGLSALEID 77 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCT-TCCHHHHTTSCCCSSCEECTT------STTEEEEECC
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHH--HCCCcEEEEECCC-CcCHHHHhCCcccCCCceecc------chhhhhccCC
Confidence 556779999999999999999999999 8899999999999 489999998865421111111 1122221110
Q ss_pred cc-------------cCCC-C--------cceee---cCccchHHHHHHHH--hhccCCCccEEEEcCCCCCCh------
Q psy11347 127 FL-------------LNSP-D--------DAVIW---RGPKKNTMIRQFLS--EVDWGNGLEYLLIDTPPGTSD------ 173 (294)
Q Consensus 127 ~~-------------~~~~-~--------~~~~~---~~~~~~~~l~~~l~--~l~~~~~yd~IiiD~p~~~~~------ 173 (294)
.. ..+. . ..+.. ..-.....+..+++ .+. ++||+||||+||....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~--~~yD~VIiDt~P~~~~lrll~l 155 (589)
T 1ihu_A 78 PQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLL--TRFDHIIFDTAPTGHTIRLLQL 155 (589)
T ss_dssp HHHHHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHH--HHCSEEEESSCCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhc--ccCCEEEECCCCchhHHHHHHh
Confidence 00 0000 0 00000 00001224556666 333 3399999999985321
Q ss_pred -----------------------------HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEec
Q psy11347 174 -----------------------------EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVEN 224 (294)
Q Consensus 174 -----------------------------~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN 224 (294)
.+......+.....+.+++|+.++..++..+.++++.+++.+++..++|+|
T Consensus 156 P~~~~~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN 235 (589)
T 1ihu_A 156 PGAWSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVIN 235 (589)
T ss_dssp GGGGTCCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred HHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEc
Confidence 001122223223345799999999999999999999999999999999999
Q ss_pred cccc
Q psy11347 225 MATF 228 (294)
Q Consensus 225 ~~~~ 228 (294)
++.+
T Consensus 236 ~v~~ 239 (589)
T 1ihu_A 236 GVLP 239 (589)
T ss_dssp EECC
T ss_pred CCcC
Confidence 9874
No 34
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.61 E-value=2.7e-15 Score=126.40 Aligned_cols=194 Identities=15% Similarity=0.112 Sum_probs=118.9
Q ss_pred cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe---cCCCCCChhhhccccccccccccCCCCcceeccCeE
Q psy11347 45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD---LDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLS 121 (294)
Q Consensus 45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD---~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~ 121 (294)
..|+.|.|.+..+|+||||++.+|+.+|+ ++|++|.++. ..+...+ . +....+..........-...-+..
T Consensus 2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~--~~G~~V~~~KPv~~g~~~~~-~---~~~~~D~~~~~~~~~~~~~~~~~~ 75 (228)
T 3of5_A 2 NAMKKFFIIGTDTEVGKTYISTKLIEVCE--HQNIKSLCLKPVASGQSQFS-E---LCEDVESILNAYKHKFTAAEINLI 75 (228)
T ss_dssp TTCEEEEEEESSSSSCHHHHHHHHHHHHH--HTTCCEEEECSEEESBCSSS-S---SBHHHHHHHHHTTTSSCHHHHCSE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHH--HCCCeeEEecceeecCccCC-C---CCChHHHHHHhcCCCCChhhEEEE
Confidence 34789999999999999999999999999 8999999975 1111100 0 000001000111111000001122
Q ss_pred EEec--ccccCCCCcceeecCccchHHHHHHHHh-hccCCCccEEEEcCCCCCChH------HHHHHHHhhcCCCcEEEE
Q psy11347 122 VMSI--GFLLNSPDDAVIWRGPKKNTMIRQFLSE-VDWGNGLEYLLIDTPPGTSDE------HLSLVQYLKGLPDIGAIV 192 (294)
Q Consensus 122 ~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~-l~~~~~yd~IiiD~p~~~~~~------~~~~~~~l~~~~ad~vli 192 (294)
.+.. ...... .. .........+.+.++. +. ++||++|||+++++... ....+..+ ..-+|+
T Consensus 76 ~~~~p~sp~~aa---~~-~~~~i~~~~i~~~~~~~l~--~~~D~vlIEgaggl~~p~~~~~~~adla~~l----~~pviL 145 (228)
T 3of5_A 76 SFNQAVAPHIIA---AK-TKVDISIENLKQFIEDKYN--QDLDILFIEGAGGLLTPYSDHTTQLDLIKAL----QIPVLL 145 (228)
T ss_dssp EESSSSCHHHHH---HH-TTCCCCHHHHHHHHHGGGG--SSCSEEEEEEEEETTCBSSSSCBHHHHHHHH----TCCEEE
T ss_pred EECCCCCHHHHH---HH-cCCCCCHHHHHHHHHHHHH--ccCCEEEEECCCccccccccchhHHHHHHHc----CCCEEE
Confidence 2211 000000 00 0011233467778887 66 34999999999765321 22333322 233899
Q ss_pred ecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCC
Q psy11347 193 VTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPI 264 (294)
Q Consensus 193 v~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~ 264 (294)
|+.....++..+...++.+...+.++.|+|+|+++.. .. ......+.+.+.+|++++++||.
T Consensus 146 V~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~-------~~---~~~~~~~~l~~~~g~pvLG~iP~ 207 (228)
T 3of5_A 146 VSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSN-------IK---YIDEQINTIEELSGYKCSAKISR 207 (228)
T ss_dssp EEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTT-------CS---CHHHHHHHHHHHHSCCCSEEEES
T ss_pred EEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCc-------ch---hhHHHHHHHHHhhCCCEEEECCC
Confidence 9999999999999999999999999999999998731 11 12334566666689999999993
No 35
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.60 E-value=9.6e-15 Score=133.95 Aligned_cols=168 Identities=17% Similarity=0.206 Sum_probs=104.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEec
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSI 125 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (294)
+++|+|+ ++||+||||++.+||.+|+ .. |++|+++|+|++.+.....+.. .....++++++.
T Consensus 100 ~~vI~iv-G~~GvGKTT~a~~LA~~l~--~~~G~kVllvd~D~~r~~a~~ql~~--------------~~~~~~l~v~~~ 162 (433)
T 2xxa_A 100 PAVVLMA-GLQGAGKTTSVGKLGKFLR--EKHKKKVLVVSADVYRPAAIKQLET--------------LAEQVGVDFFPS 162 (433)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHHHHHH--HTSCCCEEEEECCCSSTTHHHHHHH--------------HHHHHTCEECCC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHH--HhcCCeEEEEecCCCCccHHHHHHh--------------hcccCCeeEEeC
Confidence 5677777 6999999999999999999 77 9999999999987654332210 112356777665
Q ss_pred ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh--HHHHHHHHhh-cCCCcEEEEecCCchhhHH
Q psy11347 126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD--EHLSLVQYLK-GLPDIGAIVVTTPQEVSLL 202 (294)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~--~~~~~~~~l~-~~~ad~vliv~~~~~~s~~ 202 (294)
+... .....+.+.+..+...+ ||+||||+||.... .....+..+. ....+.+++|+++... .
T Consensus 163 ~~~~------------dp~~i~~~~l~~~~~~~-~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g--~ 227 (433)
T 2xxa_A 163 DVGQ------------KPVDIVNAALKEAKLKF-YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG--Q 227 (433)
T ss_dssp CSSS------------CHHHHHHHHHHHHHHTT-CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBC--T
T ss_pred CCCC------------CHHHHHHHHHHHHHhCC-CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchh--H
Confidence 4311 11224466777765334 99999999986642 2222221110 1367888888876532 2
Q ss_pred HHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 203 DVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 203 ~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
.+...++.+.. ++++.++|+|+++.. . ....+..+.+.++.|+.
T Consensus 228 ~~~~~~~~f~~-~l~i~gvVlnK~D~~-------~-----~~g~~l~i~~~~~~Pi~ 271 (433)
T 2xxa_A 228 DAANTAKAFNE-ALPLTGVVLTKVDGD-------A-----RGGAALSIRHITGKPIK 271 (433)
T ss_dssp THHHHHHHHHH-HSCCCCEEEECTTSS-------S-----CCTHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHhc-cCCCeEEEEecCCCC-------c-----cHHHHHHHHHHHCCCeE
Confidence 33344444432 356679999999832 1 11244566666676543
No 36
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=99.58 E-value=9.1e-15 Score=123.87 Aligned_cols=208 Identities=10% Similarity=0.031 Sum_probs=124.5
Q ss_pred HhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccc--cccccc---cccC-CCCc
Q psy11347 40 KSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGL--LNEQVH---QSAS-GWSP 113 (294)
Q Consensus 40 ~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~--~~~~~~---~~~~-~~~~ 113 (294)
|+.+.+|++.|.|+++.+|+|||+++..|+.+|+ .+|++|.++.- .+.+....-+. +...+. .... ....
T Consensus 14 ~~~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~--~~G~~V~~fKP--v~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~ 89 (242)
T 3qxc_A 14 RENLYFQGHMLFISATNTNAGKTTCARLLAQYCN--ACGVKTILLKP--IETGVNDAINHSSDAHLFLQDNRLLDRSLTL 89 (242)
T ss_dssp -----CCCEEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEECC--EECSCCTTTCCCSHHHHHHHHHHTTCTTCCH
T ss_pred hhHHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHH--hCCCceEEEee--eecCCcccCCCCchHHHHHHHHHHHhCCCCh
Confidence 5678889999999999999999999999999999 89999999852 11000000000 000110 0111 1111
Q ss_pred ceeccCeEEE--ecccccCCCCcceeecC--ccchHHHHHHHHhhccCCCccEEEEcCCCCCChH------HHHHHHHhh
Q psy11347 114 VFLEENLSVM--SIGFLLNSPDDAVIWRG--PKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE------HLSLVQYLK 183 (294)
Q Consensus 114 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~------~~~~~~~l~ 183 (294)
.... ...+ |..+.... .. ... ....+.+.+.++.+. ..||+||||+++++... ...++..+
T Consensus 90 -~~~~-p~~~~~p~sp~~aa---~~-~g~~~~i~~~~I~~~~~~l~--~~~D~vlIEGagGl~~pl~~~~~~adlA~~l- 160 (242)
T 3qxc_A 90 -KDIS-FYRYHKVSAPLIAQ---QE-EDPNAPIDTDNLTQRLHNFT--KTYDLVIVEGAGGLCVPITLEENMLDFALKL- 160 (242)
T ss_dssp -HHHC-CEECSSSSCHHHHH---HH-HCTTCCCCHHHHHHHHHHGG--GTCSEEEEECCSCTTCBSSSSCBHHHHHHHH-
T ss_pred -HHee-eEEECCCCChHHHH---HH-cCCCCcCCHHHHHHHHHHHH--hcCCEEEEECCCCccccccccchHHHHHHHc-
Confidence 0001 1111 11110000 00 000 223456788888876 34999999999776421 12333333
Q ss_pred cCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhh----cCCcee
Q psy11347 184 GLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAE----LSVPFL 259 (294)
Q Consensus 184 ~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~g~~~l 259 (294)
.+ -||+|+.....++..+...++.++..+++ .|+|+|+++. ...+. +....++++ ...+++
T Consensus 161 --~~-pVILV~~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~-------~~~~~----~~~~p~le~~~~~~~~~~~ 225 (242)
T 3qxc_A 161 --KA-KMLLISHDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGN-------NTAFH----SISLPYIELFNTRSNNPIV 225 (242)
T ss_dssp --TC-EEEEEECCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTT-------CCHHH----HHTHHHHHHHHHHCSSCCE
T ss_pred --CC-CEEEEEcCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCC-------ccchh----hhhHHHHHHhcCcccCCce
Confidence 33 38999999999999999999999999999 9999999873 22222 333444444 446888
Q ss_pred eccCCCchhhhhccCC
Q psy11347 260 GSVPIDPLVTRHCDEG 275 (294)
Q Consensus 260 ~~Ip~~~~~~~a~~~g 275 (294)
.++|+-+.+.+++..|
T Consensus 226 ~~~~~~~~l~~~~~~~ 241 (242)
T 3qxc_A 226 IFQQSLKVLMSFALKG 241 (242)
T ss_dssp EGGGCHHHHHHHHHSC
T ss_pred eccccHHHHHHHHhcC
Confidence 8888877777766555
No 37
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.57 E-value=4.2e-14 Score=123.64 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=105.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
+.+++++ |++|+||||++.+||..++ ..|++|+++|+|++.+.....+... ....++++++..
T Consensus 98 ~~vi~i~-G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~~r~~a~~ql~~~--------------~~~~~v~v~~~~ 160 (297)
T 1j8m_F 98 PYVIMLV-GVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADVYRPAALEQLQQL--------------GQQIGVPVYGEP 160 (297)
T ss_dssp SEEEEEE-CSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCCSSSHHHHHHHHH--------------HHHHTCCEECCT
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCCCHHHHHHHHHH--------------hccCCeEEEecC
Confidence 4556665 7999999999999999999 8899999999999876543332210 112355555532
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hH--HHHHH---HHhhcCCCcEEEEecCCchh
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DE--HLSLV---QYLKGLPDIGAIVVTTPQEV 199 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~--~~~~~---~~l~~~~ad~vliv~~~~~~ 199 (294)
. .......+.+.++.+++.+ ||+||||+||... .. ....+ ... ..+|.+++|+++...
T Consensus 161 ~------------~~~p~~~~~~~l~~~~~~~-~D~ViIDTpg~~~~~~~~~l~~el~~i~~~--~~~d~vllVvda~~g 225 (297)
T 1j8m_F 161 G------------EKDVVGIAKRGVEKFLSEK-MEIIIVDTAGRHGYGEEAALLEEMKNIYEA--IKPDEVTLVIDASIG 225 (297)
T ss_dssp T------------CCCHHHHHHHHHHHHHHTT-CSEEEEECCCSCCTTCHHHHHHHHHHHHHH--HCCSEEEEEEEGGGG
T ss_pred C------------CCCHHHHHHHHHHHHHhCC-CCEEEEeCCCCcccccHHHHHHHHHHHHHH--hcCCEEEEEeeCCch
Confidence 1 0111224566777765334 9999999998776 31 11111 112 368889999877642
Q ss_pred hHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 200 SLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 200 s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+...++.+.. ..+..++|+|+++.. .....+..+...++.|+.
T Consensus 226 --~~~~~~~~~~~~-~~~i~gvVlnk~D~~------------~~~g~~~~~~~~~~~pi~ 270 (297)
T 1j8m_F 226 --QKAYDLASKFNQ-ASKIGTIIITKMDGT------------AKGGGALSAVAATGATIK 270 (297)
T ss_dssp --GGHHHHHHHHHH-TCTTEEEEEECGGGC------------TTHHHHHHHHHTTTCCEE
T ss_pred --HHHHHHHHHHHh-hCCCCEEEEeCCCCC------------cchHHHHHHHHHHCcCEE
Confidence 334444444444 467789999999842 112345566777787776
No 38
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=99.54 E-value=9.3e-14 Score=118.31 Aligned_cols=200 Identities=14% Similarity=0.113 Sum_probs=119.1
Q ss_pred HHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceecc
Q psy11347 39 VKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEE 118 (294)
Q Consensus 39 i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~ 118 (294)
++....+.|+.|.|.+...|+|||+++..|+.+|+ .+|++|.++.-=..+.. .. +.+...+ ......... .
T Consensus 18 ~~~~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~--~~G~~V~~fKPv~~g~~-~~--~~D~~~~-~~~~g~~~~---~ 88 (251)
T 3fgn_A 18 ENLYFQSHMTILVVTGTGTGVGKTVVCAALASAAR--QAGIDVAVCKPVQTGTA-RG--DDDLAEV-GRLAGVTQL---A 88 (251)
T ss_dssp ----CCSSCEEEEEEESSTTSCHHHHHHHHHHHHH--HTTCCEEEEEEEECCGG-GT--CCHHHHH-HHHHCCCEE---E
T ss_pred HHHhcccCCCEEEEEeCCCCCcHHHHHHHHHHHHH--HCCCeEEEEeeeecCCC-CC--CHHHHHH-HHHcCCCCC---C
Confidence 44444456899999999999999999999999999 89999999862100000 00 0000000 111111110 1
Q ss_pred CeEEEe--cccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh-------HHHHHHHHhhcCCCcE
Q psy11347 119 NLSVMS--IGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD-------EHLSLVQYLKGLPDIG 189 (294)
Q Consensus 119 ~l~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~-------~~~~~~~~l~~~~ad~ 189 (294)
+...+. ..+... ....-......+.+.+.++.+. ..||+||||+++++.. ....++.. ...-
T Consensus 89 ~~~~~~~p~sP~~a---a~~~~~~~~~~~~i~~~~~~l~--~~~D~vlIEGagGl~~pl~~~~~~~adla~~----l~~p 159 (251)
T 3fgn_A 89 GLARYPQPMAPAAA---AEHAGMALPARDQIVRLIADLD--RPGRLTLVEGAGGLLVELAEPGVTLRDVAVD----VAAA 159 (251)
T ss_dssp EEEECSSSSCHHHH---HHHTTCCCCCHHHHHHHHHTTC--CTTCEEEEECSSSTTCEEETTTEEHHHHHHH----TTCE
T ss_pred CCeeECCCCChHHH---HHHcCCCCCCHHHHHHHHHHHH--hcCCEEEEECCCCCcCCcCcccchHHHHHHH----cCCC
Confidence 111110 000000 0000000123446788888876 4499999999987632 11223222 3455
Q ss_pred EEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCCch
Q psy11347 190 AIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPL 267 (294)
Q Consensus 190 vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~~~ 267 (294)
||+|++.+..++..+...++.+...+.++.|+|+|+++. ...+. .....+.+++. +|++|+||++..
T Consensus 160 VILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~~-------~~~~~---~~~~~~~le~~-vpvLG~iP~~~~ 226 (251)
T 3fgn_A 160 ALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWPD-------PPGLV---AASNRSALARI-AMVRAALPAGAA 226 (251)
T ss_dssp EEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEECS-------SCCHH---HHHHHHHHHHH-SCEEEEEETTGG
T ss_pred EEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCCC-------chhhh---hhhHHHHHHHh-CCEEEEeeCCCC
Confidence 899999999999999999999999999999999999852 11111 11223444555 999999999854
No 39
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.52 E-value=1.8e-13 Score=119.64 Aligned_cols=169 Identities=14% Similarity=0.100 Sum_probs=104.2
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEec
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSI 125 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (294)
.+++++++ +++|+||||++.+||..++ ..|++|+++|+|++.+.....++. .....++++++.
T Consensus 97 ~~~~i~i~-g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~~~~ql~~--------------~~~~~~l~~~~~ 159 (295)
T 1ls1_A 97 DRNLWFLV-GLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPAAREQLRL--------------LGEKVGVPVLEV 159 (295)
T ss_dssp SSEEEEEE-CCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHHHHHHHHH--------------HHHHHTCCEEEC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHhHHHHHHH--------------hcccCCeEEEEc
Confidence 36677777 8999999999999999999 789999999999986543322211 011245667765
Q ss_pred ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH--HHHHHHHh-hcCCCcEEEEecCCchhhHH
Q psy11347 126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE--HLSLVQYL-KGLPDIGAIVVTTPQEVSLL 202 (294)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~--~~~~~~~l-~~~~ad~vliv~~~~~~s~~ 202 (294)
+... ......+..+..+...+ ||+||+|+||....+ .+..+..+ ....+|.+++|++... . .
T Consensus 160 ~~~~------------~p~~l~~~~l~~~~~~~-~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~-~-~ 224 (295)
T 1ls1_A 160 MDGE------------SPESIRRRVEEKARLEA-RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT-G-Q 224 (295)
T ss_dssp CTTC------------CHHHHHHHHHHHHHHHT-CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-T-H
T ss_pred CCCC------------CHHHHHHHHHHHHHhCC-CCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC-c-H
Confidence 4210 01113455666653224 999999999876432 12211111 0024777888887653 2 3
Q ss_pred HHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 203 DVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 203 ~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
.+...++.+.. ..+..++|+|+++.. . ....+-.+.+..|+|+.
T Consensus 225 ~~~~~~~~~~~-~~~i~givlnk~d~~-------~-----~~g~~~~~~~~~~~pi~ 268 (295)
T 1ls1_A 225 EALSVARAFDE-KVGVTGLVLTKLDGD-------A-----RGGAALSARHVTGKPIY 268 (295)
T ss_dssp HHHHHHHHHHH-HTCCCEEEEECGGGC-------S-----SCHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHhh-cCCCCEEEEECCCCC-------c-----cHHHHHHHHHHHCcCEE
Confidence 33333444432 356789999999842 1 12345566677888877
No 40
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.51 E-value=2e-13 Score=120.60 Aligned_cols=172 Identities=14% Similarity=0.174 Sum_probs=101.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
+++|+++|. +|+||||++.+||..++ ..|++|+++|+|++.+.....+. .|.......++.++|.+
T Consensus 105 ~~vI~ivG~-~G~GKTT~~~~LA~~l~--~~g~kVllid~D~~r~~a~~ql~-----------~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 105 LNIFMLVGV-NGTGKTTSLAKMANYYA--ELGYKVLIAAADTFRAGATQQLE-----------EWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp CEEEEEESS-TTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSCHHHHHHHH-----------HHHTTTSCTTEEEECCS
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHH-----------HHHhccccCCceEEeCC
Confidence 567888865 99999999999999999 78999999999987543211110 01001124578888654
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH--HHHHHHH---hh----cCCCcEEEEecCCc
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE--HLSLVQY---LK----GLPDIGAIVVTTPQ 197 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~--~~~~~~~---l~----~~~ad~vliv~~~~ 197 (294)
.....+. ......+...+. ++||+||||+||..... .+..+.. +. ...+|.+++|+...
T Consensus 171 ~~~~~p~----------~~~~~~l~~~~~--~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~ 238 (320)
T 1zu4_A 171 KLNADPA----------SVVFDAIKKAKE--QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDAT 238 (320)
T ss_dssp STTCCHH----------HHHHHHHHHHHH--TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGG
T ss_pred CCCCCHH----------HHHHHHHHHHHh--cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECC
Confidence 3211110 112223333333 34999999999987642 1111111 11 12478888888766
Q ss_pred hhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 198 EVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 198 ~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
. ..+.+... +.+. ...+..|+|+|+++.. . ....+..+...+++|+.
T Consensus 239 ~-~~~~l~~~-~~~~-~~~~i~GvVltk~d~~-------~-----~~g~~~~~~~~~~~Pi~ 285 (320)
T 1zu4_A 239 T-GQNGVIQA-EEFS-KVADVSGIILTKMDST-------S-----KGGIGLAIKELLNIPIK 285 (320)
T ss_dssp G-THHHHHHH-HHHT-TTSCCCEEEEECGGGC-------S-----CTTHHHHHHHHHCCCEE
T ss_pred C-cHHHHHHH-HHHh-hcCCCcEEEEeCCCCC-------C-----chhHHHHHHHHHCcCEE
Confidence 3 33333332 2332 2356789999999842 1 12245667777888875
No 41
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.49 E-value=2.8e-13 Score=123.52 Aligned_cols=168 Identities=15% Similarity=0.115 Sum_probs=104.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
+.+|+++ +++|+||||++.+||.+++ ..|++|+++|+|++.+.....+... ....++++++.+
T Consensus 98 ~~vi~i~-G~~GsGKTT~~~~LA~~l~--~~g~~Vllvd~D~~r~aa~~qL~~~--------------~~~~gv~v~~~~ 160 (425)
T 2ffh_A 98 RNLWFLV-GLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPAAREQLRLL--------------GEKVGVPVLEVM 160 (425)
T ss_dssp SEEEEEE-CCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCSSCHHHHHHHHHH--------------HHHHTCCEEECC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHH--HcCCeEEEeeccccCchhHHHHHHh--------------cccCCccEEecC
Confidence 5667776 7899999999999999999 8899999999999875443333210 112456677654
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH--HHHHHHHhh-cCCCcEEEEecCCchhhHHH
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE--HLSLVQYLK-GLPDIGAIVVTTPQEVSLLD 203 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~--~~~~~~~l~-~~~ad~vliv~~~~~~s~~~ 203 (294)
.. . .....+.+.++.++..+ ||+|||||||..... .+..+..+. ....|.+++|++.... ..
T Consensus 161 ~~----~--------~p~~i~~~~l~~~~~~~-~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~ 225 (425)
T 2ffh_A 161 DG----E--------SPESIRRRVEEKARLEA-RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QE 225 (425)
T ss_dssp TT----C--------CHHHHHHHHHHHHHHTT-CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--TH
T ss_pred CC----C--------CHHHHHHHHHHHHHHCC-CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HH
Confidence 31 0 01124466777663234 999999999876422 222111110 0257888888876532 34
Q ss_pred HHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 204 VRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 204 ~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
+...++.+.. .++..++|+|+++.. .....+..+.+.+|.|+.
T Consensus 226 av~~a~~f~~-~l~i~GVIlTKlD~~------------~~~g~alsi~~~~g~PI~ 268 (425)
T 2ffh_A 226 ALSVARAFDE-KVGVTGLVLTKLDGD------------ARGGAALSARHVTGKPIY 268 (425)
T ss_dssp HHHHHHHHHH-HTCCCEEEEESGGGC------------SSCHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHh-cCCceEEEEeCcCCc------------ccHHHHHHHHHHHCCCEE
Confidence 4444444432 356679999999741 112345556667777744
No 42
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.40 E-value=9.1e-12 Score=113.78 Aligned_cols=168 Identities=16% Similarity=0.166 Sum_probs=100.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
+.+|.++ |.+|+||||++.+||.+|+ ..|++|+++++|+..+.....+.... ...++.+....
T Consensus 100 p~vIliv-G~~G~GKTTt~~kLA~~l~--~~G~kVllv~~D~~R~aa~eqL~~~~--------------~~~gvpv~~~~ 162 (443)
T 3dm5_A 100 PTILLMV-GIQGSGKTTTVAKLARYFQ--KRGYKVGVVCSDTWRPGAYHQLRQLL--------------DRYHIEVFGNP 162 (443)
T ss_dssp SEEEEEE-CCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCCSSTHHHHHHHHHH--------------GGGTCEEECCT
T ss_pred CeEEEEE-CcCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHHHHH--------------HhcCCcEEecC
Confidence 4555555 5599999999999999999 89999999999998754322222110 01233333221
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh--HHHHHHHHh-hcCCCcEEEEecCCchhhHHH
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD--EHLSLVQYL-KGLPDIGAIVVTTPQEVSLLD 203 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~--~~~~~~~~l-~~~~ad~vliv~~~~~~s~~~ 203 (294)
. .......+.+.++.+...+ ||+|||||++.... .....+..+ ....+|.+++|+++... ..
T Consensus 163 ~------------~~dp~~i~~~al~~a~~~~-~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g--q~ 227 (443)
T 3dm5_A 163 Q------------EKDAIKLAKEGVDYFKSKG-VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG--QQ 227 (443)
T ss_dssp T------------CCCHHHHHHHHHHHHHHTT-CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GG
T ss_pred C------------CCCHHHHHHHHHHHHHhCC-CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc--hh
Confidence 1 0112234566677766334 99999999975532 222111111 01257889999877652 22
Q ss_pred HHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 204 VRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 204 ~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
+....+.+.+ ..+..++|+|+++.. .....+..+....+.|+.
T Consensus 228 a~~~a~~f~~-~~~i~gVIlTKlD~~------------~~gG~~ls~~~~~g~PI~ 270 (443)
T 3dm5_A 228 AYNQALAFKE-ATPIGSIIVTKLDGS------------AKGGGALSAVAATGAPIK 270 (443)
T ss_dssp HHHHHHHHHH-SCTTEEEEEECCSSC------------SSHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHh-hCCCeEEEEECCCCc------------ccccHHHHHHHHHCCCEE
Confidence 3333344442 345679999999831 122345566667787775
No 43
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.38 E-value=3.2e-13 Score=115.72 Aligned_cols=45 Identities=27% Similarity=0.465 Sum_probs=40.4
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCCh
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM 93 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l 93 (294)
+...+.++++|||+||||++.+||..++ .|++|+++|+|++.+.+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~---~g~~v~vvd~D~~~~~~ 56 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE---DNYKVAYVNLDTGVKEL 56 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT---TTSCEEEEECCSSCSCC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH---CCCeEEEEeCCCCcccc
Confidence 4678999999999999999999999998 58999999999987654
No 44
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.37 E-value=9.2e-12 Score=114.11 Aligned_cols=166 Identities=17% Similarity=0.210 Sum_probs=99.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF 127 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (294)
++|+++| .+|+||||++.+||..++ ..|++|+++|+|++.+.....+.. .....++.+.+.+.
T Consensus 100 ~vI~ivG-~~GvGKTTla~~La~~l~--~~G~kVllv~~D~~r~~a~~qL~~--------------~~~~~gv~v~~~~~ 162 (432)
T 2v3c_C 100 NVILLVG-IQGSGKTTTAAKLARYIQ--KRGLKPALIAADTYRPAAYEQLKQ--------------LAEKIHVPIYGDET 162 (432)
T ss_dssp CCEEEEC-CSSSSTTHHHHHHHHHHH--HHHCCEEEECCSCCCTTGGGSSHH--------------HHHHSSCCEECCSS
T ss_pred eEEEEEC-CCCCCHHHHHHHHHHHHH--HcCCeEEEEeccccCchHHHHHHH--------------hhhccCcceEecCC
Confidence 4677765 699999999999999999 789999999999987654322211 01123555555431
Q ss_pred ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChH--HHHHHHHhhc-CCCcEEEEecCCchhhHHHH
Q psy11347 128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE--HLSLVQYLKG-LPDIGAIVVTTPQEVSLLDV 204 (294)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~--~~~~~~~l~~-~~ad~vliv~~~~~~s~~~~ 204 (294)
...++ ...+...+..+. + ||+||||+|+..... ....+..+.. ..+|.+++|+++.... .+
T Consensus 163 ~~~dp-----------~~i~~~~l~~~~--~-~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~ 226 (432)
T 2v3c_C 163 RTKSP-----------VDIVKEGMEKFK--K-ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QA 226 (432)
T ss_dssp SCCSS-----------STTHHHHHHTTS--S-CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GH
T ss_pred CCCCH-----------HHHHHHHHHHhh--C-CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HH
Confidence 10000 012345566552 4 999999999876532 2222222211 2578888888664432 23
Q ss_pred HHHHHHHHhcCC-CeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 205 RKEIDFCRKVNI-PIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 205 ~~~l~~l~~~~~-~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
....+.+.. .. +..++|+|+++.. . ....+..+.+.++.|+.
T Consensus 227 ~~~~~~~~~-~~~~i~gvVlnK~D~~-------~-----~~g~~l~~~~~~~~pi~ 269 (432)
T 2v3c_C 227 GIQAKAFKE-AVGEIGSIIVTKLDGS-------A-----KGGGALSAVAETKAPIK 269 (432)
T ss_dssp HHHHHHHHT-TSCSCEEEEEECSSSC-------S-----TTHHHHHHHHHSSCCEE
T ss_pred HHHHHHHhh-cccCCeEEEEeCCCCc-------c-----chHHHHHHHHHHCCCEE
Confidence 333333432 35 6689999999831 0 11223446667777765
No 45
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.32 E-value=1.2e-11 Score=115.12 Aligned_cols=149 Identities=9% Similarity=0.062 Sum_probs=88.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
.++|+++ |.+|+||||++.+||.+++ ..|++|+++|+|++.+.....+.... ...++.+++..
T Consensus 101 ~~vI~iv-G~~GvGKTTl~~kLA~~l~--~~G~kVllVd~D~~r~aa~~qL~~~~--------------~~~~i~v~~~~ 163 (504)
T 2j37_W 101 QNVIMFV-GLQGSGKTTTCSKLAYYYQ--RKGWKTCLICADTFRAGAFDQLKQNA--------------TKARIPFYGSY 163 (504)
T ss_dssp -EEEEEE-CSTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSSHHHHHHHHHH--------------HHHTCCEEECC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHH--hCCCeEEEEeccccchhHHHHHHHHh--------------hccCceEEccC
Confidence 4567776 6689999999999999999 78999999999998765433322110 11234444322
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCCh--HHHHHHHHhh-cCCCcEEEEecCCchhhHHH
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSD--EHLSLVQYLK-GLPDIGAIVVTTPQEVSLLD 203 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~--~~~~~~~~l~-~~~ad~vliv~~~~~~s~~~ 203 (294)
.. . .....+.+.+..+.+.+ ||+||||||+.... .....+..+. ...+|.+++|+++.... .
T Consensus 164 ~~----~--------dp~~i~~~al~~~~~~~-~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~-~- 228 (504)
T 2j37_W 164 TE----M--------DPVIIASEGVEKFKNEN-FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ-A- 228 (504)
T ss_dssp CC----S--------CHHHHHHHHHHHHHHTT-CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT-T-
T ss_pred CC----C--------CHHHHHHHHHHHHHHCC-CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc-c-
Confidence 10 0 11123455566654334 99999999987642 2211111110 02578888888775421 1
Q ss_pred HHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 204 VRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 204 ~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
.....+.+.+. +++.++|+|+++.
T Consensus 229 ~~~~a~~~~~~-~~i~gvVlNK~D~ 252 (504)
T 2j37_W 229 CEAQAKAFKDK-VDVASVIVTKLDG 252 (504)
T ss_dssp HHHHHHHHHHH-HCCCCEEEECTTS
T ss_pred HHHHHHHHHhh-cCceEEEEeCCcc
Confidence 22333344332 4555899999983
No 46
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.24 E-value=7.6e-11 Score=107.64 Aligned_cols=168 Identities=15% Similarity=0.135 Sum_probs=96.3
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEeccc
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGF 127 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (294)
..+.++.|.+|+||||++.+||.+++ ..|++|+++|+|+..+.....+.... ...++.+.....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~--~~G~kVllv~~D~~r~~a~eqL~~~~--------------~~~gv~~~~~~~ 160 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYK--KRGYKVGLVAADVYRPAAYDQLLQLG--------------NQIGVQVYGEPN 160 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCSCHHHHHHHHHHH--------------HTTTCCEECCTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEecCccchhHHHHHHHHH--------------HhcCCceeeccc
Confidence 34555558899999999999999999 88999999999986543221111100 001222221110
Q ss_pred ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC----hHHHHHHHHhh-cCCCcEEEEecCCchhhHH
Q psy11347 128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS----DEHLSLVQYLK-GLPDIGAIVVTTPQEVSLL 202 (294)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~----~~~~~~~~~l~-~~~ad~vliv~~~~~~s~~ 202 (294)
.......+...+..+...+ ||+||||+|+... ...+..+..+. ....+.+++|++.... .
T Consensus 161 ------------~~dp~~i~~~al~~a~~~~-~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g--q 225 (433)
T 3kl4_A 161 ------------NQNPIEIAKKGVDIFVKNK-MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG--Q 225 (433)
T ss_dssp ------------CSCHHHHHHHHHHHTTTTT-CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG--G
T ss_pred ------------cCCHHHHHHHHHHHHHhcC-CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc--h
Confidence 0111224556677766444 9999999997533 22222221111 1245778888776542 2
Q ss_pred HHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 203 DVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 203 ~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
.+....+.+.+ .....++|+|+++.. .....+-.+....+.|+.
T Consensus 226 ~a~~~a~~f~~-~~~~~gVIlTKlD~~------------a~~G~als~~~~~g~Pi~ 269 (433)
T 3kl4_A 226 KAYDLASRFHQ-ASPIGSVIITKMDGT------------AKGGGALSAVVATGATIK 269 (433)
T ss_dssp GGHHHHHHHHH-HCSSEEEEEECGGGC------------SCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHhc-ccCCcEEEEeccccc------------ccchHHHHHHHHHCCCEE
Confidence 23334444442 234579999999831 122345556666787764
No 47
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.23 E-value=2.1e-10 Score=100.41 Aligned_cols=169 Identities=14% Similarity=0.163 Sum_probs=95.5
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEec
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSI 125 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (294)
.+++|+++|. +|+||||++.+||..++ ..|++|+++|+|...+.....+. .| ....++.+++.
T Consensus 103 ~~~vi~ivG~-~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r~~a~eqL~-----------~~---~~~~gl~~~~~ 165 (306)
T 1vma_A 103 PPFVIMVVGV-NGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRAAAIEQLK-----------IW---GERVGATVISH 165 (306)
T ss_dssp SCEEEEEECC-TTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCHHHHHHHH-----------HH---HHHHTCEEECC
T ss_pred CCeEEEEEcC-CCChHHHHHHHHHHHHH--hcCCEEEEEccccccHHHHHHHH-----------HH---HHHcCCcEEec
Confidence 3567777765 99999999999999999 78999999999986532211110 00 00123444432
Q ss_pred ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH--HHHHHHhh-------cCCCcEEEEecCC
Q psy11347 126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH--LSLVQYLK-------GLPDIGAIVVTTP 196 (294)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~--~~~~~~l~-------~~~ad~vliv~~~ 196 (294)
.. . ......+.+.+......+ ||+||+|+|+...... +..+..+. ....+.+++|++.
T Consensus 166 ~s---~---------~~~~~v~~~al~~a~~~~-~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda 232 (306)
T 1vma_A 166 SE---G---------ADPAAVAFDAVAHALARN-KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDA 232 (306)
T ss_dssp ST---T---------CCHHHHHHHHHHHHHHTT-CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEG
T ss_pred CC---c---------cCHHHHHHHHHHHHHhcC-CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEC
Confidence 21 0 011112222233222124 9999999997643211 11111111 1246778888866
Q ss_pred chhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 197 QEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 197 ~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
. ...+.+.. .+.+.+ ..+..++|+|+++.. .....+-.+...+++|+.
T Consensus 233 ~-t~~~~l~~-a~~~~~-~~~i~gvVlTk~D~~------------~~gG~~l~~~~~~~~Pi~ 280 (306)
T 1vma_A 233 T-TGQNGLVQ-AKIFKE-AVNVTGIILTKLDGT------------AKGGITLAIARELGIPIK 280 (306)
T ss_dssp G-GHHHHHHH-HHHHHH-HSCCCEEEEECGGGC------------SCTTHHHHHHHHHCCCEE
T ss_pred C-CCHHHHHH-HHHHHh-cCCCCEEEEeCCCCc------------cchHHHHHHHHHHCCCEE
Confidence 5 22233333 233332 256679999999842 122346677777888777
No 48
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.21 E-value=2.3e-10 Score=99.89 Aligned_cols=163 Identities=11% Similarity=0.107 Sum_probs=92.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
+++++++| .+|+||||++.+||..++ ...|++|+++|.|++.+.....+..... . .++.+...
T Consensus 105 g~vi~lvG-~~GsGKTTl~~~LA~~l~-~~~G~~V~lv~~D~~r~~a~eqL~~~~~-----~---------~gl~~~~~- 167 (296)
T 2px0_A 105 SKYIVLFG-STGAGKTTTLAKLAAISM-LEKHKKIAFITTDTYRIAAVEQLKTYAE-----L---------LQAPLEVC- 167 (296)
T ss_dssp SSEEEEEE-STTSSHHHHHHHHHHHHH-HTTCCCEEEEECCCSSTTHHHHHHHHHT-----T---------TTCCCCBC-
T ss_pred CcEEEEEC-CCCCCHHHHHHHHHHHHH-HhcCCEEEEEecCcccchHHHHHHHHHH-----h---------cCCCeEec-
Confidence 55777765 589999999999999998 1379999999999976543322211000 0 01110000
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH--HHHHHHhhc-CCCcEEEEecCCchhhHHH
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH--LSLVQYLKG-LPDIGAIVVTTPQEVSLLD 203 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~--~~~~~~l~~-~~ad~vliv~~~~~~s~~~ 203 (294)
. ....++..+..+. + ||+||+|+++...... +..+..+.. ...+.+++|+... .....
T Consensus 168 ------~---------~~~~l~~al~~~~--~-~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at-~~~~~ 228 (296)
T 2px0_A 168 ------Y---------TKEEFQQAKELFS--E-YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSAT-AKYED 228 (296)
T ss_dssp ------S---------SHHHHHHHHHHGG--G-SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETT-BCHHH
T ss_pred ------C---------CHHHHHHHHHHhc--C-CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECC-CCHHH
Confidence 0 0123455565542 4 9999999997554321 222222221 1355556665322 12334
Q ss_pred HHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 204 VRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 204 ~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
+.++.+.+. .++..++|+|+++.. .....+..+...+|+|+.
T Consensus 229 ~~~~~~~~~--~l~~~giVltk~D~~------------~~~g~~~~~~~~~~~pi~ 270 (296)
T 2px0_A 229 MKHIVKRFS--SVPVNQYIFTKIDET------------TSLGSVFNILAESKIGVG 270 (296)
T ss_dssp HHHHTTTTS--SSCCCEEEEECTTTC------------SCCHHHHHHHHTCSCCCS
T ss_pred HHHHHHHHh--cCCCCEEEEeCCCcc------------cchhHHHHHHHHHCcCEE
Confidence 444444443 245679999998732 112355667777887775
No 49
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.09 E-value=1.4e-10 Score=104.00 Aligned_cols=149 Identities=17% Similarity=0.122 Sum_probs=80.2
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhh-hccccccccccccCCCCcceeccCeEEEeccc
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPR-MMGLLNEQVHQSASGWSPVFLEENLSVMSIGF 127 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~-~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (294)
.+.++.|++|+||||++.+|+..++ ..|++|+++|.|++.+.... +++ ....+......+++.+.+...
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~--~~g~kV~vi~~Dp~~~~~~g~~l~--------d~~~~~~~~~~~~~~i~~~~~ 149 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLI--ERGHRVAVLAVDPSSTRTGGSILG--------DKTRMARLAVHPNAYIRPSPT 149 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEEEC------------------------CHHHHTCTTEEEECCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--hCCCceEEEecCCCCCcccchhcc--------chhhHHhhccCCCeeEEECCC
Confidence 3445567899999999999999999 89999999999997642110 011 111111111234555554432
Q ss_pred ccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHH
Q psy11347 128 LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKE 207 (294)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~ 207 (294)
.. . . .......++.+..+...+ ||++|+|+|+ +.......+ ..+|.+++|++++..... ..+
T Consensus 150 ~~----~-~----~~~~~~t~d~i~~~~~~~-~~~iiiDTpG-i~~~~~~~~-----~~aD~vl~V~d~~~~~~~--~~l 211 (355)
T 3p32_A 150 SG----T-L----GGVTRATRETVVLLEAAG-FDVILIETVG-VGQSEVAVA-----NMVDTFVLLTLARTGDQL--QGI 211 (355)
T ss_dssp -C----C-H----HHHHHHHHHHHHHHHHTT-CCEEEEEECS-CSSHHHHHH-----TTCSEEEEEEESSTTCTT--TTC
T ss_pred Cc----c-c----cchhHHHHHHHHHHhhCC-CCEEEEeCCC-CCcHHHHHH-----HhCCEEEEEECCCCCccH--HHH
Confidence 10 0 0 011223344444444334 9999999995 443333333 689999999987553211 000
Q ss_pred HHHHHhcCCCeeEEEeccccc
Q psy11347 208 IDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 208 l~~l~~~~~~~~~vvvN~~~~ 228 (294)
...+ .+. ...+|+||+|.
T Consensus 212 ~~~~--~~~-p~ivVlNK~Dl 229 (355)
T 3p32_A 212 KKGV--LEL-ADIVVVNKADG 229 (355)
T ss_dssp CTTS--GGG-CSEEEEECCCG
T ss_pred HHhH--hhc-CCEEEEECCCC
Confidence 0000 112 35789999883
No 50
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.97 E-value=4.1e-09 Score=87.53 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=39.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGP 91 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~ 91 (294)
++...|+++||||||||++.++|..++ ..|++|+++|+|+++.
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~--~~G~~V~v~d~D~q~~ 47 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQL--RQGVRVMAGVVETHGR 47 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCTTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH--HCCCCEEEEEeCCCCC
Confidence 567799999999999999999999999 8999999999999764
No 51
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=98.82 E-value=1.2e-08 Score=100.73 Aligned_cols=92 Identities=16% Similarity=0.090 Sum_probs=64.7
Q ss_pred CccEEEEcCCCCCCh------HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCC
Q psy11347 159 GLEYLLIDTPPGTSD------EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPK 232 (294)
Q Consensus 159 ~yd~IiiD~p~~~~~------~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~ 232 (294)
.||++||++..++.. ....++.. ..+. ||+|++.....+..+...++.+...++++.|+|+|+...
T Consensus 201 ~~D~vvVEGaGGl~~p~~~~~~~adla~~---l~~P-VILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~---- 272 (831)
T 4a0g_A 201 SDLLCLVETAGGVASPGPSGTLQCDLYRP---FRLP-GILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGL---- 272 (831)
T ss_dssp -CEEEEEECCSSTTCBCTTSCBHHHHTGG---GCCC-EEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSS----
T ss_pred cCCEEEEECCCCccCCCCCCccHHHHHHH---cCCC-EEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCch----
Confidence 399999999865421 12222222 3555 889999999999999999999998899999999998641
Q ss_pred CCCCCccCCCCchhHHHHH-hhcCCceeeccCCCch
Q psy11347 233 CTKPSEIFPKDSGGAEKMC-AELSVPFLGSVPIDPL 267 (294)
Q Consensus 233 ~~~~~~i~~~~~~~~~~~~-~~~g~~~l~~Ip~~~~ 267 (294)
...+.+.+++ +..++++++.||+.+.
T Consensus 273 ---------~~~~~l~~~l~~~~~v~vLg~lP~~~~ 299 (831)
T 4a0g_A 273 ---------VNEVPLTSYLRNKVPVLVLPPVPKDPS 299 (831)
T ss_dssp ---------CTHHHHHHHTTTSSCEEEECCCCCCTT
T ss_pred ---------hHHHHHHHHHHhCCCceeeCCCCCCCH
Confidence 1233344443 3457777899998743
No 52
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=98.58 E-value=9.9e-08 Score=84.23 Aligned_cols=175 Identities=13% Similarity=0.125 Sum_probs=113.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
++++.++++..++||||++..|.+.+. ++|.++.++-... ...+-. ......+.+
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~--~~G~~a~~~~tgq-----tg~~~~------~~gi~~Dav------------ 206 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAK--LRGWRSKFLATGQ-----TGVMLE------GDGVALDAV------------ 206 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHH--HTTCCEEEECCSH-----HHHHHH------SCSCCGGGS------------
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHH--hcCCcEEEEeccc-----hhhhhh------cCCcchhHH------------
Confidence 789999999999999999999999999 8999999864321 111000 000000000
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHH-HHHHHhhcCCCcEEEEecCCchhhH----
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHL-SLVQYLKGLPDIGAIVVTTPQEVSL---- 201 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~-~~~~~l~~~~ad~vliv~~~~~~s~---- 201 (294)
........+..++..+. ++||+|+|...+++..+.. .++..+.....|.+|++..+....+
T Consensus 207 ------------~~df~aG~ve~~~~~~~--~~~d~vlVEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~ 272 (349)
T 2obn_A 207 ------------RVDFAAGAVEQMVMRYG--KNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNP 272 (349)
T ss_dssp ------------BHHHHHHHHHHHHHHHT--TTCSEEEECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCT
T ss_pred ------------HHHHHhhhHHHHHHHhc--cCCCEEEEeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCC
Confidence 00111113444555554 3499999999976532210 0123333347798999998876666
Q ss_pred -------HHHHHHHHHHHh-----cCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCceeeccCCC-chh
Q psy11347 202 -------LDVRKEIDFCRK-----VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPID-PLV 268 (294)
Q Consensus 202 -------~~~~~~l~~l~~-----~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~~Ip~~-~~~ 268 (294)
+.+..+++.+.. .+.++.|+++|.+.. ..+. ..+.++++.+.+|+|++..+.+. ..+
T Consensus 273 ~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~-------~~~~---~~~~~~~ie~~~glPv~d~~r~g~~~l 342 (349)
T 2obn_A 273 HVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHL-------DEYA---AKEAIAHTIAETGLPCTDVVRFGADVL 342 (349)
T ss_dssp TSBCCCHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTS-------CHHH---HHHHHHHHHHHHCSCEECHHHHCSHHH
T ss_pred ccCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-------CHHH---HHHHHHHHHHHHCCCEEEEecCCHHHH
Confidence 888888888865 778999999999762 1111 23566788888999999887655 344
Q ss_pred hh
Q psy11347 269 TR 270 (294)
Q Consensus 269 ~~ 270 (294)
.+
T Consensus 343 ~~ 344 (349)
T 2obn_A 343 LD 344 (349)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 53
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.57 E-value=4.8e-07 Score=80.40 Aligned_cols=150 Identities=15% Similarity=0.126 Sum_probs=74.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChh-hhccccccccccccCCCCcceeccCeEEEec
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMP-RMMGLLNEQVHQSASGWSPVFLEENLSVMSI 125 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~-~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (294)
..+|+++ |++|+||||+..+|+..+. ..|.+|.+++.|++..... .+++.. .....+...++..+.+.
T Consensus 56 ~~~i~i~-G~~g~GKSTl~~~l~~~~~--~~~~~v~v~~~d~~~~~~~~~il~d~--------~~~~~~~~~~~~~i~~~ 124 (341)
T 2p67_A 56 TLRLGVT-GTPGAGKSTFLEAFGMLLI--REGLKVAVIAVDPSSPVTGGSILGDK--------TRMNDLARAEAAFIRPV 124 (341)
T ss_dssp SEEEEEE-ECTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCC-----------------------CTTTTCTTEEEEEE
T ss_pred CEEEEEE-cCCCCCHHHHHHHHHHHHH--hcCCeEEEEeecCCcCCCCcceeccc--------chHHhhccCCCceeecC
Confidence 4556555 6999999999999999999 7899999999999753321 111110 00111111122222211
Q ss_pred ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHH
Q psy11347 126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVR 205 (294)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~ 205 (294)
... .. ... ....+.+.+..+.+.+ |+++|+|||+.... .... . ..+|.+++|++++.... .
T Consensus 125 ~~~------~~--l~g-~~~~~~~~~~~~~~~~-~~i~liDTpG~~~~-~~~~---~--~~aD~vl~Vvd~~~~~~--~- 185 (341)
T 2p67_A 125 PSS------GH--LGG-ASQRARELMLLCEAAG-YDVVIVETVGVGQS-ETEV---A--RMVDCFISLQIAGGGDD--L- 185 (341)
T ss_dssp CC-------------C-HHHHHHHHHHHHHHTT-CSEEEEEEECCTTH-HHHH---H--TTCSEEEEEECC---------
T ss_pred ccc------cc--cch-hHHHHHHHHHHhhccC-CCEEEEeCCCccch-HHHH---H--HhCCEEEEEEeCCccHH--H-
Confidence 100 00 000 0112222222222234 99999999965442 2222 2 68999999998854321 1
Q ss_pred HHHHHHHhcCCCeeEEEeccccc
Q psy11347 206 KEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 206 ~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
..+.. ...+.+ ..+|+||++.
T Consensus 186 ~~l~~-~~~~~p-~ivv~NK~Dl 206 (341)
T 2p67_A 186 QGIKK-GLMEVA-DLIVINKDDG 206 (341)
T ss_dssp CCCCH-HHHHHC-SEEEECCCCT
T ss_pred HHHHH-hhhccc-CEEEEECCCC
Confidence 00100 001223 4689999883
No 54
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.53 E-value=1.9e-06 Score=79.56 Aligned_cols=167 Identities=14% Similarity=0.201 Sum_probs=88.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
+.+|+++ |.+|+||||+...||..+. ..+++|++.+.|.........+.. | ....++.+++..
T Consensus 293 GeVI~LV-GpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~-----------~---~~r~~I~vV~Q~ 355 (503)
T 2yhs_A 293 PFVILMV-GVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQV-----------W---GQRNNIPVIAQH 355 (503)
T ss_dssp TEEEEEE-CCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHH-----------H---HHHHTCCEECCS
T ss_pred CeEEEEE-CCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHH-----------H---HHhcCceEEecc
Confidence 3455555 7799999999999999999 789999999998753110000000 0 000122222211
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHH--HHHHHHhh-------cCCCcEEEEecCCc
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEH--LSLVQYLK-------GLPDIGAIVVTTPQ 197 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~--~~~~~~l~-------~~~ad~vliv~~~~ 197 (294)
.. .. ....+.+.+..... .+||+||||+++...... +..+..+. ....+.++++.++.
T Consensus 356 ~~---~~---------p~~tV~e~l~~a~~-~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDat 422 (503)
T 2yhs_A 356 TG---AD---------SASVIFDAIQAAKA-RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS 422 (503)
T ss_dssp TT---CC---------HHHHHHHHHHHHHH-TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGG
T ss_pred cC---cC---------HHHHHHHHHHHHHh-cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCc
Confidence 10 00 01123333333322 339999999997653221 11111110 11245677777655
Q ss_pred hhhHHHHHHHHHHHH-hcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 198 EVSLLDVRKEIDFCR-KVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 198 ~~s~~~~~~~l~~l~-~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
.. .++...++.+. ..++ -++|+++.+.. .....+-.+...+++|+.
T Consensus 423 tG--q~al~~ak~f~~~~~i--tgvIlTKLD~t------------akgG~~lsi~~~~~~PI~ 469 (503)
T 2yhs_A 423 TG--QNAVSQAKLFHEAVGL--TGITLTKLDGT------------AKGGVIFSVADQFGIPIR 469 (503)
T ss_dssp GT--HHHHHHHHHHHHHTCC--SEEEEECGGGC------------SCCTHHHHHHHHHCCCEE
T ss_pred cc--HHHHHHHHHHHhhcCC--CEEEEEcCCCc------------ccccHHHHHHHHHCCCEE
Confidence 43 22223344443 3344 48999998731 112345566666777776
No 55
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.43 E-value=2.4e-06 Score=75.31 Aligned_cols=167 Identities=16% Similarity=0.137 Sum_probs=90.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEecc
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIG 126 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (294)
+.+++++ |.+|+||||++..||..+. ..+++|++++.|.........+... ...-++.+++..
T Consensus 129 g~vi~lv-G~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~--------------~~~~gv~~v~q~ 191 (328)
T 3e70_C 129 PYVIMFV-GFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEH--------------AKRIGVKVIKHS 191 (328)
T ss_dssp SEEEEEE-CCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHH--------------HHHTTCEEECCC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHH--------------HHHcCceEEecc
Confidence 4455555 6699999999999999999 8899999999998654322211100 001122232221
Q ss_pred cccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCC--hHHHHHHHHhh-cCCCcEEEEecCCchhhHHH
Q psy11347 127 FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTS--DEHLSLVQYLK-GLPDIGAIVVTTPQEVSLLD 203 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~--~~~~~~~~~l~-~~~ad~vliv~~~~~~s~~~ 203 (294)
... . ......+.+......+ ||++++|+++... ...+..+..+. ....|..+++.++... ..
T Consensus 192 ~~~---~---------p~~~v~e~l~~~~~~~-~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~--~~ 256 (328)
T 3e70_C 192 YGA---D---------PAAVAYDAIQHAKARG-IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG--NA 256 (328)
T ss_dssp TTC---C---------HHHHHHHHHHHHHHHT-CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT--TH
T ss_pred ccC---C---------HHHHHHHHHHHHHhcc-chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH--HH
Confidence 100 0 0012222222221123 9999999996542 22222211110 0257888888775443 34
Q ss_pred HHHHHHHHH-hcCCCeeEEEeccccccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 204 VRKEIDFCR-KVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 204 ~~~~l~~l~-~~~~~~~~vvvN~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
+...++.+. ..++ .++|+++.+.. .....+-.+....+.|+.
T Consensus 257 ~~~~~~~~~~~~~i--t~iilTKlD~~------------a~~G~~l~~~~~~~~pi~ 299 (328)
T 3e70_C 257 IVEQARQFNEAVKI--DGIILTKLDAD------------ARGGAALSISYVIDAPIL 299 (328)
T ss_dssp HHHHHHHHHHHSCC--CEEEEECGGGC------------SCCHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHhcCC--CEEEEeCcCCc------------cchhHHHHHHHHHCCCEE
Confidence 444444444 3343 48999998731 112344566667787776
No 56
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.23 E-value=4.3e-05 Score=66.63 Aligned_cols=41 Identities=34% Similarity=0.314 Sum_probs=36.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
+.+++++ |.+|+||||++..||..+. ..+++|++.+.|...
T Consensus 102 g~vi~lv-G~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 102 GRVVLVV-GVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFR 142 (304)
T ss_dssp SSEEEEE-CSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSS
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCCC
Confidence 5567777 6799999999999999999 889999999999864
No 57
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.11 E-value=3.4e-05 Score=68.61 Aligned_cols=42 Identities=31% Similarity=0.427 Sum_probs=34.2
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGP 91 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~ 91 (294)
..+..+.|..|+||||+...|+..+. ..+.+|.++..|++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~--~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLT--ERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC---
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhh--hcCCeEEEEeecCCCC
Confidence 34555569999999999999999998 7899999999998753
No 58
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.86 E-value=9.8e-05 Score=71.66 Aligned_cols=86 Identities=13% Similarity=-0.010 Sum_probs=57.9
Q ss_pred CccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCc
Q psy11347 159 GLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSE 238 (294)
Q Consensus 159 ~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~ 238 (294)
.|++.|+|+|+.... ...+...+ ..+|.+|+|+++.......+...+..+...+++. .+++||+|.. .
T Consensus 81 ~~~i~liDTPG~~df-~~~~~~~l--~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~-ilviNKiD~~------~-- 148 (704)
T 2rdo_7 81 PHRINIIDTPGHVDF-TIEVERSM--RVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPR-IAFVNKMDRM------G-- 148 (704)
T ss_pred ceeEEEEeCCCccch-HHHHHHHH--HHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCE-EEEEeCCCcc------c--
Confidence 389999999976531 22233344 5799999999988766666677777777778874 4789999842 1
Q ss_pred cCCCCchhHHHHHhhcCCce
Q psy11347 239 IFPKDSGGAEKMCAELSVPF 258 (294)
Q Consensus 239 i~~~~~~~~~~~~~~~g~~~ 258 (294)
.+.....+++.+.++...
T Consensus 149 --~~~~~~~~~l~~~l~~~~ 166 (704)
T 2rdo_7 149 --ANFLKVVNQIKTRLGANP 166 (704)
T ss_pred --ccHHHHHHHHHHHhCCCc
Confidence 123445666666666543
No 59
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.74 E-value=0.00076 Score=59.97 Aligned_cols=41 Identities=29% Similarity=0.312 Sum_probs=34.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
+.+++++ |.+|+||||++..||..+. ..+++|++.+.|...
T Consensus 157 g~vi~lv-G~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 157 PAVIMIV-GVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFR 197 (359)
T ss_dssp SEEEEEE-CCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSC
T ss_pred CeEEEEE-cCCCChHHHHHHHHHhhcc--ccCCEEEEecccccc
Confidence 4455555 6799999999999999999 789999999998754
No 60
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.73 E-value=0.00073 Score=58.69 Aligned_cols=41 Identities=29% Similarity=0.312 Sum_probs=34.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
+.+++++ |.+|+||||+...||..+. ..+++|++.+.|...
T Consensus 100 g~vi~lv-G~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 100 PAVIMIV-GVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFR 140 (302)
T ss_dssp CEEEEEE-CCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSC
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccc
Confidence 4455555 6799999999999999999 789999999998754
No 61
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.73 E-value=9.8e-05 Score=65.76 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=44.4
Q ss_pred CcChHHHHhhhc---cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 33 DPGIELVKSHLS---NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 33 ~~~~~~i~~~~~---~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
...++.|...+. -....+.++.|++|+||||++.++|..++ ..|.+|+++|++..
T Consensus 45 ~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s 102 (356)
T 1u94_A 45 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHA 102 (356)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCC
T ss_pred cCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCC
Confidence 356677777775 23455677778999999999999999999 78999999999653
No 62
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=97.66 E-value=4.6e-05 Score=69.28 Aligned_cols=52 Identities=27% Similarity=0.229 Sum_probs=47.9
Q ss_pred CceEEEEEecCC---CchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc
Q psy11347 46 VKHKVLVLSGKG---GVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE 102 (294)
Q Consensus 46 ~~~~i~v~s~kG---GvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~ 102 (294)
..++|.|+|... |.||||++.|||..|+ +.|+||+++ ...++++..||.+..
T Consensus 56 ~~K~IlVTS~~PTP~GEGKSTtsinLA~alA--~~GkkVLLi---LR~Psl~~~FGikgg 110 (557)
T 3pzx_A 56 DGKLILVTAITPTPAGEGKTTTSVGLTDALA--RLGKRVMVC---LREPSLGPSFGIKGG 110 (557)
T ss_dssp CCEEEEEEESCCCTTCCCHHHHHHHHHHHHH--HTTCCEEEE---ECCCCSHHHHHTCCC
T ss_pred CCcEEEEEcCCCCCCCCCchhHHHHHHHHHH--HcCCeEEEE---eCCCCccccCCCCCC
Confidence 579999999999 9999999999999999 899999999 788899999988754
No 63
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.66 E-value=7.5e-05 Score=70.04 Aligned_cols=86 Identities=16% Similarity=0.016 Sum_probs=57.3
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i 239 (294)
+.+.|+|+|+..... ..+...+ ..+|.+|+|++...........++..+...+++ +.+++|++|.. .
T Consensus 82 ~~i~liDTPG~~df~-~~~~~~l--~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~------~--- 148 (529)
T 2h5e_A 82 CLVNLLDTPGHEDFS-EDTYRTL--TAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRD------I--- 148 (529)
T ss_dssp EEEEEECCCCSTTCC-HHHHHGG--GGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSC------C---
T ss_pred eEEEEEECCCChhHH-HHHHHHH--HHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCc------c---
Confidence 899999999654311 2233344 579999999988765555667777777777787 57899999842 1
Q ss_pred CCCCchhHHHHHhhcCCcee
Q psy11347 240 FPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 240 ~~~~~~~~~~~~~~~g~~~l 259 (294)
....+..+++.+.++.+..
T Consensus 149 -~~~~~~~~~i~~~l~~~~~ 167 (529)
T 2h5e_A 149 -RDPMELLDEVENELKIGCA 167 (529)
T ss_dssp -SCHHHHHHHHHHHHCCEEE
T ss_pred -ccHHHHHHHHHHHhCCCcc
Confidence 1123456677777776544
No 64
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.64 E-value=0.00025 Score=63.34 Aligned_cols=55 Identities=13% Similarity=0.168 Sum_probs=43.4
Q ss_pred CcChHHHHhhhc--c-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 33 DPGIELVKSHLS--N-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 33 ~~~~~~i~~~~~--~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
...++.|...+. . ....+.++.+..|+||||++.++|..++ ..|.+|+++|++..
T Consensus 56 ~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s 113 (366)
T 1xp8_A 56 STGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHA 113 (366)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCC
T ss_pred cCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCC
Confidence 356777887776 2 2334555578999999999999999999 78999999999864
No 65
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.62 E-value=0.00021 Score=58.87 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=40.0
Q ss_pred ChHHHHhhhc-c-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 35 GIELVKSHLS-N-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 35 ~~~~i~~~~~-~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
.++.+...+. . ....+..+.|.+|+||||++..++..+. ..+.+|++++.+..
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEES 62 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSC
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccC
Confidence 3555665553 2 2344566679999999999999999888 67889999998764
No 66
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.60 E-value=0.00038 Score=61.51 Aligned_cols=42 Identities=31% Similarity=0.408 Sum_probs=35.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
...+..+.|..|+||||+...|+..+. ..+.+|.+++.|+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSS 95 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcc
Confidence 444555669999999999999999999 789999999998853
No 67
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.53 E-value=9.9e-05 Score=58.49 Aligned_cols=42 Identities=19% Similarity=0.151 Sum_probs=35.0
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
+++++.|++ ..|+||||++..|+..|. .+|++|.++..|+..
T Consensus 3 ~~~~i~i~G-~sGsGKTTl~~~L~~~l~--~~g~~v~~ik~~~~~ 44 (169)
T 1xjc_A 3 AMNVWQVVG-YKHSGKTTLMEKWVAAAV--REGWRVGTVKHHGHG 44 (169)
T ss_dssp -CCEEEEEC-CTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC--
T ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHhhH--hcCCeeeEEEeCCCC
Confidence 467777776 679999999999999999 789999999998753
No 68
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.46 E-value=0.00021 Score=57.90 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=32.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...|.+..|+| .||||.|..+|.... ..|+||+++-+..
T Consensus 28 ~g~i~v~tG~G-kGKTTaA~GlalRA~--g~G~rV~~vQF~K 66 (196)
T 1g5t_A 28 RGIIIVFTGNG-KGKTTAAFGTAARAV--GHGKNVGVVQFIK 66 (196)
T ss_dssp CCCEEEEESSS-SCHHHHHHHHHHHHH--HTTCCEEEEESSC
T ss_pred CceEEEECCCC-CCHHHHHHHHHHHHH--HCCCeEEEEEeeC
Confidence 34566665666 999999999999999 8999999997655
No 69
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.45 E-value=0.00045 Score=61.29 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=43.9
Q ss_pred CcChHHHHhhhc-c--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 33 DPGIELVKSHLS-N--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 33 ~~~~~~i~~~~~-~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
...++.|...+. . ....+..+.|.+|+||||++.+++..+. ..|.+|+++|++..
T Consensus 43 ~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 43 PTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHA 100 (349)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCC
T ss_pred ccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCC
Confidence 356677787776 2 2445666668999999999999999999 78999999999753
No 70
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.43 E-value=0.0017 Score=57.66 Aligned_cols=42 Identities=24% Similarity=0.367 Sum_probs=30.8
Q ss_pred hhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEe
Q psy11347 42 HLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLD 85 (294)
Q Consensus 42 ~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD 85 (294)
.+.....-+..+.|..|+||||+...|+..+. .. +.+++.++
T Consensus 117 ~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~--~~~~~~i~t~e 159 (356)
T 3jvv_A 117 RVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN--NTKYHHILTIE 159 (356)
T ss_dssp HHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH--HHCCCEEEEEE
T ss_pred HHHhCCCCEEEEECCCCCCHHHHHHHHHhccc--CCCCcEEEEcc
Confidence 33333444777779999999999999999998 54 56665554
No 71
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.39 E-value=0.0013 Score=59.50 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=49.4
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+... ....+...+ ..+|.+|+|++.+......+...+..+...+++.+.+++|++|.
T Consensus 75 ~~~~iiDtpG~~~-f~~~~~~~~--~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl 140 (405)
T 2c78_A 75 RHYSHVDCPGHAD-YIKNMITGA--AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDM 140 (405)
T ss_dssp CEEEEEECCCSGG-GHHHHHHHH--TTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred eEEEEEECCChHH-HHHHHHHHH--HHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccc
Confidence 7899999996433 223334444 68999999998877666667777888888888866789999984
No 72
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.37 E-value=0.00074 Score=53.72 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=34.5
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
|+++++++ |..|+||||++..|...+. ..|++|..+..++..
T Consensus 5 ~~~~i~i~-G~sGsGKTTl~~~l~~~l~--~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 5 MIPLLAFA-AWSGTGKTTLLKKLIPALC--ARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCCEEEEE-CCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCC-
T ss_pred cceEEEEE-eCCCCCHHHHHHHHHHhcc--ccCCceeEEeeCCCc
Confidence 45666555 5889999999999999999 789999999887643
No 73
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.37 E-value=0.0018 Score=59.96 Aligned_cols=66 Identities=11% Similarity=0.045 Sum_probs=46.2
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhh-------HHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVS-------LLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s-------~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+.. .....+...+ ..+|.+|++++.+... .......+..+...+.+.+.+++|++|.
T Consensus 111 ~~~~iiDTPG~~-~f~~~~~~~~--~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl 183 (483)
T 3p26_A 111 ANFTIVDAPGHR-DFVPNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN 183 (483)
T ss_dssp CEEEEECCCCCG-GGHHHHHHHH--TTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred ceEEEEECCCcH-HHHHHHHHhh--hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCc
Confidence 889999999643 3333344444 6899999999887642 2355666666777787767799999984
No 74
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.35 E-value=0.00017 Score=57.83 Aligned_cols=45 Identities=38% Similarity=0.367 Sum_probs=36.4
Q ss_pred hhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 42 HLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 42 ~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
+...+...+.++.|..|+||||++..||..+. ..|.+|.++|.|.
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~--~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQ--KEGYRVEVLDGDW 51 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEeeHHH
Confidence 34444556666779999999999999999999 7899999998763
No 75
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.32 E-value=0.0035 Score=49.70 Aligned_cols=87 Identities=18% Similarity=0.265 Sum_probs=50.2
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT 234 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~ 234 (294)
+++.|+|+|+...... .....+ ..+|.++++.+.+. .++..+..++..+... +.+ +.+|.|++|..
T Consensus 69 ~~~~l~Dt~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~----- 139 (190)
T 3con_A 69 CLLDILDTAGQEEYSA-MRDQYM--RTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVP-MVLVGNKCDLP----- 139 (190)
T ss_dssp EEEEEEECCC------------C--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCS-----
T ss_pred EEEEEEECCChHHHHH-HHHHhh--CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCcCC-----
Confidence 7899999996432111 111222 57888888876654 5666666666666542 344 66999999842
Q ss_pred CCCccCCCCchhHHHHHhhcCCcee
Q psy11347 235 KPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 235 ~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
... ...+..+++.+..+++++
T Consensus 140 -~~~---~~~~~~~~~~~~~~~~~~ 160 (190)
T 3con_A 140 -TRT---VDTKQAHELAKSYGIPFI 160 (190)
T ss_dssp -CCC---SCHHHHHHHHHHHTCCEE
T ss_pred -ccc---CCHHHHHHHHHHcCCeEE
Confidence 111 123456677777777655
No 76
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.31 E-value=0.0056 Score=46.84 Aligned_cols=87 Identities=17% Similarity=0.286 Sum_probs=52.8
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT 234 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~ 234 (294)
+++.|+|+|+....... ....+ ..+|.++++.+.+ ..++..+..++..+... +.+ +.+|.|++|..
T Consensus 51 ~~~~~~D~~G~~~~~~~-~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~----- 121 (166)
T 2ce2_X 51 CLLDILDTAGQEEYSAM-RDQYM--RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKSDLA----- 121 (166)
T ss_dssp EEEEEEECCCCSSCCHH-HHHHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCS-----
T ss_pred EEEEEEECCCchhhhHH-HHHhh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEchhhh-----
Confidence 78999999975432111 11122 3578888888765 35666666666666543 344 66999999842
Q ss_pred CCCccCCCCchhHHHHHhhcCCcee
Q psy11347 235 KPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 235 ~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
... ......+++.+..+++++
T Consensus 122 -~~~---~~~~~~~~~~~~~~~~~~ 142 (166)
T 2ce2_X 122 -ART---VESRQAQDLARSYGIPYI 142 (166)
T ss_dssp -CCC---SCHHHHHHHHHHHTCCEE
T ss_pred -hcc---cCHHHHHHHHHHcCCeEE
Confidence 111 123456677777777655
No 77
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.29 E-value=0.00018 Score=67.51 Aligned_cols=86 Identities=16% Similarity=0.051 Sum_probs=59.2
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i 239 (294)
+.+.|+|+|+.... ...+...+ ..+|.+|+|++...........++..+...+++ +.+|+|++|..
T Consensus 82 ~~i~liDTPG~~df-~~~~~~~l--~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iP-iivviNK~Dl~---------- 147 (528)
T 3tr5_A 82 YLINLLDTPGHADF-TEDTYRTL--TAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTP-IMTFINKMDRD---------- 147 (528)
T ss_dssp EEEEEECCCCSTTC-CHHHHHGG--GGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCC-EEEEEECTTSC----------
T ss_pred EEEEEEECCCchhH-HHHHHHHH--HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEeCCCCc----------
Confidence 88999999965431 22333444 579999999998876556667777888888887 45889999831
Q ss_pred CCCCchhHHHHHhhcCCcee
Q psy11347 240 FPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 240 ~~~~~~~~~~~~~~~g~~~l 259 (294)
.....+.++++.+.++....
T Consensus 148 ~~~~~~~l~ei~~~l~~~~~ 167 (528)
T 3tr5_A 148 TRPSIELLDEIESILRIHCA 167 (528)
T ss_dssp CSCHHHHHHHHHHHHCCEEE
T ss_pred cccHHHHHHHHHHhhCCCce
Confidence 11223456777777776544
No 78
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=97.28 E-value=0.00082 Score=59.33 Aligned_cols=141 Identities=18% Similarity=0.206 Sum_probs=84.9
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhccccccccccccCCCCcceeccCeEEEec
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSI 125 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (294)
..++|.++++-.++||||++..|...+. ++|.++.++-...++ .+.+.. ..+ +.
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~--~~G~~v~~v~tgqtg----~li~~~--------~gv------------~~ 221 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERAL--EKGIKAGFLATGQTG----ILIGAD--------AGY------------VI 221 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHH--HTTCCEEEEECSHHH----HHTTCS--------EEC------------CG
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHH--hcCCeEEEEccCcee----eeeccC--------CCC------------CC
Confidence 4789999999999999999999999999 899999887643211 111110 000 00
Q ss_pred ccccCCCCcceeecCccchHHHHHHHHhhccCCCccEEEEcCCCCCChHHHH--HHHHhhcCCCcEEEEecCCc------
Q psy11347 126 GFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLS--LVQYLKGLPDIGAIVVTTPQ------ 197 (294)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yd~IiiD~p~~~~~~~~~--~~~~l~~~~ad~vliv~~~~------ 197 (294)
. ... .+........++..+. .++||++|+...+++..+... .+..+.....|.+|+.-.+.
T Consensus 222 D----~~~------~~~~ag~~e~~i~~~~-~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~ 290 (350)
T 2g0t_A 222 D----AVP------ADFVSGVVEKAVLKLE-KTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFES 290 (350)
T ss_dssp G----GSB------GGGHHHHHHHHHHHHH-HTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTT
T ss_pred C----cee------cchhhHHHHhhHHHhh-hcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccC
Confidence 0 000 1111112223333332 134999999999776433322 22333334788777755443
Q ss_pred -----h-hhHHHHHHHHHHHHhcCCCeeEEE-ecc
Q psy11347 198 -----E-VSLLDVRKEIDFCRKVNIPIIGVV-ENM 225 (294)
Q Consensus 198 -----~-~s~~~~~~~l~~l~~~~~~~~~vv-vN~ 225 (294)
. .+++....+++.+. +.+++|++ +|.
T Consensus 291 ~~~~~~~~~i~~~i~~ie~l~--~~~V~gi~~lN~ 323 (350)
T 2g0t_A 291 FPEIPKKPDFEEERRLIETLS--NAKVIGGVSLNG 323 (350)
T ss_dssp CTTSSCCCCHHHHHHHHHHSS--SCEEEEEECSSC
T ss_pred CCcccCCcCHHHHHHHHHHhc--CCcEEEEEEcCc
Confidence 2 46666666666655 67899999 987
No 79
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.26 E-value=0.002 Score=53.31 Aligned_cols=38 Identities=16% Similarity=-0.023 Sum_probs=33.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
...+.++.|..|+||||.+..++..+. .+|.+|+++-.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~--~~g~kVli~~~ 48 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE--YADVKYLVFKP 48 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEEe
Confidence 455788889999999999999999999 88999999943
No 80
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.24 E-value=0.0017 Score=58.66 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=47.9
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+.. .....+...+ ..+|.+|+|++.+......+...+..+...+++.+.+++|++|.
T Consensus 66 ~~~~iiDtpG~~-~f~~~~~~~~--~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl 131 (397)
T 1d2e_A 66 RHYAHTDCPGHA-DYVKNMITGT--APLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADA 131 (397)
T ss_dssp CEEEEEECSSHH-HHHHHHHHTS--SCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred eEEEEEECCChH-HHHHHHHhhH--hhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECccc
Confidence 789999999642 2222233333 67999999998877655666677777777888866789999984
No 81
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.23 E-value=0.0065 Score=48.35 Aligned_cols=88 Identities=17% Similarity=0.117 Sum_probs=54.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSE 238 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~ 238 (294)
+.+.|+|+|+...... .....+ ..+|.+|++.+.+. .+......++..+.......+.+|+|++|. ....
T Consensus 93 ~~~~i~Dt~G~~~~~~-~~~~~~--~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~------~~~~ 163 (208)
T 3clv_A 93 IKFDIWDTAGQERYAS-IVPLYY--RGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK------NKFQ 163 (208)
T ss_dssp EEEEEEECTTGGGCTT-THHHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC------C-CC
T ss_pred eEEEEEECCCcHHHHH-HHHHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc------cccc
Confidence 7899999996321111 112222 57899999998765 566677777777765333557799999872 1111
Q ss_pred cCCCCchhHHHHHhhcCCcee
Q psy11347 239 IFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 239 i~~~~~~~~~~~~~~~g~~~l 259 (294)
. ..+.+.++.+..+++++
T Consensus 164 ~---~~~~~~~~~~~~~~~~~ 181 (208)
T 3clv_A 164 V---DILEVQKYAQDNNLLFI 181 (208)
T ss_dssp S---CHHHHHHHHHHTTCEEE
T ss_pred C---CHHHHHHHHHHcCCcEE
Confidence 1 23456667766676554
No 82
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.22 E-value=0.0033 Score=53.37 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=32.8
Q ss_pred hccCceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecC
Q psy11347 43 LSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLD 87 (294)
Q Consensus 43 ~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D 87 (294)
++.....+..+.|.+|+||||+...|+..+. .. ..+|.+.+-+
T Consensus 20 i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 20 LCHRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDP 63 (261)
T ss_dssp GGGCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESS
T ss_pred HhhCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCc
Confidence 3344555666679999999999999999998 54 6788777654
No 83
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.21 E-value=0.0014 Score=63.49 Aligned_cols=85 Identities=16% Similarity=-0.013 Sum_probs=56.5
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i 239 (294)
+.+.|+|+|+... ........+ ..+|.+|+|++............+..+...+++. .+++|++|..
T Consensus 77 ~~i~liDTPG~~d-f~~~~~~~l--~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~---------- 142 (691)
T 1dar_A 77 HRINIIDTPGHVD-FTIEVERSM--RVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR-IAFANKMDKT---------- 142 (691)
T ss_dssp EEEEEECCCSSTT-CHHHHHHHH--HHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCE-EEEEECTTST----------
T ss_pred eEEEEEECcCccc-hHHHHHHHH--HHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCE-EEEEECCCcc----------
Confidence 8999999997543 122233333 4689999999887755555666677777777774 4889999842
Q ss_pred CCCCchhHHHHHhhcCCce
Q psy11347 240 FPKDSGGAEKMCAELSVPF 258 (294)
Q Consensus 240 ~~~~~~~~~~~~~~~g~~~ 258 (294)
..+.....+++.+.++...
T Consensus 143 ~~~~~~~~~~l~~~l~~~~ 161 (691)
T 1dar_A 143 GADLWLVIRTMQERLGARP 161 (691)
T ss_dssp TCCHHHHHHHHHHTTCCCE
T ss_pred cCCHHHHHHHHHHHhCCCc
Confidence 1123445667776666543
No 84
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.20 E-value=0.0016 Score=55.16 Aligned_cols=89 Identities=19% Similarity=0.009 Sum_probs=54.1
Q ss_pred ccEEEEcCCCCCChHH---------HHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccC
Q psy11347 160 LEYLLIDTPPGTSDEH---------LSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVC 230 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~---------~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~ 230 (294)
+++.|+|+|+...... ......+....+|.+|+|++.+. ......+..++.+.+.+ +.+|+||+|..
T Consensus 48 ~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~p-vilv~NK~Dl~- 123 (256)
T 3iby_A 48 HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKP-VVVALNMMDIA- 123 (256)
T ss_dssp EEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSC-EEEEEECHHHH-
T ss_pred eEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCC-EEEEEEChhcC-
Confidence 6789999996443211 11112222257999999998766 44555566677777777 56889999842
Q ss_pred CCCCCCCccCCCCchhHHHHHhhcCCceee
Q psy11347 231 PKCTKPSEIFPKDSGGAEKMCAELSVPFLG 260 (294)
Q Consensus 231 ~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~ 260 (294)
....+ ....+.+.+.+|.+++.
T Consensus 124 ----~~~~~----~~~~~~l~~~lg~~vi~ 145 (256)
T 3iby_A 124 ----EHRGI----SIDTEKLESLLGCSVIP 145 (256)
T ss_dssp ----HHTTC----EECHHHHHHHHCSCEEE
T ss_pred ----CcCCc----HHHHHHHHHHcCCCEEE
Confidence 11111 12355677777887764
No 85
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.18 E-value=0.001 Score=64.49 Aligned_cols=84 Identities=15% Similarity=0.032 Sum_probs=54.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i 239 (294)
+.+.|+|+|+.... ...+...+ ..+|.+|+|++............+..+...+.+. .+|+|++|.. .
T Consensus 75 ~~i~liDTPG~~df-~~~~~~~l--~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~-ilviNK~Dl~------~--- 141 (693)
T 2xex_A 75 HRVNIIDTPGHVDF-TVEVERSL--RVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR-IVFVNKMDKL------G--- 141 (693)
T ss_dssp EEEEEECCCCCSSC-CHHHHHHH--HHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCE-EEEEECTTST------T---
T ss_pred eeEEEEECcCCcch-HHHHHHHH--HHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCE-EEEEECCCcc------c---
Confidence 89999999975431 12233333 4689999999887644445556667777777774 5889999842 1
Q ss_pred CCCCchhHHHHHhhcCCc
Q psy11347 240 FPKDSGGAEKMCAELSVP 257 (294)
Q Consensus 240 ~~~~~~~~~~~~~~~g~~ 257 (294)
.+....++++.+.++..
T Consensus 142 -~~~~~~~~~l~~~l~~~ 158 (693)
T 2xex_A 142 -ANFEYSVSTLHDRLQAN 158 (693)
T ss_dssp -CCHHHHHHHHHHHHCCC
T ss_pred -cchHHHHHHHHHHhCCC
Confidence 12334556666666654
No 86
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.16 E-value=0.002 Score=49.75 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=32.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
...+.++.|..|+||||++..++..+. ..|.++.+++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~--~~g~~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL--EAGKNAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH--TTTCCEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEcHH
Confidence 344555679999999999999999999 678888888764
No 87
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.15 E-value=0.0045 Score=49.94 Aligned_cols=36 Identities=22% Similarity=0.026 Sum_probs=32.1
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD 85 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD 85 (294)
..+.++.|.-|+||||.+..++..+. .+|++|+++-
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~--~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK--IAKQKIQVFK 43 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEE
Confidence 34777778899999999999999999 8999999995
No 88
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.14 E-value=0.0047 Score=54.79 Aligned_cols=55 Identities=11% Similarity=0.119 Sum_probs=44.4
Q ss_pred CcChHHHHhhhc-c--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 33 DPGIELVKSHLS-N--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 33 ~~~~~~i~~~~~-~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
....+.|...+. . ....+..+.|..|+||||++..++..++ ..|.+|+++|....
T Consensus 43 ~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s 100 (356)
T 3hr8_A 43 PTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHA 100 (356)
T ss_dssp CCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCC
T ss_pred cCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccc
Confidence 466788888776 2 2455666668899999999999999999 78999999998754
No 89
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.14 E-value=0.00018 Score=60.40 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=30.3
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
.+..+-|.+|+||||+...|+..+. ....+|.+-+.+..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 71 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDIT 71 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECC
Confidence 3444558999999999999999988 67778877655543
No 90
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.07 E-value=0.0015 Score=59.02 Aligned_cols=66 Identities=17% Similarity=0.110 Sum_probs=49.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhh-HHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVS-LLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s-~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+... ....+...+ ..+|.+|++++.+... ...+...+..+...+.+.+.+++|++|.
T Consensus 75 ~~~~iiDtPGh~~-~~~~~~~~~--~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 75 RRISFIDAPGHEV-LMATMLSGA--ALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEECCCCGG-GHHHHHHHH--TTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred ceEEEEECCCcHH-HHHHHHHHH--hhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccc
Confidence 6799999996432 223344444 6899999999887753 7777788888887777667799999984
No 91
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.02 E-value=0.00012 Score=65.22 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=32.2
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
.+..+-|.+|+||||+...|+..+. ....+|.+-+.|...
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i~~ 94 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTT 94 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEECCc
Confidence 3444558899999999999999998 777888887776654
No 92
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.01 E-value=0.013 Score=51.08 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=40.9
Q ss_pred cChHHHHhhhc----c--CceEEEEEecCCCchHHHHHHHHHHHHhhcCC--CCcEEEEecCCC
Q psy11347 34 PGIELVKSHLS----N--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE--SVDVGVLDLDIC 89 (294)
Q Consensus 34 ~~~~~i~~~~~----~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~--g~~VlliD~D~~ 89 (294)
..++.|...+. . ... +..+.|..|+||||++..++..++ .. |.+|++||..-.
T Consensus 9 TGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~--~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 9 TKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYM--RQYPDAVCLFYDSEFG 69 (333)
T ss_dssp CSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHH--HHCTTCEEEEEESSCC
T ss_pred CCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEeccch
Confidence 44566666666 2 234 678889999999999999999988 54 889999998643
No 93
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.99 E-value=0.0013 Score=62.98 Aligned_cols=85 Identities=21% Similarity=0.107 Sum_probs=66.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i 239 (294)
|.+-|||||+..+ ....+...+ ..+|.+|+|++....-...+..+++.+.+.+++.+ +++|++|..
T Consensus 67 ~~iNlIDTPGH~D-F~~Ev~raL--~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i-~~INKmDr~---------- 132 (638)
T 3j25_A 67 TKVNIIDTPGHMD-FLAEVYRSL--SVLDGAILLISAKDGVQAQTRILFHALRKMGIPTI-FFINKIDQN---------- 132 (638)
T ss_dssp CBCCCEECCCSSS-THHHHHHHH--TTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCE-ECCEECCSS----------
T ss_pred EEEEEEECCCcHH-HHHHHHHHH--HHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeE-EEEeccccc----------
Confidence 8899999997664 344555556 78999999999988877889999999999999964 789999842
Q ss_pred CCCCchhHHHHHhhcCCce
Q psy11347 240 FPKDSGGAEKMCAELSVPF 258 (294)
Q Consensus 240 ~~~~~~~~~~~~~~~g~~~ 258 (294)
..+.....+++.+.++...
T Consensus 133 ~a~~~~~~~~i~~~l~~~~ 151 (638)
T 3j25_A 133 GIDLSTVYQDIKEKLSAEI 151 (638)
T ss_dssp SCCSHHHHHHHHHTTCCCC
T ss_pred cCCHHHHHHHHHHHhCCCc
Confidence 3345567788888777544
No 94
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.98 E-value=0.011 Score=46.26 Aligned_cols=89 Identities=13% Similarity=0.169 Sum_probs=54.6
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+...... .....+ ..+|.+|++.+.+. .++..+..++..+.... ...+.+|.|+.|.. ..
T Consensus 61 ~~~~i~Dt~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-----~~ 132 (181)
T 2efe_B 61 VKFEIWDTAGQERYHS-LAPMYY--RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL-----DA 132 (181)
T ss_dssp EEEEEEECCCSGGGGG-GTHHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT-----TT
T ss_pred EEEEEEeCCCChhhhh-hhHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc-----cc
Confidence 7899999996432111 111222 57899999987754 56677777777776543 22467889999842 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+ ..+..+++.+..+++++
T Consensus 133 ~~~---~~~~~~~~~~~~~~~~~ 152 (181)
T 2efe_B 133 RKV---TAEDAQTYAQENGLFFM 152 (181)
T ss_dssp CCS---CHHHHHHHHHHTTCEEE
T ss_pred ccC---CHHHHHHHHHHcCCEEE
Confidence 121 23455667666776655
No 95
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.96 E-value=0.011 Score=46.95 Aligned_cols=89 Identities=12% Similarity=0.141 Sum_probs=54.6
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+...... .....+ ..+|.+|++.+.+. .++..+..++..+.... ...+.+|.|+.|.. ..
T Consensus 72 ~~~~i~Dt~G~~~~~~-~~~~~~--~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~-----~~ 143 (192)
T 2fg5_A 72 HKFLIWDTAGQERFHS-LAPMYY--RGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS-----DI 143 (192)
T ss_dssp EEEEEEEECCSGGGGG-GTHHHH--TTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GG
T ss_pred EEEEEEcCCCchhhHh-hhHHhh--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc-----cc
Confidence 7899999996432111 111222 57899999887654 56777777777776543 23467889999842 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+ ..+..+++.+..+.+++
T Consensus 144 ~~v---~~~~~~~~~~~~~~~~~ 163 (192)
T 2fg5_A 144 REV---PLKDAKEYAESIGAIVV 163 (192)
T ss_dssp CCS---CHHHHHHHHHTTTCEEE
T ss_pred ccc---CHHHHHHHHHHcCCEEE
Confidence 111 23456667766776554
No 96
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.96 E-value=0.0012 Score=53.97 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=32.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
.+.|+++ |.+|+||||++..|+..+. .. ++|.+++.|+.
T Consensus 30 ~~~i~i~-G~~g~GKTTl~~~l~~~~~--~~-~~~~~i~~d~~ 68 (221)
T 2wsm_A 30 TVAVNIM-GAIGSGKTLLIERTIERIG--NE-VKIGAMLGDVV 68 (221)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHHT--TT-SCEEEEECSCC
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHhc--cC-CeEEEEecCCC
Confidence 3445444 7999999999999999988 55 89999999885
No 97
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.93 E-value=0.0018 Score=51.91 Aligned_cols=37 Identities=22% Similarity=0.171 Sum_probs=31.1
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
..+.++.|..|+||||++..++..+. ..|++|+++-.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~--~~g~~v~~~~~ 39 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYK--LGKKKVAVFKP 39 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH--HTTCEEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEee
Confidence 34667778889999999999999988 78999998744
No 98
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.93 E-value=0.028 Score=44.34 Aligned_cols=86 Identities=13% Similarity=0.051 Sum_probs=48.8
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-------hhHHHHHHHHHHHHh--cCCCeeEEEeccccccC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-------VSLLDVRKEIDFCRK--VNIPIIGVVENMATFVC 230 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-------~s~~~~~~~l~~l~~--~~~~~~~vvvN~~~~~~ 230 (294)
+.+.|+|+|+......+ ....+ ..+|.+|++.+.+. .++..+..++..++. .+. .+.+|.|+.|..
T Consensus 74 ~~~~i~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~-piilv~NK~Dl~- 148 (198)
T 3t1o_A 74 TRFHLYTVPGQVFYNAS-RKLIL--RGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDV-PIVIQVNKRDLP- 148 (198)
T ss_dssp EEEEEEECCSCCSCSHH-HHHHT--TTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSS-CEEEEEECTTST-
T ss_pred eEEEEEeCCChHHHHHH-HHHHH--hcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCC-CEEEEEEchhcc-
Confidence 78999999964322111 12223 68999999998863 333444443333321 233 366889999842
Q ss_pred CCCCCCCccCCCCchhHHHHHhhcCC-cee
Q psy11347 231 PKCTKPSEIFPKDSGGAEKMCAELSV-PFL 259 (294)
Q Consensus 231 ~~~~~~~~i~~~~~~~~~~~~~~~g~-~~l 259 (294)
.. ...+.++++++..+. +++
T Consensus 149 ------~~---~~~~~~~~~~~~~~~~~~~ 169 (198)
T 3t1o_A 149 ------DA---LPVEMVRAVVDPEGKFPVL 169 (198)
T ss_dssp ------TC---CCHHHHHHHHCTTCCSCEE
T ss_pred ------cc---cCHHHHHHHHHhcCCceEE
Confidence 11 223455666666665 444
No 99
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.93 E-value=0.0048 Score=55.11 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=30.8
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEec
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDL 86 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~ 86 (294)
....+..+.|..|+||||+...|+..+. .. ..+|+.++-
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~ 173 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIED 173 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEES
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecc
Confidence 3445566668999999999999999998 55 678877774
No 100
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=96.92 E-value=0.004 Score=56.96 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=47.3
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhH-------HHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSL-------LDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~-------~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.++|+|+|+... ....+...+ ..+|.+|++++.+.... ..+...+..+...+++.+.+++|++|.
T Consensus 95 ~~~~iiDTPGh~~-f~~~~~~~~--~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 95 KHFTILDAPGHKS-FVPNMIGGA--SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD 167 (439)
T ss_pred eEEEEEECCChHH-HHHHHHhhH--hhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 7899999996432 222333333 57999999998876543 356667777777888867789999983
No 101
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.92 E-value=0.00017 Score=61.25 Aligned_cols=38 Identities=32% Similarity=0.435 Sum_probs=30.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.+..+-|.+|+||||+...|+..+. ....+|.+-+.|.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 71 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 3444559999999999999999998 7777887765554
No 102
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.88 E-value=0.017 Score=44.99 Aligned_cols=89 Identities=17% Similarity=0.236 Sum_probs=54.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc-----CCCeeEEEeccccccCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV-----NIPIIGVVENMATFVCPKC 233 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~-----~~~~~~vvvN~~~~~~~~~ 233 (294)
+.+.|+|+|+....... ....+ ..+|.+|+|.+.+. .++..+..++..+... +.+.+.+|.|+.|..
T Consensus 56 ~~~~~~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~---- 128 (178)
T 2hxs_A 56 VTLQIWDIGGQTIGGKM-LDKYI--YGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE---- 128 (178)
T ss_dssp EEEEEEECTTCCTTCTT-HHHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG----
T ss_pred EEEEEEECCCCccccch-hhHHH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc----
Confidence 78999999964321111 11223 57999999998754 5666666666666542 455567899999842
Q ss_pred CCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 234 TKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 234 ~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
....+ ..+..+++.+..+++++
T Consensus 129 -~~~~~---~~~~~~~~~~~~~~~~~ 150 (178)
T 2hxs_A 129 -HMRTI---KPEKHLRFCQENGFSSH 150 (178)
T ss_dssp -GGCSS---CHHHHHHHHHHHTCEEE
T ss_pred -ccccc---CHHHHHHHHHHcCCcEE
Confidence 11111 13345666666676554
No 103
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.88 E-value=0.011 Score=45.52 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=52.7
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcCCC--eeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNIP--IIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~~--~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+...... .....+ ..+|.++++.+.+. .+......++..+.....+ .+.+|.|+.|.. ..
T Consensus 55 ~~~~~~Dt~G~~~~~~-~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~-----~~ 126 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRA-LAPMYY--RGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT-----DV 126 (170)
T ss_dssp EEEEEEEECCSGGGGG-GTHHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG-----GG
T ss_pred EEEEEEcCCCchhhhc-ccHhhC--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc-----cc
Confidence 6789999996422111 111222 57898888887654 5667777777777655332 466778998842 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
.++ ..+..+.+.+..+.+++
T Consensus 127 ~~v---~~~~~~~~~~~~~~~~~ 146 (170)
T 1z0j_A 127 REV---MERDAKDYADSIHAIFV 146 (170)
T ss_dssp CCS---CHHHHHHHHHHTTCEEE
T ss_pred ccc---CHHHHHHHHHHcCCEEE
Confidence 111 23345566666665544
No 104
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.87 E-value=0.00016 Score=61.64 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=29.7
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.+..+-|.+|+||||+...|+..+. ....+|.+-+.|.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 88 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINL 88 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEES
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 3445558999999999999999988 6777887755444
No 105
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.85 E-value=0.021 Score=43.81 Aligned_cols=92 Identities=17% Similarity=0.148 Sum_probs=52.7
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+...... .....+ ..+|.++++.+.+. .++..+..++..+.... ...+.+|.|+.|.. ..
T Consensus 52 ~~~~~~D~~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~ 123 (170)
T 1ek0_A 52 VKFEIWDTAGQERFAS-LAPXYY--RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL-----QE 123 (170)
T ss_dssp EEEEEEEECCSGGGGG-GHHHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GS
T ss_pred EEEEEEECCCChhhhh-hhhhhh--ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc-----cc
Confidence 6789999996432111 122223 57899999887654 56777777776665432 22466888999853 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
.....-..+..+++.+..+.+++
T Consensus 124 ~~~~~v~~~~~~~~~~~~~~~~~ 146 (170)
T 1ek0_A 124 GGERKVAREEGEKLAEEKGLLFF 146 (170)
T ss_dssp SCCCCSCHHHHHHHHHHHTCEEE
T ss_pred ccccCCCHHHHHHHHHHcCCEEE
Confidence 11111123344556666666544
No 106
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.82 E-value=0.0046 Score=60.05 Aligned_cols=87 Identities=17% Similarity=0.012 Sum_probs=65.9
Q ss_pred CccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCc
Q psy11347 159 GLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSE 238 (294)
Q Consensus 159 ~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~ 238 (294)
+|-+=|||||+..+ ...++..++ ..+|.+|+|++....-...+..+++++.+.+++. -+++|++|. .
T Consensus 84 ~~~iNlIDTPGHvD-F~~Ev~~aL--r~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~-i~~iNKiDr------~--- 150 (709)
T 4fn5_A 84 NYRVNVIDTPGHVD-FTIEVERSL--RVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPR-IVYVNKMDR------Q--- 150 (709)
T ss_dssp CEEEEEECCCSCTT-CHHHHHHHH--HHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCE-EEEEECSSS------T---
T ss_pred CEEEEEEeCCCCcc-cHHHHHHHH--HHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCe-EEEEccccc------c---
Confidence 38889999997654 334444555 5799999999998888889999999999999995 588999983 2
Q ss_pred cCCCCchhHHHHHhhcCCcee
Q psy11347 239 IFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 239 i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+....++++.+.++....
T Consensus 151 -~a~~~~~~~ei~~~l~~~~~ 170 (709)
T 4fn5_A 151 -GANFLRVVEQIKKRLGHTPV 170 (709)
T ss_dssp -TCCHHHHHHHHHHHHCSCEE
T ss_pred -CccHHHHHHHhhhhccccee
Confidence 33345567777777775444
No 107
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.81 E-value=0.00013 Score=61.83 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=29.8
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 3444558999999999999999988 6777887765554
No 108
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.81 E-value=0.00032 Score=58.71 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=31.9
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
..+..+-|.+|+||||+...|+..+. ....+|.+-+.|...
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~ 71 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTND 71 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 33445558999999999999999998 777788886666543
No 109
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.81 E-value=0.006 Score=48.98 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=52.7
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT 234 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~ 234 (294)
+.+.|+|+|+......+ ....+ ..+|.++++.+.+ ..++..+..++..+... +.+ +.+|.|+.|..
T Consensus 72 ~~~~l~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~----- 142 (201)
T 3oes_A 72 FHLHLVDTAGQDEYSIL-PYSFI--IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP-VVLVGNKADLS----- 142 (201)
T ss_dssp EEEEEEEECCCCTTCCC-CGGGT--TTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCC-EEEEEECTTCG-----
T ss_pred EEEEEEECCCccchHHH-HHHHH--hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCc-----
Confidence 78899999963321100 11122 5789888888765 46777777777777544 344 56889999842
Q ss_pred CCCccCCCCchhHHHHHhhcCCcee
Q psy11347 235 KPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 235 ~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
....+ .....+++.+..+.+++
T Consensus 143 ~~~~v---~~~~~~~~~~~~~~~~~ 164 (201)
T 3oes_A 143 PEREV---QAVEGKKLAESWGATFM 164 (201)
T ss_dssp GGCCS---CHHHHHHHHHHHTCEEE
T ss_pred ccccc---CHHHHHHHHHHhCCeEE
Confidence 11111 12345666667777655
No 110
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.80 E-value=0.023 Score=44.75 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=54.4
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT 234 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~ 234 (294)
+.+.|+|+|+.... .......+ ..+|.+|++.+.+ ..++..+..++..+... +.+ +.+|.|+.|..
T Consensus 70 ~~~~l~Dt~G~~~~-~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~----- 140 (195)
T 3bc1_A 70 IHLQLWDTAGLERF-RSLTTAFF--RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKSDLE----- 140 (195)
T ss_dssp EEEEEEEECCSGGG-HHHHHHTT--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC-EEEEEECTTCG-----
T ss_pred EEEEEEeCCCcHHH-HHHHHHHH--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc-----
Confidence 78999999964322 11222223 5799999998865 46676677777776542 334 67899999842
Q ss_pred CCCccCCCCchhHHHHHhhcCCcee
Q psy11347 235 KPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 235 ~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
....+ ..+..+++.+..+++++
T Consensus 141 ~~~~~---~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 141 DQRAV---KEEEARELAEKYGIPYF 162 (195)
T ss_dssp GGCCS---CHHHHHHHHHHHTCCEE
T ss_pred ccccc---CHHHHHHHHHHcCCCEE
Confidence 11111 23456667766776655
No 111
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.80 E-value=0.0011 Score=52.62 Aligned_cols=41 Identities=15% Similarity=0.265 Sum_probs=31.5
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
|++++++++ .+|+||||++..|+..+. ..|+++..|-.|..
T Consensus 1 m~~~v~IvG-~SGsGKSTL~~~L~~~~~--~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 1 MSLILSIVG-TSDSGKTTLITRMMPILR--ERGLRVAVVKRHAH 41 (171)
T ss_dssp --CEEEEEE-SCHHHHHHHHHHHHHHHH--HTTCCEEEEEC---
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHhh--hcCCceEEEEEcCc
Confidence 467788886 889999999999999999 78888877766643
No 112
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.79 E-value=0.016 Score=45.00 Aligned_cols=89 Identities=16% Similarity=0.173 Sum_probs=52.6
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+...... .....+ ..+|.++++.+.+. .+......++..+.... ...+.+|.|+.|.. ..
T Consensus 64 ~~~~l~Dt~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~ 135 (179)
T 1z0f_A 64 IKLQIWDTAGQERFRA-VTRSYY--RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE-----AQ 135 (179)
T ss_dssp EEEEEEECTTGGGTCH-HHHHHH--HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GG
T ss_pred EEEEEEECCCChHhhh-hHHHHh--ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-----cc
Confidence 7899999996432111 122223 47898998887654 56666666666665432 22467889998842 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+ ..+..+++.+..+.+++
T Consensus 136 ~~~---~~~~~~~~~~~~~~~~~ 155 (179)
T 1z0f_A 136 RDV---TYEEAKQFAEENGLLFL 155 (179)
T ss_dssp CCS---CHHHHHHHHHHTTCEEE
T ss_pred ccc---CHHHHHHHHHHcCCEEE
Confidence 111 23445666666676554
No 113
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.77 E-value=0.0074 Score=46.43 Aligned_cols=88 Identities=18% Similarity=0.219 Sum_probs=52.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc--CCCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV--NIPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~--~~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+...... .....+ ..+|.++++.+.+. .++..+..++..+... +.+ +.+|.|+.|.. ..
T Consensus 54 ~~~~l~Dt~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~-----~~ 124 (168)
T 1z2a_A 54 VRLMLWDTAGQEEFDA-ITKAYY--RGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLL-----DD 124 (168)
T ss_dssp EEEEEECCTTGGGTTC-CCHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGG-----GG
T ss_pred EEEEEEcCCCcHhHHH-HHHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccC-----cc
Confidence 7899999996321100 011122 57899998887754 5566666666666443 444 66899999842 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+ ..+..+++.+..+.+++
T Consensus 125 ~~~---~~~~~~~~~~~~~~~~~ 144 (168)
T 1z2a_A 125 SCI---KNEEAEGLAKRLKLRFY 144 (168)
T ss_dssp CSS---CHHHHHHHHHHHTCEEE
T ss_pred ccc---CHHHHHHHHHHcCCeEE
Confidence 111 23445666666776554
No 114
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.75 E-value=0.00046 Score=61.41 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=30.9
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
.+..+-|.+|+||||+...||..+. ....+|.+-+.|..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVN 68 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECC
Confidence 3455559999999999999999998 77778887665543
No 115
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.75 E-value=0.00039 Score=62.22 Aligned_cols=39 Identities=26% Similarity=0.340 Sum_probs=31.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
.+..+-|.+|+||||+...||..+. ....+|.+-+.|..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~ 68 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 68 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECC
Confidence 3455558999999999999999998 77788887665553
No 116
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.75 E-value=0.0088 Score=54.55 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=47.6
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHH-------HHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLL-------DVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~-------~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+... ....+...+ ..+|.+|+|++.+..++. .+...+..+...+++.+.+++|++|.
T Consensus 84 ~~~~iiDtpG~~~-f~~~~~~~~--~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl 156 (435)
T 1jny_A 84 YFFTIIDAPGHRD-FVKNMITGA--SQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDL 156 (435)
T ss_dssp CEEEECCCSSSTT-HHHHHHHTS--SCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGG
T ss_pred eEEEEEECCCcHH-HHHHHHhhh--hhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccC
Confidence 8899999996544 222333444 689999999998876555 45556666667787767799999984
No 117
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.75 E-value=0.012 Score=46.60 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=52.4
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+......+ ....+ ..+|.+|++.+.+. .++..+..++..+.... ...+.+|.|+.|.. ..
T Consensus 74 ~~~~i~Dt~G~~~~~~~-~~~~~--~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-----~~ 145 (193)
T 2oil_A 74 VKAQIWDTAGLERYRAI-TSAYY--RGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS-----QA 145 (193)
T ss_dssp EEEEEEEESCCCTTCTT-HHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG-----GG
T ss_pred EEEEEEeCCCchhhhhh-hHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc-----cc
Confidence 77899999964321111 11222 57898988887654 56666677777776542 23467889999842 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+ .......+.+..+++++
T Consensus 146 ~~~---~~~~~~~~~~~~~~~~~ 165 (193)
T 2oil_A 146 REV---PTEEARMFAENNGLLFL 165 (193)
T ss_dssp CCS---CHHHHHHHHHHTTCEEE
T ss_pred ccc---CHHHHHHHHHHcCCEEE
Confidence 111 23345566666666544
No 118
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.74 E-value=0.0015 Score=54.42 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=28.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHH--HHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLAR--VLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~--~la~~~~g~~VlliD~D~ 88 (294)
...+..+.|.+|+||||++..++. .+. .+..+.+++.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~---~~~~~~~~~~~~ 69 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE---YGEPGVFVTLEE 69 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH---HCCCEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCeEEEEEccC
Confidence 344555569999999999999994 324 466788887754
No 119
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.74 E-value=0.00064 Score=57.05 Aligned_cols=38 Identities=34% Similarity=0.491 Sum_probs=30.5
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 62 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADI 62 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 4556669999999999999999988 7777887755444
No 120
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.74 E-value=0.0016 Score=52.87 Aligned_cols=42 Identities=29% Similarity=0.382 Sum_probs=35.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
...+..+.|.+|+||||++..|+..+. ..+.+|.+++.|...
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMDDHI 62 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccCccc
Confidence 345666678899999999999999998 778999999888654
No 121
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.72 E-value=0.0021 Score=51.97 Aligned_cols=47 Identities=30% Similarity=0.335 Sum_probs=36.2
Q ss_pred HhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 40 KSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 40 ~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
+..+......+.++.|..|+||||++..||..+. ..|..+.++|.|.
T Consensus 17 ~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~--~~G~~~~~~d~d~ 63 (200)
T 3uie_A 17 RQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY--QKGKLCYILDGDN 63 (200)
T ss_dssp HHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHH
T ss_pred HHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEecCch
Confidence 4444444555666669999999999999999998 6787777888763
No 122
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.70 E-value=0.011 Score=45.50 Aligned_cols=88 Identities=15% Similarity=0.232 Sum_probs=52.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+...... .....+ ..+|.++++.+.+. .++..+..++..+.... ...+.+|.|+.|.. .
T Consensus 52 ~~~~l~D~~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~------~ 122 (170)
T 1g16_A 52 VKLQIWDTAGQERFRT-ITTAYY--RGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME------T 122 (170)
T ss_dssp EEEEEECCTTGGGTSC-CCHHHH--TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT------T
T ss_pred EEEEEEeCCCChhhhh-hHHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC------c
Confidence 6789999995321100 011222 57899999888754 56666777777665442 22467899998831 1
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
... ..+..+++.+..+++++
T Consensus 123 ~~~---~~~~~~~~~~~~~~~~~ 142 (170)
T 1g16_A 123 RVV---TADQGEALAKELGIPFI 142 (170)
T ss_dssp CCS---CHHHHHHHHHHHTCCEE
T ss_pred Ccc---CHHHHHHHHHHcCCeEE
Confidence 111 23445666666776554
No 123
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.68 E-value=0.014 Score=50.49 Aligned_cols=66 Identities=14% Similarity=0.083 Sum_probs=40.8
Q ss_pred ccEEEEcCCCCCCh-------HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhc--CCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSD-------EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKV--NIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~-------~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~--~~~~~~vvvN~~~~ 228 (294)
+.++|+|||+.... ........+ ..+|.+++|++.+..--.....+++.+.+. +.+ ..+|+|++|.
T Consensus 55 ~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l--~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p-~ilV~NK~Dl 129 (301)
T 1wf3_A 55 RQIVFVDTPGLHKPMDALGEFMDQEVYEAL--ADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP-ILLVGNKLDA 129 (301)
T ss_dssp EEEEEEECCCCCCCCSHHHHHHHHHHHHHT--SSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSC-EEEEEECGGG
T ss_pred cEEEEecCccccchhhHHHHHHHHHHHHHH--hcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCC-EEEEEECccc
Confidence 78999999964431 011122333 689999999987542112234445666655 555 5688999984
No 124
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.68 E-value=0.0041 Score=50.97 Aligned_cols=38 Identities=18% Similarity=-0.038 Sum_probs=33.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
...|.|+.|.-|+||||.+..++..+. .+|++|+++-.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~--~~g~kVli~k~ 64 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQ--FAKQHAIVFKP 64 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEe
Confidence 345777889999999999999999999 89999999853
No 125
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.68 E-value=0.011 Score=45.48 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=52.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcCCC--eeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNIP--IIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~~--~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+...... .....+ ..+|.++++.+.+. .++..+..++..+.....+ .+.+|.|++|.. ..
T Consensus 55 ~~~~~~D~~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~-----~~ 126 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHS-LAPMYY--RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA-----NK 126 (170)
T ss_dssp EEEEEEEECCSGGGGG-GHHHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GG
T ss_pred EEEEEEeCCCcHHhhh-hhHHhc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc-----cc
Confidence 7899999996432111 112222 57899999887754 5677777777777654322 355667999842 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+ ..+...++.+..+.+++
T Consensus 127 ~~~---~~~~~~~~~~~~~~~~~ 146 (170)
T 1r2q_A 127 RAV---DFQEAQSYADDNSLLFM 146 (170)
T ss_dssp CCS---CHHHHHHHHHHTTCEEE
T ss_pred ccc---CHHHHHHHHHHcCCeEE
Confidence 111 12345556556665544
No 126
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.67 E-value=0.0027 Score=52.09 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=35.3
Q ss_pred HHHhhhccC-ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 38 LVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 38 ~i~~~~~~~-~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
.++..+... ...|+++ |.+|+||||++..|+..+. .. .++..++.|+.
T Consensus 28 ~~r~~~~~~~~~~i~iv-G~~gvGKTtl~~~l~~~~~--~~-~~~~~i~~d~~ 76 (226)
T 2hf9_A 28 KNRKLLNKHGVVAFDFM-GAIGSGKTLLIEKLIDNLK--DK-YKIACIAGDVI 76 (226)
T ss_dssp HHHHHHHHTTCEEEEEE-ESTTSSHHHHHHHHHHHHT--TT-CCEEEEEEETT
T ss_pred HHHHHHHhCCCeEEEEE-cCCCCCHHHHHHHHHHHhc--cC-CeEEEEECCCC
Confidence 344444333 4555555 7799999999999999987 54 78999998874
No 127
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.66 E-value=0.024 Score=45.67 Aligned_cols=89 Identities=16% Similarity=0.054 Sum_probs=52.5
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+.-.. ...... .-..+|.+|++.+.+ ..++..+..++..+.... ...+.+|.|+.|.. ..
T Consensus 75 ~~l~l~Dt~G~~~~--~~~~~~-~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~-----~~ 146 (201)
T 2ew1_A 75 VKLQIWDTAGQERF--RSITQS-YYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA-----ER 146 (201)
T ss_dssp EEEEEEEECCSGGG--HHHHGG-GSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GG
T ss_pred EEEEEEECCCcHHH--HHHHHH-HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-----cc
Confidence 67899999964321 112111 125789999998765 456666777777765432 22456888999842 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
.++. .+..+++.+..+.+++
T Consensus 147 ~~v~---~~~~~~~~~~~~~~~~ 166 (201)
T 2ew1_A 147 REVS---QQRAEEFSEAQDMYYL 166 (201)
T ss_dssp CSSC---HHHHHHHHHHHTCCEE
T ss_pred cccC---HHHHHHHHHHcCCEEE
Confidence 1221 3345566666666554
No 128
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.65 E-value=0.0011 Score=58.96 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=30.3
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.+..+-|.+|+||||+...+|..+. ....+|.+-+.|.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i 68 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 3455558899999999999999998 7777887765554
No 129
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.64 E-value=0.00054 Score=60.81 Aligned_cols=39 Identities=26% Similarity=0.289 Sum_probs=30.7
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
..+..+-|.+|+||||+...||..+. ....+|.+-+.|.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i 79 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRV 79 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 33455559999999999999999998 7777887766554
No 130
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.62 E-value=0.023 Score=44.97 Aligned_cols=89 Identities=19% Similarity=0.193 Sum_probs=54.3
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+...... .....+ ..+|.+|++.+.+. .++..+..++..+.... ...+.+|.|+.|.. ..
T Consensus 65 ~~~~i~Dt~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~-----~~ 136 (196)
T 3tkl_A 65 IKLQIWDTAGQERFRT-ITSSYY--RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-----TK 136 (196)
T ss_dssp EEEEEEEECCSGGGCT-THHHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-----TT
T ss_pred EEEEEEECCCcHhhhh-hHHHHH--hhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc-----cc
Confidence 6789999996432111 112223 57999999887654 66666777777775542 22456888999842 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+ .....+++.+..+.+++
T Consensus 137 ~~~---~~~~~~~~~~~~~~~~~ 156 (196)
T 3tkl_A 137 KVV---DYTTAKEFADSLGIPFL 156 (196)
T ss_dssp CCS---CHHHHHHHHHHTTCCEE
T ss_pred ccc---CHHHHHHHHHHcCCcEE
Confidence 111 13456677777787766
No 131
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.62 E-value=0.0016 Score=58.14 Aligned_cols=39 Identities=28% Similarity=0.339 Sum_probs=30.8
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
..+..+-|.+|+||||+...||..+. ....+|.+-+.|.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i 75 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 75 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEEC
Confidence 33555559999999999999999998 7777888765554
No 132
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.62 E-value=0.00078 Score=55.85 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=29.8
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
+..+-|.+|+||||+...|+..+. ....+|.+-+.|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 444558999999999999999988 67778877655543
No 133
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.60 E-value=0.0094 Score=51.70 Aligned_cols=66 Identities=20% Similarity=0.120 Sum_probs=43.0
Q ss_pred ccEEEEcCCCCCChH--------HH-HHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDE--------HL-SLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~--------~~-~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
++++|+|+|+..... .. .....+ ..+|.++++++.+. .+......+++.+...+.+ ..+|+|++|.
T Consensus 59 ~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l--~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~p-vilV~NK~Dl 134 (308)
T 3iev_A 59 AQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL--EEADVILFMIDATEGWRPRDEEIYQNFIKPLNKP-VIVVINKIDK 134 (308)
T ss_dssp EEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH--HHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCC-EEEEEECGGG
T ss_pred CeEEEEECcCCCccccchhHHHHHHHHHHHHh--hcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCC-EEEEEECccC
Confidence 889999999653211 11 112222 46899999998875 3444444447777776666 5588999984
No 134
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.011 Score=46.85 Aligned_cols=89 Identities=13% Similarity=0.134 Sum_probs=54.3
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+.-.. .......+ ..+|.++++.+.+ ..++..+..++..+.... ...+.+|.|+.|.. ..
T Consensus 72 ~~~~i~Dt~G~~~~-~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~ 143 (191)
T 3dz8_A 72 VKLQIWDTAGQERY-RTITTAYY--RGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME-----EE 143 (191)
T ss_dssp EEEEEECHHHHHHC-HHHHHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GG
T ss_pred EEEEEEeCCChHHH-HHHHHHHH--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-----cc
Confidence 78999999952211 11122223 5799999988776 467777777777776542 22466888999842 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+ ..+..+.+.+..+.+++
T Consensus 144 ~~~---~~~~~~~~~~~~~~~~~ 163 (191)
T 3dz8_A 144 RVV---PTEKGQLLAEQLGFDFF 163 (191)
T ss_dssp CCS---CHHHHHHHHHHHTCEEE
T ss_pred ccc---CHHHHHHHHHHcCCeEE
Confidence 111 23445666677777655
No 135
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.58 E-value=0.032 Score=44.05 Aligned_cols=89 Identities=18% Similarity=0.221 Sum_probs=52.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT 234 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~ 234 (294)
+.+.|+|+|+............+ ..+|.+|++.+.+. .++..+..++..+... +.+ +.+|.|++|..
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~----- 140 (189)
T 1z06_A 69 IKIQLWDTAGQERFRKSMVQHYY--RNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKCDLR----- 140 (189)
T ss_dssp EEEEEEECCCSHHHHTTTHHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCG-----
T ss_pred EEEEEEECCCchhhhhhhhHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc-----
Confidence 68999999963211100112223 57999999988654 5666666666666432 334 66899999842
Q ss_pred CCCccCCCCchhHHHHHhhcCCcee
Q psy11347 235 KPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 235 ~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
...++ ..+..+++.+..+++++
T Consensus 141 ~~~~v---~~~~~~~~~~~~~~~~~ 162 (189)
T 1z06_A 141 SAIQV---PTDLAQKFADTHSMPLF 162 (189)
T ss_dssp GGCCS---CHHHHHHHHHHTTCCEE
T ss_pred cccee---CHHHHHHHHHHcCCEEE
Confidence 11111 13445666666776655
No 136
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.58 E-value=0.00015 Score=62.25 Aligned_cols=38 Identities=29% Similarity=0.313 Sum_probs=30.3
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.+..+-|.+|+||||+...|+..+. ....+|.+-+.|.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i 72 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI 72 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 3444558999999999999999998 7777888766555
No 137
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.57 E-value=0.022 Score=48.40 Aligned_cols=36 Identities=28% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
++++ |.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 5 v~lv-G~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i 40 (270)
T 3sop_A 5 IMVV-GQSGLGKSTLVNTLFKSQV--SRKASSWNREEKI 40 (270)
T ss_dssp EEEE-ESSSSSHHHHHHHHHHHHC--------------C
T ss_pred EEEE-CCCCCCHHHHHHHHhCCCC--CCCCccccCCccc
Confidence 4444 7899999999999999988 6666776655443
No 138
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.57 E-value=0.0025 Score=52.93 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=35.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
...+.++.|.+|+||||++..+|..+. ..+.+|++++.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEEH 62 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccCC
Confidence 445667778899999999999999998 78999999998764
No 139
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.55 E-value=0.00055 Score=62.79 Aligned_cols=54 Identities=20% Similarity=0.370 Sum_probs=42.7
Q ss_pred cChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcC-CCCcEEEEecCCC
Q psy11347 34 PGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSN-ESVDVGVLDLDIC 89 (294)
Q Consensus 34 ~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~-~g~~VlliD~D~~ 89 (294)
...+.|...+.. ....+.++.|..|+||||++.++|...+ . .|.+|+++++...
T Consensus 185 tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a--~~~g~~vl~~slE~~ 240 (444)
T 2q6t_A 185 TGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA--LKEGVGVGIYSLEMP 240 (444)
T ss_dssp CSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH--HTTCCCEEEEESSSC
T ss_pred CCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEECCCC
Confidence 445666666643 2456888889999999999999999988 4 5889999999753
No 140
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.54 E-value=0.0048 Score=47.23 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=39.1
Q ss_pred ccEEEEcCCCCCC-----hHHHH-HHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTS-----DEHLS-LVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~-----~~~~~-~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
..+.|+|+|+... ..... ....+ ..+|.++++.+.+...-.....+.+.+...+.+ +.+|.|+.|.
T Consensus 49 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 120 (161)
T 2dyk_A 49 GRFLLVDTGGLWSGDKWEKKIQEKVDRAL--EDAEVVLFAVDGRAELTQADYEVAEYLRRKGKP-VILVATKVDD 120 (161)
T ss_dssp EEEEEEECGGGCSSSSCCHHHHHHHHHHT--TTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCC-EEEEEECCCS
T ss_pred ceEEEEECCCCCCccchHHHHHHHHHHHH--HhCCEEEEEEECCCcccHhHHHHHHHHHhcCCC-EEEEEECccc
Confidence 5788999996443 11111 12223 578989988877652112223445555555666 5689999884
No 141
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.54 E-value=0.049 Score=41.53 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=50.2
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT 234 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~ 234 (294)
+.+.|+|+|+...... .....+ ..+|.++++.+.+. .++..+..++..+... +.+ +.+|.|+.|..
T Consensus 52 ~~~~l~D~~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~----- 122 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAA-IRDNYF--RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLE----- 122 (168)
T ss_dssp EEEEEEECCC---CHH-HHHHHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGG-----
T ss_pred EEEEEEECCCcchhHH-HHHHHh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECcccc-----
Confidence 7899999996432211 111222 36888888887654 5666666666666432 344 66999999842
Q ss_pred CCCccCCCCchhHHHHHhhcCCcee
Q psy11347 235 KPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 235 ~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
...++ ..+...++.+..+.+++
T Consensus 123 ~~~~~---~~~~~~~~~~~~~~~~~ 144 (168)
T 1u8z_A 123 DKRQV---SVEEAKNRADQWNVNYV 144 (168)
T ss_dssp GGCCS---CHHHHHHHHHHHTCEEE
T ss_pred ccCcc---CHHHHHHHHHHcCCeEE
Confidence 11111 13345566666666544
No 142
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.54 E-value=0.00048 Score=61.32 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=31.2
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
..+..+-|.+|+||||+...||..+. ....+|.+-+.|..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVT 68 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 33455558999999999999999998 77778887665543
No 143
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.52 E-value=0.018 Score=46.01 Aligned_cols=89 Identities=13% Similarity=0.119 Sum_probs=54.3
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+..... ......+ ..+|.+|++.+.+. .++..+..++..+.... ...+.+|.|+.|.. ..
T Consensus 57 ~~~~l~Dt~G~~~~~-~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~ 128 (203)
T 1zbd_A 57 IKLQIWDTAGLERYR-TITTAYY--RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME-----DE 128 (203)
T ss_dssp EEEEEEEECCSGGGH-HHHHTTG--GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT-----TS
T ss_pred EEEEEEECCCchhhc-chHHHhh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC-----cc
Confidence 688999999643221 1122222 46899999888754 56677777777776532 22466899999842 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+ ..+..+++.+.++++++
T Consensus 129 ~~~---~~~~~~~~~~~~~~~~~ 148 (203)
T 1zbd_A 129 RVV---SSERGRQLADHLGFEFF 148 (203)
T ss_dssp CCS---CHHHHHHHHHHHTCEEE
T ss_pred ccc---CHHHHHHHHHHCCCeEE
Confidence 111 23455667777776655
No 144
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.52 E-value=0.071 Score=42.41 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=52.4
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT 234 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~ 234 (294)
+.+.|+|+|+......+ ....+ ..+|.++++.+.+. .++..+..++..+... +.+ +.+|.|+.|..
T Consensus 62 ~~~~l~Dt~G~~~~~~~-~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~----- 132 (206)
T 2bov_A 62 VQIDILDTAGQEDYAAI-RDNYF--RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLE----- 132 (206)
T ss_dssp EEEEEEECCCTTCCHHH-HHHHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCG-----
T ss_pred EEEEEEcCCChhhhHHH-HHHHH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCcc-----
Confidence 68999999965432221 11222 36888888886654 6666776666666543 344 56899999842
Q ss_pred CCCccCCCCchhHHHHHhhcCCcee
Q psy11347 235 KPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 235 ~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
...++ ..+.+.++.+..+.+++
T Consensus 133 ~~~~~---~~~~~~~~~~~~~~~~~ 154 (206)
T 2bov_A 133 DKRQV---SVEEAKNRAEQWNVNYV 154 (206)
T ss_dssp GGCCS---CHHHHHHHHHHHTCEEE
T ss_pred ccccc---cHHHHHHHHHHhCCeEE
Confidence 11111 23445666666676655
No 145
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=96.52 E-value=0.0089 Score=56.70 Aligned_cols=65 Identities=17% Similarity=0.085 Sum_probs=44.2
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
|.+.|+|+|+... ....+...+ ..+|.+|+|++........+...+......+++ +-+++|++|.
T Consensus 73 ~~inliDTPGh~d-F~~ev~r~l--~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl 137 (600)
T 2ywe_A 73 YKLHLIDTPGHVD-FSYEVSRAL--AACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDL 137 (600)
T ss_dssp EEEEEECCCCSGG-GHHHHHHHH--HTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTS
T ss_pred EEEEEEECCCcHh-HHHHHHHHH--HhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCc
Confidence 7899999996543 223344444 579999999988664333444455555566777 6688999984
No 146
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.52 E-value=0.016 Score=49.09 Aligned_cols=89 Identities=18% Similarity=0.072 Sum_probs=51.3
Q ss_pred ccEEEEcCCCCCCh-----HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcC-CCeeEEEeccccccCCCC
Q psy11347 160 LEYLLIDTPPGTSD-----EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVN-IPIIGVVENMATFVCPKC 233 (294)
Q Consensus 160 yd~IiiD~p~~~~~-----~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~-~~~~~vvvN~~~~~~~~~ 233 (294)
+.+.|+|+|+.... ........+....+|.++++++.+.. .....+...+...+ .+ +.+|+|++|..
T Consensus 50 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~---- 122 (271)
T 3k53_A 50 KEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKN-IILVLNKFDLL---- 122 (271)
T ss_dssp EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCS-EEEEEECHHHH----
T ss_pred ceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCC-EEEEEEChhcC----
Confidence 67899999964321 11112222222579999999877653 34444455555556 55 56899999832
Q ss_pred CCCCccCCCCchhHHHHHhhcCCceee
Q psy11347 234 TKPSEIFPKDSGGAEKMCAELSVPFLG 260 (294)
Q Consensus 234 ~~~~~i~~~~~~~~~~~~~~~g~~~l~ 260 (294)
....+. ...+.+.+.+|++++.
T Consensus 123 -~~~~~~----~~~~~l~~~lg~~~~~ 144 (271)
T 3k53_A 123 -KKKGAK----IDIKKMRKELGVPVIP 144 (271)
T ss_dssp -HHHTCC----CCHHHHHHHHSSCEEE
T ss_pred -cccccH----HHHHHHHHHcCCcEEE
Confidence 111111 1256677777877763
No 147
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.51 E-value=0.015 Score=46.75 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=53.9
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+....... ....+ ..+|.+|+|.+.+. .++..+..++..+.... ...+.+|.|+.|.. ..
T Consensus 57 ~~~~l~Dt~G~~~~~~~-~~~~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~ 128 (206)
T 2bcg_Y 57 VKLQIWDTAGQERFRTI-TSSYY--RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK-----DK 128 (206)
T ss_dssp EEEEEECCTTTTTTTCC-CGGGG--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT-----TT
T ss_pred EEEEEEeCCChHHHHHH-HHHhc--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-----cc
Confidence 68999999964321100 11122 57899999988754 67777777777776542 23467889999842 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+ ..+...++.+..+++++
T Consensus 129 ~~~---~~~~~~~~~~~~~~~~~ 148 (206)
T 2bcg_Y 129 RVV---EYDVAKEFADANKMPFL 148 (206)
T ss_dssp CCS---CHHHHHHHHHHTTCCEE
T ss_pred ccc---CHHHHHHHHHHcCCeEE
Confidence 111 23445666666776655
No 148
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.50 E-value=0.017 Score=47.81 Aligned_cols=97 Identities=9% Similarity=0.064 Sum_probs=44.9
Q ss_pred ccEEEEcCCCCCCh---------HHHHHHHHhhcCCCcEEEEecCCchh---hHHHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347 160 LEYLLIDTPPGTSD---------EHLSLVQYLKGLPDIGAIVVTTPQEV---SLLDVRKEIDFCRKVNIPIIGVVENMAT 227 (294)
Q Consensus 160 yd~IiiD~p~~~~~---------~~~~~~~~l~~~~ad~vliv~~~~~~---s~~~~~~~l~~l~~~~~~~~~vvvN~~~ 227 (294)
..+.|+|+|+-... .....+. .....+|.+|+|++.+.. ....+..+.+.+.........+|+|+.|
T Consensus 78 ~~i~liDTpG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D 156 (239)
T 3lxx_A 78 TELVVVDTPGIFDTEVPNAETSKEIIRCIL-LTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKD 156 (239)
T ss_dssp EEEEEEECCSCC-----CHHHHHHHHHHHH-HTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGG
T ss_pred ceEEEEECCCccCCCCCHHHHHHHHHHHHH-hcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCc
Confidence 67899999964321 1111111 111356888888875432 2223333333332211124678899988
Q ss_pred ccCCCCCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 228 FVCPKCTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 228 ~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
.... ....+......+.++++.+..+..+.
T Consensus 157 ~~~~--~~~~~~i~~~~~~l~~l~~~~~~~~~ 186 (239)
T 3lxx_A 157 DLGD--TNLHDYLREAPEDIQDLMDIFGDRYC 186 (239)
T ss_dssp GC--------------CHHHHHHHHHHSSSEE
T ss_pred cCCc--ccHHHHHHhchHHHHHHHHHcCCEEE
Confidence 4210 01111111222356777777776554
No 149
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.49 E-value=0.0048 Score=59.47 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=53.8
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i 239 (294)
+.+.|+|+|+... ........+ ..+|.+++|+++.......+..++..+...+++.+ +++|+.+. .
T Consensus 74 ~~~nliDTpG~~~-f~~~~~~~l--~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~i-lv~NKiD~------~---- 139 (665)
T 2dy1_A 74 HRVFLLDAPGYGD-FVGEIRGAL--EAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM-VVVTKLDK------G---- 139 (665)
T ss_dssp EEEEEEECCCSGG-GHHHHHHHH--HHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECGGG------C----
T ss_pred EEEEEEeCCCccc-hHHHHHHHH--hhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEE-EEecCCch------h----
Confidence 7889999996443 222333334 46899999998766555566677788877788754 78999883 1
Q ss_pred CCCCchhHHHHHhhcC
Q psy11347 240 FPKDSGGAEKMCAELS 255 (294)
Q Consensus 240 ~~~~~~~~~~~~~~~g 255 (294)
....+..+++.+.++
T Consensus 140 -~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 140 -GDYYALLEDLRSTLG 154 (665)
T ss_dssp -CCHHHHHHHHHHHHC
T ss_pred -hhHHHHHHHHHHHhC
Confidence 223445666666666
No 150
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.49 E-value=0.0015 Score=55.59 Aligned_cols=40 Identities=25% Similarity=0.425 Sum_probs=31.9
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
.+..+-|.+|+||||+...|+..+. ....+|.+-+.|...
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~ 77 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNLNS 77 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEETTT
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCc
Confidence 3444558999999999999999998 778888887666543
No 151
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.46 E-value=0.00051 Score=58.55 Aligned_cols=39 Identities=28% Similarity=0.329 Sum_probs=29.8
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
..+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~ 71 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERK 71 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 33445558999999999999999988 6777887755443
No 152
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.46 E-value=0.092 Score=40.83 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=51.7
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT 234 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~ 234 (294)
+.+.|+|+|+......+ ....+ ..+|.++++.+.+. .++..+..++..+... +.+ +.+|.|+.|..
T Consensus 66 ~~~~l~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~----- 136 (187)
T 2a9k_A 66 VQIDILDTAGQEDYAAI-RDNYF--RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLE----- 136 (187)
T ss_dssp EEEEEEECCCTTCCHHH-HHHHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGG-----
T ss_pred EEEEEEECCCCcccHHH-HHHHh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc-----
Confidence 68999999965432211 12222 36888888887654 5666666666655432 344 56899999842
Q ss_pred CCCccCCCCchhHHHHHhhcCCcee
Q psy11347 235 KPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 235 ~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
....+ ......++.+..+.+++
T Consensus 137 ~~~~~---~~~~~~~~~~~~~~~~~ 158 (187)
T 2a9k_A 137 DKRQV---SVEEAKNRAEQWNVNYV 158 (187)
T ss_dssp GGCCS---CHHHHHHHHHHTTCEEE
T ss_pred ccCcc---CHHHHHHHHHHcCCeEE
Confidence 11111 23445666666676554
No 153
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.43 E-value=0.0023 Score=50.90 Aligned_cols=37 Identities=32% Similarity=0.503 Sum_probs=29.9
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
.+.++.|..|+||||++..|+..+. ..|.+..+++.|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~--~~g~~~~~i~~~ 40 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR--KEGVNYKMVSFG 40 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH--TTTCCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--hcCcceEEEehH
Confidence 4566778899999999999999999 778666666653
No 154
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.43 E-value=0.058 Score=41.58 Aligned_cols=67 Identities=15% Similarity=0.037 Sum_probs=40.0
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc----CCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV----NIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~ 228 (294)
+.+.++|+|+........... .....+|.++++.+.+ ..++..+..++..+... +.+ +.+|.|+.|.
T Consensus 52 ~~~~~~D~~g~~~~~~~~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl 123 (175)
T 2nzj_A 52 TTLVVVDTWEAEKLDKSWSQE-SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP-IILVGNKADL 123 (175)
T ss_dssp EEEEEECCC-------CHHHH-HTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC-EEEEEECTTC
T ss_pred EEEEEEecCCCCccchhhhHH-hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEEChhh
Confidence 678999999643311111111 1114688888887665 46777777777777654 344 5689999984
No 155
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.42 E-value=0.0027 Score=53.71 Aligned_cols=37 Identities=46% Similarity=0.778 Sum_probs=31.0
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
+.++.|-.|+||||++..|+..|. ..|..++++|.|.
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~--~~g~~~i~~~~D~ 42 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILS--KNNIDVIVLGSDL 42 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECTHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH--hCCCEEEEECchH
Confidence 455557799999999999999998 7898888887763
No 156
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.41 E-value=0.12 Score=39.10 Aligned_cols=88 Identities=19% Similarity=0.256 Sum_probs=50.2
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHh----cCCCeeEEEeccccccCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRK----VNIPIIGVVENMATFVCPKCT 234 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~~~~~~~ 234 (294)
+.+.|+|+|+......+ ....+ ..+|.++++.+... .++..+...+..+.+ .+.+ +.+|.|+.|..
T Consensus 51 ~~~~l~D~~G~~~~~~~-~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~----- 121 (167)
T 1kao_A 51 SVLEILDTAGTEQFASM-RDLYI--KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLE----- 121 (167)
T ss_dssp EEEEEEECCCTTCCHHH-HHHHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGG-----
T ss_pred EEEEEEECCCchhhHHH-HHHHh--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCccc-----
Confidence 67899999964432221 11222 35788888876554 566666666655543 2344 67899999842
Q ss_pred CCCccCCCCchhHHHHHhhcCCcee
Q psy11347 235 KPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 235 ~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
...++ ......++.+..+.+++
T Consensus 122 ~~~~~---~~~~~~~~~~~~~~~~~ 143 (167)
T 1kao_A 122 SEREV---SSSEGRALAEEWGCPFM 143 (167)
T ss_dssp GGCCS---CHHHHHHHHHHHTSCEE
T ss_pred ccccC---CHHHHHHHHHHhCCCEE
Confidence 11111 12344566666666555
No 157
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.41 E-value=0.033 Score=48.81 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=26.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
+..+.|.+|+||||+...|+..+. .....|.+-|.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~--~~~g~i~i~~~ 207 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIP--KEERIISIEDT 207 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSC--TTSCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc--CCCcEEEECCe
Confidence 444557889999999999999988 66666665544
No 158
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.41 E-value=0.018 Score=49.00 Aligned_cols=89 Identities=19% Similarity=0.100 Sum_probs=52.7
Q ss_pred ccEEEEcCCCCCChH---------HHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccC
Q psy11347 160 LEYLLIDTPPGTSDE---------HLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVC 230 (294)
Q Consensus 160 yd~IiiD~p~~~~~~---------~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~ 230 (294)
+.+.|+|+|+..... .......+....+|.+|+|++.+. ......+...+.+.+.+ +.+|+||+|..
T Consensus 50 ~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p-~ivv~NK~Dl~- 125 (274)
T 3i8s_A 50 HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIP-CIVALNMLDIA- 125 (274)
T ss_dssp CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCC-EEEEEECHHHH-
T ss_pred CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCC-EEEEEECccch-
Confidence 678999999643211 011111111257999999998765 44555666677777777 55889998842
Q ss_pred CCCCCCCccCCCCchhHHHHHhhcCCceee
Q psy11347 231 PKCTKPSEIFPKDSGGAEKMCAELSVPFLG 260 (294)
Q Consensus 231 ~~~~~~~~i~~~~~~~~~~~~~~~g~~~l~ 260 (294)
....+ ....+.+.+.+|.+++.
T Consensus 126 ----~~~~~----~~~~~~l~~~lg~~~i~ 147 (274)
T 3i8s_A 126 ----EKQNI----RIEIDALSARLGCPVIP 147 (274)
T ss_dssp ----HHTTE----EECHHHHHHHHTSCEEE
T ss_pred ----hhhhH----HHHHHHHHHhcCCCEEE
Confidence 11111 12245666667777663
No 159
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.37 E-value=0.04 Score=42.28 Aligned_cols=89 Identities=18% Similarity=0.129 Sum_probs=50.6
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc--CCCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV--NIPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~--~~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+.... ..+.......+|.++++.+.+. .++..+..++..+... ....+.+|.|+.|.. ..
T Consensus 55 ~~l~i~Dt~G~~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~ 126 (170)
T 1z08_A 55 VNLAIWDTAGQERF---HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE-----KE 126 (170)
T ss_dssp EEEEEEECCCC----------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG-----GG
T ss_pred EEEEEEECCCcHhh---hhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc-----cc
Confidence 68899999964321 1111111157898998887654 5667777776666542 122467899999852 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+ ..+..+++.+..+.+++
T Consensus 127 ~~~---~~~~~~~~~~~~~~~~~ 146 (170)
T 1z08_A 127 RHV---SIQEAESYAESVGAKHY 146 (170)
T ss_dssp CCS---CHHHHHHHHHHTTCEEE
T ss_pred ccc---CHHHHHHHHHHcCCeEE
Confidence 111 13445666666676554
No 160
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.36 E-value=0.013 Score=47.08 Aligned_cols=89 Identities=15% Similarity=0.097 Sum_probs=50.7
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+..... ......+ ..+|.+|++.+.+. .++..+..++..+.... ...+.+|.|+.|.. ..
T Consensus 74 ~~l~l~Dt~G~~~~~-~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~ 145 (200)
T 2o52_A 74 VKLQIWDTAGQERFR-SVTRSYY--RGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD-----PE 145 (200)
T ss_dssp EEEEEECCTTHHHHS-CCCHHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG-----GG
T ss_pred eEEEEEcCCCcHhHH-HHHHHHh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc-----cc
Confidence 688999999521000 0011122 57899999887654 56666677776665432 22467889999842 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+ ......++.+..+++++
T Consensus 146 ~~v---~~~~~~~~~~~~~~~~~ 165 (200)
T 2o52_A 146 REV---TFLEASRFAQENELMFL 165 (200)
T ss_dssp CCS---CHHHHHHHHHHTTCEEE
T ss_pred ccc---CHHHHHHHHHHcCCEEE
Confidence 111 12344556666666554
No 161
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.35 E-value=0.012 Score=48.83 Aligned_cols=40 Identities=20% Similarity=0.092 Sum_probs=34.3
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
++..|-|+.|.-|+||||-+..++..+. .+|++|+++-.-
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~--~~g~kvli~kp~ 56 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQ--IAQYKCLVIKYA 56 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHH--TTTCCEEEEEET
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEeec
Confidence 3556778889999999999999999999 899999999743
No 162
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.34 E-value=0.0018 Score=55.83 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=30.0
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
+..+.|..|+||||++..|+..+. ..+.++.++|+|.-.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg--~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR--REGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH--HHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh--hcCCCeeEeecchhh
Confidence 455558899999999999999988 678889999999654
No 163
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.34 E-value=0.0018 Score=55.30 Aligned_cols=40 Identities=30% Similarity=0.300 Sum_probs=30.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.|.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 83 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPL 83 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 333455558999999999999999998 6777887755443
No 164
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.32 E-value=0.019 Score=45.60 Aligned_cols=66 Identities=17% Similarity=0.096 Sum_probs=43.0
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+...... .....+ ..+|.+|+|.+.+. .+...+..++..+.... ...+.+|.|+.|.
T Consensus 75 ~~l~l~Dt~G~~~~~~-~~~~~~--~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl 143 (192)
T 2il1_A 75 IRLQIWDTAGQERFNS-ITSAYY--RSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143 (192)
T ss_dssp EEEEEEEECCSGGGHH-HHHHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred EEEEEEeCCCcHHHHH-HHHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc
Confidence 7899999996432211 122223 46899999887654 56766777777666542 2346789999984
No 165
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.32 E-value=0.003 Score=53.33 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=24.2
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEE
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVG 82 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vl 82 (294)
+..+-|.+|+||||+...|+..+. ....+|.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~ 63 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE 63 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE
Confidence 444558999999999999999987 5555554
No 166
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.31 E-value=0.038 Score=44.15 Aligned_cols=89 Identities=13% Similarity=0.126 Sum_probs=51.3
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT 234 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~ 234 (294)
+.+.|+|+++.........-..+ ..+|.+|++.+.+ ..++..+..++..+... +.+ +.+|.|+.|..
T Consensus 72 ~~l~i~Dt~g~~~~~~~~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~----- 143 (195)
T 3cbq_A 72 VTLVVYDIWEQGDAGGWLRDHCL--QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLA----- 143 (195)
T ss_dssp EEEEEECCCCCSGGGHHHHHHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCT-----
T ss_pred EEEEEEecCCCccchhhhHHHhh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeechhcc-----
Confidence 67889999854332211111112 3588888888765 46677777777766542 344 56889999842
Q ss_pred CCCccCCCCchhHHHHHhhcCCcee
Q psy11347 235 KPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 235 ~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
....+. .+..+++.+..+.+++
T Consensus 144 ~~~~v~---~~~~~~~a~~~~~~~~ 165 (195)
T 3cbq_A 144 RSREVS---LEEGRHLAGTLSCKHI 165 (195)
T ss_dssp TTCCSC---HHHHHHHHHHTTCEEE
T ss_pred ccCCcC---HHHHHHHHHHhCCEEE
Confidence 111221 3345566666665544
No 167
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.30 E-value=0.012 Score=59.64 Aligned_cols=66 Identities=23% Similarity=0.273 Sum_probs=46.6
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+... ....+...+ ..+|.+|+|++.+......+...+..+...+++.+.+++|++|.
T Consensus 359 ~kI~IIDTPGHed-F~~~mi~ga--s~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDL 424 (1289)
T 3avx_A 359 RHYAHVDCPGHAD-YVKNMITGA--AQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDM 424 (1289)
T ss_dssp CEEEEEECCCHHH-HHHHHHHTS--CCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTT
T ss_pred EEEEEEECCChHH-HHHHHHHHH--hhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeeccc
Confidence 7899999996432 222233333 68999999998876545556666677777788866789999984
No 168
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.30 E-value=0.004 Score=49.47 Aligned_cols=36 Identities=25% Similarity=0.497 Sum_probs=30.5
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
+.++.|-.|+||||++..|+..|. ..|.++.+++.|
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~--~~g~~~~~~~~~ 38 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD--NQGINNKIINYG 38 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH--TTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEEECC
Confidence 445567889999999999999999 789999888653
No 169
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.29 E-value=0.017 Score=46.50 Aligned_cols=88 Identities=16% Similarity=0.239 Sum_probs=52.5
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+...... .....+ ..+|.+|++.+.+. .++..+..++..+.... ...+.+|.|+.|.. .
T Consensus 69 ~~~~l~Dt~G~~~~~~-~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~------~ 139 (213)
T 3cph_A 69 VKLQLWDTAGQERFRT-ITTAYY--RGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME------T 139 (213)
T ss_dssp EEEEEECCTTGGGGTC-CCHHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS------S
T ss_pred EEEEEEeCCCcHHHHH-HHHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc------c
Confidence 6899999996321110 011222 57899999988754 56666677777665432 22467899999831 1
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+ ..+..+++.+.++++++
T Consensus 140 ~~~---~~~~~~~~~~~~~~~~~ 159 (213)
T 3cph_A 140 RVV---TADQGEALAKELGIPFI 159 (213)
T ss_dssp CCS---CHHHHHHHHHHHTCCEE
T ss_pred ccc---CHHHHHHHHHHcCCEEE
Confidence 111 23445666666776655
No 170
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.28 E-value=0.00062 Score=60.90 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=29.2
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
.+..+-|.+|+||||+...||..+. ....+|.+-+.|
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 66 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKL 66 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEE
Confidence 3455559999999999999999988 777788775444
No 171
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.28 E-value=0.042 Score=43.30 Aligned_cols=88 Identities=15% Similarity=0.083 Sum_probs=53.0
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC---CCeeEEEeccccccCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN---IPIIGVVENMATFVCPKCTK 235 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~---~~~~~vvvN~~~~~~~~~~~ 235 (294)
+.+.|+|+|+...... .....+ ..+|.+|++.+.+. .++..+..++..+.... ...+.+|.|+.|..
T Consensus 64 ~~~~i~Dt~G~~~~~~-~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~------ 134 (195)
T 1x3s_A 64 AKLAIWDTAGQERFRT-LTPSYY--RGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE------ 134 (195)
T ss_dssp EEEEEEEECSSGGGCC-SHHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS------
T ss_pred EEEEEEeCCCchhhhh-hhHHHh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc------
Confidence 7899999996432111 112223 57899999987654 56667777777776532 23467889999841
Q ss_pred CCccCCCCchhHHHHHhhcCCcee
Q psy11347 236 PSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 236 ~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
...+ ..+...++.+..+.+++
T Consensus 135 ~~~~---~~~~~~~~~~~~~~~~~ 155 (195)
T 1x3s_A 135 NREV---DRNEGLKFARKHSMLFI 155 (195)
T ss_dssp SCCS---CHHHHHHHHHHTTCEEE
T ss_pred cccc---CHHHHHHHHHHcCCEEE
Confidence 1111 13345566666676654
No 172
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.27 E-value=0.0051 Score=53.61 Aligned_cols=54 Identities=13% Similarity=0.282 Sum_probs=44.2
Q ss_pred cChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 34 PGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 34 ~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
..++.|...+.. ....+.++.|..|+||||++.++|...+ ..|.+|+++.+...
T Consensus 53 TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a--~~g~~vl~~slE~s 107 (315)
T 3bh0_A 53 SGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS--DNDDVVNLHSLEMG 107 (315)
T ss_dssp CSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH--TTTCEEEEEESSSC
T ss_pred CChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEECCCC
Confidence 456667766643 3566888889999999999999999999 78899999998753
No 173
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.27 E-value=0.024 Score=43.66 Aligned_cols=89 Identities=13% Similarity=0.153 Sum_probs=50.4
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT 234 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~ 234 (294)
+.+.++|+|+............+ ..+|.++++.+.+. .++..+..++..+... +.+ +.+|.|+.|..
T Consensus 51 ~~~~i~D~~g~~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~----- 122 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGGWLQDHCL--QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLA----- 122 (169)
T ss_dssp EEEEEECCCCC--------CHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCG-----
T ss_pred EEEEEEECCCccccchhhhhhhh--ccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCC-EEEEeeCcchh-----
Confidence 77889999864321110111111 35788888887654 6677777777666543 344 56889998842
Q ss_pred CCCccCCCCchhHHHHHhhcCCcee
Q psy11347 235 KPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 235 ~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
....+ ..+..+++.+..+.+++
T Consensus 123 ~~~~~---~~~~~~~~~~~~~~~~~ 144 (169)
T 3q85_A 123 RSREV---SLEEGRHLAGTLSCKHI 144 (169)
T ss_dssp GGCCS---CHHHHHHHHHHTTCEEE
T ss_pred hcccC---CHHHHHHHHHHcCCcEE
Confidence 11122 23455667777776654
No 174
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.26 E-value=0.038 Score=43.11 Aligned_cols=88 Identities=18% Similarity=0.157 Sum_probs=51.4
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT 234 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~ 234 (294)
+.+.|+|+|+......+ ....+ ..+|.++++.+.+. .++..+..++..+... +.+ +.+|.|+.|..
T Consensus 54 ~~~~l~Dt~G~~~~~~~-~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~----- 124 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSIF-PQTYS--IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLH----- 124 (181)
T ss_dssp EEEEEEECCCCCTTCCC-CGGGT--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CC-EEEEEECTTCT-----
T ss_pred EEEEEEeCCCchhhhHH-HHHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccch-----
Confidence 77899999963321100 11111 46898888887654 6666666666655332 344 56889999842
Q ss_pred CCCccCCCCchhHHHHHhhcCCcee
Q psy11347 235 KPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 235 ~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
....+ ..+..+++.+..+.+++
T Consensus 125 ~~~~~---~~~~~~~~~~~~~~~~~ 146 (181)
T 3t5g_A 125 MERVI---SYEEGKALAESWNAAFL 146 (181)
T ss_dssp TTCCS---CHHHHHHHHHHTTCEEE
T ss_pred hccee---cHHHHHHHHHHhCCcEE
Confidence 12222 23456677777777655
No 175
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.25 E-value=0.016 Score=45.76 Aligned_cols=89 Identities=11% Similarity=0.170 Sum_probs=53.8
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+....... ....+ ..+|.+|++.+.+ ..++..+..++..+.... ...+.+|.|+.|.. ..
T Consensus 71 ~~~~l~Dt~G~~~~~~~-~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~ 142 (189)
T 2gf9_A 71 IKLQIWDTAGQERYRTI-TTAYY--RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE-----DE 142 (189)
T ss_dssp EEEEEEECCSCCSSCCS-GGGGG--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GG
T ss_pred EEEEEEeCCCcHHHhhh-HHHhc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc-----cc
Confidence 78899999964321100 11222 5789999998774 456777777777776542 23467899999842 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+ ..+..+++.+.++++++
T Consensus 143 ~~~---~~~~~~~~~~~~~~~~~ 162 (189)
T 2gf9_A 143 RVV---PAEDGRRLADDLGFEFF 162 (189)
T ss_dssp CCS---CHHHHHHHHHHHTCEEE
T ss_pred cCC---CHHHHHHHHHHcCCeEE
Confidence 111 13455667777776554
No 176
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.25 E-value=0.042 Score=43.00 Aligned_cols=89 Identities=16% Similarity=0.097 Sum_probs=52.0
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+..... ......+ ..+|.+|++.+.+. .+...+..++..+.... ...+.+|.|+.|.. ..
T Consensus 59 ~~~~l~Dt~G~~~~~-~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~ 130 (186)
T 2bme_A 59 VKLQIWDTAGQERFR-SVTRSYY--RGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD-----AD 130 (186)
T ss_dssp EEEEEEEECCSGGGH-HHHHTTS--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GG
T ss_pred EEEEEEeCCCcHHHH-HHHHHHH--hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-----cc
Confidence 678999999643221 1122222 57899998887654 56666666666665431 22467899999842 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+ ......++.+..+.+++
T Consensus 131 ~~~---~~~~~~~~~~~~~~~~~ 150 (186)
T 2bme_A 131 REV---TFLEASRFAQENELMFL 150 (186)
T ss_dssp CCS---CHHHHHHHHHHTTCEEE
T ss_pred ccc---CHHHHHHHHHHcCCEEE
Confidence 111 12345566666666554
No 177
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.24 E-value=0.0055 Score=49.86 Aligned_cols=49 Identities=16% Similarity=0.073 Sum_probs=37.6
Q ss_pred hHHHHhhhc--cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 36 IELVKSHLS--NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 36 ~~~i~~~~~--~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
++.|...+. -....+.++.|++|+||||++..+|. . .+.+|++++.+.+
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~ 56 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGG 56 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCC
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCC
Confidence 455665554 23456777889999999999999999 4 3779999998763
No 178
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=96.21 E-value=0.0055 Score=56.70 Aligned_cols=65 Identities=22% Similarity=0.132 Sum_probs=46.0
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+. ......+...+ ..+|.+|++++.+......+...+..+...+++. .+++|++|.
T Consensus 73 ~~i~iiDtPGh-~~~~~~~~~~~--~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl 137 (482)
T 1wb1_A 73 YRITLVDAPGH-ADLIRAVVSAA--DIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDN 137 (482)
T ss_dssp EEEEECCCSSH-HHHHHHHHHHT--TSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTS
T ss_pred EEEEEEECCCh-HHHHHHHHHHH--hhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCc
Confidence 78999999964 22222333333 6899999999876644455666666777788887 789999984
No 179
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.21 E-value=0.0021 Score=56.89 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=30.5
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.+..+-|.+|+||||+...||..+. ....+|.+-+.|.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i 64 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDV 64 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 3555559999999999999999998 7777888766554
No 180
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.21 E-value=0.004 Score=52.33 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=31.4
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCC-----CCcEEEEecCCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNE-----SVDVGVLDLDIC 89 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~-----g~~VlliD~D~~ 89 (294)
.+..+.|..|+||||++..|+..|. .. +.+|.++|+|.-
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg--~~~~d~~~~~~~~i~~D~~ 66 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG--QNEVDYRQKQVVILSQDSF 66 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT--GGGSCGGGCSEEEEEGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh--hhcccccCCceEEEecCcc
Confidence 3555668899999999999999887 43 678999999853
No 181
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.20 E-value=0.01 Score=46.68 Aligned_cols=66 Identities=17% Similarity=0.066 Sum_probs=42.0
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc---CCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV---NIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~---~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+...... .....+ ..+|.++++.+.+. .++..+...+..+... ....+.+|.|+.|.
T Consensus 65 ~~~~i~Dt~G~~~~~~-~~~~~~--~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 134 (181)
T 2h17_A 65 TRFLMWDIGGQESLRS-SWNTYY--TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134 (181)
T ss_dssp EEEEEEEESSSGGGTC-GGGGGG--TTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EEEEEEECCCCHhHHH-HHHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCc
Confidence 7889999996422110 011222 57899999988765 4677777766666542 23346788999883
No 182
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.20 E-value=0.0046 Score=51.81 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=31.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+-|.+|+||||+...|+..+. ....+|.+-+.|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 66 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPI 66 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEh
Confidence 444555559999999999999999998 7778888755544
No 183
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.19 E-value=0.00047 Score=61.23 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=29.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
.+..+-|.+|+||||+...||..+. ....+|.+-+.|
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 68 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRL 68 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 3455559999999999999999988 677778775444
No 184
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=96.15 E-value=0.016 Score=54.98 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=42.7
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
|.+.|+|+|+... ....+...+ ..+|.+|+|++........+...+......+++ +-+++|++|.
T Consensus 71 ~~l~liDTPGh~d-F~~ev~~~l--~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl 135 (599)
T 3cb4_D 71 YQLNFIDTPGHVD-FSYEVSRSL--AACEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDL 135 (599)
T ss_dssp EEEEEEECCCCGG-GHHHHHHHH--HHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTS
T ss_pred EEEEEEECCCchH-HHHHHHHHH--HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCc
Confidence 8899999996543 333344444 468999999987653333344444444556776 5688999984
No 185
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.15 E-value=0.03 Score=45.86 Aligned_cols=66 Identities=15% Similarity=0.067 Sum_probs=39.6
Q ss_pred ccEEEEcCCCCCC----hH----HHHHHHHhhcCCCcEEEEecCCchh---hHHHHHHHHHHHHhc--CCCeeEEEeccc
Q psy11347 160 LEYLLIDTPPGTS----DE----HLSLVQYLKGLPDIGAIVVTTPQEV---SLLDVRKEIDFCRKV--NIPIIGVVENMA 226 (294)
Q Consensus 160 yd~IiiD~p~~~~----~~----~~~~~~~l~~~~ad~vliv~~~~~~---s~~~~~~~l~~l~~~--~~~~~~vvvN~~ 226 (294)
+.+.|+|+|+... .. ........ ..+|.+|++.+.+.. .......++..+... +.+ +.+|.|++
T Consensus 76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~p-iilv~nK~ 152 (228)
T 2qu8_A 76 NKYQIIDTPGLLDRAFENRNTIEMTTITALA--HINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS-IVIGFNKI 152 (228)
T ss_dssp EEEEEEECTTTTTSCGGGCCHHHHHHHHHHH--TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCC-EEEEEECG
T ss_pred CeEEEEECCCCcCcccchhhhHHHHHHHHhh--ccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCc-EEEEEeCc
Confidence 6789999996521 11 11111112 577888888876542 223344566666654 444 66899999
Q ss_pred cc
Q psy11347 227 TF 228 (294)
Q Consensus 227 ~~ 228 (294)
|.
T Consensus 153 Dl 154 (228)
T 2qu8_A 153 DK 154 (228)
T ss_dssp GG
T ss_pred cc
Confidence 85
No 186
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.14 E-value=0.082 Score=40.84 Aligned_cols=65 Identities=11% Similarity=-0.010 Sum_probs=40.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHh-------cCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRK-------VNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~-------~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+.... ....... ...+|.++++.+.+. .+...+..++..+.. .+.+ +.+|.|+.|.
T Consensus 56 ~~~~i~Dt~G~~~~--~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl 128 (177)
T 1wms_A 56 VTMQIWDTAGQERF--RSLRTPF-YRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDI 128 (177)
T ss_dssp EEEEEEECCCCGGG--HHHHGGG-GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTC
T ss_pred EEEEEEeCCCchhh--hhhHHHH-HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCc-EEEEEECCcc
Confidence 67999999964322 1122111 157898888876654 556666666665543 2333 5689999984
No 187
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.12 E-value=0.016 Score=61.02 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=44.9
Q ss_pred cChHHHHhhhc---cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 34 PGIELVKSHLS---NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 34 ~~~~~i~~~~~---~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
..++.|...+. -....+.++.|..|+||||++.++|..++ ..|.+|+++++....
T Consensus 715 TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa--~~g~~VlyiS~Ees~ 772 (1706)
T 3cmw_A 715 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHAL 772 (1706)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCC
T ss_pred cCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHH--HcCCCeEEEeccchH
Confidence 45666776665 34566777789999999999999999999 789999999997653
No 188
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.12 E-value=0.005 Score=48.64 Aligned_cols=37 Identities=30% Similarity=0.355 Sum_probs=30.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
+.++.|..|+||||++..|+..|. ..|..+..+|.|.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~--~~g~~~i~~d~~~ 43 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLV--CHGIPCYTLDGDN 43 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh--hCCCcEEEECChH
Confidence 444568899999999999999998 6788888887654
No 189
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.12 E-value=0.0016 Score=53.62 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=27.8
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
+..+-|.+|+||||+...|+..+. ....+|.+-+.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~ 72 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVP 72 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEE
Confidence 444458999999999999999988 666777764433
No 190
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.11 E-value=0.038 Score=42.78 Aligned_cols=89 Identities=24% Similarity=0.226 Sum_probs=50.7
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc--CCCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV--NIPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~--~~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+...... .....+ ..+|.++++.+.+. .++.....++..+... ....+.+|.|+.|.. ..
T Consensus 63 ~~~~~~Dt~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~ 134 (179)
T 2y8e_A 63 VRLQLWDTAGQERFRS-LIPSYI--RDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS-----DK 134 (179)
T ss_dssp EEEEEEEECCSGGGGG-GSHHHH--HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG-----GG
T ss_pred EEEEEEECCCcHHHHH-HHHHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc-----cc
Confidence 6789999996432111 111122 46898998887754 5666666666666543 122467899999842 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+ .......+.+..+.+++
T Consensus 135 ~~~---~~~~~~~~~~~~~~~~~ 154 (179)
T 2y8e_A 135 RQV---STEEGERKAKELNVMFI 154 (179)
T ss_dssp CCS---CHHHHHHHHHHHTCEEE
T ss_pred CcC---CHHHHHHHHHHcCCeEE
Confidence 111 12344555556666554
No 191
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.10 E-value=0.0099 Score=55.57 Aligned_cols=51 Identities=10% Similarity=0.204 Sum_probs=38.2
Q ss_pred hHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 36 IELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 36 ~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.+.+...++. ....+..+.|..|+||||++..++..+. ..|.+++++....
T Consensus 267 ~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~--~~G~~vi~~~~ee 319 (525)
T 1tf7_A 267 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC--ANKERAILFAYEE 319 (525)
T ss_dssp CHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEESSS
T ss_pred hHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--hCCCCEEEEEEeC
Confidence 3445544332 3455666779999999999999999999 7788998887653
No 192
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.09 E-value=0.021 Score=45.68 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=42.3
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc---CCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV---NIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~---~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+...... .....+ ..+|.+|++.+.+ ..++..+..++..+... +.+ +.+|.|+.|.
T Consensus 77 ~~l~i~Dt~G~~~~~~-~~~~~~--~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl 145 (199)
T 2p5s_A 77 TVLQLWDTAGQERFRS-IAKSYF--RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP-IMLVGNKADI 145 (199)
T ss_dssp EEEEEEECTTCTTCHH-HHHHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CC-EEEEEECGGG
T ss_pred EEEEEEECCCCcchhh-hHHHHH--hhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccc
Confidence 6789999996543221 122222 4689999988765 46666677777766543 344 6789999984
No 193
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.08 E-value=0.0077 Score=46.96 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=38.9
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
..+.|+|+|+....... ....+ ..+|.++++.+.+..........+..+...+.+ +.+|.|+.|.
T Consensus 55 ~~~~l~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-~ilv~nK~Dl 119 (178)
T 2lkc_A 55 KKITFLDTPGHEAFTTM-RARGA--QVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVAINKMDK 119 (178)
T ss_dssp EEEEESCCCSSSSSSCS-CCSSC--CCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCC-EEEEEETTTS
T ss_pred ceEEEEECCCCHHHHHH-HHHHH--hhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCC-EEEEEECccC
Confidence 56778888853211000 00111 468888888876654444455556666666666 6689999883
No 194
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.04 E-value=0.0013 Score=55.55 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=27.7
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
.+..+-|.+|+||||+...|+..+. .. .+|.+-+.+
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~ 62 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQP 62 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEE
Confidence 3455558999999999999999998 66 677765443
No 195
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.04 E-value=0.015 Score=47.16 Aligned_cols=67 Identities=19% Similarity=0.091 Sum_probs=37.6
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhc--CCCcEEEEecCCc--hhhHHHHHHHHHHHHh-------cCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKG--LPDIGAIVVTTPQ--EVSLLDVRKEIDFCRK-------VNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~--~~ad~vliv~~~~--~~s~~~~~~~l~~l~~-------~~~~~~~vvvN~~~~ 228 (294)
+++.|+|+|+...... .....+.. ..+|.+|++.+.+ ..++......+..+.. .+.+ +.+|.|+.|.
T Consensus 55 ~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 132 (218)
T 1nrj_B 55 SGVTLVDFPGHVKLRY-KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSEL 132 (218)
T ss_dssp SSCEEEECCCCGGGTH-HHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTS
T ss_pred ceEEEEECCCcHHHHH-HHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCC-EEEEEEchHh
Confidence 7899999996432111 11111100 1278888888765 2455555544444422 2344 6789999984
No 196
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.04 E-value=0.007 Score=52.02 Aligned_cols=41 Identities=27% Similarity=0.360 Sum_probs=34.4
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCC
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDI 88 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~ 88 (294)
....+.++.|.+|+||||++.++|..++ .. |.+|++++.+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEE 74 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcC
Confidence 3455777779999999999999999998 54 77999998875
No 197
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.03 E-value=0.033 Score=44.05 Aligned_cols=89 Identities=15% Similarity=0.174 Sum_probs=52.4
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+...... .....+ ..+|.+|++.+.+. .++..+..++..+.... ...+.+|.|+.|.. ..
T Consensus 70 ~~~~i~Dt~G~~~~~~-~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-----~~ 141 (191)
T 2a5j_A 70 IKLQIWDTAGQESFRS-ITRSYY--RGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE-----SR 141 (191)
T ss_dssp EEEEEECCTTGGGTSC-CCHHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GG
T ss_pred EEEEEEECCCchhhhh-hHHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC-----Cc
Confidence 6789999995321100 011222 57899999988754 66777777777776532 22466889999842 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+ ..+..+++.+..+.+++
T Consensus 142 ~~v---~~~~~~~~~~~~~~~~~ 161 (191)
T 2a5j_A 142 RDV---KREEGEAFAREHGLIFM 161 (191)
T ss_dssp CCS---CHHHHHHHHHHHTCEEE
T ss_pred ccc---CHHHHHHHHHHcCCEEE
Confidence 111 13345666666666554
No 198
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.03 E-value=0.0063 Score=53.56 Aligned_cols=55 Identities=16% Similarity=0.302 Sum_probs=44.9
Q ss_pred CcChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 33 DPGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 33 ~~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
...++.|...+.. ...-+.++.+..|+||||++.++|..++ ..|.+|+++.+...
T Consensus 30 ~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a--~~g~~Vl~fSlEms 85 (338)
T 4a1f_A 30 PTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL--NDDRGVAVFSLEMS 85 (338)
T ss_dssp CCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH--HTTCEEEEEESSSC
T ss_pred cCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCCC
Confidence 3456667766653 3556888889999999999999999999 78999999999764
No 199
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.98 E-value=0.004 Score=49.02 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=27.7
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
|+..+.+++|-.|+||||++..||..|. . ..+.++.|
T Consensus 1 m~~~~i~l~G~~GsGKST~a~~La~~l~--~---~~~~~~~D 37 (178)
T 1qhx_A 1 MTTRMIILNGGSSAGKSGIVRCLQSVLP--E---PWLAFGVD 37 (178)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHSS--S---CEEEEEHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcC--C---CeEEeccc
Confidence 3445677889999999999999998876 3 34445554
No 200
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.97 E-value=0.011 Score=48.04 Aligned_cols=40 Identities=35% Similarity=0.512 Sum_probs=32.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...+..+.|.+|+||||++..|+..+. ..|.++..+..|.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~--~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS--AQGLPAEVVPMDG 60 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH--HTTCCEEEEESGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCceEEEecCC
Confidence 445556669999999999999999998 5576788887764
No 201
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.97 E-value=0.038 Score=43.53 Aligned_cols=66 Identities=15% Similarity=0.045 Sum_probs=42.3
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc---CCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV---NIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~---~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+....... ....+ ..+|.+|++.+.+. .++......+..+... ....+.+|.|+.|.
T Consensus 60 ~~~~i~Dt~G~~~~~~~-~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (187)
T 1zj6_A 60 TRFLMWDIGGQESLRSS-WNTYY--TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129 (187)
T ss_dssp EEEEEEECCC----CGG-GHHHH--TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred EEEEEEECCCCHhHHHH-HHHHh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCC
Confidence 78999999964321111 11222 57999999988765 4677777777777543 23346789999884
No 202
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.96 E-value=0.0094 Score=48.92 Aligned_cols=50 Identities=16% Similarity=0.072 Sum_probs=36.9
Q ss_pred HHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 37 ELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 37 ~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
..++...........++.|..|+||||++..++..+. ..+.++.+++++.
T Consensus 41 ~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~~~ 90 (242)
T 3bos_A 41 GALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN--ELERRSFYIPLGI 90 (242)
T ss_dssp HHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGG
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEHHH
Confidence 3344333332344566678899999999999999999 7789999998743
No 203
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.95 E-value=0.0082 Score=48.31 Aligned_cols=36 Identities=33% Similarity=0.383 Sum_probs=31.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
...++.|..|+||||++..++..+. ..+.+|+++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEh
Confidence 4556668999999999999999999 78999988866
No 204
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=95.93 E-value=0.018 Score=53.02 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=42.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhH-------HHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSL-------LDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~-------~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+... ..-.+...+ ..+|.+|+|++.+...+ ..+...+..+...+++.+.+++|++|.
T Consensus 121 ~~~~iiDtPGh~~-f~~~~~~~~--~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 121 RRFSLLDAPGHKG-YVTNMINGA--SQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDE 193 (467)
T ss_dssp EEEEECCCCC------------T--TSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTS
T ss_pred eEEEEEECCCcHH-HHHHHHhhc--ccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccC
Confidence 7899999996532 112223333 57999999998876543 245566666677788767799999984
No 205
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.93 E-value=0.24 Score=37.57 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=40.3
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc----CCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV----NIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+......+ ....+ ..+|.++++.+.+ ..++..+..++..+... +.+ +.+|.|+.|.
T Consensus 51 ~~~~l~D~~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 120 (167)
T 1c1y_A 51 CMLEILDTAGTEQFTAM-RDLYM--KNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDL 120 (167)
T ss_dssp EEEEEEEECSSCSSTTH-HHHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTC
T ss_pred EEEEEEECCChHHHHHH-HHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc-EEEEEECccc
Confidence 77899999964322111 11122 3578888888654 45666666666665432 444 5689999984
No 206
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.93 E-value=0.14 Score=39.57 Aligned_cols=65 Identities=12% Similarity=-0.098 Sum_probs=37.9
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHh-------cCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRK-------VNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~-------~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+.... ..... .....+|.+|++.+.+. .++..+..++..+.. .+. .+.+|.|+.|.
T Consensus 58 ~~~~l~Dt~G~~~~--~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl 130 (182)
T 1ky3_A 58 ATMQVWDTAGQERF--QSLGV-AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETF-PFVILGNKIDA 130 (182)
T ss_dssp EEEEEECCC-------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTC-CEEEEEECTTS
T ss_pred EEEEEEECCCChHh--hhhhH-HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCC-cEEEEEECCcc
Confidence 78899999963321 11111 11157899998887654 566666666666543 233 36789999884
No 207
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=95.92 E-value=0.011 Score=55.57 Aligned_cols=86 Identities=19% Similarity=0.111 Sum_probs=66.7
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCCCCCcc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~~~~~i 239 (294)
|.+=|||||+..+ ....+...| ..+|.+|+|+++...-...+..+++.+.+.+++. .+++|++|. .
T Consensus 100 ~~iNlIDTPGHvD-F~~Ev~raL--~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~-i~fINK~Dr------~---- 165 (548)
T 3vqt_A 100 RVVNLLDTPGHQD-FSEDTYRVL--TAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPV-MTFVNKMDR------E---- 165 (548)
T ss_dssp EEEEEECCCCGGG-CSHHHHHHH--HSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCE-EEEEECTTS------C----
T ss_pred EEEEEEeCCCcHH-HHHHHHHHH--HhcCceEEEeecCCCcccccHHHHHHHHHhCCce-EEEEecccc------h----
Confidence 8999999996543 223344444 6899999999999988899999999999999995 488999984 2
Q ss_pred CCCCchhHHHHHhhcCCcee
Q psy11347 240 FPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 240 ~~~~~~~~~~~~~~~g~~~l 259 (294)
..++...++++.+.++..+.
T Consensus 166 ~ad~~~~~~~i~~~l~~~~~ 185 (548)
T 3vqt_A 166 ALHPLDVMADIEQHLQIECA 185 (548)
T ss_dssp CCCHHHHHHHHHHHHTSEEE
T ss_pred hcchhHhhhhhhhhcCCceE
Confidence 33456677888888876554
No 208
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.92 E-value=0.029 Score=45.94 Aligned_cols=38 Identities=18% Similarity=-0.050 Sum_probs=31.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
...|-++.|.-|+||||.....+..+. ..|++|+++-.
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~--~~g~kvli~kp 64 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGI--YAKQKVVVFKP 64 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHH--HTTCCEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH--HcCCceEEEEe
Confidence 356777888899999998888888888 78999999854
No 209
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=95.91 E-value=0.00083 Score=63.84 Aligned_cols=66 Identities=17% Similarity=0.057 Sum_probs=35.4
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhh-------HHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVS-------LLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s-------~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+.... ...+...+ ..+|.+|+|++.+... ...+...+..+...+++.+.+++|+++.
T Consensus 255 ~~i~iiDTPGh~~f-~~~~~~~~--~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl 327 (592)
T 3mca_A 255 KIYEIGDAPGHRDF-ISGMIAGA--SSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDL 327 (592)
T ss_dssp ----CCEEESSSEE-EEECCC---------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGG
T ss_pred eEEEEEECCChHHH-HHHHHHHH--hhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 78999999964310 00011111 4688888888776421 3455666677777888767789999984
No 210
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.89 E-value=0.026 Score=60.25 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=47.0
Q ss_pred CcChHHHHhhhc---cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 33 DPGIELVKSHLS---NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 33 ~~~~~~i~~~~~---~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
....+.|...+. -....+..+.|..|+||||++.++|...+ ..|.+|+++|+....
T Consensus 365 ~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~ 423 (2050)
T 3cmu_A 365 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHAL 423 (2050)
T ss_dssp CCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCC
T ss_pred eCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCH
Confidence 356778888886 34666888889999999999999999999 889999999997643
No 211
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.89 E-value=0.0072 Score=55.32 Aligned_cols=56 Identities=13% Similarity=0.262 Sum_probs=45.1
Q ss_pred CcChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 33 DPGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 33 ~~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
...++.|...+.. ....+.++.|..|+||||++.++|...+ ..|.+|+++.+....
T Consensus 181 ~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a--~~g~~vl~fSlEms~ 237 (444)
T 3bgw_A 181 PSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS--DNDDVVNLHSLEMGK 237 (444)
T ss_dssp CCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHH--HTTCEEEEECSSSCT
T ss_pred CCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHH--HcCCEEEEEECCCCH
Confidence 3456666666643 3566888899999999999999999999 679999999998654
No 212
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.89 E-value=0.064 Score=42.56 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=51.9
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHh----cCCCeeEEEeccccccCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRK----VNIPIIGVVENMATFVCPKCT 234 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~~~~~~~ 234 (294)
+.+.|+|+|+... .. .....+ ..+|.++++.+.+. .++..+..++..+.. .+.+ +.+|.|++|..
T Consensus 76 ~~~~l~Dt~G~~~-~~-~~~~~~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~----- 145 (196)
T 2atv_A 76 VSMEILDTAGQED-TI-QREGHM--RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVT-LILVGNKADLD----- 145 (196)
T ss_dssp EEEEEEECCCCCC-CH-HHHHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGG-----
T ss_pred EEEEEEECCCCCc-cc-chhhhh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCc-EEEEEECcccc-----
Confidence 7889999996544 11 122222 46898998887754 666666666666653 2344 56899999852
Q ss_pred CCCccCCCCchhHHHHHhhcCCcee
Q psy11347 235 KPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 235 ~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
....+ ..+...++.+..+.+++
T Consensus 146 ~~~~v---~~~~~~~~~~~~~~~~~ 167 (196)
T 2atv_A 146 HSRQV---STEEGEKLATELACAFY 167 (196)
T ss_dssp GGCCS---CHHHHHHHHHHHTSEEE
T ss_pred ccccc---CHHHHHHHHHHhCCeEE
Confidence 11111 13345566666666554
No 213
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=95.87 E-value=0.021 Score=55.23 Aligned_cols=66 Identities=11% Similarity=0.074 Sum_probs=39.8
Q ss_pred ccEEEEcCCCCCCh--HHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSD--EHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~--~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+++.|+|+|+-... ..-.+...+ ..+|.+|+|++.+. .+......+.+.+...+.+ +.+|+|++|.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i--~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl 242 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYV--NNCHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQ 242 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHH--HSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHH--HhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECccc
Confidence 58999999952210 011122333 46999999998754 3333333333445555555 6789999984
No 214
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.86 E-value=0.011 Score=46.44 Aligned_cols=39 Identities=28% Similarity=0.310 Sum_probs=29.1
Q ss_pred ChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 35 GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 35 ~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
....+.+.+........++.|..|+||||++..++..+.
T Consensus 30 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 30 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp HHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 445555555554444456779999999999999999987
No 215
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.86 E-value=0.089 Score=40.99 Aligned_cols=88 Identities=15% Similarity=0.259 Sum_probs=50.7
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHh----cCCCeeEEEeccccccCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRK----VNIPIIGVVENMATFVCPKCT 234 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~~~~~~~ 234 (294)
+.+.|+|+|+......+ ....+ ..+|.++++.+.+. .++..+..++..+.. .+.+ +.+|.|+.|..
T Consensus 66 ~~l~i~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~----- 136 (183)
T 3kkq_A 66 AILDVLDTAGQEEFSAM-REQYM--RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP-MILVANKVDLM----- 136 (183)
T ss_dssp EEEEEEECCSCGGGCSS-HHHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCS-----
T ss_pred EEEEEEECCCchhhHHH-HHHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCch-----
Confidence 55677999963211111 11112 35888888887654 566666666666543 3444 56889999842
Q ss_pred CCCccCCCCchhHHHHHhhcCCcee
Q psy11347 235 KPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 235 ~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
....+ ..+..+++.+.++.+++
T Consensus 137 ~~~~v---~~~~~~~~~~~~~~~~~ 158 (183)
T 3kkq_A 137 HLRKV---TRDQGKEMATKYNIPYI 158 (183)
T ss_dssp TTCCS---CHHHHHHHHHHHTCCEE
T ss_pred hccCc---CHHHHHHHHHHhCCeEE
Confidence 11122 23456677777777665
No 216
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.059 Score=43.87 Aligned_cols=89 Identities=13% Similarity=0.171 Sum_probs=51.6
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+......+ ....+ ..+|.+|+|.+.+. .++..+..++..+.... ...+.+|.|+.|.. ..
T Consensus 62 ~~~~i~Dt~G~~~~~~~-~~~~~--~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-----~~ 133 (223)
T 3cpj_B 62 IKAQIWDTAGQERYRAI-TSAYY--RGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA-----HL 133 (223)
T ss_dssp EEEEEECCTTTTTTTCC-CGGGT--TTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG-----GG
T ss_pred EEEEEEECCCccchhhh-HHHHh--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-----cc
Confidence 67899999964321100 11112 57898998887654 66777777777776542 22466888999842 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+. .+...++.+..+++++
T Consensus 134 ~~v~---~~~~~~~~~~~~~~~~ 153 (223)
T 3cpj_B 134 RAVP---TEESKTFAQENQLLFT 153 (223)
T ss_dssp CCSC---HHHHHHHHHHTTCEEE
T ss_pred cccC---HHHHHHHHHHcCCEEE
Confidence 1111 2345566666676554
No 217
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.83 E-value=0.033 Score=44.82 Aligned_cols=46 Identities=20% Similarity=0.062 Sum_probs=33.0
Q ss_pred hhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 41 SHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 41 ~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
+....++..+.|+.|.-|+||||-....+..+. ..+++|+++....
T Consensus 13 ~~~~~~~g~l~fiyG~MgsGKTt~Ll~~i~n~~--~~~~kvl~~kp~~ 58 (195)
T 1w4r_A 13 PRGSKTRGQIQVILGPMFSGKSTELMRRVRRFQ--IAQYKCLVIKYAK 58 (195)
T ss_dssp ------CCEEEEEEECTTSCHHHHHHHHHHHHH--HTTCCEEEEEETT
T ss_pred ccCCCCceEEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEcccc
Confidence 334444556888889999999988888888777 7899999997543
No 218
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.81 E-value=0.039 Score=42.40 Aligned_cols=66 Identities=17% Similarity=0.034 Sum_probs=41.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc---CCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV---NIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~---~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+...... .....+ ..+|.++++.+.+. .++......+..+... ....+.+|.|+.|.
T Consensus 51 ~~~~~~Dt~G~~~~~~-~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 120 (171)
T 1upt_A 51 LKFQVWDLGGLTSIRP-YWRCYY--SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 120 (171)
T ss_dssp EEEEEEEECCCGGGGG-GGGGGC--TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EEEEEEECCCChhhhH-HHHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCC
Confidence 7889999996432111 111122 57899999987654 4666666666655432 22346789999884
No 219
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.81 E-value=0.025 Score=59.52 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=46.7
Q ss_pred CcChHHHHhhhc---cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 33 DPGIELVKSHLS---NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 33 ~~~~~~i~~~~~---~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
...++.|...+. -....+..+.|..|+||||++.++|...+ ..|.+|+++|++...
T Consensus 365 sTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~--~~G~~vlyis~E~s~ 423 (1706)
T 3cmw_A 365 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHAL 423 (1706)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCC
T ss_pred ccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEccCch
Confidence 355677887776 34566788889999999999999999999 789999999998754
No 220
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.80 E-value=0.0088 Score=48.66 Aligned_cols=50 Identities=28% Similarity=0.300 Sum_probs=36.4
Q ss_pred HHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 37 ELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 37 ~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
+.-|..+......+.++.|..|+||||++..|+..|. ...|.++.++|.|
T Consensus 14 ~~~r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-~~~g~~~~~~~~d 63 (211)
T 1m7g_A 14 RSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLV-RDRRVHAYRLDGD 63 (211)
T ss_dssp HHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH-HHHCCCEEEECHH
T ss_pred HHHhhcccCCCCCEEEEECCCCCCHHHHHHHHHHHhc-cccCCcEEEECCh
Confidence 3344455555555666668899999999999999986 1357788888855
No 221
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.79 E-value=0.013 Score=47.25 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=28.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
..+.++.|-.|+||||++..|+..+. ..| +|...+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~--~~g-~~~~~~~ 39 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE--LKR-DVYLTEW 39 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT--TTS-CEEEEET
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh--hcC-CEEEecC
Confidence 45666778899999999999999999 677 7755443
No 222
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.78 E-value=0.013 Score=55.46 Aligned_cols=40 Identities=30% Similarity=0.430 Sum_probs=31.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
+..+++ -|.+|+||||+...|+..+. ....+|.+-+.|..
T Consensus 369 G~~~~i-vG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~~ 408 (582)
T 3b5x_A 369 GKTVAL-VGRSGSGKSTIANLFTRFYD--VDSGSICLDGHDVR 408 (582)
T ss_pred CCEEEE-ECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEhh
Confidence 344444 48899999999999999998 77788888666553
No 223
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.77 E-value=0.0099 Score=48.17 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=29.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
+.+|+ +.|..|+||||++..|+..+. . ++.+++.|..
T Consensus 6 ~~~i~-i~G~~GsGKSTl~~~l~~~~~--~---~i~~v~~d~~ 42 (211)
T 3asz_A 6 PFVIG-IAGGTASGKTTLAQALARTLG--E---RVALLPMDHY 42 (211)
T ss_dssp CEEEE-EEESTTSSHHHHHHHHHHHHG--G---GEEEEEGGGC
T ss_pred cEEEE-EECCCCCCHHHHHHHHHHHhC--C---CeEEEecCcc
Confidence 34445 457889999999999999988 4 7889988864
No 224
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.73 E-value=0.014 Score=45.79 Aligned_cols=39 Identities=28% Similarity=0.292 Sum_probs=29.1
Q ss_pred ChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 35 GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 35 ~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
....+.+.+........++.|..|+||||++..++..+.
T Consensus 30 ~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 30 EIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp HHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345555555554444557789999999999999999998
No 225
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.71 E-value=0.16 Score=39.88 Aligned_cols=85 Identities=15% Similarity=0.180 Sum_probs=51.3
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT 234 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~ 234 (294)
+.+.|+|+++..... .. ..+|.++++.+.+. .++..+..++..+... +.+ +.+|.|+.|... .
T Consensus 67 ~~l~i~Dt~G~~~~~---~~-----~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~---~ 134 (184)
T 3ihw_A 67 YLLLIRDEGGPPELQ---FA-----AWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP-MVLVGTQDAISA---A 134 (184)
T ss_dssp EEEEEEECSSSCCHH---HH-----HHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSC-EEEEEECTTCBT---T
T ss_pred EEEEEEECCCChhhh---ee-----cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccc---c
Confidence 678889999654422 22 35788888876654 6677777788887654 333 568889987420 0
Q ss_pred CCCccCCCCchhHHHHHhhcC-Ccee
Q psy11347 235 KPSEIFPKDSGGAEKMCAELS-VPFL 259 (294)
Q Consensus 235 ~~~~i~~~~~~~~~~~~~~~g-~~~l 259 (294)
....+ ..+...++.+.++ .+++
T Consensus 135 ~~~~v---~~~~~~~~~~~~~~~~~~ 157 (184)
T 3ihw_A 135 NPRVI---DDSRARKLSTDLKRCTYY 157 (184)
T ss_dssp BCCCS---CHHHHHHHHHHTTTCEEE
T ss_pred ccccc---CHHHHHHHHHHcCCCeEE
Confidence 01111 2344566666665 4444
No 226
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.71 E-value=0.0077 Score=47.60 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=29.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
..+.++.|..|+||||++..++..+. ...|.+|++++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~-~~~g~~~~~~~~ 75 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY-EKKGIRGYFFDT 75 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH-HHSCCCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH-HHcCCeEEEEEH
Confidence 45566679999999999999999986 135777777654
No 227
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.71 E-value=0.041 Score=46.32 Aligned_cols=89 Identities=13% Similarity=-0.036 Sum_probs=52.5
Q ss_pred ccEEEEcCCCCCChH-----HHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCC
Q psy11347 160 LEYLLIDTPPGTSDE-----HLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCT 234 (294)
Q Consensus 160 yd~IiiD~p~~~~~~-----~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~ 234 (294)
+.+.|+|+|+..... .......+....+|.+++|++.+.. .....+...+.+.+.+ +.+++||+|..
T Consensus 52 ~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~p-vilv~NK~Dl~----- 123 (258)
T 3a1s_A 52 YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKK-VILAMTAIDEA----- 123 (258)
T ss_dssp EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCC-EEEEEECHHHH-----
T ss_pred eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCC-EEEEEECcCCC-----
Confidence 789999999643211 1111122222478999999887653 2333455666666777 56899999842
Q ss_pred CCCccCCCCchhHHHHHhhcCCceee
Q psy11347 235 KPSEIFPKDSGGAEKMCAELSVPFLG 260 (294)
Q Consensus 235 ~~~~i~~~~~~~~~~~~~~~g~~~l~ 260 (294)
....+. ...+++.+.+|++++.
T Consensus 124 ~~~~i~----~~~~~l~~~lg~~vi~ 145 (258)
T 3a1s_A 124 KKTGMK----IDRYELQKHLGIPVVF 145 (258)
T ss_dssp HHTTCC----BCHHHHHHHHCSCEEE
T ss_pred CccchH----HHHHHHHHHcCCCEEE
Confidence 111221 1256677777877764
No 228
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.70 E-value=0.0069 Score=55.58 Aligned_cols=66 Identities=12% Similarity=-0.028 Sum_probs=37.9
Q ss_pred ccEEEEcCCCCC------ChHHHH-HHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGT------SDEHLS-LVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~------~~~~~~-~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
..+.|+|+|+-. ...... ....+ ..+|.+|++++....-...-..+.+.+++.+.+ +.+|+|+++.
T Consensus 71 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~p-vilV~NK~D~ 143 (456)
T 4dcu_A 71 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM--DEADVIIFMVNGREGVTAADEEVAKILYRTKKP-VVLAVNKLDN 143 (456)
T ss_dssp SCCEEECCCC------CCHHHHHHHHHHHH--HHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSC-EEEEEECC--
T ss_pred ceEEEEECCCCCCcchHHHHHHHHHHHhhH--hhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCC-EEEEEECccc
Confidence 678999999622 111111 11222 468989988876542223334566666666666 5588999884
No 229
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.69 E-value=0.011 Score=47.83 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=28.6
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD 85 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD 85 (294)
.+.++.|-.|+||||++..|+..|. ..+.+|..+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~--~~~~~v~~~~ 44 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC--AAGHRAELLR 44 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEee
Confidence 4555667889999999999999999 7888885554
No 230
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.69 E-value=0.04 Score=44.09 Aligned_cols=65 Identities=20% Similarity=0.134 Sum_probs=41.0
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHH-HHHHHHHHhc--CCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDV-RKEIDFCRKV--NIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~-~~~l~~l~~~--~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+......+ ....+ ..+|.+|++.+.+. .++... ..++..+... +.+ +.+|.|++|.
T Consensus 73 ~~l~i~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 141 (201)
T 2gco_A 73 VELALWDTAGQEDYDRL-RPLSY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDL 141 (201)
T ss_dssp EEEEEECCCCSGGGTTT-GGGGC--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGG
T ss_pred EEEEEEECCCchhHHHH-HHHhc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHh
Confidence 68899999964221100 11112 57899998876554 566666 5666666654 445 5699999984
No 231
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.66 E-value=0.0057 Score=51.93 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=24.2
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD 85 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD 85 (294)
+..+-|.+|+||||+...|+..+. . ..+|.+-+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~p--~-~G~I~~~g 64 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLLP--Y-SGNIFING 64 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC--C-EEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--C-CcEEEECC
Confidence 445558899999999999998774 3 34566543
No 232
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.65 E-value=0.015 Score=50.70 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=33.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
...|..+.|.+|+||||++..|+..+.....+.+|.++..|..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 3446666699999999999999999872124678999999864
No 233
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.64 E-value=0.13 Score=40.49 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=50.6
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc-----CCCeeEEEeccccccCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV-----NIPIIGVVENMATFVCPKC 233 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~-----~~~~~~vvvN~~~~~~~~~ 233 (294)
+.+.|+|+|+......+ ....+ ..+|.++++.+.+. .++..+..++..+... +.+ +.+|.|+.|..
T Consensus 56 ~~~~l~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~---- 127 (199)
T 2gf0_A 56 CTLQITDTTGSHQFPAM-QRLSI--SKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDET---- 127 (199)
T ss_dssp EEEEEEECCGGGSCHHH-HHHHH--HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCS----
T ss_pred EEEEEEeCCChHHhHHH-HHHhh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCC----
Confidence 68999999964332211 11222 36888888887654 5666666665555432 344 67899999842
Q ss_pred CCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 234 TKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 234 ~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..++ .......+.+.++.+++
T Consensus 128 --~~~~---~~~~~~~~~~~~~~~~~ 148 (199)
T 2gf0_A 128 --QREV---DTREAQAVAQEWKCAFM 148 (199)
T ss_dssp --SCSS---CHHHHHHHHHHHTCEEE
T ss_pred --cccc---CHHHHHHHHHHhCCeEE
Confidence 1111 13345566666676555
No 234
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.61 E-value=0.054 Score=42.91 Aligned_cols=65 Identities=14% Similarity=0.222 Sum_probs=41.6
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHh----cCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRK----VNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~ 228 (294)
+.+.++|+|+......+ ....+ ..+|.++++.+.+. .++......+..+.. .+.+ +.+|.|+.|.
T Consensus 67 ~~~~i~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 136 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARRL-WKDYF--PEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP-FVILGNKIDA 136 (190)
T ss_dssp EEEEEEECCCSGGGTTS-GGGGC--TTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTS
T ss_pred EEEEEEECCCCHHHHHH-HHHHH--hcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC-EEEEEECCCC
Confidence 67889999954321110 11112 57899999988765 567777777766643 2344 6789999884
No 235
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.61 E-value=0.19 Score=39.12 Aligned_cols=87 Identities=18% Similarity=0.289 Sum_probs=50.2
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT 234 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~ 234 (294)
+.+.|+|+|+......+ ....+ ..+|.++++.+.+. .++.....++..+... +.+ +.+|.|+.|..
T Consensus 52 ~~~~i~Dt~G~~~~~~~-~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~----- 122 (189)
T 4dsu_A 52 CLLDILDTAGQEEYSAM-RDQYM--RTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP-MVLVGNKCDLP----- 122 (189)
T ss_dssp EEEEEEECCCC---CTT-HHHHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTSS-----
T ss_pred EEEEEEECCCcHHHHHH-HHHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccCc-----
Confidence 66888999963321111 11112 35788887776654 5666666666666542 334 66889999842
Q ss_pred CCCccCCCCchhHHHHHhhcCCcee
Q psy11347 235 KPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 235 ~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
... ...+..+++.+..+.+++
T Consensus 123 -~~~---~~~~~~~~~~~~~~~~~~ 143 (189)
T 4dsu_A 123 -SRT---VDTKQAQDLARSYGIPFI 143 (189)
T ss_dssp -SCS---SCHHHHHHHHHHHTCCEE
T ss_pred -ccc---cCHHHHHHHHHHcCCeEE
Confidence 111 123456677777777665
No 236
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.56 E-value=0.023 Score=50.09 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=42.9
Q ss_pred CcChHHHHhhhc--cCceEEEEEecCCCchHHHHHHHHHHHHhhcC------CCCcEEEEecCCC
Q psy11347 33 DPGIELVKSHLS--NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSN------ESVDVGVLDLDIC 89 (294)
Q Consensus 33 ~~~~~~i~~~~~--~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~------~g~~VlliD~D~~ 89 (294)
....+.|...+. -....+..+.|..|+||||++.++|.... . .+.+|+++|++..
T Consensus 105 ~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~--~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 105 TTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQ--LPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp CCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTT--SCBTTTBCCCEEEEEESSSC
T ss_pred ecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHh--cccccCCCCCeEEEEECCCC
Confidence 345667777764 23566788889999999999999999865 4 5789999999763
No 237
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.53 E-value=0.014 Score=54.19 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=42.1
Q ss_pred ChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCCC
Q psy11347 35 GIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDIC 89 (294)
Q Consensus 35 ~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~~ 89 (294)
.++.|...+.. ....+.++.|..|+||||++.++|..++ .. |.+|+++++...
T Consensus 228 G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a--~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 228 GCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWG--TAMGKKVGLAMLEES 282 (503)
T ss_dssp SCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHT--TTSCCCEEEEESSSC
T ss_pred chhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHH--HhcCCcEEEEeccCC
Confidence 34555555543 3456788889999999999999999999 66 899999999764
No 238
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.52 E-value=0.011 Score=46.92 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=26.1
Q ss_pred cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
.++..+.++.|..|+||||++..|+..+. ..++|.|
T Consensus 3 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~-------~~~i~~d 38 (194)
T 1qf9_A 3 KSKPNVVFVLGGPGSGKGTQCANIVRDFG-------WVHLSAG 38 (194)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHHHHC-------CEEEEHH
T ss_pred CCcCcEEEEECCCCCCHHHHHHHHHHHhC-------CeEeeHH
Confidence 33444556668899999999999988776 2456664
No 239
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.50 E-value=0.0084 Score=46.81 Aligned_cols=34 Identities=29% Similarity=0.501 Sum_probs=25.3
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
||+.|++. |-.|+||||++..||..|. . .++|.|
T Consensus 1 m~~~I~l~-G~~GsGKsT~a~~La~~lg--~-----~~id~d 34 (173)
T 1e6c_A 1 MTEPIFMV-GARGCGMTTVGRELARALG--Y-----EFVDTD 34 (173)
T ss_dssp CCCCEEEE-SCTTSSHHHHHHHHHHHHT--C-----EEEEHH
T ss_pred CCceEEEE-CCCCCCHHHHHHHHHHHhC--C-----cEEccc
Confidence 34555554 7789999999999999877 2 366765
No 240
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=95.49 E-value=0.11 Score=48.47 Aligned_cols=86 Identities=9% Similarity=-0.040 Sum_probs=49.9
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKPS 237 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~~ 237 (294)
+.+.|+|+|+.-....+ ....+ ..+|.+|+|.+.+.. .....++..+...+ .+ +.+|.|++|.. ...
T Consensus 98 ~~~~i~Dt~G~e~~~~~-~~~~l--~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~p-vilV~NK~Dl~-----~~~ 166 (535)
T 3dpu_A 98 CLFHFWDFGGQEIMHAS-HQFFM--TRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSP-VIVVMNKIDEN-----PSY 166 (535)
T ss_dssp CEEEEECCCSCCTTTTT-CHHHH--HSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCC-EEEEECCTTTC-----TTC
T ss_pred EEEEEEECCcHHHHHHH-HHHHc--cCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCC-EEEEEECCCcc-----ccc
Confidence 78999999963211111 11112 368989999876543 45566677776544 45 56899999842 112
Q ss_pred ccCCCCchhHHHHHhhcCCcee
Q psy11347 238 EIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 238 ~i~~~~~~~~~~~~~~~g~~~l 259 (294)
++. .+..++..+..+.+++
T Consensus 167 ~v~---~~~~~~~~~~~~~~~~ 185 (535)
T 3dpu_A 167 NIE---QKKINERFPAIENRFH 185 (535)
T ss_dssp CCC---HHHHHHHCGGGTTCEE
T ss_pred ccC---HHHHHHHHHhcCCceE
Confidence 221 2345555556666554
No 241
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.49 E-value=0.047 Score=58.34 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=46.1
Q ss_pred CcChHHHHhhhc---cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 33 DPGIELVKSHLS---NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 33 ~~~~~~i~~~~~---~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
...++.+.+.+. -....+.++.|..|+||||++.++|..++ ..+.+|+++++....
T Consensus 714 ~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a--~~g~~VlyiS~Ees~ 772 (2050)
T 3cmu_A 714 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHAL 772 (2050)
T ss_dssp CCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCC
T ss_pred ecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEECCCcH
Confidence 355677777775 34667788889999999999999999999 788999999997644
No 242
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.49 E-value=0.014 Score=51.04 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=41.9
Q ss_pred cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCC------CCcEEEEecCCC
Q psy11347 34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE------SVDVGVLDLDIC 89 (294)
Q Consensus 34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~------g~~VlliD~D~~ 89 (294)
...+.|...+.. ....+..+.|..|+||||++.++|...+ .. +.+|+++|++..
T Consensus 91 TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~--~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 91 TGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQ--LPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp CSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTT--SCGGGTCCSCEEEEEESSSC
T ss_pred CCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHh--cccccCCCCCeEEEEECCCC
Confidence 455677766642 2455777779999999999999999877 55 789999999764
No 243
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.47 E-value=0.012 Score=48.79 Aligned_cols=55 Identities=20% Similarity=0.215 Sum_probs=41.6
Q ss_pred cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
..++.|.+.+.. ....+.++.|..|+|||+++.++|...+ ...+.+|+++.++..
T Consensus 14 TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~-~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 14 SGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGA-EEYGEPGVFVTLEER 70 (251)
T ss_dssp CSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHH-HHHCCCEEEEESSSC
T ss_pred CCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-HhcCCCceeecccCC
Confidence 445666666642 3566888889999999999999987644 156889999998754
No 244
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.47 E-value=0.014 Score=54.74 Aligned_cols=38 Identities=34% Similarity=0.431 Sum_probs=32.7
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.+.++.|..|+||||++..|+..|. ..|.++.++|.|.
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~--~~G~~~~~ld~D~ 410 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQ--ARGRKVTLLDGDV 410 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhh--hcCCeEEEECchH
Confidence 4555568899999999999999999 7899999999874
No 245
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.46 E-value=0.014 Score=53.43 Aligned_cols=54 Identities=19% Similarity=0.415 Sum_probs=42.3
Q ss_pred cChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHHHhhcC-CCCcEEEEecCCC
Q psy11347 34 PGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARVLAKSN-ESVDVGVLDLDIC 89 (294)
Q Consensus 34 ~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~la~~~-~g~~VlliD~D~~ 89 (294)
..++.|...+.. ....+.++.|..|+||||++.++|..++ . .|.+|+++++...
T Consensus 188 tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~--~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 188 TGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA--TKTNENVAIFSLEMS 243 (454)
T ss_dssp CSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH--HHSSCCEEEEESSSC
T ss_pred CCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--HhCCCcEEEEECCCC
Confidence 445566655543 3456788889999999999999999998 4 5889999998764
No 246
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.46 E-value=0.015 Score=51.14 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=28.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
|+.+.++.|..|+||||++..||..+. +.+|++|-.
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l~-------~~iis~Ds~ 41 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKFN-------GEIISGDSM 41 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT-------EEEEECCSS
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHcC-------Cceeccccc
Confidence 345677779999999999999998765 578888853
No 247
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.45 E-value=0.13 Score=40.31 Aligned_cols=65 Identities=11% Similarity=0.052 Sum_probs=41.8
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHh----cCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRK----VNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~ 228 (294)
+.+.++|+|+..... ......+ ..+|.++++.+.+. .++..+...+..+.. .+.+ +.+|.|+.|.
T Consensus 60 ~~l~i~Dt~G~~~~~-~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 129 (181)
T 1fzq_A 60 FKLNVWDIGGQRKIR-PYWRSYF--ENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDL 129 (181)
T ss_dssp EEEEEEECSSCGGGH-HHHHHHH--TTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTS
T ss_pred EEEEEEECCCCHHHH-HHHHHHh--CCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCc
Confidence 788999999643221 1122233 57999999987654 567777666665532 2344 6789999884
No 248
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.41 E-value=0.03 Score=51.29 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=42.2
Q ss_pred ccEEEEcCCCC---------CCh-HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPG---------TSD-EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~---------~~~-~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
..+.|+|+|+- ... .....+..+ ..+|.+|++++...........++..+.+.+.+ +.+|+|++|.
T Consensus 243 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~--~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl 318 (456)
T 4dcu_A 243 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAI--DRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDA 318 (456)
T ss_dssp EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHH--HHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGG
T ss_pred ceEEEEECCCCCcCcccchHHHHHHHHHHHHHH--hhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEEChhc
Confidence 57889999862 111 112222233 468988888887664445556677777776655 5688999984
No 249
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.35 E-value=0.021 Score=48.51 Aligned_cols=39 Identities=31% Similarity=0.247 Sum_probs=31.0
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCC----------CCcEEEEecCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNE----------SVDVGVLDLDI 88 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~----------g~~VlliD~D~ 88 (294)
..+..+.|.+|+||||++..++..++ .. +.+|++++...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCC
Confidence 44666679999999999999999887 42 46788887754
No 250
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.31 E-value=0.0096 Score=46.78 Aligned_cols=34 Identities=35% Similarity=0.476 Sum_probs=24.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
|+.|+ +.|..|+||||++..||..+. ..++|.|.
T Consensus 4 m~~i~-i~G~~GsGKsTla~~La~~l~-------~~~~d~d~ 37 (175)
T 1via_A 4 AKNIV-FIGFMGSGKSTLARALAKDLD-------LVFLDSDF 37 (175)
T ss_dssp -CCEE-EECCTTSCHHHHHHHHHHHHT-------CEEEEHHH
T ss_pred CCEEE-EEcCCCCCHHHHHHHHHHHcC-------CCEEcccH
Confidence 34444 458899999999999998877 24677653
No 251
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.28 E-value=0.019 Score=45.50 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=27.6
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD 85 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD 85 (294)
+.++.|..|+||||++..|+..+. ..|..|+-.|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~--~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK--QKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEe
Confidence 345568889999999999999998 6788876554
No 252
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.27 E-value=0.027 Score=46.14 Aligned_cols=38 Identities=29% Similarity=0.421 Sum_probs=31.8
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD 85 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD 85 (294)
|...+.++-|-.|+||||++..|+..|. ..|.+|....
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~v~~~~ 41 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR--ERGIEVQLTR 41 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCccccc
Confidence 4455667778999999999999999999 8999997664
No 253
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.25 E-value=0.058 Score=49.10 Aligned_cols=65 Identities=17% Similarity=0.081 Sum_probs=36.1
Q ss_pred ccEEEEcCCCCCC-------hHHH-HHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEecccc
Q psy11347 160 LEYLLIDTPPGTS-------DEHL-SLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMAT 227 (294)
Q Consensus 160 yd~IiiD~p~~~~-------~~~~-~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~ 227 (294)
..+.|+|||+-.. .... ....++ ..+|.+|+|++....--..-..+.+.+++.+.+ +.+|+|++|
T Consensus 49 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~--~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p-~ilv~NK~D 121 (439)
T 1mky_A 49 KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI--READLVLFVVDGKRGITKEDESLADFLRKSTVD-TILVANKAE 121 (439)
T ss_dssp EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH--TTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCC-EEEEEESCC
T ss_pred eEEEEEECCCccccccchHHHHHHHHHHHHH--HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEeCCC
Confidence 5678899986332 1111 122233 578988888876431111112334445555666 458889987
No 254
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.22 E-value=0.0093 Score=52.88 Aligned_cols=66 Identities=17% Similarity=0.057 Sum_probs=38.3
Q ss_pred ccEEEEcCCCCCCh-----------H-HHHHHHHhhcCCCcEEEEecCCch--hhHHHHHHHHHHHHhcCCCeeEEEecc
Q psy11347 160 LEYLLIDTPPGTSD-----------E-HLSLVQYLKGLPDIGAIVVTTPQE--VSLLDVRKEIDFCRKVNIPIIGVVENM 225 (294)
Q Consensus 160 yd~IiiD~p~~~~~-----------~-~~~~~~~l~~~~ad~vliv~~~~~--~s~~~~~~~l~~l~~~~~~~~~vvvN~ 225 (294)
+++.|+|+|+-... . ...+...+ ..+|.+|+++++.. ........+++.+...+.+ ..+|+|+
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i--~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~-~i~V~nK 212 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYI--EKPNCIILAISPANQDLATSDAIKISREVDPSGDR-TFGVLTK 212 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHH--HSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTT-EEEEEEC
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHh--hcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCC-EEEEEeC
Confidence 68999999963321 0 11122223 47887777765432 2223445555555555556 5588999
Q ss_pred ccc
Q psy11347 226 ATF 228 (294)
Q Consensus 226 ~~~ 228 (294)
+|.
T Consensus 213 ~Dl 215 (360)
T 3t34_A 213 IDL 215 (360)
T ss_dssp GGG
T ss_pred Ccc
Confidence 985
No 255
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=95.21 E-value=0.024 Score=53.03 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=39.0
Q ss_pred CceEEEEE-ecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 46 VKHKVLVL-SGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 46 ~~~~i~v~-s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
|+|.|.|. +.-+|+|||++++.|++.|. .+|++|..+-.||.-
T Consensus 11 ~~~~i~v~gg~~s~~gk~~~~~~~~~~l~--~~g~~v~~~k~~py~ 54 (550)
T 1vco_A 11 PRKYVFITGGVVSSLGKGILTSSLGALLR--ARGYRVTAIKIDPYV 54 (550)
T ss_dssp CCEEEEEEECSSSCSCHHHHHHHHHHHHH--TTTCCEEEEEEECSS
T ss_pred ceeEEEEeCCcccCcchHHHHHHHHHHHH--hCCceeeEeeccccc
Confidence 57889999 88889999999999999999 999999999998653
No 256
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.20 E-value=0.012 Score=47.28 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=26.6
Q ss_pred hccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 43 LSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 43 ~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
+..++++| ++.|-.|+||||++..|+..+. ..++|.|.
T Consensus 14 m~~~~~~I-~l~G~~GsGKSTla~~L~~~lg-------~~~i~~d~ 51 (202)
T 3t61_A 14 VRRFPGSI-VVMGVSGSGKSSVGEAIAEACG-------YPFIEGDA 51 (202)
T ss_dssp -CCCSSCE-EEECSTTSCHHHHHHHHHHHHT-------CCEEEGGG
T ss_pred cCCCCeEE-EEECCCCCCHHHHHHHHHHHhC-------CEEEeCCc
Confidence 33444444 5558899999999999998875 23666664
No 257
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.20 E-value=0.21 Score=40.51 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=40.3
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc----CCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV----NIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~ 228 (294)
+.++++|+++.... . ..+.......+|.+|+|.+.+ ..++..+..+...+.+. +.+ +.+|.|+.|.
T Consensus 87 ~~l~~~Dt~g~~~~-~-~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL 157 (211)
T 2g3y_A 87 ATIILLDMWENKGE-N-EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDL 157 (211)
T ss_dssp EEEEEECCTTTTHH-H-HHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC-EEEEEECTTC
T ss_pred eEEEEeecCCCcch-h-hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEChHH
Confidence 67788999853321 1 122222224578777776654 46777777777666542 344 6688999984
No 258
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.19 E-value=0.056 Score=43.86 Aligned_cols=65 Identities=20% Similarity=0.155 Sum_probs=41.4
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc--CCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV--NIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~--~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+.-.... .....+ ..+|.++++.+.+. .++..+..++..+... +.+ +.+|.|++|.
T Consensus 64 ~~~~i~Dt~G~~~~~~-~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 131 (221)
T 3gj0_A 64 IKFNVWDTAGQEKFGG-LRDGYY--IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDI 131 (221)
T ss_dssp EEEEEEEECSGGGTSC-CCHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEEECTTS
T ss_pred EEEEEEeCCChHHHhH-HHHHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCcc
Confidence 7889999995321100 011122 57899998887655 5666677777777553 444 5688999985
No 259
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.17 E-value=0.021 Score=45.40 Aligned_cols=35 Identities=31% Similarity=0.363 Sum_probs=28.1
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
+.++.|..|+||||++..|+..|. ..|.+|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~--~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE--KRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH--HCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEeeC
Confidence 345568889999999999999998 78998876654
No 260
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.15 E-value=0.022 Score=46.98 Aligned_cols=55 Identities=15% Similarity=0.082 Sum_probs=39.0
Q ss_pred cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcC----CCCcEEEEecCC
Q psy11347 34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSN----ESVDVGVLDLDI 88 (294)
Q Consensus 34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~----~g~~VlliD~D~ 88 (294)
..++.|...+.. ....+..+.|.+|+||||++..++....... .+.+|++++...
T Consensus 8 tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 8 TGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp CSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 445666666643 2345666668999999999999999754001 367899999875
No 261
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.11 E-value=0.016 Score=45.84 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=24.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
++.|+ +.|-.|+||||++..||..+. . .++|.|.
T Consensus 5 ~~~i~-l~G~~GsGKst~a~~La~~l~--~-----~~i~~d~ 38 (185)
T 3trf_A 5 LTNIY-LIGLMGAGKTSVGSQLAKLTK--R-----ILYDSDK 38 (185)
T ss_dssp CCEEE-EECSTTSSHHHHHHHHHHHHC--C-----CEEEHHH
T ss_pred CCEEE-EECCCCCCHHHHHHHHHHHhC--C-----CEEEChH
Confidence 45555 457799999999999998876 2 3566653
No 262
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.11 E-value=0.023 Score=54.06 Aligned_cols=53 Identities=21% Similarity=0.209 Sum_probs=40.2
Q ss_pred cChHHHHhhhcc----CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 34 PGIELVKSHLSN----VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 34 ~~~~~i~~~~~~----~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.+.+.-|..+.. +...+.++.|-.|+||||++..|+..|. ..|..+..+|.|.
T Consensus 34 ~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~--~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 34 HVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLV--CHGIPCYTLDGDN 90 (630)
T ss_dssp CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEESHHH
T ss_pred CCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEechHH
Confidence 444555555433 2555667778899999999999999998 7899999888764
No 263
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=95.09 E-value=0.03 Score=51.77 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=42.2
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc---CCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV---NIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~---~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+......+ ....+ ..+|.+|+|.+.+. .++......+..+... ....+.+|.||.|.
T Consensus 366 ~~~~l~Dt~G~~~~~~~-~~~~~--~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 435 (497)
T 3lvq_E 366 VKFNVWDVGGQDKIRPL-WRHYY--TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 435 (497)
T ss_dssp CEEEEEEECCCGGGSGG-GGGGG--TTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSS
T ss_pred EEEEEEECCCcHHHHHH-HHHHh--ccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCC
Confidence 78999999964321111 11223 57999999998654 5677777666666432 12246788999983
No 264
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.09 E-value=0.01 Score=50.43 Aligned_cols=37 Identities=30% Similarity=0.284 Sum_probs=26.3
Q ss_pred EEEEEecCCCchHHHHHHHHHHHH--hhcCCCCcEEEEecC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVL--AKSNESVDVGVLDLD 87 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~l--a~~~~g~~VlliD~D 87 (294)
.+..+-|.+|+||||+...|+..+ . ....+|.+-+.|
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~ 85 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGREDYE--VTGGTVEFKGKD 85 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC--CCCeEEEECCEE
Confidence 345555899999999999999974 3 334567664444
No 265
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.08 E-value=0.0091 Score=54.44 Aligned_cols=66 Identities=12% Similarity=-0.026 Sum_probs=35.2
Q ss_pred ccEEEEcCCCCCC------hHHHH-HHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTS------DEHLS-LVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~------~~~~~-~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
.++.|+|+|+-.. ..... ...++ ..+|.+|++++.....-..-..+.+.+++.+.+ +.+|+|++|.
T Consensus 51 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~--~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~p-vilv~NK~D~ 123 (436)
T 2hjg_A 51 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM--DEADVIIFMVNGREGVTAADEEVAKILYRTKKP-VVLAVNKLDN 123 (436)
T ss_dssp SCCEEEC---------CHHHHHHHHHHHHH--HHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSC-EEEEEECCCC
T ss_pred ceEEEEECCCCCCcchhHHHHHHHHHHHHH--HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccC
Confidence 6789999996431 11111 12223 468989988876542111223455556666665 5689999984
No 266
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.06 E-value=0.044 Score=43.75 Aligned_cols=65 Identities=14% Similarity=0.031 Sum_probs=39.7
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc-------CCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV-------NIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~-------~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+...... .....+ ..+|.+|++.+.+. .++..+..++..+... +.+ +.+|.|+.|.
T Consensus 57 ~~~~l~Dt~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 129 (207)
T 1vg8_A 57 VTMQIWDTAGQERFQS-LGVAFY--RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-FVVLGNKIDL 129 (207)
T ss_dssp EEEEEEEECSSGGGSC-SCCGGG--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTTS
T ss_pred EEEEEEeCCCcHHHHH-hHHHHH--hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc-EEEEEECCCC
Confidence 7899999996321100 011112 57899999987644 5666666666655432 333 6789999984
No 267
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.04 E-value=0.018 Score=54.40 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=37.7
Q ss_pred ChHHHHhhh--ccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCC-CcEEEEecCC
Q psy11347 35 GIELVKSHL--SNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNES-VDVGVLDLDI 88 (294)
Q Consensus 35 ~~~~i~~~~--~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g-~~VlliD~D~ 88 (294)
+.+.+|+.+ ......+.++.|-.|+||||++..|+..|. ..| .++.++|.|.
T Consensus 381 Vsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~--~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 381 VVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLN--QQGGRSVSLLLGDT 435 (573)
T ss_dssp HHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHH--HHCSSCEEEEEHHH
T ss_pred ccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhc--ccCCceEEEECcHH
Confidence 334445444 222335566668899999999999999999 667 8899998764
No 268
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.00 E-value=0.018 Score=49.40 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=29.9
Q ss_pred cCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.+...+.+++|..|+||||++..|+..+. . ....|+.|.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~--~---~~~~Is~D~ 68 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ--G---NVIVIDNDT 68 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT--T---CCEEECTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC--C---CeEEEechH
Confidence 34567888999999999999999987664 2 356677753
No 269
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=94.98 E-value=0.042 Score=54.32 Aligned_cols=66 Identities=21% Similarity=0.088 Sum_probs=44.6
Q ss_pred CccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 159 GLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 159 ~yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
++.+.|+|+|+..... ......+ ..+|.+|+|++............+..+...+++. .+++|++|.
T Consensus 97 ~~~i~liDTPG~~df~-~~~~~~l--~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-ilviNK~D~ 162 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFS-SEVTAAL--RVTDGALVVVDTIEGVCVQTETVLRQALGERIKP-VVVINKVDR 162 (842)
T ss_dssp EEEEEEECCCCCCSSC-HHHHHHH--HTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEE-EEEEECHHH
T ss_pred CceEEEEECcCchhhH-HHHHHHH--HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCe-EEEEECCCc
Confidence 3889999999754321 2233334 5799999999887654444455566666667764 589999984
No 270
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.97 E-value=0.015 Score=47.11 Aligned_cols=34 Identities=35% Similarity=0.431 Sum_probs=24.5
Q ss_pred HhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 40 KSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 40 ~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
++.+..+...+.+++|..|+||||+...|+..+.
T Consensus 11 ~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 11 RENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -----CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4456666667778889999999999999987654
No 271
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.95 E-value=0.07 Score=42.59 Aligned_cols=65 Identities=18% Similarity=0.254 Sum_probs=40.0
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc----CCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV----NIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~ 228 (294)
+++.++|+|+......+ ....+ ..+|.++++.+.+. .++..+...+..+.+. +.+ +.+|.|+.|.
T Consensus 69 ~~l~i~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 138 (198)
T 1f6b_A 69 MTFTTFDLGGHIQARRV-WKNYL--PAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP-ILILGNKIDR 138 (198)
T ss_dssp EEEEEEEECC----CCG-GGGGG--GGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTS
T ss_pred EEEEEEECCCcHhhHHH-HHHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEEECCCc
Confidence 67889999863211100 11112 46899999988654 5677777777666432 344 6789999883
No 272
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=94.94 E-value=0.036 Score=48.80 Aligned_cols=64 Identities=11% Similarity=-0.025 Sum_probs=42.4
Q ss_pred ccEEEEcCCCC---------CChHHHHHHHHhhcCCCcEEEEecCCc----hhhHHHHHHHHHHHHhcC----CCeeEEE
Q psy11347 160 LEYLLIDTPPG---------TSDEHLSLVQYLKGLPDIGAIVVTTPQ----EVSLLDVRKEIDFCRKVN----IPIIGVV 222 (294)
Q Consensus 160 yd~IiiD~p~~---------~~~~~~~~~~~l~~~~ad~vliv~~~~----~~s~~~~~~~l~~l~~~~----~~~~~vv 222 (294)
+.++|+|+|+- +...+ +..+ ..+|.+|+|++.+ ..++.....++..+.... -....+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~f---l~~i--~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV 280 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQF---LRHI--ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIV 280 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHH---HHHH--HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBE
T ss_pred ceEEEecCCCCcccccccchhHHHH---HHHH--HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEE
Confidence 57899999851 22222 2222 3589899998876 367777777888887642 2236789
Q ss_pred eccccc
Q psy11347 223 ENMATF 228 (294)
Q Consensus 223 vN~~~~ 228 (294)
+|++|.
T Consensus 281 ~NK~Dl 286 (342)
T 1lnz_A 281 ANKMDM 286 (342)
T ss_dssp EECTTS
T ss_pred EECccC
Confidence 999883
No 273
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.91 E-value=0.02 Score=45.40 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+..+.++.|..|+||||++..|+..+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445666778999999999999998776
No 274
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=94.89 E-value=0.033 Score=51.94 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=37.6
Q ss_pred ceEEEEE-ecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVL-SGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~-s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
+|.|.|. +.-+|+|||++++.|++.|+ .+|++|..+..||.
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~--~~g~~v~~~k~~py 44 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILE--ARGLNVTIMKLDPY 44 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHH--TTTCCEEEEEEECC
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHH--hCCceeeeeecccc
Confidence 5788888 88889999999999999999 99999999999864
No 275
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.88 E-value=0.034 Score=48.16 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=31.0
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
.+..+.|..|+||||++..|+..+.....+.+|.++++|..
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 44555588999999999999998761124668999988854
No 276
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.84 E-value=0.029 Score=45.22 Aligned_cols=35 Identities=40% Similarity=0.503 Sum_probs=28.3
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD 85 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD 85 (294)
.+.++.|-.|+||||++..|+..+. ..+.++.++.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~--~~~~~~~~~~ 45 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLK--NNNVEVKHLY 45 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEe
Confidence 4556668889999999999999998 7788885544
No 277
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.83 E-value=0.021 Score=47.87 Aligned_cols=38 Identities=21% Similarity=0.442 Sum_probs=29.6
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
....+.++.|..|+||||++..|+..+. . .+.++|.|.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~--~---~~~~~~~D~ 67 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ--G---NIVIIDGDS 67 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT--T---CCEEECGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC--C---CcEEEecHH
Confidence 3456777789999999999999998765 2 456778875
No 278
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.82 E-value=0.047 Score=44.46 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=37.8
Q ss_pred cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcC------CCCcEEEEecCC
Q psy11347 34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSN------ESVDVGVLDLDI 88 (294)
Q Consensus 34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~------~g~~VlliD~D~ 88 (294)
..++.|...+.. ....+..+.|.+|+||||++..|+..+. . .+.++++++...
T Consensus 9 tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~--~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 9 TGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ--LPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp CSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT--SCGGGTCCSCEEEEEESSS
T ss_pred CCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHh--cccccCCCCCEEEEEECCC
Confidence 345566655532 2445666679999999999999999776 4 366788888754
No 279
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=94.81 E-value=0.048 Score=49.57 Aligned_cols=66 Identities=15% Similarity=0.083 Sum_probs=47.8
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+... ....+...+ ..+|.+|+|++.+......+...+..+...+.+.+.+++|++|.
T Consensus 104 ~~~~iiDtpGh~~-f~~~~~~~~--~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl 169 (434)
T 1zun_B 104 RKFIIADTPGHEQ-YTRNMATGA--STCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDL 169 (434)
T ss_dssp EEEEEEECCCSGG-GHHHHHHHH--TTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTT
T ss_pred ceEEEEECCChHH-HHHHHHHHH--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcC
Confidence 7899999996433 222333344 68999999998876555566666777777787767789999984
No 280
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.81 E-value=0.022 Score=53.12 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=34.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
++.+.++.|-.|+||||++..||..|. ..+.++.+++.|.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~--~~~~d~~v~s~D~ 73 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN--WIGVPTKVFNVGE 73 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCCeEEecccH
Confidence 556677779999999999999999998 7888998888874
No 281
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.80 E-value=0.16 Score=40.59 Aligned_cols=65 Identities=20% Similarity=0.161 Sum_probs=41.2
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHH-HHHHHHHHhc--CCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDV-RKEIDFCRKV--NIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~-~~~l~~l~~~--~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+....... ....+ ..+|.+|++.+.+. .++..+ ..++..+... +.+ +.+|.|+.|.
T Consensus 73 ~~~~i~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 141 (207)
T 2fv8_A 73 VELALWDTAGQEDYDRL-RPLSY--PDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVP-IILVANKKDL 141 (207)
T ss_dssp EEEEEEECTTCTTCTTT-GGGGC--TTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGG
T ss_pred EEEEEEECCCcHHHHHH-HHhhc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhh
Confidence 68899999964321111 11112 57899998887654 566666 4566666554 445 5689999984
No 282
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.78 E-value=0.015 Score=45.33 Aligned_cols=31 Identities=39% Similarity=0.437 Sum_probs=23.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
+.++.|..|+||||++..||..+. . .++|.|
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~--~-----~~id~d 36 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN--M-----EFYDSD 36 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT--C-----EEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--C-----CEEecc
Confidence 344558899999999999998877 3 466765
No 283
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.72 E-value=0.012 Score=47.74 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=29.0
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
+.++.|..|+||||++..|+..|. ..|.+|.++..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~--~~g~~v~~~~~ 36 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR--AAGRSVATLAF 36 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH--EEEEEEEEEES
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEee
Confidence 345568889999999999999999 77888887753
No 284
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.69 E-value=0.012 Score=61.02 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=35.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChh
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMP 94 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~ 94 (294)
+..++++ |+.|+||||++..|.+.+. ....+|++-+.|...-++.
T Consensus 1105 Ge~vaIV-G~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~ 1149 (1321)
T 4f4c_A 1105 GQTLALV-GPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPE 1149 (1321)
T ss_dssp TCEEEEE-CSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHH
T ss_pred CCEEEEE-CCCCChHHHHHHHHhcCcc--CCCCEEEECCEEhhhCCHH
Confidence 5667777 8899999999999999998 7788898877776544433
No 285
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.68 E-value=0.023 Score=44.44 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=24.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
+.+.++.|..|+||||++..|+.. . . ...+++.|
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~-~---~--~~~~i~~d 35 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK-N---P--GFYNINRD 35 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH-S---T--TEEEECHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh-c---C--CcEEecHH
Confidence 456677799999999999998872 1 2 35566664
No 286
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.65 E-value=0.11 Score=43.31 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=16.2
Q ss_pred eEEEEEecCCCchHHHHHHHHH
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLA 69 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA 69 (294)
..|+++ |..|+||||+...|.
T Consensus 23 ~~I~lv-G~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 23 LRIILV-GKTGTGKSAAGNSIL 43 (260)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHh
Confidence 445555 789999999987765
No 287
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.64 E-value=0.035 Score=43.38 Aligned_cols=34 Identities=38% Similarity=0.542 Sum_probs=25.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
..+.++.|..|+||||++..|+..+. ..++|.|.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g-------~~~i~~d~ 41 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH-------AAFLDGDF 41 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT-------CEEEEGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC-------cEEEeCcc
Confidence 34556668999999999999988765 34667764
No 288
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.64 E-value=0.17 Score=43.21 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=25.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCC----cEEEEe
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESV----DVGVLD 85 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~----~VlliD 85 (294)
-.++.|..|+|||+++..+|..+. ..+. .++.++
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~--~~~~~~~~~~~~~~ 106 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLH--RLGYVRKGHLVSVT 106 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH--HTTSSSSCCEEEEC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH--hcCCcCCCcEEEEc
Confidence 456668899999999999999998 4443 454444
No 289
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.62 E-value=0.044 Score=50.92 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=31.8
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcC-C-CCcEEEEecCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSN-E-SVDVGVLDLDI 88 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~-~-g~~VlliD~D~ 88 (294)
.+.++.|-.|+||||++..||..|. . . +..+-++|.|.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~--~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFL--QFGGGRYYKIFEHNN 435 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHT--TSCSCCCEEECCCTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHH--HhhcCcceEEecCCC
Confidence 4556678889999999999999999 5 5 47778999886
No 290
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.58 E-value=0.045 Score=51.96 Aligned_cols=40 Identities=30% Similarity=0.356 Sum_probs=30.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
+..++++ |.+|+||||+...|+..+. ....+|.+-+.|..
T Consensus 370 G~~~~iv-G~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 370 GSVTALV-GPSGSGKSTVLSLLLRLYD--PASGTISLDGHDIR 409 (595)
T ss_dssp TCEEEEE-CCTTSSSTHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhcCcC--CCCcEEEECCEEhh
Confidence 4445554 8899999999999999988 77778877555553
No 291
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.53 E-value=0.039 Score=51.80 Aligned_cols=39 Identities=36% Similarity=0.401 Sum_probs=31.0
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCC-CcEEEEecCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNES-VDVGVLDLDI 88 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g-~~VlliD~D~ 88 (294)
..+.++.|..|+||||++..||..+. ..+ .++.++|.|.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~--~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM--EMGGRCVTLLDGDI 408 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH--TTCSSCEEEESSHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc--ccCCceEEEECCcH
Confidence 34555568899999999999999998 555 4788888764
No 292
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.53 E-value=0.013 Score=46.25 Aligned_cols=31 Identities=48% Similarity=0.659 Sum_probs=24.1
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.++.|..|+||||++..||..|. . .++|.|.
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg--~-----~~id~D~ 35 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKALG--V-----GLLDTDV 35 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT--C-----CEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--C-----CEEeCch
Confidence 44558899999999999999877 2 2677763
No 293
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.48 E-value=0.029 Score=48.25 Aligned_cols=40 Identities=20% Similarity=0.110 Sum_probs=30.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCC--CcEEEE-ecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNES--VDVGVL-DLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g--~~Vlli-D~D~ 88 (294)
...+..+.|..|+||||++..|+..+. ..| .++..+ ..|.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~--~~g~~~~~~~iv~~D~ 72 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM--EKYGGEKSIGYASIDD 72 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH--HHHGGGSCEEEEEGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh--hcCCCCceEEEecccc
Confidence 455666669999999999999999998 443 344444 7775
No 294
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.46 E-value=0.026 Score=45.41 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=25.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
..+.++.|..|+||||++..|+..+. ..++|.|.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g-------~~~i~~d~ 62 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETG-------LEFAEADA 62 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHC-------CEEEEGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC-------CeEEcccc
Confidence 34556669999999999999998774 24566654
No 295
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.45 E-value=0.046 Score=51.18 Aligned_cols=32 Identities=25% Similarity=0.509 Sum_probs=25.6
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEE
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV 83 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vll 83 (294)
+..+-|.+|+||||+...|+..+. ....+|.+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~ 327 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT--ADEGSVTP 327 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC--CSBCCEES
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEE
Confidence 444558899999999999999988 66666653
No 296
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.43 E-value=0.029 Score=44.50 Aligned_cols=33 Identities=21% Similarity=0.481 Sum_probs=24.5
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
.+.++.|..|+||||++..||..+- | ..++|+|
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~----g--~~~id~d 43 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELD----G--FQHLEVG 43 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST----T--EEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC----C--CEEeeHH
Confidence 3455668899999999999988732 2 5567776
No 297
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.40 E-value=0.037 Score=48.22 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=27.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
|+.+.++.|..|+||||++..||..+. ..++++|-
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~-------~~iis~Ds 38 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALP-------CELISVDS 38 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC-------EEEEEECT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC-------CcEEeccc
Confidence 334666778999999999999988665 56788874
No 298
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.40 E-value=0.031 Score=44.89 Aligned_cols=39 Identities=31% Similarity=0.400 Sum_probs=21.4
Q ss_pred CcChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 33 DPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 33 ~~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
++....+.-.+.. ++.| ++.|..|+||||++..||..+.
T Consensus 12 ~~~~~~~~~~~~~-~~~i-~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 12 DLGTENLYFQSNA-MVRI-FLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ------------C-CCEE-EEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCceeEecCC-CCEE-EEEcCCCCCHHHHHHHHHHHcC
Confidence 3444444434433 3444 4558899999999999998886
No 299
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.36 E-value=0.018 Score=52.43 Aligned_cols=43 Identities=12% Similarity=0.003 Sum_probs=27.9
Q ss_pred CCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 185 LPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 185 ~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
..+|.++++.+.+.........++..+...+.+ +.+|+|++|.
T Consensus 256 ~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~-iiiv~NK~Dl 298 (436)
T 2hjg_A 256 DRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDA 298 (436)
T ss_dssp HHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGG
T ss_pred HhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCc-EEEEEECccC
Confidence 468888888877653222223566666666655 5688999984
No 300
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.36 E-value=0.1 Score=45.57 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=19.9
Q ss_pred EEEecCCCchHHHHHHHHHHHHh
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la 73 (294)
.++.|..|+||||++..+|..+-
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 56678999999999999999654
No 301
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.36 E-value=0.025 Score=46.61 Aligned_cols=44 Identities=30% Similarity=0.369 Sum_probs=34.2
Q ss_pred cCceEEEEEecCCCchHHHHHHHHHHHHhhcC-CCCcEEEEecCCCC
Q psy11347 45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSN-ESVDVGVLDLDICG 90 (294)
Q Consensus 45 ~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~-~g~~VlliD~D~~~ 90 (294)
.+...+.++.|-.|+||||++..|+..|. . .|.+|.++--.|.+
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~--~~~g~~v~~~treP~~ 62 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLS--EIYGVNNVVLTREPGG 62 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCGGGEEEEESSCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh--hccCceeeEeeeCCCC
Confidence 33455666678899999999999999999 7 89999884455543
No 302
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.35 E-value=0.035 Score=43.94 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.0
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+.+.++.|-.|+||||++..|+..+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45667778899999999999998776
No 303
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.32 E-value=0.038 Score=47.94 Aligned_cols=36 Identities=31% Similarity=0.426 Sum_probs=27.4
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
|++.+.+++|..|+||||++..||..+. .-+|.+|-
T Consensus 1 m~~~~i~i~GptgsGKt~la~~La~~~~-------~~iis~Ds 36 (322)
T 3exa_A 1 MKEKLVAIVGPTAVGKTKTSVMLAKRLN-------GEVISGDS 36 (322)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHTTT-------EEEEECCG
T ss_pred CCCcEEEEECCCcCCHHHHHHHHHHhCc-------cceeecCc
Confidence 3455778889999999999999987655 35677763
No 304
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.32 E-value=0.046 Score=45.50 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=29.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCC-----CCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-----SVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-----g~~VlliD~D~ 88 (294)
...+..+.|..|+||||++..|+..+. .. ..++.+++.|.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG--~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG--QNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT--GGGSCGGGCSEEEEEGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc--hhcccccCCceEEEeCCc
Confidence 334455558999999999999999876 32 45677887763
No 305
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.29 E-value=0.043 Score=45.66 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=29.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCc-EEEE
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVD-VGVL 84 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~-Vlli 84 (294)
...+.++.|-.|+||||++..|+..|. ..|.+ |.+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~--~~~~~~~~~~ 62 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ--QNGIDHITRT 62 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH--HTTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCeeeee
Confidence 345666678889999999999999999 88998 5554
No 306
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.25 E-value=0.029 Score=46.45 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=27.7
Q ss_pred hHHHHhhhccC-ceEEEEEecCCCchHHHHHHHHHHHHhhcCC----CCcEEEEe
Q psy11347 36 IELVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE----SVDVGVLD 85 (294)
Q Consensus 36 ~~~i~~~~~~~-~~~i~v~s~kGGvGKTTia~~LA~~la~~~~----g~~VlliD 85 (294)
.+.+..+...| ...+.++.|-.|+||||++..|+..|. .. |.+|.+.-
T Consensus 12 ~~~~~~~~~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~--~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 12 LEAQTQGPGSMARGKFITFEGIDGAGKTTHLQWFCDRLQ--ERLGPAGRHVVVTR 64 (227)
T ss_dssp -----------CCCCEEEEECCC---CHHHHHHHHHHHH--HHHGGGTCCEEEEE
T ss_pred HHHHHhcCccccCCeEEEEECCCCCCHHHHHHHHHHHHH--hhccccceeeeeec
Confidence 34444444554 345667779999999999999999998 67 89987654
No 307
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.13 E-value=0.049 Score=44.52 Aligned_cols=35 Identities=29% Similarity=0.457 Sum_probs=28.3
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCC-cEEEE
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESV-DVGVL 84 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~-~Vlli 84 (294)
..+.++-|-.|+||||.+..|+..|. ..|. .|.+.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~~v~~~ 38 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLE--QLGIRDMVFT 38 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH--HTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HcCCCcceee
Confidence 34556668889999999999999999 7887 66544
No 308
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.10 E-value=0.038 Score=52.51 Aligned_cols=30 Identities=37% Similarity=0.567 Sum_probs=23.5
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcE
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDV 81 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~V 81 (294)
+..+-|.+|+||||+...|+..+. ....+|
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I 413 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE--PTEGKV 413 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC--CSBSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CCceEE
Confidence 445558999999999999999887 544444
No 309
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.10 E-value=0.049 Score=48.74 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=32.4
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
-.++.|..|+||||++..++..+. ..|.+|+++|.+..
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~--~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREY--MQGSRVIIIDPERE 74 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEESSCC
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHH--HCCCEEEEEeCCcC
Confidence 345668999999999999999998 88999999987643
No 310
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.09 E-value=0.039 Score=46.31 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=25.0
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
+.++.|..|+||||++..||..+. ..+++.|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~-------~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG-------WPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC-------CCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC-------CeEEeccH
Confidence 556678999999999999998776 23567764
No 311
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.06 E-value=0.038 Score=42.81 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=24.8
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
+.++.|-.|+||||++..|+..+. . .++|.|.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~--~-----~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK--Y-----PIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC--C-----CEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--C-----eeecCcc
Confidence 456668899999999999998876 2 3577764
No 312
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.02 E-value=0.052 Score=47.15 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=41.2
Q ss_pred cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhh-c---------CCC----CcEEEEecCCC
Q psy11347 34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAK-S---------NES----VDVGVLDLDIC 89 (294)
Q Consensus 34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~-~---------~~g----~~VlliD~D~~ 89 (294)
..++.|...+.. ....+..+.|..|+||||++.++|...+. . ..| .+|+++|++..
T Consensus 82 TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 82 TSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp CSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred CCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 456777777742 35667888899999999999999987430 0 134 79999999764
No 313
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.02 E-value=0.037 Score=44.61 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=25.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.+..+.|..|+||||++..|+..+. .+.+++.|.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~------~~~~i~~D~ 55 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLP------NCSVISQDD 55 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTST------TEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC------CcEEEeCCc
Confidence 3444557889999999888776553 478888875
No 314
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.98 E-value=0.24 Score=38.91 Aligned_cols=65 Identities=12% Similarity=0.057 Sum_probs=41.6
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHH-HHHHHHHhc--CCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVR-KEIDFCRKV--NIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~-~~l~~l~~~--~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+......+ ....+ ..+|.+|+|.+.+. .++..+. .++..+... +.+ +.+|.|+.|.
T Consensus 66 ~~~~i~D~~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 134 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDRL-RPLSY--PMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDL 134 (194)
T ss_dssp EEEEEECCCCSSSSTTT-GGGGC--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTS
T ss_pred EEEEEEECCCCcchhHH-HHHhc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhh
Confidence 67899999964321111 11112 57899999887654 5566665 566777654 444 5699999884
No 315
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=93.98 E-value=0.16 Score=46.51 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=47.2
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHH-------HHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLL-------DVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~-------~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.++|+|+|+... ..-.+...+ ..+|.+|++++.+..... .+...+..+...+++.+.+++|++|.
T Consensus 85 ~~~~iiDtPGh~~-f~~~~~~~~--~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl 157 (458)
T 1f60_A 85 YQVTVIDAPGHRD-FIKNMITGT--SQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDS 157 (458)
T ss_dssp EEEEEEECCCCTT-HHHHHHHSS--SCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGG
T ss_pred ceEEEEECCCcHH-HHHHHHhhh--hhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcccc
Confidence 7899999996443 222333333 689999999998865443 55566666677788767789999984
No 316
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.97 E-value=0.061 Score=47.47 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=38.7
Q ss_pred cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcCC------CCcEEEEecCC
Q psy11347 34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE------SVDVGVLDLDI 88 (294)
Q Consensus 34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~------g~~VlliD~D~ 88 (294)
...+.|...+.. ....+..+.|..|+||||++..++..+. .. +.+|+++|...
T Consensus 115 TG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~--~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 115 TGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ--LPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp CSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT--SCGGGTSCSCEEEEEESSS
T ss_pred CCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc--cchhcCCCCCeEEEEeCCC
Confidence 345666665542 3455666678999999999999999885 32 46889999854
No 317
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.91 E-value=0.56 Score=37.42 Aligned_cols=66 Identities=18% Similarity=0.154 Sum_probs=36.9
Q ss_pred ccEEEEcCCCCCChHHHH-HHHHhhcCCCcEEEEecCCchh--hHHHHHHHHH-HHHh---cC-CCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLS-LVQYLKGLPDIGAIVVTTPQEV--SLLDVRKEID-FCRK---VN-IPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~-~~~~l~~~~ad~vliv~~~~~~--s~~~~~~~l~-~l~~---~~-~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+... ... ...... ..+|.+|++.+.+.. +.......+. .+.. .. ...+.+|.|+.|.
T Consensus 54 ~~~~i~Dt~G~~~--~~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 127 (214)
T 2fh5_B 54 NSLTLIDLPGHES--LRFQLLDRFK-SSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 127 (214)
T ss_dssp CEEEEEECCCCHH--HHHHHHHHHG-GGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTS
T ss_pred cEEEEEECCCChh--HHHHHHHHHH-hhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCC
Confidence 7899999996432 111 222211 478989999887652 2333333222 2222 12 2346789999984
No 318
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.89 E-value=0.046 Score=44.60 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=20.0
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
.+|+ +.|..|+||||++..|+..+.
T Consensus 6 ~~i~-i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVIT-IDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEE-EECCTTSSHHHHHHHHHHHHT
T ss_pred eEEE-EECCCCCCHHHHHHHHHHHhC
Confidence 3444 458899999999999998775
No 319
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.86 E-value=0.039 Score=46.21 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+.+|+++ |..|+||||++..||..|.
T Consensus 27 g~~I~I~-G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVD-GPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEE-CCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHhcC
Confidence 4555555 8899999999999997776
No 320
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.85 E-value=0.051 Score=47.12 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=30.3
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
..++.|..|+||||++..++..+. ..+.+++.+++.
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~--~~~~~~~~i~~~ 74 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAK--KRGYRVIYSSAD 74 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHH--HTTCCEEEEEHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEHH
Confidence 345568889999999999999998 668899998764
No 321
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.84 E-value=0.086 Score=43.48 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=28.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD 85 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD 85 (294)
..+.++-|-.|+||||++..|+..|. . |.+|+...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~--~-~~~~~~~~ 60 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLV--K-DYDVIMTR 60 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT--T-TSCEEEEC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh--c-CCCceeec
Confidence 34556668889999999999999999 7 88886553
No 322
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.82 E-value=0.036 Score=43.75 Aligned_cols=26 Identities=38% Similarity=0.514 Sum_probs=21.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
..+.++.|.+|+||||++..|+..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34666669999999999999998765
No 323
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.81 E-value=0.033 Score=44.70 Aligned_cols=48 Identities=27% Similarity=0.277 Sum_probs=31.8
Q ss_pred ChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Q psy11347 35 GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVL 84 (294)
Q Consensus 35 ~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vlli 84 (294)
....|+..+........++.|..|+|||+++..++..+. ..+.++.++
T Consensus 25 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~--~~~~~~~~~ 72 (226)
T 2chg_A 25 VIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFI 72 (226)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGGGGGEE
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh--ccccccceE
Confidence 344555555443322367779999999999999999987 444443333
No 324
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=93.81 E-value=0.026 Score=52.36 Aligned_cols=65 Identities=12% Similarity=0.084 Sum_probs=42.7
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+...... .....+ ..+|.++++++.+......+...+..+...+.+ +-+++|++|.
T Consensus 51 ~~i~~iDTPGhe~f~~-~~~~~~--~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl 115 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTS-MRARGA--QATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDK 115 (501)
T ss_dssp SCCCEECCCTTTCCTT-SBCSSS--BSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSS
T ss_pred EEEEEEECCCcHHHHH-HHHHHH--hhCCEEEEEeecccCccHHHHHHHHHHHhcCce-EEEEEEeccc
Confidence 5788999996432110 011111 478989999877664444555666677777888 6789999985
No 325
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.81 E-value=0.064 Score=46.44 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=27.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
++.+.+++|..|+||||++..||..+. .-+|.+|-
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~-------~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP-------VELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC-------EEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC-------CcEEeccc
Confidence 445677889999999999999988765 34677764
No 326
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.79 E-value=0.037 Score=43.49 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=20.7
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
.+.++.|-.|+||||++..||..+.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3455678999999999999998776
No 327
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.76 E-value=0.18 Score=44.63 Aligned_cols=66 Identities=17% Similarity=0.122 Sum_probs=36.3
Q ss_pred ccEEEEcCCCCCC-------hHHHHHHHHhhcCCCcEEEEecCCchhh---HHHHHHHHHHHHhc---CCCeeEEEeccc
Q psy11347 160 LEYLLIDTPPGTS-------DEHLSLVQYLKGLPDIGAIVVTTPQEVS---LLDVRKEIDFCRKV---NIPIIGVVENMA 226 (294)
Q Consensus 160 yd~IiiD~p~~~~-------~~~~~~~~~l~~~~ad~vliv~~~~~~s---~~~~~~~l~~l~~~---~~~~~~vvvN~~ 226 (294)
.++.++|+++... ..+..++..+ ..+|.+++|++.+... ......+.+.+... +.+ +.+|.|++
T Consensus 226 ~~v~l~DT~G~i~~lp~~lve~f~~tl~~~--~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p-~ilV~NK~ 302 (364)
T 2qtf_A 226 RKIMLVDTVGFIRGIPPQIVDAFFVTLSEA--KYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKP-ILVTLNKI 302 (364)
T ss_dssp EEEEEEECCCBCSSCCGGGHHHHHHHHHGG--GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCC-EEEEEECG
T ss_pred EEEEEEeCCCchhcCCHHHHHHHHHHHHHH--HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCC-EEEEEECC
Confidence 4567788875422 1122333434 5689888888754322 23333334444443 334 56889998
Q ss_pred cc
Q psy11347 227 TF 228 (294)
Q Consensus 227 ~~ 228 (294)
+.
T Consensus 303 Dl 304 (364)
T 2qtf_A 303 DK 304 (364)
T ss_dssp GG
T ss_pred CC
Confidence 83
No 328
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.76 E-value=0.26 Score=39.63 Aligned_cols=65 Identities=12% Similarity=0.063 Sum_probs=36.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHH-HHHHHHHhc--CCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVR-KEIDFCRKV--NIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~-~~l~~l~~~--~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+......+ ....+ ..+|.+|++.+.+ ..++..+. .++..+... +.+ +.+|.|+.|.
T Consensus 82 ~~l~l~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 150 (214)
T 2j1l_A 82 VHLHIWDTAGQDDYDRL-RPLFY--PDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVP-IIVVGCKTDL 150 (214)
T ss_dssp EEEEEEEC------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECGGG
T ss_pred EEEEEEECCCchhhhHH-HHHHh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhh
Confidence 67899999964321111 11112 4789899888764 35666664 566666543 344 5688999984
No 329
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.75 E-value=0.14 Score=44.13 Aligned_cols=66 Identities=14% Similarity=-0.082 Sum_probs=39.6
Q ss_pred ccEEEEcCCCCCChH----HHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHH---hc--CCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDE----HLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCR---KV--NIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~----~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~---~~--~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+..... .......+ ..+|.+|+|.+.+. .+...+..+.+.+. .. +. .+.+|.|++|.
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~--~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~-piilv~NK~Dl 127 (307)
T 3r7w_A 52 MTLNLWDCGGQDVFMENYFTKQKDHIF--QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDA-KIFVLLHKMDL 127 (307)
T ss_dssp EEEEEEEECCSHHHHHHHHTTTHHHHH--TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTC-EEEEEEECGGG
T ss_pred eEEEEEECCCcHHHhhhhhhhHHHHHh--ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCC-eEEEEEecccc
Confidence 789999999642110 00111122 57999999998765 56666655444443 22 33 46688999984
No 330
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.74 E-value=0.092 Score=45.55 Aligned_cols=40 Identities=28% Similarity=0.275 Sum_probs=31.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCC-C-CcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE-S-VDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~-g-~~VlliD~D~ 88 (294)
...+..+.|.+|+||||++..|+..+. .. | .+|.++-.|.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~--~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA--RWDHHPRVDLVTTDG 130 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH--TSTTCCCEEEEEGGG
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc--ccCCCCeEEEEecCc
Confidence 445556669999999999999999998 43 3 4688877664
No 331
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=93.70 E-value=0.13 Score=45.80 Aligned_cols=64 Identities=9% Similarity=-0.095 Sum_probs=48.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEec-ccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVEN-MAT 227 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN-~~~ 227 (294)
+.+.|+|+|+... ....+...+ ..+|.+|+|++ +......+...+..+...+++..-+++| ++|
T Consensus 60 ~~i~iiDtPGh~~-f~~~~~~~~--~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~D 124 (370)
T 2elf_A 60 RNMVFVDAHSYPK-TLKSLITAL--NISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDS 124 (370)
T ss_dssp SEEEEEECTTTTT-CHHHHHHHH--HTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGG
T ss_pred eEEEEEECCChHH-HHHHHHHHH--HHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 7899999996543 222333334 57999999999 7666677788888888888887678888 987
No 332
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.67 E-value=0.066 Score=48.18 Aligned_cols=55 Identities=18% Similarity=0.109 Sum_probs=40.0
Q ss_pred CcChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHHhhcC------CCCcEEEEecCCC
Q psy11347 33 DPGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVLAKSN------ESVDVGVLDLDIC 89 (294)
Q Consensus 33 ~~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~la~~~------~g~~VlliD~D~~ 89 (294)
...++.|...+.. ....+..+.|..|+||||++..|+.... . .+.+|+++|....
T Consensus 161 ~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~--~p~~~Gg~~~~viyid~E~~ 223 (400)
T 3lda_A 161 TTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQ--IPLDIGGGEGKCLYIDTEGT 223 (400)
T ss_dssp CCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTT--SCGGGTCCSSEEEEEESSSC
T ss_pred ccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhc--cCcccCCCCCcEEEEeCCCc
Confidence 3456666666632 2455677779999999999999887665 3 4678999998753
No 333
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.67 E-value=0.057 Score=42.51 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=20.7
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
.+.++.|..|+||||++..||..+.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3556668899999999999998775
No 334
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.66 E-value=0.03 Score=43.30 Aligned_cols=19 Identities=47% Similarity=0.873 Sum_probs=16.7
Q ss_pred EEEEecCCCchHHHHHHHH
Q psy11347 50 VLVLSGKGGVGKSTFTNLL 68 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~L 68 (294)
+.++.|..|+||||++..|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5667799999999999988
No 335
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.65 E-value=0.045 Score=44.01 Aligned_cols=33 Identities=39% Similarity=0.541 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
|.+|+ +.|..|+||||++..||. + |. .++|.|.
T Consensus 2 ~~~i~-l~G~~GsGKST~~~~La~-l-----g~--~~id~d~ 34 (206)
T 1jjv_A 2 TYIVG-LTGGIGSGKTTIANLFTD-L-----GV--PLVDADV 34 (206)
T ss_dssp CEEEE-EECSTTSCHHHHHHHHHT-T-----TC--CEEEHHH
T ss_pred CcEEE-EECCCCCCHHHHHHHHHH-C-----CC--cccchHH
Confidence 44444 458899999999888765 2 33 3567763
No 336
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.53 E-value=0.088 Score=45.07 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=32.9
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
...++.|..|+||||++..+|..+. ..+..+..+|+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~--~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEY 86 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH--SCGGGEEEEEGGGC
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc--CCCcceEEeecccc
Confidence 4566678899999999999999998 77888999988643
No 337
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.52 E-value=0.049 Score=43.11 Aligned_cols=35 Identities=37% Similarity=0.467 Sum_probs=24.7
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
..+.++.|.+|+||||++..|+..+. ...+.+|.|
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~-----~g~i~i~~d 43 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPG-----VPKVHFHSD 43 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSS-----SCEEEECTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccC-----CCeEEEccc
Confidence 44666679999999999999877532 234556654
No 338
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.52 E-value=0.056 Score=42.79 Aligned_cols=23 Identities=43% Similarity=0.663 Sum_probs=19.2
Q ss_pred eEEEEEecCCCchHHHHHHHHHH
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLAR 70 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~ 70 (294)
..+.++.|.+|+||||++..|+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 34566679999999999999986
No 339
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.48 E-value=0.035 Score=44.47 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=21.1
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
..+.++.|..|+||||++..|+..+.
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 34556668899999999999998874
No 340
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.48 E-value=0.082 Score=42.54 Aligned_cols=34 Identities=32% Similarity=0.373 Sum_probs=29.1
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
.++=|--|+||||.+..|+..|. ..|.+|.+..-
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~--~~g~~v~~tre 36 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLE--KRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEEC
Confidence 34557789999999999999999 89999988754
No 341
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.43 E-value=0.07 Score=47.13 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=30.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCC--------CCcEEEEecC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNE--------SVDVGVLDLD 87 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~--------g~~VlliD~D 87 (294)
....++.|..|+||||++..++..+. .. +..++.+++.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIE--EVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH--HHHHHSSSSTTCEEEEEEHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH--HHhhhhcCCCCceEEEEECc
Confidence 34667779999999999999999986 33 7778888763
No 342
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.42 E-value=0.047 Score=43.77 Aligned_cols=32 Identities=34% Similarity=0.515 Sum_probs=22.4
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
++|++ .|..|+||||++..||. +. +.++|+|.
T Consensus 2 ~~i~i-~G~~GsGKSTl~~~L~~-~g-------~~~i~~d~ 33 (204)
T 2if2_A 2 KRIGL-TGNIGCGKSTVAQMFRE-LG-------AYVLDADK 33 (204)
T ss_dssp CEEEE-EECTTSSHHHHHHHHHH-TT-------CEEEEHHH
T ss_pred eEEEE-ECCCCcCHHHHHHHHHH-CC-------CEEEEccH
Confidence 34444 57899999999988887 42 45566653
No 343
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.40 E-value=0.059 Score=44.77 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=20.2
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+.++.|..|+||||++..|+..+.
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 445558999999999999998776
No 344
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.40 E-value=0.056 Score=43.41 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=25.3
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
.+..+.|..|+||||++..|+..+. +-++|+|.-
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg-------~~vid~D~~ 46 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYG-------AHVVNVDRI 46 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC-------CEEEECcHH
Confidence 3445557789999999999987654 567888753
No 345
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=93.39 E-value=0.19 Score=47.57 Aligned_cols=65 Identities=17% Similarity=0.041 Sum_probs=43.2
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|||+...... .....+ ..+|.+|+|++.+..-...+...+..+...+++ +.+++|++|.
T Consensus 70 ~~i~liDTPGhe~F~~-~~~r~~--~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vP-iIVViNKiDl 134 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTT-LRKRGG--ALADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANKIDR 134 (594)
T ss_dssp CEEEEECCCTTSCCTT-SBCSSS--BSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCC-EEEEEECGGG
T ss_pred CCEEEEECCCcHHHHH-HHHHHH--hhCCEEEEEEECCCCccHhHHHHHHHHHHcCCe-EEEEeccccc
Confidence 4699999996533110 011111 468999999988764444555666777777887 5689999985
No 346
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.36 E-value=0.11 Score=42.19 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=26.8
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD 85 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD 85 (294)
+.++=|--|+||||.+..|+..|. . |.+|.+.-
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~--~-~~~v~~~~ 36 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV--K-DYDVIMTR 36 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT--T-TSCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH--C-CCCEEEee
Confidence 444557789999999999999998 4 88887763
No 347
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.36 E-value=0.14 Score=45.20 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=31.2
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCC-CCcEEEEecCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNE-SVDVGVLDLDI 88 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~-g~~VlliD~D~ 88 (294)
..++.|..|+||||++..++..+. .. +..++.+++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK--DKTTARFVYINGFI 83 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT--TSCCCEEEEEETTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh--hhcCeeEEEEeCcc
Confidence 566779999999999999999998 66 67888888754
No 348
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.35 E-value=0.062 Score=43.73 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+.++.|..|+||||++..||..+.
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 344557789999999999998876
No 349
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.33 E-value=0.16 Score=45.95 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=32.8
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...-+..+.|..|+||||+...|+..+. ....+|.+++-+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~I~~~ed~i 205 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVEDPI 205 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEESSC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEEecccc
Confidence 3445666779999999999999999998 6777888877443
No 350
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.33 E-value=0.27 Score=48.68 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=32.4
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
...++.|..|+|||++|..|+..+. ..+..++.+|+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~ 626 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTE 626 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechh
Confidence 3566779999999999999999998 7788888888754
No 351
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=93.32 E-value=0.033 Score=52.98 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=19.2
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
.+++ -|.+|+||||+...|+..+.
T Consensus 47 ~iaI-vG~nGsGKSTLL~~I~Gl~~ 70 (608)
T 3szr_A 47 AIAV-IGDQSSGKSSVLEALSGVAL 70 (608)
T ss_dssp CEEC-CCCTTSCHHHHHHHHHSCC-
T ss_pred eEEE-ECCCCChHHHHHHHHhCCCC
Confidence 3444 48899999999999998875
No 352
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.29 E-value=0.057 Score=40.99 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=27.5
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
.++.|..|+|||++|..++.... ..+..++ +++.
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~--~~~~~~v-~~~~ 60 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGR--NAQGEFV-YREL 60 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSST--TTTSCCE-EEEC
T ss_pred EEEECCCCCCHHHHHHHHHHhCC--ccCCCEE-EECC
Confidence 45668899999999999998887 6677776 7764
No 353
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.25 E-value=0.03 Score=53.04 Aligned_cols=40 Identities=43% Similarity=0.563 Sum_probs=31.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
+..++++ |.+|+||||+...|+..+. ....+|.+-+.|..
T Consensus 369 Ge~~~iv-G~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~i~ 408 (587)
T 3qf4_A 369 GSLVAVL-GETGSGKSTLMNLIPRLID--PERGRVEVDELDVR 408 (587)
T ss_dssp TCEEEEE-CSSSSSHHHHHHTTTTSSC--CSEEEEEESSSBGG
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCcc--CCCcEEEECCEEcc
Confidence 4445554 8999999999999999998 77778887666554
No 354
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.23 E-value=0.27 Score=43.25 Aligned_cols=67 Identities=21% Similarity=0.198 Sum_probs=40.1
Q ss_pred ccEEEEcCCCCCChH-------HHHHHHHhhcCCCcEEEEecCCchh---hHHHHHHHHHHHHhc--CCCeeEEEecccc
Q psy11347 160 LEYLLIDTPPGTSDE-------HLSLVQYLKGLPDIGAIVVTTPQEV---SLLDVRKEIDFCRKV--NIPIIGVVENMAT 227 (294)
Q Consensus 160 yd~IiiD~p~~~~~~-------~~~~~~~l~~~~ad~vliv~~~~~~---s~~~~~~~l~~l~~~--~~~~~~vvvN~~~ 227 (294)
+++.++|+|+..... .......+. ..+|.+++|.+.+.. +......++..+... +.+ +.+|.|++|
T Consensus 214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~-~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~p-iilV~NK~D 291 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISERNEIEKQAILALR-YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP-FLVVINKID 291 (357)
T ss_dssp EEEEEEECTTTSSSCSTTSCHHHHHHHHGGG-GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSC-EEEEECCTT
T ss_pred ceEEEEeCCCccccchhhhhHHHHHHHHHHH-hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCC-EEEEEECcc
Confidence 578899998643210 111222221 358989999886543 466666666666542 344 568899988
Q ss_pred c
Q psy11347 228 F 228 (294)
Q Consensus 228 ~ 228 (294)
.
T Consensus 292 l 292 (357)
T 2e87_A 292 V 292 (357)
T ss_dssp T
T ss_pred c
Confidence 3
No 355
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.22 E-value=0.093 Score=44.99 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=27.4
Q ss_pred ChHHHHhhhccCc-eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 35 GIELVKSHLSNVK-HKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 35 ~~~~i~~~~~~~~-~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
....|++.+.... .. .++.|..|+||||++..++..+.
T Consensus 29 ~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 29 TIDRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp HHHHHHHHHHSCCCCC-EEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCe-EEEECcCCCCHHHHHHHHHHHhc
Confidence 3445555554422 23 66779999999999999999986
No 356
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.21 E-value=0.038 Score=43.37 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=16.4
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+.++.|-.|+||||++..|+..+.
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 556668899999999999988776
No 357
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.17 E-value=0.074 Score=49.79 Aligned_cols=30 Identities=33% Similarity=0.564 Sum_probs=23.2
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcE
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDV 81 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~V 81 (294)
+..+.|.+|+||||+...|+..+. ....+|
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i 343 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE--PTEGKI 343 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC--CSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCeEE
Confidence 444558999999999999999887 544443
No 358
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.11 E-value=0.067 Score=47.05 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=30.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCC---CCcEEEEecC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNE---SVDVGVLDLD 87 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~---g~~VlliD~D 87 (294)
....++.|..|+||||++..++..+. .. +..++.+++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLH--KKFLGKFKHVYINTR 85 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHH--HHTCSSCEEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HHhcCCceEEEEECC
Confidence 34566779999999999999999987 44 6778888764
No 359
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.09 E-value=0.066 Score=45.79 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=25.2
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
+.+.++.|-.|+||||++..|+..+. ...+++.|
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~------~~~~i~~D 35 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNP------GFYNINRD 35 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST------TEEEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCC------CcEEeccc
Confidence 35667779999999999999887432 24566665
No 360
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.09 E-value=0.54 Score=43.68 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=25.7
Q ss_pred eEEEEEecCCCchHHHHHHHH--HHHHhhcCCCCcEEEEecCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLL--ARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~L--A~~la~~~~g~~VlliD~D~ 88 (294)
..+..+.|.+|+||||++..+ +..+. . +...++++...
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~--~-~~g~i~v~g~~ 78 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIE--F-DEPGVFVTFEE 78 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH--H-CCCEEEEESSS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHh--C-CCCEEEEEEeC
Confidence 344555589999999999994 55555 2 44566676543
No 361
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.03 E-value=0.067 Score=42.37 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+.++.|-.|+||||++..||..+.
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 445557889999999999998876
No 362
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.03 E-value=0.056 Score=42.96 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=24.3
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
.+.++.|..|+||||++..||..+. ..++|.|
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~-------~~~i~~d 44 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG-------FTHLSTG 44 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT-------CEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC-------CeEEcHH
Confidence 3455568899999999999998876 3456664
No 363
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.75 E-value=0.084 Score=42.24 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=20.9
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
.+.++.|..|+||||++..|+..+.
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3555668899999999999998876
No 364
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.74 E-value=1.7 Score=38.45 Aligned_cols=21 Identities=48% Similarity=0.586 Sum_probs=17.0
Q ss_pred EEEEecCCCchHHHHHHHHHHH
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARV 71 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~ 71 (294)
++++ |..|+||||+...|...
T Consensus 4 v~IV-G~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIV-GLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEE-CCSSSSHHHHHHHHHHH
T ss_pred EEEE-CCCCCCHHHHHHHHhCC
Confidence 4555 88899999999888765
No 365
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.72 E-value=0.087 Score=42.13 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=24.4
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
+..+.|..|+||||++..||..+. +.++|.|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg-------~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG-------VPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-------CCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-------Cceeccc
Confidence 455668899999999999998776 4566766
No 366
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.60 E-value=0.072 Score=42.58 Aligned_cols=25 Identities=28% Similarity=0.626 Sum_probs=20.0
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
.+..+.|.+|+||||++..|+..+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3555568899999999999998753
No 367
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=92.58 E-value=0.29 Score=44.83 Aligned_cols=64 Identities=8% Similarity=-0.054 Sum_probs=33.1
Q ss_pred ccEEEEcCCCCCChH-HHH------HHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDE-HLS------LVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~-~~~------~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+++.|+|+|+..... ... ....+ ..+|.+++|++.+...-.....+++.+.. ..+.+|+||.|.
T Consensus 272 ~~v~liDT~G~~~~~~~ve~~gi~~~~~~~--~~aD~vl~VvD~s~~~~~~~~~i~~~l~~---~piivV~NK~Dl 342 (462)
T 3geh_A 272 IPVQVLDTAGIRETSDQVEKIGVERSRQAA--NTADLVLLTIDAATGWTTGDQEIYEQVKH---RPLILVMNKIDL 342 (462)
T ss_dssp EEEEECC--------------------CCC--CSCSEEEEEEETTTCSCHHHHHHHHHHTT---SCEEEEEECTTS
T ss_pred EEEEEEECCccccchhHHHHHHHHHHhhhh--hcCCEEEEEeccCCCCCHHHHHHHHhccC---CcEEEEEECCCC
Confidence 778999998632210 000 11112 57899999988765322233444554443 346788999985
No 368
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.57 E-value=0.082 Score=46.31 Aligned_cols=34 Identities=38% Similarity=0.494 Sum_probs=26.7
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
.+.++.|..|+||||++..||..+. .-+||+|--
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~-------~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP-------LEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC-------EEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC-------CcEEccccc
Confidence 4666778999999999999987554 467888853
No 369
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.54 E-value=0.077 Score=42.37 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=24.1
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
+.++.|-.|+||||++..|+..|. |.++..++.
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l~----g~~~~~~~~ 38 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESIP----ANTIKYLNF 38 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTSC----GGGEEEEES
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHC----CCceEEEec
Confidence 445557889999999999987663 456666553
No 370
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.53 E-value=0.088 Score=41.92 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.1
Q ss_pred EEEecCCCchHHHHHHHHHHHHh
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la 73 (294)
.++.|-.|+||||++..||..|.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEECCCccCHHHHHHHHHHhcC
Confidence 45568899999999999999888
No 371
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=92.52 E-value=0.095 Score=48.28 Aligned_cols=67 Identities=7% Similarity=-0.138 Sum_probs=33.1
Q ss_pred ccEEEEcCCCCCChHH-H------HHHHHhhcCCCcEEEEecCCchh-hHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEH-L------SLVQYLKGLPDIGAIVVTTPQEV-SLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~-~------~~~~~l~~~~ad~vliv~~~~~~-s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|||+...... . .....+ ..+|.+|+|++.+.. +..........+.......+.+|+||+|.
T Consensus 281 ~~l~liDT~G~~~~~~~ve~~gi~~~~~~~--~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl 355 (476)
T 3gee_A 281 TMFRLTDTAGLREAGEEIEHEGIRRSRMKM--AEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDR 355 (476)
T ss_dssp EEEEEEC--------------------CCC--SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTS
T ss_pred eEEEEEECCCCCcchhHHHHHHHHHHHhhc--ccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCC
Confidence 7899999996422110 0 011122 579999999987653 22212223333333333446788999984
No 372
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.44 E-value=1.3 Score=38.44 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=20.6
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la 73 (294)
..++.|..|+||||++..+|..+.
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCchHHHHHHHHHHHHh
Confidence 345568889999999999999987
No 373
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.40 E-value=0.064 Score=43.41 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=21.3
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
..+.++.|..|+||||++..|+..+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34556679999999999999988775
No 374
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.38 E-value=0.06 Score=43.33 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=20.2
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+.++.|..|+||||++..|+..+.
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCc
Confidence 456668899999999999998775
No 375
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.33 E-value=0.1 Score=40.39 Aligned_cols=34 Identities=32% Similarity=0.428 Sum_probs=24.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
|..|++ .|-.|+||||++..||..|. . -++|+|.
T Consensus 7 ~~~i~l-~G~~GsGKSTva~~La~~lg--~-----~~id~D~ 40 (168)
T 1zuh_A 7 MQHLVL-IGFMGSGKSSLAQELGLALK--L-----EVLDTDM 40 (168)
T ss_dssp -CEEEE-ESCTTSSHHHHHHHHHHHHT--C-----CEEEHHH
T ss_pred cceEEE-ECCCCCCHHHHHHHHHHHhC--C-----CEEEChH
Confidence 444554 57789999999999998887 3 3567663
No 376
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=92.21 E-value=0.12 Score=48.47 Aligned_cols=50 Identities=20% Similarity=0.271 Sum_probs=31.5
Q ss_pred hHHHHhhhccC---ceEEEEEecCCCchHHHHHHHHHH----HHhhcCCCCcEEEEecC
Q psy11347 36 IELVKSHLSNV---KHKVLVLSGKGGVGKSTFTNLLAR----VLAKSNESVDVGVLDLD 87 (294)
Q Consensus 36 ~~~i~~~~~~~---~~~i~v~s~kGGvGKTTia~~LA~----~la~~~~g~~VlliD~D 87 (294)
...|.+.+... ...+..+.|-||+||||+|..++. ... ..-.-++.++..
T Consensus 137 ~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~--~~F~~~~wv~vs 193 (549)
T 2a5y_B 137 VDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIG--INYDSIVWLKDS 193 (549)
T ss_dssp HHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBT--TTBSEEEEEECC
T ss_pred HHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHh--ccCCcEEEEEEC
Confidence 55555555432 234555568899999999999985 333 222356666553
No 377
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.13 E-value=0.11 Score=40.07 Aligned_cols=23 Identities=43% Similarity=0.459 Sum_probs=19.7
Q ss_pred EEEecCCCchHHHHHHHHHHHHh
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la 73 (294)
.++.|..|+||||++..|+..+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45568899999999999998876
No 378
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.12 E-value=0.094 Score=42.54 Aligned_cols=31 Identities=42% Similarity=0.637 Sum_probs=23.0
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
.+.++.|..|+||||++..|+. + | ..++|+|
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-l-----g--~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-L-----G--INVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-T-----T--CEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-c-----C--CEEEEcc
Confidence 4566668899999999988875 3 3 3567776
No 379
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=92.10 E-value=0.41 Score=42.58 Aligned_cols=66 Identities=8% Similarity=-0.047 Sum_probs=39.4
Q ss_pred ccEEEEcCCCCCCh------HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCC----CeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSD------EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNI----PIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~------~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~----~~~~vvvN~~~~ 228 (294)
..++++|+|+-... ....++..+ ..+|.++.|++... .+.....+...|...+. +...+++|+.+.
T Consensus 119 ~~i~l~D~pGl~~~a~~~~~~g~~~l~~i--~~ad~il~vvD~~~-p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 119 AKIQMLDLPGIIDGAKDGRGRGKQVIAVA--RTCNLLFIILDVNK-PLHHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEEECGGGCCC-----CHHHHHHHHH--HHCSEEEEEEETTS-HHHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred cEEEEEeCCCccCCchhhhHHHHHHHHHH--HhcCccccccccCc-cHHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 67899999953321 112233333 57999999987753 34555555556654432 234578888763
No 380
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.09 E-value=0.13 Score=48.52 Aligned_cols=35 Identities=37% Similarity=0.609 Sum_probs=31.2
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVL 84 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vlli 84 (294)
..+.++.|..|+||||++..++..+. ..|.+|++.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~--~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAE--SLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEe
Confidence 45777789999999999999999999 789999987
No 381
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.07 E-value=0.12 Score=43.21 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=30.8
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
-.++.|..|+|||+++..++..+. ..+..++.+++..
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAA 67 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGG
T ss_pred CEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCC
Confidence 455678999999999999999888 6778888888754
No 382
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.05 E-value=0.94 Score=38.93 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=25.3
Q ss_pred hHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 36 IELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 36 ~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
...|++.+.....-..++.|..|+||||++..||..+.
T Consensus 6 ~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~ 43 (305)
T 2gno_A 6 LETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVE 43 (305)
T ss_dssp HHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCc
Confidence 33444444433333566678899999999999988643
No 383
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=92.04 E-value=0.18 Score=41.98 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=38.1
Q ss_pred CceEEEEEecC-CCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 46 VKHKVLVLSGK-GGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 46 ~~~~i~v~s~k-GGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
+||-|.|++|- +|.||=.+|+.|+..|. .+|++|..+..||.-
T Consensus 22 ~mKyIfVTGGVvSglGKGi~aaSlG~LLk--~rG~~Vt~~KiDPYl 65 (294)
T 2c5m_A 22 SMKYILVTGGVISGIGKGIIASSVGTILK--SCGLHVTSIKIDPYI 65 (294)
T ss_dssp CCEEEEEEECSSTTSCHHHHHHHHHHHHH--TTTCCEECCEEECBC
T ss_pred ceEEEEEcCccccccchHHHHHHHHHHHH--HCCCeeEEEecCCce
Confidence 36777777776 89999999999999999 999999999999864
No 384
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.03 E-value=0.13 Score=44.45 Aligned_cols=37 Identities=32% Similarity=0.452 Sum_probs=29.4
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
.-.++.|..|+|||+++..+|..+. ...|.+|.++.+
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~-~~~g~~v~~~~~ 189 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS-EKKGVSTTLLHF 189 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH-HHSCCCEEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEH
Confidence 4455668899999999999999876 135788988866
No 385
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.01 E-value=0.099 Score=47.63 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=30.0
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
-.++.|..|+||||++..++..+.....+.+++.+++.
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 45667889999999999999998722237888888764
No 386
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.00 E-value=0.073 Score=42.15 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=20.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+.++.|.+|+||||+...|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 455669999999999999999886
No 387
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.98 E-value=0.17 Score=39.10 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=24.2
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCC
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNES 78 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g 78 (294)
....+..+.|..|+||||+...|+..+. ..|
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~--~~G 61 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG--HQG 61 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTT--CCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhCC--CCC
Confidence 3444555668999999999999999986 544
No 388
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.97 E-value=0.12 Score=40.89 Aligned_cols=23 Identities=30% Similarity=0.677 Sum_probs=19.7
Q ss_pred EEEecCCCchHHHHHHHHHHHHh
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la 73 (294)
..+.|.+|+||||+...|+..+.
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 34558999999999999999885
No 389
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.92 E-value=0.028 Score=47.19 Aligned_cols=37 Identities=32% Similarity=0.362 Sum_probs=27.2
Q ss_pred EEEEecCCCchHHHHHHHHHHH--HhhcCCCCcEEEEecCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARV--LAKSNESVDVGVLDLDI 88 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~--la~~~~g~~VlliD~D~ 88 (294)
+..+-|.+|+||||+...|+.. +. ....+|.+-+.|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~~ 69 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGDPEYT--VERGEILLDGENI 69 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEEC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEEC
Confidence 4445588999999999999997 45 4556777755544
No 390
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.91 E-value=0.11 Score=41.58 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=23.3
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
+.++.|..|+||||++..|+..+. ..++|+|
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g-------~~~i~~d 47 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYS-------FVHLSAG 47 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS-------CEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-------ceEEeHH
Confidence 455568899999999999987655 2556665
No 391
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.84 E-value=1.1 Score=35.39 Aligned_cols=89 Identities=17% Similarity=0.153 Sum_probs=54.4
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+...... .....+ ..+|.+|+|.+.+. .++..+..++..+.... ...+.+|.|+.|.. ..
T Consensus 78 ~~l~i~Dt~G~~~~~~-~~~~~~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~-----~~ 149 (201)
T 2hup_A 78 VKLQIWDTAGQERFRT-ITQSYY--RSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS-----EL 149 (201)
T ss_dssp EEEEEECCTTCGGGHH-HHHHHH--TTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GG
T ss_pred EEEEEEECCCcHhHHH-HHHHHH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc-----cc
Confidence 7899999996433211 122233 57999999988654 67777777777776532 22456889998842 11
Q ss_pred CccCCCCchhHHHHHhhcCC-cee
Q psy11347 237 SEIFPKDSGGAEKMCAELSV-PFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~-~~l 259 (294)
..+ ..+.++++.+..+. +++
T Consensus 150 ~~v---~~~~~~~~~~~~~~~~~~ 170 (201)
T 2hup_A 150 REV---SLAEAQSLAEHYDILCAI 170 (201)
T ss_dssp CCS---CHHHHHHHHHHTTCSEEE
T ss_pred ccc---CHHHHHHHHHHcCCCEEE
Confidence 111 13445667677776 444
No 392
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.82 E-value=0.11 Score=43.01 Aligned_cols=26 Identities=38% Similarity=0.579 Sum_probs=21.8
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+.+..+.|..|+||||++..||..|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44566678899999999999998886
No 393
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.75 E-value=0.078 Score=42.99 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=24.9
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.+.++.|..|+||||++..||..+. ..++|.|.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g-------~~~~~~d~ 36 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS-------MIYVDTGA 36 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT-------CEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC-------CceecCCh
Confidence 3556678899999999999887665 34677763
No 394
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.75 E-value=0.13 Score=40.95 Aligned_cols=32 Identities=41% Similarity=0.527 Sum_probs=22.3
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.+.++.|..|+||||++..||.. | ..++|.|.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~------g--~~~id~d~ 40 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW------G--YPVLDLDA 40 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT------T--CCEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC------C--CEEEcccH
Confidence 34455588999999998877653 3 44677763
No 395
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=91.72 E-value=0.61 Score=36.78 Aligned_cols=89 Identities=13% Similarity=0.066 Sum_probs=52.5
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC-----CCeeEEEeccccccCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN-----IPIIGVVENMATFVCPKC 233 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~-----~~~~~vvvN~~~~~~~~~ 233 (294)
+.+.|+|+|+... ...... ..-..+|.+|++.+.+. .++..+..++..+.... ...+.+|.|+.|..
T Consensus 73 ~~~~l~Dt~G~~~--~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~---- 145 (208)
T 2yc2_C 73 VELFLLDTAGSDL--YKEQIS-QYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP---- 145 (208)
T ss_dssp EEEEEEETTTTHH--HHHHHS-TTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------
T ss_pred EEEEEEECCCcHH--HHHHHH-HHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc----
Confidence 7899999995422 111211 11157899999988754 56677777777776532 22467899999842
Q ss_pred CC-CCccCCCCchhHHHHHhhcCCcee
Q psy11347 234 TK-PSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 234 ~~-~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
. ...+ ..+...++.+.++.+++
T Consensus 146 -~~~~~v---~~~~~~~~~~~~~~~~~ 168 (208)
T 2yc2_C 146 -PQRHQV---RLDMAQDWATTNTLDFF 168 (208)
T ss_dssp -----CC---CHHHHHHHHHHTTCEEE
T ss_pred -hhhccC---CHHHHHHHHHHcCCEEE
Confidence 1 1122 13456677777776554
No 396
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.64 E-value=0.088 Score=46.34 Aligned_cols=40 Identities=25% Similarity=0.266 Sum_probs=31.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCC------CCcEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNE------SVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~------g~~VlliD~D~ 88 (294)
.....++.|..|+||||++..++..+. .. +..++.+++..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~--~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLE--ARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHH--HHHHHHTCCEEEEEEETTT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH--HHHhccCCCeEEEEEECCc
Confidence 344566779999999999999999987 43 66777777644
No 397
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=91.61 E-value=0.25 Score=44.34 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=43.0
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhh-HHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVS-LLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s-~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+... ....+...+ ..+|.+|++++.+... ...+...+..+...+.+.+.+++|++|.
T Consensus 81 ~~i~iiDtPGh~~-f~~~~~~~~--~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl 147 (408)
T 1s0u_A 81 RRVSFVDSPGHET-LMATMLSGA--SLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDL 147 (408)
T ss_dssp EEEEEEECSSHHH-HHHHHHTTC--SCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTS
T ss_pred cEEEEEECCCHHH-HHHHHHHhH--hhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCC
Confidence 6799999996321 111122112 4679999999877532 4445555666666777667799999984
No 398
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.60 E-value=0.11 Score=42.67 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=22.0
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
..+.++.|.+|+||||+...|+..+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 44667779999999999999998775
No 399
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.52 E-value=0.1 Score=41.88 Aligned_cols=24 Identities=42% Similarity=0.516 Sum_probs=20.1
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+.++.|.+|+||||+...|+..+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 445568999999999999998775
No 400
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.44 E-value=0.14 Score=44.34 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=28.7
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
-+.++.|..|+||||+...|+... .++|+.++.-|.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~----~~~~~aVi~~d~ 40 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ----HGYKIAVIENEF 40 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC----CCCCEEEECSSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc----CCCcEEEEEecC
Confidence 356667899999999999988753 478999997764
No 401
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.41 E-value=0.11 Score=42.54 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=19.4
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+.++.|..|+||||++..||..+.
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 445558899999999999988665
No 402
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.38 E-value=0.085 Score=48.37 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=30.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCC-cEEEEecCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESV-DVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~-~VlliD~D~ 88 (294)
+.+++++ |.+|+||||+...|+..+. ..+. +++++|.|+
T Consensus 138 Ge~v~Iv-GpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~~ 177 (460)
T 2npi_A 138 GPRVVIV-GGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLDP 177 (460)
T ss_dssp CCCEEEE-ESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECCT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCccc--ccCCceeEEEcCCc
Confidence 4555555 8899999999999999988 5566 756677765
No 403
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.34 E-value=0.14 Score=42.01 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+..|++ .|..|+||||++..||..+.
T Consensus 16 ~~~I~l-~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVL-LGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEE-ECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHhC
Confidence 344444 57789999999999999886
No 404
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.34 E-value=0.2 Score=46.01 Aligned_cols=38 Identities=34% Similarity=0.393 Sum_probs=27.4
Q ss_pred hHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 36 IELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 36 ~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+..+...+....+.-.++.|..|+|||+++..||..+.
T Consensus 189 i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 44455555443333346679999999999999999997
No 405
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.31 E-value=1.2 Score=38.92 Aligned_cols=24 Identities=42% Similarity=0.695 Sum_probs=21.3
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la 73 (294)
..++.|..|+||||++..+|..+.
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 456779999999999999999987
No 406
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=91.28 E-value=0.43 Score=43.94 Aligned_cols=63 Identities=17% Similarity=0.070 Sum_probs=36.8
Q ss_pred ccEEEEcCCCCC-ChH-------HHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGT-SDE-------HLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~-~~~-------~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.++|+|+|+-. ... .......+ ..+|.+|+|++.+. .+... ..+++.+ .+.+ +.+|+||+|.
T Consensus 291 ~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~--~~aD~vl~VvD~s~~~s~~~-~~il~~l--~~~p-iivV~NK~DL 362 (482)
T 1xzp_A 291 ILFRIVDTAGVRSETNDLVERLGIERTLQEI--EKADIVLFVLDASSPLDEED-RKILERI--KNKR-YLVVINKVDV 362 (482)
T ss_dssp EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH--HHCSEEEEEEETTSCCCHHH-HHHHHHH--TTSS-EEEEEEECSS
T ss_pred eEEEEEECCCccccchhhHHHHHHHHHHHHh--hcccEEEEEecCCCCCCHHH-HHHHHHh--cCCC-EEEEEECccc
Confidence 678999999643 110 01122333 46899999988644 23333 2344444 2334 6799999984
No 407
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.21 E-value=0.2 Score=41.51 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
...+.++.|..|+||||++..|+..+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344566678899999999999997765
No 408
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.19 E-value=0.25 Score=45.16 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=28.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCC-cEEEE
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESV-DVGVL 84 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~-~Vlli 84 (294)
..++.|..|+||||++..++..|. ..+. +|+++
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~--~~~~~~il~~ 80 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALI--STGETGIILA 80 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH--HTTCCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH--hcCCceEEEe
Confidence 777889999999999999999998 6676 77776
No 409
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.16 E-value=0.15 Score=41.06 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=19.2
Q ss_pred EEEecCCCchHHHHHHHHHHHHh
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la 73 (294)
.++.|..|+||||++..|+..+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 34568899999999999988765
No 410
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.16 E-value=0.15 Score=41.43 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=19.9
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
..|++ .|..|+||||++..||..+.
T Consensus 6 ~~I~l-~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLIL-IGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEE-EECTTSSHHHHHHHHHHHHC
T ss_pred eEEEE-ECCCCCCHHHHHHHHHHHhC
Confidence 34444 47789999999999998876
No 411
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.15 E-value=0.35 Score=45.91 Aligned_cols=24 Identities=46% Similarity=0.775 Sum_probs=20.8
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la 73 (294)
|..+-|.+|+||||+...|+..+.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 455568999999999999999987
No 412
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.12 E-value=0.18 Score=46.24 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=31.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
++.+.++.|-.|+||||++..|+..+. ..+.++..++.|
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~--~~~~~t~~~~~d 76 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN--FIGVPTREFNVG 76 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh--ccCCCceEEecc
Confidence 455667778899999999999999998 677777766543
No 413
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.09 E-value=0.13 Score=41.35 Aligned_cols=27 Identities=41% Similarity=0.532 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
...+..+.|.+|+||||+...|+..+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 334555558999999999999999875
No 414
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.04 E-value=0.19 Score=44.66 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=31.3
Q ss_pred ceEEEEE--ecCCCchHHHHHHHHHHHHhhcCC------CCcEEEEecCC
Q psy11347 47 KHKVLVL--SGKGGVGKSTFTNLLARVLAKSNE------SVDVGVLDLDI 88 (294)
Q Consensus 47 ~~~i~v~--s~kGGvGKTTia~~LA~~la~~~~------g~~VlliD~D~ 88 (294)
.....++ .|.+|+||||++..++..+. .. +..++.+++..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVS--EAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHH--HHHHHTTCCEEEEEEEGGG
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHH--HHHhccCCceeEEEEECCC
Confidence 3446666 89999999999999999887 42 56788888743
No 415
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.81 E-value=0.13 Score=41.80 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=19.6
Q ss_pred EEEecCCCchHHHHHHHHHHHHh
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la 73 (294)
.++.|..|+||||++..||..|.
T Consensus 8 I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 8 VMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 44557889999999999999887
No 416
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=90.79 E-value=0.23 Score=40.02 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=25.4
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhh--c-CCC-CcEEEEecC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAK--S-NES-VDVGVLDLD 87 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~--~-~~g-~~VlliD~D 87 (294)
|.++.|..|+|||+.+..++..+.. . ..| .+|.+..+|
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 5667789999999999887666520 0 245 555556554
No 417
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.71 E-value=0.067 Score=45.63 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=29.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
+..+-|.+|+||||+...|+..+. ....+|.+-+.+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMP 85 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 445559999999999999999998 7777888766554
No 418
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.70 E-value=0.13 Score=44.83 Aligned_cols=34 Identities=18% Similarity=0.341 Sum_probs=28.0
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
..+.++.|..|+||||++..+|.. . |.+|+++++
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-~----G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-L----GGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-H----HTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-C----CCCEEEEEe
Confidence 345578899999999999999876 3 668888888
No 419
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.69 E-value=0.71 Score=35.41 Aligned_cols=89 Identities=11% Similarity=0.128 Sum_probs=51.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+...... .....+ ..+|.++++.+.+. .++..+..++..+.... ...+.+|.|+.|.. ..
T Consensus 60 ~~~~~~Dt~G~~~~~~-~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~ 131 (180)
T 2g6b_A 60 VKLQMWDTAGQERFRS-VTHAYY--RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA-----HE 131 (180)
T ss_dssp EEEEEEECCCC---------CCG--GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT-----SC
T ss_pred EEEEEEeCCCcHHHHH-HHHHHc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC-----cc
Confidence 7899999996432111 111122 46898998887654 56666677777665432 22467899999842 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+ ..+..+++.+..+++++
T Consensus 132 ~~~---~~~~~~~~~~~~~~~~~ 151 (180)
T 2g6b_A 132 RVV---KREDGEKLAKEYGLPFM 151 (180)
T ss_dssp CCS---CHHHHHHHHHHHTCCEE
T ss_pred ccc---CHHHHHHHHHHcCCeEE
Confidence 111 13345666666676555
No 420
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.63 E-value=0.078 Score=44.34 Aligned_cols=39 Identities=33% Similarity=0.489 Sum_probs=30.3
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
.+..+-|.+|+||||+...|+..+. ....+|.+-+.|..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~~ 74 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLA 74 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhh
Confidence 3444558999999999999999998 77778877555543
No 421
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=90.52 E-value=0.28 Score=42.55 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=27.9
Q ss_pred HHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 38 LVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 38 ~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
.|+..+........++.|..|+|||+++..++..|.
T Consensus 35 ~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 35 PIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp HHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 344455454555567889999999999999999996
No 422
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.48 E-value=0.2 Score=44.97 Aligned_cols=34 Identities=38% Similarity=0.596 Sum_probs=26.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
+.+.+++|..|+||||++..||..+. . -+|.+|-
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~--~-----~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN--G-----EVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT--E-----EEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC--C-----eEeecCc
Confidence 34667788999999999999999887 2 3566663
No 423
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.36 E-value=0.18 Score=39.44 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+.++.|.+|+||||+...|...|.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 677779999999999999999887
No 424
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=90.33 E-value=0.22 Score=44.22 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=20.9
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVL 84 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vlli 84 (294)
.+.++-|--|+||||++..|+..|. ..| |++.
T Consensus 50 ~fIt~EG~dGsGKTT~~~~Lae~L~--~~g--vv~t 81 (376)
T 1of1_A 50 LRVYIDGPHGMGKTTTTQLLVALGS--RDD--IVYV 81 (376)
T ss_dssp EEEEECSSTTSSHHHHHHHHHC------CC--EEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh--hCC--EEEE
Confidence 3455556669999999999999998 666 5444
No 425
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.33 E-value=0.66 Score=35.80 Aligned_cols=89 Identities=13% Similarity=0.149 Sum_probs=48.8
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccccCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATFVCPKCTKP 236 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~~~~~~~~~ 236 (294)
+.+.|+|+|+...... .....+ ..+|.+|++.+.+. .++..+..++..+.... ...+.+|.|+.|.. ..
T Consensus 57 ~~~~l~Dt~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~ 128 (183)
T 2fu5_C 57 IKLQIWDTAGQERFRT-ITTAYY--RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN-----DK 128 (183)
T ss_dssp EEEEEEEC----------CCTTT--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC-----SC
T ss_pred EEEEEEcCCCChhhhh-hHHHHH--hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC-----cc
Confidence 7899999996432110 011112 57899999987754 56777777777776531 22467889999842 11
Q ss_pred CccCCCCchhHHHHHhhcCCcee
Q psy11347 237 SEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
..+ ..+..+++.+..+++++
T Consensus 129 ~~v---~~~~~~~~~~~~~~~~~ 148 (183)
T 2fu5_C 129 RQV---SKERGEKLALDYGIKFM 148 (183)
T ss_dssp CCS---CHHHHHHHHHHHTCEEE
T ss_pred CcC---CHHHHHHHHHHcCCeEE
Confidence 121 13455667767776554
No 426
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.29 E-value=0.055 Score=46.84 Aligned_cols=41 Identities=29% Similarity=0.327 Sum_probs=31.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
+.++++ .|.+|+||||+...|+..+. ....+|.+-+.|...
T Consensus 80 Ge~vai-vG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~i~~ 120 (306)
T 3nh6_A 80 GQTLAL-VGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQDISQ 120 (306)
T ss_dssp TCEEEE-ESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEETTS
T ss_pred CCEEEE-ECCCCchHHHHHHHHHcCCC--CCCcEEEECCEEccc
Confidence 344444 58999999999999999998 777788886666543
No 427
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.26 E-value=0.14 Score=41.80 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=19.3
Q ss_pred EEEEEecCCCchHHHHHHHHHHHH
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVL 72 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~l 72 (294)
.+..+.|.+|+||||+...|+..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 344555899999999999999855
No 428
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.24 E-value=0.36 Score=41.73 Aligned_cols=45 Identities=27% Similarity=0.247 Sum_probs=33.3
Q ss_pred ChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 35 GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 35 ~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
-+..|.+ +.. .+.++.|..|+||||++..++..+. . +++++++..
T Consensus 21 el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~ 65 (357)
T 2fna_A 21 EIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRK 65 (357)
T ss_dssp HHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGG
T ss_pred HHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchh
Confidence 3445555 554 3777789999999999999988766 3 478888753
No 429
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.24 E-value=0.088 Score=43.45 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=26.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEE
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV 83 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vll 83 (294)
+.++++ -|.+|+||||+...|+..+. ....+|.+
T Consensus 34 Ge~~~i-~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~ 67 (229)
T 2pze_A 34 GQLLAV-AGSTGAGKTSLLMMIMGELE--PSEGKIKH 67 (229)
T ss_dssp TCEEEE-ECCTTSSHHHHHHHHTTSSC--CSEEEEEE
T ss_pred CCEEEE-ECCCCCCHHHHHHHHhCCCc--CCccEEEE
Confidence 344444 48899999999999999988 65666654
No 430
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.23 E-value=0.21 Score=40.81 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.2
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+.++.|..|+||||++..|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 356668899999999999998776
No 431
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.22 E-value=0.088 Score=44.44 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=29.3
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
+..+-|.+|+||||+...|+..+. ....+|.+-+.|.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 70 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 444559999999999999999988 6777887755444
No 432
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=90.21 E-value=0.25 Score=46.46 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=34.4
Q ss_pred cChHHHHhhhcc--CceEEEEEecCCCchHHHHHHHHHHHH---hhcCCCCcEEEEecCC
Q psy11347 34 PGIELVKSHLSN--VKHKVLVLSGKGGVGKSTFTNLLARVL---AKSNESVDVGVLDLDI 88 (294)
Q Consensus 34 ~~~~~i~~~~~~--~~~~i~v~s~kGGvGKTTia~~LA~~l---a~~~~g~~VlliD~D~ 88 (294)
.....|.+.+.. ....++.+.|-||+||||++..++... . ......|..++.+.
T Consensus 131 ~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 131 KLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLE-GCFPGGVHWVSVGK 189 (591)
T ss_dssp HHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHH-HHCTTCEEEEEEES
T ss_pred HHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHH-hhCCCceEEEECCC
Confidence 334556666642 234566677999999999999987543 2 01223588877754
No 433
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.16 E-value=0.18 Score=40.69 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=18.5
Q ss_pred EEEecCCCchHHHHHHHHHHHHh
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la 73 (294)
.++.|..|+||||++..||..+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 34568899999999999987654
No 434
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.15 E-value=0.26 Score=39.02 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=25.0
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.++.|..|+||||+|..|| . . +.+++++++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la---~--~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI---G--D-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH---C--S-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHH---h--c-CCCeEEEecCC
Confidence 3556788999999998876 3 3 67899999854
No 435
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.06 E-value=0.14 Score=45.33 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=26.4
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD 85 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD 85 (294)
..+..+.|..|+||||+...|+..+. .....|.+-|
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~--~~~g~I~ie~ 210 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP--FDQRLITIED 210 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC--TTSCEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC--CCceEEEECC
Confidence 33445558899999999999999888 6555555543
No 436
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.03 E-value=0.66 Score=37.06 Aligned_cols=89 Identities=17% Similarity=0.253 Sum_probs=52.4
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc---CCCeeEEEeccccccCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV---NIPIIGVVENMATFVCPKCTK 235 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~---~~~~~~vvvN~~~~~~~~~~~ 235 (294)
+.+.|+|+|+.... .......+ ..+|.+|++.+.+. .++..+..++..+... ....+.+|+|+.|.. .
T Consensus 84 ~~l~l~Dt~G~~~~-~~~~~~~~--~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~-----~ 155 (217)
T 2f7s_A 84 VHLQLWDTAGQERF-RSLTTAFF--RDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP-----D 155 (217)
T ss_dssp EEEEEEEEESHHHH-HHHHHHHH--TTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG-----G
T ss_pred EEEEEEECCCcHhH-HhHHHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc-----c
Confidence 78999999963211 11122223 57999999988654 5566666555555432 123467889999842 1
Q ss_pred CCccCCCCchhHHHHHhhcCCcee
Q psy11347 236 PSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 236 ~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
...+ ..+..+++.+..+++++
T Consensus 156 ~~~v---~~~~~~~~~~~~~~~~~ 176 (217)
T 2f7s_A 156 QREV---NERQARELADKYGIPYF 176 (217)
T ss_dssp GCCS---CHHHHHHHHHHTTCCEE
T ss_pred cccc---CHHHHHHHHHHCCCcEE
Confidence 1111 13456677777777655
No 437
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.01 E-value=0.073 Score=44.70 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+.++-|-.|+||||++..|+..|.
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 455558899999999999988876
No 438
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.99 E-value=0.22 Score=42.35 Aligned_cols=32 Identities=38% Similarity=0.455 Sum_probs=22.8
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.+.++.|..|+||||++..|+ .+ | .-++|+|.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~l-----g--~~~id~D~ 107 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NL-----G--AYIIDSDH 107 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HH-----T--CEEEEHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HC-----C--CcEEehhH
Confidence 345556888999999999998 33 3 24577763
No 439
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.88 E-value=0.23 Score=40.09 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=18.7
Q ss_pred EEecCCCchHHHHHHHHHHHHh
Q psy11347 52 VLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 52 v~s~kGGvGKTTia~~LA~~la 73 (294)
++.|..|+||||++..|+..+.
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 4 ILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEESTTSSHHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHHhC
Confidence 5567889999999999998775
No 440
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.83 E-value=0.07 Score=44.33 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=25.4
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEE
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV 83 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vll 83 (294)
.+..+-|.+|+||||+...|+..+. ....+|.+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~ 64 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAI 64 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEE
Confidence 3445558899999999999999987 55556654
No 441
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=89.81 E-value=0.2 Score=40.40 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=22.5
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
|.+.|..+++.-|+||||++..||..|.
T Consensus 4 m~~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 4 MKQIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 3345677778899999999999999887
No 442
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=89.53 E-value=0.23 Score=41.26 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=31.6
Q ss_pred HhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 40 KSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 40 ~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
.+....|++++.|+++.||+|+ .+|..|+ ..|.+|.++|-+..
T Consensus 15 ~~~~~~m~k~vlITGas~gIG~-----~la~~l~--~~G~~V~~~~r~~~ 57 (251)
T 3orf_A 15 VPRGSHMSKNILVLGGSGALGA-----EVVKFFK--SKSWNTISIDFREN 57 (251)
T ss_dssp -------CCEEEEETTTSHHHH-----HHHHHHH--HTTCEEEEEESSCC
T ss_pred cccccccCCEEEEECCCCHHHH-----HHHHHHH--HCCCEEEEEeCCcc
Confidence 4466677899999999999997 7788888 78999999998764
No 443
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=89.48 E-value=0.31 Score=46.57 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=31.4
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD 85 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD 85 (294)
+-++++.|..|.|||++.+++...+. ..+.+||+.-
T Consensus 205 ~~~~lI~GPPGTGKT~ti~~~I~~l~--~~~~~ILv~a 240 (646)
T 4b3f_X 205 KELAIIHGPPGTGKTTTVVEIILQAV--KQGLKVLCCA 240 (646)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEc
Confidence 34788889999999999999999998 7899999874
No 444
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=89.43 E-value=0.31 Score=40.02 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=27.7
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 46 ~~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
+.+.|..+++.-|+||||++..||..|. .-++|.|.
T Consensus 12 ~~~~iI~i~g~~gsGk~~i~~~la~~lg-------~~~~d~~~ 47 (223)
T 3hdt_A 12 NKNLIITIEREYGSGGRIVGKKLAEELG-------IHFYDDDI 47 (223)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHHHT-------CEEECHHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHcC-------CcEEcHHH
Confidence 3456777778899999999999999887 23577653
No 445
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.41 E-value=0.23 Score=39.62 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=21.6
Q ss_pred EEecCCCchHHHHHHHHHHHHhhcCCC
Q psy11347 52 VLSGKGGVGKSTFTNLLARVLAKSNES 78 (294)
Q Consensus 52 v~s~kGGvGKTTia~~LA~~la~~~~g 78 (294)
.+.|.+|+||||+...|+..+. ..|
T Consensus 5 ~i~G~nG~GKTTll~~l~g~~~--~~G 29 (189)
T 2i3b_A 5 FLTGPPGVGKTTLIHKASEVLK--SSG 29 (189)
T ss_dssp EEESCCSSCHHHHHHHHHHHHH--HTT
T ss_pred EEECCCCChHHHHHHHHHhhcc--cCC
Confidence 4458999999999999999998 566
No 446
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.40 E-value=0.27 Score=39.64 Aligned_cols=38 Identities=34% Similarity=0.541 Sum_probs=26.9
Q ss_pred hHHHHhhhccCc-eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 36 IELVKSHLSNVK-HKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 36 ~~~i~~~~~~~~-~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
...|...+.... ....++.|..|+||||++..++..+.
T Consensus 32 ~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 32 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344444444321 23566779999999999999999988
No 447
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=89.33 E-value=0.5 Score=44.91 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=46.4
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhhH-------HHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSL-------LDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s~-------~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.++|+|+|+... ....+...+ ..+|.+|+|++.+...+ ..+...+..+...+++.+.+|+|+++.
T Consensus 245 ~~~~iiDTPG~e~-f~~~~~~~~--~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl 317 (611)
T 3izq_1 245 ANFTIVDAPGHRD-FVPNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN 317 (611)
T ss_dssp CEEEEEECCSSSC-HHHHHTTTS--SCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTT
T ss_pred ceEEEEECCCCcc-cHHHHHHHH--hhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 7899999996543 222222223 68999999999876432 355666667777788777889999984
No 448
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.25 E-value=0.15 Score=41.80 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=13.6
Q ss_pred EEEEEecCCCchHHHHHHHHH-HHHh
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLA-RVLA 73 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA-~~la 73 (294)
.+..+.|..|+||||++..|+ ..+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 345556889999999999999 8765
No 449
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=89.22 E-value=0.31 Score=43.80 Aligned_cols=66 Identities=17% Similarity=0.103 Sum_probs=43.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCchhh-HHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVS-LLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~~s-~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+.. ...-.+...+ ..+|.+|+|++.+... ...+...+..+...+.+.+.+++|++|.
T Consensus 83 ~~i~iiDtPGh~-~f~~~~~~~~--~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl 149 (410)
T 1kk1_A 83 RRVSFIDAPGHE-ALMTTMLAGA--SLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEEECSSHH-HHHHHHHHCG--GGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred cEEEEEECCChH-HHHHHHHhhh--hhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccC
Confidence 579999999642 2122223222 4679999999877532 4455555556666677667788999984
No 450
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=89.14 E-value=0.23 Score=42.74 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=30.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
-.++.|..|+|||++|..++.... ..+..++.+++..
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~~--~~~~~~v~v~~~~ 63 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACSA--RSDRPLVTLNCAA 63 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHSS--CSSSCCCEEECSS
T ss_pred cEEEECCCCchHHHHHHHHHHhCc--ccCCCeEEEeCCC
Confidence 345668999999999999999887 6778888888754
No 451
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.06 E-value=0.19 Score=42.12 Aligned_cols=32 Identities=34% Similarity=0.532 Sum_probs=25.0
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
.+.++.|..|+||||++..||..+. . -++|.|
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg--~-----~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG--Y-----TFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT--C-----EEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC--C-----cEEeCc
Confidence 3455558899999999999999887 2 467765
No 452
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=89.06 E-value=0.46 Score=43.89 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=37.8
Q ss_pred ceEEEEEecC-CCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLSGK-GGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s~k-GGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
+|-|.|++|- +|.||-.+|+.|+..|. .+|++|..+..||.-
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~--~~g~~v~~~k~dpyl 45 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLK--RRGYNVTAVKIDPYI 45 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHH--HTTCCEEEEEEECSS
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHH--HCCceEEEEecCcce
Confidence 6778888765 89999999999999999 999999999999864
No 453
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.02 E-value=1.5 Score=33.11 Aligned_cols=65 Identities=17% Similarity=0.105 Sum_probs=41.5
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc-----CCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV-----NIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~-----~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+....... ....+ ..+|.++++.+.+. .++..+..++..+.+. +.+ +.+|.|+.|.
T Consensus 51 ~~~~~~Dt~G~~~~~~~-~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl 121 (172)
T 2erx_A 51 CTLQITDTTGSHQFPAM-QRLSI--SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDE 121 (172)
T ss_dssp EEEEEEECCSCSSCHHH-HHHHH--HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGG
T ss_pred EEEEEEECCCchhhHHH-HHHhc--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEcccc
Confidence 78999999975432221 12222 35888888887654 5566666666666542 344 6789999984
No 454
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.00 E-value=0.2 Score=43.63 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=27.5
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
.++.|..|+||||++..+|..+. ..+.++.+++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNA 84 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECT
T ss_pred EEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcC
Confidence 56678999999999999999998 5555555555443
No 455
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.97 E-value=0.25 Score=39.36 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=19.1
Q ss_pred EEEecCCCchHHHHHHHHHHHHh
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la 73 (294)
.|++|.+|+||||+...|...+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 57789999999999988866554
No 456
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=88.90 E-value=0.36 Score=39.42 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+++|.++ |..|+||+|.|..||..+.
T Consensus 29 ~kiI~ll-GpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 29 AKVIFVL-GGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CEEEEEE-CCTTCCHHHHHHHHHHHHC
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHC
Confidence 4555554 7889999999999998876
No 457
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.85 E-value=0.34 Score=37.10 Aligned_cols=66 Identities=9% Similarity=-0.035 Sum_probs=37.6
Q ss_pred ccEEEEcCCCCCChH-----HHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDE-----HLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~-----~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.++|+|+..... .......+....+|.++++.+... ......++..+.+.+.+ +-+|.|+.|.
T Consensus 50 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~--~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 120 (165)
T 2wji_A 50 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGAN-LLLALNKMDL 120 (165)
T ss_dssp EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTC--HHHHHHHHHHHHHTTCC-EEEEEECHHH
T ss_pred cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCc--hhHhHHHHHHHHhcCCC-EEEEEEchHh
Confidence 568889998643210 000111111126898888887654 23334455556555665 5688999884
No 458
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.76 E-value=0.29 Score=41.78 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=25.8
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
....++.|..|+|||+++..+|..+. .+++.+++
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~-----~~~i~v~~ 69 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG-----INPIMMSA 69 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT-----CCCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEeH
Confidence 34555668999999999999998875 35666654
No 459
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=88.68 E-value=0.45 Score=36.98 Aligned_cols=20 Identities=45% Similarity=0.682 Sum_probs=16.0
Q ss_pred eEEEEEecCCCchHHHHHHH
Q psy11347 48 HKVLVLSGKGGVGKSTFTNL 67 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~ 67 (294)
..+..+.|.+|+||||++..
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 44556669999999999994
No 460
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=88.67 E-value=1.6 Score=40.98 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=25.2
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcC-------CCCcEEEE
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSN-------ESVDVGVL 84 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~-------~g~~Vlli 84 (294)
+.+. +....|+|||.++..++..+.+.. .+.+|+++
T Consensus 199 ~~~l-l~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil 241 (590)
T 3h1t_A 199 KRSL-ITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFL 241 (590)
T ss_dssp SEEE-EEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEE
T ss_pred CceE-EEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEE
Confidence 4443 346789999999999998886212 45777765
No 461
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=88.66 E-value=0.68 Score=42.13 Aligned_cols=52 Identities=25% Similarity=0.205 Sum_probs=41.5
Q ss_pred CceEEEEEec---CCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCCCChhhhcccccc
Q psy11347 46 VKHKVLVLSG---KGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE 102 (294)
Q Consensus 46 ~~~~i~v~s~---kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~~~l~~~lg~~~~ 102 (294)
.+|.|.|++. +-|.||||++..|+..|. +.|+++.+. ...|++--.||....
T Consensus 42 ~GklIlVTaItPTPaGEGKtTttiGL~~aL~--~lgk~~~~~---lRePSlGP~FGiKGG 96 (543)
T 3do6_A 42 DGKLILVTAVTPTPAGEGKTTTSIGLSMSLN--RIGKKSIVT---LREPSLGPTLGLKGG 96 (543)
T ss_dssp CCEEEEEEESSCCTTCCCHHHHHHHHHHHHH--HTTCCEEEE---ECCCCHHHHHHSCCS
T ss_pred CCeEEEEEecCCCCCCCCccchHHHHHHHHH--hcCCeeEEE---EecCCCCCcCCcccc
Confidence 4777777664 459999999999999999 899999776 456677777777644
No 462
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.61 E-value=0.2 Score=40.69 Aligned_cols=32 Identities=28% Similarity=0.233 Sum_probs=24.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEE
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVG 82 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~Vl 82 (294)
+.++++ -|.+|+||||+...|+.. . ....+|.
T Consensus 22 Ge~~~l-iG~nGsGKSTLl~~l~Gl-~--p~~G~I~ 53 (208)
T 3b85_A 22 NTIVFG-LGPAGSGKTYLAMAKAVQ-A--LQSKQVS 53 (208)
T ss_dssp CSEEEE-ECCTTSSTTHHHHHHHHH-H--HHTTSCS
T ss_pred CCEEEE-ECCCCCCHHHHHHHHhcC-C--CcCCeee
Confidence 445555 589999999999999998 6 4455553
No 463
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.58 E-value=0.34 Score=47.95 Aligned_cols=47 Identities=26% Similarity=0.310 Sum_probs=32.5
Q ss_pred HHhhhccCceEEEEEecCCCchHHHHHHHHHHHHhhcC-------CCCcEEEEecC
Q psy11347 39 VKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSN-------ESVDVGVLDLD 87 (294)
Q Consensus 39 i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la~~~-------~g~~VlliD~D 87 (294)
+...+....+.-.++.|..|+||||++..+|..+. . .+.+++.+|+.
T Consensus 182 l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~--~~~~p~~l~~~~~~~l~~~ 235 (854)
T 1qvr_A 182 VIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIV--KGDVPEGLKGKRIVSLQMG 235 (854)
T ss_dssp HHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHH--HTCSCTTSTTCEEEEECC-
T ss_pred HHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh--cCCCchhhcCCeEEEeehH
Confidence 33333333333345668899999999999999996 3 36788888764
No 464
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=88.53 E-value=0.38 Score=40.48 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=23.4
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
-.++.|..|+||||++..+|..+. .++..+++
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~~-----~~~~~v~~ 84 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATETN-----ATFIRVVG 84 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHTT-----CEEEEEEG
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEeh
Confidence 355668899999999999987765 34555544
No 465
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.42 E-value=2.7 Score=31.44 Aligned_cols=88 Identities=14% Similarity=0.146 Sum_probs=47.5
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc----CCCeeEEEeccccccCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV----NIPIIGVVENMATFVCPKCT 234 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~----~~~~~~vvvN~~~~~~~~~~ 234 (294)
+.+.++|+|+......+ ....+ ..+|.++++.+.+ ..++.....++..+... +.+ +.+|.|+.|..
T Consensus 49 ~~~~i~D~~g~~~~~~~-~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~----- 119 (166)
T 3q72_A 49 ASLMVYDIWEQDGGRWL-PGHCM--AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP-IILVGNKSDLV----- 119 (166)
T ss_dssp EEEEEEECC------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC-EEEEEECTTCC-----
T ss_pred EEEEEEECCCCccchhh-hhhhh--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccccc-----
Confidence 67899999964321111 11112 4688888887654 46777777777777543 344 56889999842
Q ss_pred CCCccCCCCchhHHHHHhhcCCcee
Q psy11347 235 KPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 235 ~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
....+. .+..+.+.+..+.+++
T Consensus 120 ~~~~~~---~~~~~~~~~~~~~~~~ 141 (166)
T 3q72_A 120 RSREVS---VDEGRACAVVFDCKFI 141 (166)
T ss_dssp SSCCSC---HHHHHHHHHHTTCEEE
T ss_pred cccccC---HHHHHHHHHHhCCcEE
Confidence 112222 3344566666666554
No 466
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=88.38 E-value=1.4 Score=34.28 Aligned_cols=87 Identities=13% Similarity=0.153 Sum_probs=52.7
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCc-hhhHHHHHHHHHHHHhc------CCCeeEEEeccccccCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQ-EVSLLDVRKEIDFCRKV------NIPIIGVVENMATFVCPK 232 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~-~~s~~~~~~~l~~l~~~------~~~~~~vvvN~~~~~~~~ 232 (294)
+.+.|+|+|+......+ ...+ ..+|.++++.+.+ ..++..+..++..+... +.+ +.+|.|+.|..
T Consensus 69 ~~l~i~Dt~G~~~~~~~--~~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~--- 140 (187)
T 3c5c_A 69 VHLRVMDTADLDTPRNC--ERYL--NWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKLDMA--- 140 (187)
T ss_dssp EEEEEEECCC---CCCT--HHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGGG---
T ss_pred EEEEEEECCCCCcchhH--HHHH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcchh---
Confidence 77889999964321111 1233 5789888888765 46777777777777543 444 66999999842
Q ss_pred CCCCCccCCCCchhHHHHHhhcCCcee
Q psy11347 233 CTKPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 233 ~~~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
....+ ..+...++.+..+++++
T Consensus 141 --~~~~v---~~~~~~~~~~~~~~~~~ 162 (187)
T 3c5c_A 141 --QYRQV---TKAEGVALAGRFGCLFF 162 (187)
T ss_dssp --GGCSS---CHHHHHHHHHHHTCEEE
T ss_pred --hcCcc---CHHHHHHHHHHcCCcEE
Confidence 11111 13445667777776555
No 467
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.34 E-value=0.47 Score=41.14 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=29.7
Q ss_pred CcChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 33 DPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 33 ~~~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+.....|+..+......-.++.|..|+||||++..+|..+.
T Consensus 43 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 43 DHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34566666666554212256779999999999999999986
No 468
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.33 E-value=0.38 Score=36.63 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.3
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
.-+.++.|.+|+||||+.-++...|-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 34677789999999999999998885
No 469
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.26 E-value=0.58 Score=39.19 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
...-.++.|..|+|||++|..+|..+.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 444566678999999999999998755
No 470
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=88.18 E-value=0.43 Score=48.17 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=35.5
Q ss_pred cChHHHHhhhcc-CceEEEEEecCCCchHHHHHHHHHHH--HhhcCCCCcEEEEecCCC
Q psy11347 34 PGIELVKSHLSN-VKHKVLVLSGKGGVGKSTFTNLLARV--LAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 34 ~~~~~i~~~~~~-~~~~i~v~s~kGGvGKTTia~~LA~~--la~~~~g~~VlliD~D~~ 89 (294)
.....|++.+.. ....+..+.|-||+||||+|..++.. .. ..-...+++++.+..
T Consensus 135 ~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~-~~Fd~gV~WVsVs~~ 192 (1221)
T 1vt4_I 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ-CKMDFKIFWLNLKNC 192 (1221)
T ss_dssp HHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHH-HHHSSCEEEEECCCS
T ss_pred HHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHH-HhCCCcEEEEEeCCC
Confidence 445566666554 22345556689999999999999853 22 123446888888643
No 471
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.17 E-value=0.31 Score=42.45 Aligned_cols=24 Identities=33% Similarity=0.650 Sum_probs=20.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la 73 (294)
..++.|..|+||||++..+|..+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Confidence 456679999999999999999883
No 472
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.04 E-value=0.36 Score=41.62 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+.+++ +.|.+|+||||+...|+..+.
T Consensus 126 Ge~va-IvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 126 KNCLA-FIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp CSEEE-EECSSSSSHHHHHHHHHHHHT
T ss_pred CCEEE-EECCCCCcHHHHHHHHhhhcC
Confidence 34455 458899999999999999883
No 473
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=88.00 E-value=0.43 Score=43.12 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=30.0
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
-.++.|..|+|||++...+...+. ..|.+|+++|..
T Consensus 55 h~~i~G~tGsGKs~~~~~li~~~~--~~g~~viv~Dpk 90 (437)
T 1e9r_A 55 HLLVNGATGTGKSVLLRELAYTGL--LRGDRMVIVDPN 90 (437)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHH--HTTCEEEEEEET
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEeCC
Confidence 445558889999999888888888 789999999864
No 474
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=87.86 E-value=2.5 Score=31.54 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=42.8
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhc---CCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKV---NIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~---~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+...... .....+ ..+|.++++.+.+. .++......+..+... ....+.+|.|+.|.
T Consensus 44 ~~~~i~Dt~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 113 (164)
T 1r8s_A 44 ISFTVWDVGGQDKIRP-LWRHYF--QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 113 (164)
T ss_dssp CEEEEEECCCCGGGHH-HHHHHT--TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EEEEEEEcCCChhhHH-HHHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCC
Confidence 7899999996533211 122223 68999999887654 5677777666666432 12346789999884
No 475
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.70 E-value=0.35 Score=39.81 Aligned_cols=24 Identities=42% Similarity=0.621 Sum_probs=20.2
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la 73 (294)
+.++.|-.|+||||++..|+..|.
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 445557799999999999999886
No 476
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=87.68 E-value=1.6 Score=39.37 Aligned_cols=64 Identities=19% Similarity=0.137 Sum_probs=43.5
Q ss_pred ccEEEEcCCCCCCh------HHHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSD------EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~------~~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
..+.|+|+|+.... ........+ ..+|.+|+|++. ........++..+.+.+.+ +.+|+|+.|.
T Consensus 83 ~~l~liDTpG~~d~~~l~~~~~~~~~~~l--~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~p-iIvV~NK~Dl 152 (423)
T 3qq5_A 83 GPVTLVDTPGLDDVGELGRLRVEKARRVF--YRADCGILVTDS--APTPYEDDVVNLFKEMEIP-FVVVVNKIDV 152 (423)
T ss_dssp EEEEEEECSSTTCCCTTCCCCHHHHHHHH--TSCSEEEEECSS--SCCHHHHHHHHHHHHTTCC-EEEECCCCTT
T ss_pred CeEEEEECcCCCcccchhHHHHHHHHHHH--hcCCEEEEEEeC--CChHHHHHHHHHHHhcCCC-EEEEEeCcCC
Confidence 37899999964321 111223333 579999999987 3334567778888888777 4589999984
No 477
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=87.61 E-value=0.38 Score=44.25 Aligned_cols=39 Identities=26% Similarity=0.220 Sum_probs=31.2
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
.+..+.|.+|+||||+...|+..+. ....+|.+-+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 4555669999999999999999998 77777877665543
No 478
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=87.58 E-value=0.32 Score=39.49 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.1
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la 73 (294)
-.++.|..|+||||+|..||..+.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 456779999999999999999887
No 479
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.43 E-value=0.6 Score=41.13 Aligned_cols=24 Identities=33% Similarity=0.617 Sum_probs=20.4
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la 73 (294)
..++.|..|+||||++..||..+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 355668899999999999999876
No 480
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=87.40 E-value=1.3 Score=34.41 Aligned_cols=65 Identities=12% Similarity=0.077 Sum_probs=42.3
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHh----cCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRK----VNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~----~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+.... .......+ ..+|.+|++.+.+. .++..+...+..+.. .+.+ +.+|.|+.|.
T Consensus 67 ~~~~l~Dt~G~~~~-~~~~~~~~--~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 136 (188)
T 1zd9_A 67 VTIKLWDIGGQPRF-RSMWERYC--RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDL 136 (188)
T ss_dssp EEEEEEEECCSHHH-HTTHHHHH--TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTS
T ss_pred EEEEEEECCCCHhH-HHHHHHHH--ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCC-EEEEEECCCC
Confidence 78999999963211 11112222 57999999988754 567777766666543 2344 6789999984
No 481
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=87.39 E-value=0.92 Score=36.34 Aligned_cols=68 Identities=18% Similarity=0.125 Sum_probs=40.8
Q ss_pred ccEEEEcCCCCCCh--------HHHHHH-HHhh-cCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSD--------EHLSLV-QYLK-GLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~--------~~~~~~-~~l~-~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+.... ...... ..+. ...+|.++++++.....-.....+++.+...+.+ +.+|+|++|.
T Consensus 79 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~Dl 156 (223)
T 4dhe_A 79 PVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKP-IHSLLTKCDK 156 (223)
T ss_dssp CSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCC-EEEEEECGGG
T ss_pred CcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEecccc
Confidence 78999999963221 001111 1111 1347878888877643223445566777776666 5689999984
No 482
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.19 E-value=0.29 Score=45.44 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=25.5
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEec
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~ 86 (294)
+..+.|..|+||||+...|+..+. .....|.+-|.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~ 296 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDT 296 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCc
Confidence 355668999999999999998887 54444444443
No 483
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.14 E-value=0.44 Score=41.91 Aligned_cols=47 Identities=15% Similarity=0.339 Sum_probs=30.9
Q ss_pred hHHHHhhhccC-ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy11347 36 IELVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD 85 (294)
Q Consensus 36 ~~~i~~~~~~~-~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD 85 (294)
++.|..-+.-. +.+++++ |.+|+||||+...|+..+. .....+.+++
T Consensus 59 ~~ald~ll~i~~Gq~~gIi-G~nGaGKTTLl~~I~g~~~--~~~g~i~~~G 106 (347)
T 2obl_A 59 VRAIDGLLTCGIGQRIGIF-AGSGVGKSTLLGMICNGAS--ADIIVLALIG 106 (347)
T ss_dssp CHHHHHHSCEETTCEEEEE-ECTTSSHHHHHHHHHHHSC--CSEEEEEEES
T ss_pred CEEEEeeeeecCCCEEEEE-CCCCCCHHHHHHHHhcCCC--CCEEEEEEec
Confidence 34444443332 5566666 7799999999999999987 4434444544
No 484
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.14 E-value=0.18 Score=42.36 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=27.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
..+..+-|.+|+||||+...|+..+. . ..+|.+-+.|
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~ 82 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKN 82 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEE
Confidence 33455558999999999999999887 5 5677664444
No 485
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=87.03 E-value=0.28 Score=41.96 Aligned_cols=39 Identities=31% Similarity=0.323 Sum_probs=26.9
Q ss_pred ChHHHHhhhccCceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 35 GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 35 ~~~~i~~~~~~~~~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
....|+..+......-.++.|..|+||||++..++..+.
T Consensus 33 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 33 IVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 344444444443211266778999999999999999986
No 486
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=86.99 E-value=0.66 Score=37.38 Aligned_cols=27 Identities=37% Similarity=0.427 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
++.|..++||.|+||+|+|..+...+.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g 36 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLG 36 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcC
Confidence 445666669999999999999887665
No 487
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=86.95 E-value=0.86 Score=38.26 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=35.8
Q ss_pred ceEEEEEe-cCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCCC
Q psy11347 47 KHKVLVLS-GKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICG 90 (294)
Q Consensus 47 ~~~i~v~s-~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~~ 90 (294)
||-|.|++ .-+|.||=.+|+.|+..|. .+|++|.++..||.-
T Consensus 23 ~KyIfVTGGVvS~lGKGi~aaSlg~lLk--~~G~~Vt~~K~DPYl 65 (295)
T 2vo1_A 23 MKYILVTGGVISGIGKGIIASSVGTILK--SCGLHVTSIKIDPYI 65 (295)
T ss_dssp CEEEEEEECSSSSSSHHHHHHHHHHHHH--HTTCCEEEEEEECSS
T ss_pred ceEEEEcCCcccccccHHHHHHHHHHHH--HCCCcceeeecccce
Confidence 55555554 4579999999999999999 999999999999864
No 488
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.93 E-value=0.47 Score=38.90 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=23.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCC
Q psy11347 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88 (294)
Q Consensus 50 i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~ 88 (294)
+.++.|..|+||||++..||..|. +.++|.|.
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg-------~~~~d~d~ 49 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFG-------FTYLDTGA 49 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC-------CEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-------CceecCCC
Confidence 444558899999999999988766 34677653
No 489
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=86.89 E-value=0.5 Score=37.32 Aligned_cols=66 Identities=17% Similarity=0.110 Sum_probs=40.8
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC--CCeeEEEeccccc
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN--IPIIGVVENMATF 228 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~vvvN~~~~ 228 (294)
+.+.|+|+|+....... ....+ ..+|.+|++.+.+. .++..+..++..+.... ...+.+|.|+.|.
T Consensus 82 ~~~~i~Dt~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl 150 (199)
T 3l0i_B 82 IKLQIWDTAGQERFRTI-TSSYY--RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 150 (199)
T ss_dssp EEEEEECCTTCTTCCCC-SCC----CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSC
T ss_pred EEEEEEECCCcHhHHHH-HHHHh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccC
Confidence 67999999963211000 01112 57899999987664 67777778888776553 2245688899984
No 490
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.88 E-value=0.43 Score=38.46 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=17.3
Q ss_pred EEEEEecCCCchHHHHHHHHHHH
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARV 71 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~ 71 (294)
...++.|..|+||||+|..|+..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 34556689999999998877643
No 491
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=86.80 E-value=0.5 Score=38.19 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=18.9
Q ss_pred EEecCCCchHHHHHHHHHHHHh
Q psy11347 52 VLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 52 v~s~kGGvGKTTia~~LA~~la 73 (294)
++-|..|+||+|.|..||..+.
T Consensus 4 il~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 4 VFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEECSTTSSHHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHHHC
Confidence 4448899999999999998877
No 492
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.72 E-value=0.43 Score=39.57 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=19.6
Q ss_pred EEEecCCCchHHHHHHHHHHHHh
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la 73 (294)
.++.|..|+||||++..+|..+.
T Consensus 48 vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 45668899999999999998775
No 493
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.71 E-value=0.55 Score=36.47 Aligned_cols=88 Identities=13% Similarity=0.010 Sum_probs=49.8
Q ss_pred ccEEEEcCCCCCChH-----HHHHHHHhhcCCCcEEEEecCCchhhHHHHHHHHHHHHhcCCCeeEEEeccccccCCCCC
Q psy11347 160 LEYLLIDTPPGTSDE-----HLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCT 234 (294)
Q Consensus 160 yd~IiiD~p~~~~~~-----~~~~~~~l~~~~ad~vliv~~~~~~s~~~~~~~l~~l~~~~~~~~~vvvN~~~~~~~~~~ 234 (294)
+.+.|+|+|+..... .......+....+|.++.+++.. +......++..+...+.+ +-+|.|+.|..
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~--~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~----- 125 (188)
T 2wjg_A 54 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDAT--ALERNLYLTLQLMEMGAN-LLLALNKMDLA----- 125 (188)
T ss_dssp EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGG--GHHHHHHHHHHHHTTTCC-EEEEEECHHHH-----
T ss_pred cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecch--hHHHHHHHHHHHHhcCCC-EEEEEEhhhcc-----
Confidence 678899999643210 00011111112478888888765 355566666777666666 45888998842
Q ss_pred CCCccCCCCchhHHHHHhhcCCcee
Q psy11347 235 KPSEIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 235 ~~~~i~~~~~~~~~~~~~~~g~~~l 259 (294)
....+. ...+++.+.++.+++
T Consensus 126 ~~~~~~----~~~~~~~~~~~~~~~ 146 (188)
T 2wjg_A 126 KSLGIE----IDVDKLEKILGVKVV 146 (188)
T ss_dssp HHTTCC----CCHHHHHHHHTSCEE
T ss_pred ccccch----HHHHHHHHHhCCCeE
Confidence 111111 235666666776655
No 494
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=86.67 E-value=0.39 Score=39.75 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=19.5
Q ss_pred EEEecCCCchHHHHHHHHHHHHh
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la 73 (294)
.++.|..|+||||++..++..+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45668999999999999998765
No 495
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=86.59 E-value=0.2 Score=47.35 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=30.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D~~ 89 (294)
+..+++ -|.+|+||||+...|+..+. ....+|.+-+.|..
T Consensus 369 G~~~~i-vG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~~ 408 (582)
T 3b60_A 369 GKTVAL-VGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLR 408 (582)
T ss_dssp TCEEEE-EECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETT
T ss_pred CCEEEE-ECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEcc
Confidence 444554 48899999999999999998 77778877555543
No 496
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=86.54 E-value=0.52 Score=37.86 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.9
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 48 HKVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 48 ~~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
.-+.++.|.+|+||||+.-++...|.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34777889999999999999999888
No 497
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.40 E-value=0.47 Score=39.26 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=24.7
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhcCCCCcEEEEecC
Q psy11347 51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87 (294)
Q Consensus 51 ~v~s~kGGvGKTTia~~LA~~la~~~~g~~VlliD~D 87 (294)
.++.|..|+|||+++..+|..+. . ++..+++.
T Consensus 42 vll~G~~GtGKT~la~~la~~~~--~---~~~~~~~~ 73 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAKAVATEAQ--V---PFLAMAGA 73 (262)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT--C---CEEEEETT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--C---CEEEechH
Confidence 45668899999999999998765 3 56666653
No 498
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=86.27 E-value=0.89 Score=34.76 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=52.1
Q ss_pred ccEEEEcCCCCCChHHHHHHHHhhcCCCcEEEEecCCch-hhHHHHHHHHHHHHhcC-CCeeEEEeccccccCCCCCCCC
Q psy11347 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQE-VSLLDVRKEIDFCRKVN-IPIIGVVENMATFVCPKCTKPS 237 (294)
Q Consensus 160 yd~IiiD~p~~~~~~~~~~~~~l~~~~ad~vliv~~~~~-~s~~~~~~~l~~l~~~~-~~~~~vvvN~~~~~~~~~~~~~ 237 (294)
+.+.|+|+|+.-... ......+ ..+|.++++.+.+. .+...+..++..+.... ...+.+|.|+.|.. ...
T Consensus 58 ~~~~i~Dt~G~~~~~-~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-----~~~ 129 (181)
T 3tw8_B 58 VKLQIWDTAGQERFR-TITSTYY--RGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP-----ERK 129 (181)
T ss_dssp EEEEEEEETTGGGCS-SCCGGGG--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG-----GGC
T ss_pred EEEEEEcCCCchhhh-hhHHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc-----hhc
Confidence 678999999632100 0011112 57898988887654 67777777777776543 23456889998842 111
Q ss_pred ccCCCCchhHHHHHhhcCCcee
Q psy11347 238 EIFPKDSGGAEKMCAELSVPFL 259 (294)
Q Consensus 238 ~i~~~~~~~~~~~~~~~g~~~l 259 (294)
.+ .......+.+..+.+++
T Consensus 130 ~~---~~~~~~~~~~~~~~~~~ 148 (181)
T 3tw8_B 130 VV---ETEDAYKFAGQMGIQLF 148 (181)
T ss_dssp CS---CHHHHHHHHHHHTCCEE
T ss_pred cc---CHHHHHHHHHHcCCeEE
Confidence 11 12345566666676655
No 499
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=86.22 E-value=0.62 Score=39.82 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=20.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHh
Q psy11347 49 KVLVLSGKGGVGKSTFTNLLARVLA 73 (294)
Q Consensus 49 ~i~v~s~kGGvGKTTia~~LA~~la 73 (294)
...++.|..|+||||++..+|..+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3455568899999999999998665
No 500
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=86.22 E-value=0.3 Score=44.02 Aligned_cols=26 Identities=35% Similarity=0.350 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHH
Q psy11347 47 KHKVLVLSGKGGVGKSTFTNLLARVL 72 (294)
Q Consensus 47 ~~~i~v~s~kGGvGKTTia~~LA~~l 72 (294)
...+.++.|-.|+||||++..|+..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45677778999999999998887544
Done!