RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11347
(294 letters)
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Length = 262
Score = 338 bits (869), Expect = e-118
Identities = 101/260 (38%), Positives = 145/260 (55%), Gaps = 10/260 (3%)
Query: 37 ELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRM 96
E +K L +K ++ V+SGKGGVGKST T LLA A+ + V G+LD D GPS+P +
Sbjct: 8 EEIKERLGKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKV--GILDADFLGPSIPIL 65
Query: 97 MGLLNEQVHQSASGWSPVFLEE-NLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVD 155
GL N ++ SA G PV ++ + VMS+ FLL + VIWRGP MIR+FL V
Sbjct: 66 FGLRNARIAVSAEGLEPVLTQKYGIKVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVA 125
Query: 156 WGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVN 215
WG L++LLID PPGT D L+++Q G +VV+TPQE++ + V K I+ + N
Sbjct: 126 WGE-LDHLLIDLPPGTGDAPLTVMQDA---KPTGVVVVSTPQELTAVIVEKAINMAEETN 181
Query: 216 IPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEG 275
++G+VENM+ FVCP C S IF G E + + ++ F S+PI+ + + D G
Sbjct: 182 TSVLGLVENMSYFVCPNCGHKSYIF--GEGKGESLAKKYNIGFFTSIPIEEELIKLADSG 239
Query: 276 T-SAIDTPSACVDAIQQIVQ 294
+ +
Sbjct: 240 RIEEYEKDWFESAPFLEHHH 259
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 117 bits (295), Expect = 8e-32
Identities = 44/276 (15%), Positives = 91/276 (32%), Gaps = 60/276 (21%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVH--- 105
K+ V +GKGGVGK+T L +++A + + +D D + + +GL E+ +
Sbjct: 2 KLAV-AGKGGVGKTTVAAGLIKIMASDYDKI--YAVDGDP-DSCLGQTLGLSIEEAYAIT 57
Query: 106 ---------QSASGWSPVFL----------------EENLSVMSIGFLLNSPDDAVIWRG 140
+ +G + + ++ + ++ +G
Sbjct: 58 PLIEMKDEIREKTGDGGLLILNPKVDGDLDKYGRYIDDKIFLIRMG----EIKKGGSQCY 113
Query: 141 PKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVS 200
++N+ + +S + E +++D G EHL+ D+ I V P S
Sbjct: 114 CRENSFLGSVVSALFLDKK-EAVVMDMGAGI--EHLTRGTAKAV--DM-MIAVIEPNLNS 167
Query: 201 LLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAE--LSVPF 258
+ + I + V N + EK+ +
Sbjct: 168 IKTGLNIEKLAGDLGIKKVRYVINKV----------------RNIKEEKLIKKHLPEDKI 211
Query: 259 LGSVPIDPLVTRHCDEGTSAIDTPSACVDAIQQIVQ 294
LG +P + L +G + + + I Q
Sbjct: 212 LGIIPYNELFIELSLKGEEIWQSTNPAFVNLHDIYQ 247
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 78.0 bits (192), Expect = 1e-16
Identities = 36/226 (15%), Positives = 67/226 (29%), Gaps = 35/226 (15%)
Query: 52 VLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ-------V 104
S GGVG ST A A + V L+++ CG +
Sbjct: 148 FTSPCGGVGTSTVAAACAIAHANMGKK--VFYLNIEQCG-TTDVFFQAEGNATMSDVIYS 204
Query: 105 HQSASGWSPVFLEENLSVMSIGFLL----NSPDDAVIWRGPKKNTMIRQFLSEVDWGNGL 160
+S + LE + G D + +T+I +
Sbjct: 205 LKSRKANLLLKLESCIKQSQEGVSYFSSTKVALDILEISYADIDTLIGNIQGMDN----Y 260
Query: 161 EYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKV-NIPII 219
+ +++D P E L L+ IVV ++S + + + I
Sbjct: 261 DEIIVDLPFSLEIEKLKLLS----KAWR-IIVVNDGSQLSNYKFMRAYESVVLLEQNDDI 315
Query: 220 GVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPID 265
++ NM + K + + + +S+ +G P
Sbjct: 316 NIIRNMNM-IYNKFSNKNSEMLSN----------ISIKTIGGAPRY 350
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell
division, cell cycle; 2.60A {Archaeoglobus fulgidus}
SCOP: c.37.1.10
Length = 263
Score = 76.1 bits (188), Expect = 2e-16
Identities = 52/265 (19%), Positives = 97/265 (36%), Gaps = 63/265 (23%)
Query: 52 VLSGKGGVGKSTFTNLLARVLAKSNESV-----DVGVLDLDICGPSMPRMMGLLNEQ--- 103
V SGKGG GK+T T L LA+ V D+ + +L++ ++G+
Sbjct: 7 VASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLEL-------ILGMEGLPVTL 59
Query: 104 ---VHQSASGWSPVFLEE-------NLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSE 153
+ A ++E + V+ G + + P+K + L++
Sbjct: 60 QNVLAGEAR------IDEAIYVGPGGVKVVPAG----VSLEGLRKANPEK---LEDVLTQ 106
Query: 154 VDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRK 213
+ + LL+D P G + + ++V P+ S+ D K +
Sbjct: 107 IM--ESTDILLLDAPAGLERSAVIAI-----AAAQELLLVVNPEISSITDGLKTKIVAER 159
Query: 214 VNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCD 273
+ ++GVV N T + ++ A L +G +P DP V R
Sbjct: 160 LGTKVLGVVVNRIT---------TL---GIEMAKNEIEAILEAKVIGLIPEDPEVRRAAA 207
Query: 274 EGTSAI----DTPSACVDAIQQIVQ 294
G + ++P+A AI ++
Sbjct: 208 YGKPVVLRSPNSPAA--RAIVELAN 230
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell
division inhibitor, MINC, MINE, cell hydrolase; HET:
ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Length = 260
Score = 73.4 bits (181), Expect = 2e-15
Identities = 48/270 (17%), Positives = 93/270 (34%), Gaps = 59/270 (21%)
Query: 52 VLSGKGGVGKSTFTNLLARVLAKSNESV-----DVGVLDLDICGPSMPRMMGLLNEQVHQ 106
V SGKGGVGK+T + +A LA+ + +G+ +LD+ +MG
Sbjct: 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDL-------IMGC------- 52
Query: 107 SASGWSPVFLEENLSVMSIGFLLN---SPDDAVIWRGPKKNTM----------------- 146
E V ++ + + A+I + + +
Sbjct: 53 -----------ERRVVYDFVNVIQGDATLNQALI-KDKRTENLYILPASQTRDKDALTRE 100
Query: 147 -IRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVR 205
+ + L ++ E+++ D+P G L + + AI+ T P+ S+ D
Sbjct: 101 GVAKVLDDLK-AMDFEFIVCDSPAGIETGALMALYFADE-----AIITTNPEVSSVRDSD 154
Query: 206 KEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPID 265
+ + + E + + P + D E + L + +G +P D
Sbjct: 155 RILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPED 214
Query: 266 PLVTRHCDEGTSAIDTP-SACVDAIQQIVQ 294
V R ++G I + A V+
Sbjct: 215 QSVLRASNQGEPVILDINADAGKAYADTVE 244
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: ATP;
2.20A {Chlorobium tepidum}
Length = 245
Score = 69.2 bits (170), Expect = 6e-14
Identities = 43/260 (16%), Positives = 83/260 (31%), Gaps = 41/260 (15%)
Query: 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGL------LNEQ 103
+S KGG G S A L++ + V +D+ + + + L +
Sbjct: 7 FGFVSAKGGDGGSCIAANFAFALSQEPDI-HVLAVDISLPFGDLDMYLSGNTHSQDLADI 65
Query: 104 VHQSASGWSPVFLEENLSVMSIGFLL----NSPDDAVIWRGPKKNTMIRQFLSEVDWGNG 159
+ S L+ + +S L + + V + + +I S D
Sbjct: 66 SNASDR-LDKSLLDTMVQHISPSLDLIPSPATFEKIVNIEPERVSDLIHIAASFYD---- 120
Query: 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPI- 218
Y+++D + ++++L +VTTP SL + + C++ PI
Sbjct: 121 --YIIVDFGASIDHVGVWVLEHLD-----ELCIVTTPSLQSLRRAGQLLKLCKEFEKPIS 173
Query: 219 -IGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHC-DEGT 276
I ++ N A S I + + + P +P D + G
Sbjct: 174 RIEIILNRA-------DTNSRITSDE------IEKVIGRPISKRIPQDEDAMQESLLSGQ 220
Query: 277 SAI--DTPSACVDAIQQIVQ 294
S + S I
Sbjct: 221 SVLKVAPKSQLSKTIVDWAL 240
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.3 bits (166), Expect = 6e-13
Identities = 53/314 (16%), Positives = 100/314 (31%), Gaps = 92/314 (29%)
Query: 36 IELVKSHLSNVK-HKVLVLSGKGGVGKSTFTNLLARVLAKSNESV----DVGV--LDLDI 88
++ L ++ K +++ G G GK+ + V + V D + L+L
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTW---VALDVC--LSYKVQCKMDFKIFWLNLKN 191
Query: 89 CG--PSMPRMMGLLNEQV----HQSASGWSPVFLEENLSVMSIGFLLNSP---------D 133
C ++ M+ L Q+ + S + L + + LL S
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 134 DAVIWRGPKKNTMIRQF------L------SEVDWGNGLEY---LLIDTPPG-TSDEHLS 177
+ + F L D+ + L T DE S
Sbjct: 252 N--VQN----AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 178 LV-QYL----KGLPDIGAIVVTTPQEVSLL-----DVRKEIDFCRKVNIPIIGVVENMAT 227
L+ +YL + LP ++ T P+ +S++ D D + VN + + T
Sbjct: 306 LLLKYLDCRPQDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVNC------DKLTT 357
Query: 228 FV--CPKCTKPSE---------IFPKDSGGAEKMCAELSVPFLGSVPIDP---------- 266
+ +P+E +FP + + LS+ + + D
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL---LSLIWFDVIKSDVMVVVNKLHKY 414
Query: 267 -LVTRHCDEGTSAI 279
LV + E T +I
Sbjct: 415 SLVEKQPKESTISI 428
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: ADP; 2.47A {Synechocystis SP}
Length = 209
Score = 49.7 bits (119), Expect = 2e-07
Identities = 36/177 (20%), Positives = 61/177 (34%), Gaps = 49/177 (27%)
Query: 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSAS 109
+ V S KGGVGK+T L+ LA + ++D D P +SA+
Sbjct: 3 ITVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGD---P-----------N--RSAT 43
Query: 110 GWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPP 169
GW + P V R K + ++IDT
Sbjct: 44 GWGK--------------RGSLPFKVVDERQAAKYA------------PKYQNIVIDTQA 77
Query: 170 GTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMA 226
DE L L D+ ++ +TP ++L + I+ +K+ ++ +
Sbjct: 78 RPEDEDLEA---LADGCDL-LVIPSTPDALALDALMLTIETLQKLGNNRFRILLTII 130
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA
segregation, unknown function; HET: ADP; 1.80A
{Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Length = 206
Score = 49.3 bits (118), Expect = 2e-07
Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 46/180 (25%)
Query: 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSAS 109
+ L+ KGG GK+T +A L++S + + V+D D P Q S +
Sbjct: 4 ISFLNPKGGSGKTTAVINIATALSRSGYN--IAVVDTD---P-----------Q--MSLT 45
Query: 110 GWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPP 169
WS G + D K IR+ L++ D + ++D
Sbjct: 46 NWS-----------KAG---KAAFDVFTAASEKDVYGIRKDLADYD------FAIVDGAG 85
Query: 170 GTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIP---IIGVVENMA 226
S + V + D+ I+ TP + + +
Sbjct: 86 SLSVITSAAVM----VSDL-VIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 48.5 bits (116), Expect = 9e-07
Identities = 33/219 (15%), Positives = 80/219 (36%), Gaps = 51/219 (23%)
Query: 33 DPGIELVKS-----HLSNV--KHKVLVLSGKG-GVGKSTFTNLLARVLAKSNESVDVGVL 84
D +E V++ H + + ++ +L+++G GK+ ++ LA V+A+S++ V +
Sbjct: 82 DSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKV---LF 138
Query: 85 -DLDICGPSMPRMMGL---------------LNEQVHQSASGWSPVFLEENLSVMSIGFL 128
D D+ + + LN+ + + V++ G +
Sbjct: 139 IDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFG--------KGGFDVITRGQV 190
Query: 129 LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPP--GTSDEHLSLVQYLKGLP 186
P+ + + + ++ D +++DTPP SD +
Sbjct: 191 --PPNPSELLMRDRMRQLLEWANDHYD------LVIVDTPPMLAVSD-----AAVVGRSV 237
Query: 187 DIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENM 225
+++V + +V + + + I G + N
Sbjct: 238 G-TSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNG 275
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding
domain, walker A motif, B protein kinase,
oligomerization; HET: ADP; 3.20A {Escherichia coli}
Length = 286
Score = 47.3 bits (113), Expect = 2e-06
Identities = 38/226 (16%), Positives = 77/226 (34%), Gaps = 65/226 (28%)
Query: 33 DPGIELVKS-----HLSNV--KHKVLVLSGKG-GVGKSTFTNLLARVLAKSNESVDVGVL 84
D IE ++S H + + ++ VL+++G +G + LA V++++N+ V +L
Sbjct: 70 DLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRV---LL 126
Query: 85 -DLDICGPSMPRMMGL---------------LNEQVHQSASGWSPVFLEENLSVMSIGF- 127
D D+ ++G + ++ ++ G
Sbjct: 127 IDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTS--------IAKFDLIPRGQV 178
Query: 128 ------LLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPP--GTSDEHLSLV 179
LL S + ++ D +LIDTPP +D
Sbjct: 179 PPNPSELLMS---------ERFAELVNWASKNYD------LVLIDTPPILAVTD-----A 218
Query: 180 QYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENM 225
+ ++V +L +V + + IP+ GV+ N
Sbjct: 219 AIVGRHVG-TTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNS 263
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase;
chimerical protein, P-loop protein, capsule
biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus
aureus} PDB: 2ved_A*
Length = 271
Score = 47.2 bits (113), Expect = 2e-06
Identities = 34/206 (16%), Positives = 68/206 (33%), Gaps = 60/206 (29%)
Query: 47 KHKVLVLSGKG-GVGKSTFTNLLARVLAKSNESVDVGVL-DLDICGPSMPRMMGL----- 99
+ +V++ + G GKST LA A++ ++ D D+ P+ + L
Sbjct: 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKT---LIVDGDMRKPTQHYIFNLPNNEG 137
Query: 100 ----------LNEQVHQSASGWSPVFLEENLSVMSIGF-------LLNSPDDAVIWRGPK 142
+ + + E+L V++ G L+ S
Sbjct: 138 LSSLLLNWSTYQDSIISTE--------IEDLDVLTSGPIPPNPSELITS---------RA 180
Query: 143 KNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLV---QYLKGLPDIGAIVVTTPQEV 199
+ L + +++IDTPP ++ V Q + V +
Sbjct: 181 FANLYDTLLMNYN------FVIIDTPP------VNTVTDAQLFSKFTG-NVVYVVNSENN 227
Query: 200 SLLDVRKEIDFCRKVNIPIIGVVENM 225
+ +V+K + ++GVV N
Sbjct: 228 NKDEVKKGKELIEATGAKLLGVVLNR 253
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 44.9 bits (106), Expect = 1e-05
Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 32/184 (17%)
Query: 26 SGAAKSVDPGIELVKSHLSNVKHKVLV-LSGKGGVGKSTFTNLLARVLAKSNESVDVGVL 84
S + +L+ L + + V ++G GVGKST L L + V VL
Sbjct: 56 STRPDHREQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHR--VAVL 113
Query: 85 DLDICGPSMP-----------RMMGLLNEQ---VHQSASGWSPVFLEENLSVMSIGFLLN 130
+D PS RM L + S + + + ++ L
Sbjct: 114 AVD---PSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRATR-ETVVLLEA 169
Query: 131 SPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLK-GLPDIG 189
+ D ++ + SEV N ++ ++ T T D+ +Q +K G+ ++
Sbjct: 170 AGFDVILIE------TVGVGQSEVAVANMVDTFVLLTLARTGDQ----LQGIKKGVLELA 219
Query: 190 AIVV 193
IVV
Sbjct: 220 DIVV 223
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 3e-05
Identities = 49/292 (16%), Positives = 91/292 (31%), Gaps = 100/292 (34%)
Query: 29 AKSVDPGIELVKSHLSNVKHKVLVLSGKGGVG---KSTFTNLLA---RVLAKSNESVDVG 82
A S P L SH +++H +LV + + + F +L A +E
Sbjct: 3 AYSTRP---LTLSH-GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP- 57
Query: 83 VLDLDICGPSMPRMMGLLNEQVHQSASG-WSPV-----------FLEENLSVMSIGFLLN 130
+L + + +G ++ V S G + V +LE N + ++ L
Sbjct: 58 -AEL------VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN-DIHALAAKLL 109
Query: 131 SPDDAVIWRGPKKNTMIRQF-------------------LSEVDW------------GNG 159
+D + K +I+ + V GN
Sbjct: 110 QENDTTL---VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 160 LEYL-----LIDTPPG-------TSDEHL-SLVQ--------YLKGLPDIGAIVVTTPQE 198
+Y L T S E L L++ + +GL +I + P
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-NILE-WLENP-- 222
Query: 199 VSLLDVRKEIDFCRK--VNIPIIGVVENMATF--VCPKC-TKPSEIFPKDSG 245
+ D+ ++ P+IGV++ +A + P E+ G
Sbjct: 223 ----SNTPDKDYLLSIPISCPLIGVIQ-LAHYVVTAKLLGFTPGELRSYLKG 269
Score = 38.9 bits (90), Expect = 0.002
Identities = 50/243 (20%), Positives = 79/243 (32%), Gaps = 79/243 (32%)
Query: 3 GTESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVGKS 62
G S G V+A + S + S +V+ + VL G
Sbjct: 269 GATGHSQGLVTA-------VAIA--ETDSWE-------SFFVSVRKAITVLFFIGVRCYE 312
Query: 63 TF--TNLLARVLAKSNESVDVGVLDLDICG-PSMPRMM---GLLNEQVHQSASGWSPVFL 116
+ T+L +L +S++ G PS P M+ L EQV Q + L
Sbjct: 313 AYPNTSLPPSILE---DSLENN------EGVPS-P-MLSISNLTQEQV-QDYVNKTNSHL 360
Query: 117 EENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLL--IDTPPGT--- 171
+ I L+N + V+ GP Q L GL L P G
Sbjct: 361 PAG-KQVEIS-LVNGAKNLVV-SGP------PQSLY------GLNLTLRKAKAPSGLDQS 405
Query: 172 ----SDEHLSLV-QYLKGLPDIGAIVVTTP---------QEVSLLDV-RKEIDFCRK-VN 215
S+ L ++ LP V +P ++ D+ + + F K +
Sbjct: 406 RIPFSERKLKFSNRF---LP------VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 216 IPI 218
IP+
Sbjct: 457 IPV 459
Score = 34.6 bits (79), Expect = 0.036
Identities = 38/257 (14%), Positives = 78/257 (30%), Gaps = 115/257 (44%)
Query: 97 MGLLNEQVHQSASGWSPV----------FLEENL--SVMSIGFLLNSPDDAVIWRGPKKN 144
MG+ ++++ S ++ S++ I ++N+P + I G +K
Sbjct: 1631 MGM---DLYKT----SKAAQDVWNRADNHFKDTYGFSILDI--VINNPVNLTIHFGGEKG 1681
Query: 145 TMIRQ------FLSEVDWGNGLEYLLIDTPPGTS-------DEHLSLVQYLKGLPDIGAI 191
IR+ F + VD E + + ++ LS Q+ + P A+
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ--P---AL 1736
Query: 192 VVTTPQEVSLL-DVRKEIDFCRKVNIPIIGVVENMATF-----------VCPKCTKPSEI 239
+ E + D++ + G++ ATF +++
Sbjct: 1737 TLM---EKAAFEDLKSK------------GLIPADATFAGHSLGEYAALAS-----LADV 1776
Query: 240 F--------------------PKDSGGAEK--MCAELSVPFLGSVPIDPLVTRHCDEGTS 277
P+D G M A I+P
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA-----------INP----------G 1815
Query: 278 AIDTPSACVDAIQQIVQ 294
+ S +A+Q +V+
Sbjct: 1816 RV-AASFSQEALQYVVE 1831
Score = 28.1 bits (62), Expect = 4.7
Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 15/49 (30%)
Query: 18 CPNQSICSSGAAKSVD-----------PGIELVK----SHLSNVKHKVL 51
NQ ++G +++D I++++ L V+ +
Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 42.8 bits (101), Expect = 6e-05
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 26 SGAAKSVDPGIELVKSHLSNVKH-KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVL 84
S A +L+ + L + ++G GVGKST + L +L + V VL
Sbjct: 32 SRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHK--VAVL 89
Query: 85 DLDICGPSMPRMMG 98
+D PS R G
Sbjct: 90 AVD---PSSTRTGG 100
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 42.9 bits (101), Expect = 7e-05
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 26 SGAAKSVDPGIELVKSHLSNVKHKVLV-LSGKGGVGKSTFTNLLARVLAKSNESVDVGVL 84
S + +L+ + + + + + ++G G GKSTF +L + V V+
Sbjct: 33 SRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLK--VAVI 90
Query: 85 DLDICGPSMPRMMG 98
+D PS P G
Sbjct: 91 AVD---PSSPVTGG 101
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 41.4 bits (97), Expect = 2e-04
Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 25/161 (15%)
Query: 41 SHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLL 100
+ K + + GKGGVGK+T + A +A+S + V D P+ + L
Sbjct: 7 FKFNKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTD-----PA-HSLSDSL 60
Query: 101 NEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAV--IWRGPKKNTMIRQFLSEVDWGN 158
++ G +P + ENL + I P+ A+ ++ +
Sbjct: 61 EREI-----GHTPTKITENLYAVEI-----DPEVAMEEYQAKLQEQ---AAMNPGMGLDM 107
Query: 159 GLEYL-LIDTPPGTSDEHLSLVQYLKGL--PDIGAIVVTTP 196
+ + + PG DE + Q+L+ + + ++ T
Sbjct: 108 LQDQMDMASMSPGI-DEAAAFDQFLRYMTTDEYDIVIFDTA 147
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; 3.01A {Schizosaccharomyces pombe}
Length = 329
Score = 40.9 bits (96), Expect = 2e-04
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 31 SVDPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESV 79
S DP +++ L K + + GKGGVGK+T + LA ++K SV
Sbjct: 2 SFDPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSV 50
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 41.0 bits (96), Expect = 3e-04
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 12/77 (15%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA 108
+L GK GV ++ A++LA + V + + P +P ++
Sbjct: 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLL-AGLAE---PVLPLLLEQ--------T 50
Query: 109 SGWSPVFLEENLSVMSI 125
P + NL V+
Sbjct: 51 LTPDPQQIAPNLEVVQF 67
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 40.2 bits (94), Expect = 5e-04
Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 31/156 (19%)
Query: 53 LSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMP-----------RMMGLLN 101
LSG G GKSTF ++L + + VL +D PS RM L
Sbjct: 79 LSGPPGAGKSTFIEYFGKMLTERGHK--LSVLAVD---PSSCTSGGSLLGDKTRMTELSR 133
Query: 102 EQ---VHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGN 158
+ + S + + + + +I + D ++ + + Q SE +
Sbjct: 134 DMNAYIRPSPTRGTLGGVTRTTN-EAILLCEGAGYDIILI----ETVGVGQ--SEFAVAD 186
Query: 159 GLEYLLIDTPPGTSDEHLSLVQYLK-GLPDIGAIVV 193
++ ++ PP DE +Q +K G+ ++ +V
Sbjct: 187 MVDMFVLLLPPAGGDE----LQGIKRGIIEMADLVA 218
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered,
protein-ADP complex, cell cycle, hydrolase; HET: ADP;
2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A*
1ion_A*
Length = 237
Score = 39.4 bits (93), Expect = 5e-04
Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 61/204 (29%)
Query: 49 KVLVL-SGKGGVGKSTFTNLLARVLAKSNESV-----DVGVLDLDICGPSMPRMMGLLNE 102
+++ + SGKGG GK+T T L+ L V D+ + +L + ++G+ +
Sbjct: 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSL-------VLGVDDP 55
Query: 103 QV--HQSASGWSPVFLE--------ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLS 152
V H +G + +E +N+ V+ + V+ P+K + + +
Sbjct: 56 DVTLHDVLAGEAN--VEDAIYMTQFDNVYVLPGAVDW----EHVLKADPRK---LPEVIK 106
Query: 153 EVDWGNGLEYLLIDTPPG----------TSDEHLSLVQYLKGLPDIGAIVVTTPQEVS-L 201
+ + +++LID P G + +E A++VT P E+S L
Sbjct: 107 SLK--DKFDFILIDCPAGLQLDAMSAMLSGEE---------------ALLVTNP-EISCL 148
Query: 202 LDVRKEIDFCRKVNIPIIGVVENM 225
D K +K + I+G V N
Sbjct: 149 TDTMKVGIVLKKAGLAILGFVLNR 172
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A
{Debaryomyces hansenii}
Length = 348
Score = 39.9 bits (93), Expect = 6e-04
Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 16/158 (10%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQ 106
K + + GKGGVGK+T ++ +A LA + + ++ D P+ + ++
Sbjct: 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD---PA-HNLSDAFCQKF-- 70
Query: 107 SASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLID 166
V NLS M I P+ A+ + + D + +
Sbjct: 71 -GKDARKVEGLPNLSCMEI-----DPEAAMSDL---QQQASQYNNDPNDPLKSMMSDMTG 121
Query: 167 TPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDV 204
+ PG DE LS ++ LK + + +
Sbjct: 122 SIPGI-DEALSFMEVLKHIKNQKVLEGEDNSNAISYKT 158
Score = 27.5 bits (61), Expect = 5.8
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 191 IVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENM 225
I V + +SL + + I N+ + +V N
Sbjct: 235 ICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQ 269
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 39.9 bits (93), Expect = 6e-04
Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 25/158 (15%)
Query: 43 LSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE 102
L + + + GKGGVGK+T + LA LAK SV + D P+ + ++
Sbjct: 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD-----PA-HNLSDAFSQ 64
Query: 103 QVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLE- 161
+ V +NL M I P+ ++ ++ + D G G
Sbjct: 65 KF---GKEARLVEGFDNLYAMEI-----DPNGSM-------QDLLAGQTGDGDAGMGGVG 109
Query: 162 -YLLIDTPPGTSDEHLSLVQYLKGL--PDIGAIVVTTP 196
+ DE +S + LK + IV T
Sbjct: 110 VMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTA 147
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase,
ATP binding site, hydro; HET: ADP; 2.15A {Escherichia
coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A*
1ii9_A*
Length = 589
Score = 39.9 bits (93), Expect = 7e-04
Identities = 29/165 (17%), Positives = 45/165 (27%), Gaps = 46/165 (27%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESV------------DVGVLDLDICGPSMPRM 96
L +GKGGVGK++ + A LA+ + V V I + +
Sbjct: 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQ--VFSQTI--GNTIQ- 63
Query: 97 MGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAV-----IWRGPKKNTMIRQFL 151
+ LS + I P A P K + +
Sbjct: 64 ----------------AIASVPGLSALEI-----DPQAAAQQYRARIVDPIKGVLPDDVV 102
Query: 152 SEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTP 196
S ++ L DE L+ L I+ T
Sbjct: 103 SSIN--EQLSGACTTEIAAF-DEFTGLLTDASLLTRFDHIIFDTA 144
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 39.6 bits (93), Expect = 8e-04
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 35 GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLL 68
G++ ++ L ++ + +G+ GVGKS+ N L
Sbjct: 205 GLKPLEEAL---TGRISIFAGQSGVGKSSLLNAL 235
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 39.1 bits (92), Expect = 9e-04
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 35 GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLL 68
GI+ + +L + + +L+G GVGKS+ + L
Sbjct: 155 GIDELVDYL---EGFICILAGPSGVGKSSILSRL 185
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 39.1 bits (92), Expect = 9e-04
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 35 GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLL 68
GIE +K +L K K+ ++G GVGKS+ N +
Sbjct: 159 GIEELKEYL---KGKISTMAGLSGVGKSSLLNAI 189
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 39.1 bits (92), Expect = 0.001
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 35 GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLL 68
+ + H + K V +G+ GVGKS+ N +
Sbjct: 163 SLADIIPHF---QDKTTVFAGQSGVGKSSLLNAI 193
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 37.2 bits (86), Expect = 0.005
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESV 79
K ++ GKGGVGK+T + LA+ V
Sbjct: 27 KYIMFGGKGGVGKTTMSAATGVYLAEKGLKV 57
Score = 26.8 bits (59), Expect = 8.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 191 IVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENM 225
+V P+E+S+L+ + + +K IPI V+ N
Sbjct: 241 RLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQ 275
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae}
PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A*
3idq_A 3a36_A 3a37_A*
Length = 354
Score = 37.2 bits (86), Expect = 0.005
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 39 VKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE 77
+ S +++ HK + + GKGGVGK+T + +A +A S
Sbjct: 9 LHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQP 47
Score = 26.8 bits (59), Expect = 9.7
Identities = 5/35 (14%), Positives = 15/35 (42%)
Query: 191 IVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENM 225
+ V + +SL + + I ++ + ++ N
Sbjct: 239 VCVCISEFLSLYETERLIQELISYDMDVNSIIVNQ 273
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter
vibrioides} PDB: 2xj9_A* 2xit_A
Length = 286
Score = 36.3 bits (84), Expect = 0.008
Identities = 28/130 (21%), Positives = 42/130 (32%), Gaps = 29/130 (22%)
Query: 56 KGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPR---MMGLLNEQVHQSASGWS 112
KGG GKST L L V V+DLD R ++
Sbjct: 13 KGGAGKSTIAVHLVTALLYGGAK--VAVIDLD------LRQRTSARFFEN--RRAWLDNK 62
Query: 113 PVFLEE----NLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTP 168
+ L E NLS + L P++ + + +++LIDTP
Sbjct: 63 KIELPEPLALNLSDNDVA-LAERPEEEQVAG-------FEAAFARAM--AECDFILIDTP 112
Query: 169 PGTSDEHLSL 178
D ++
Sbjct: 113 G--GDSAITR 120
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 231
Score = 35.9 bits (84), Expect = 0.008
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 13/47 (27%)
Query: 179 VQYLKGLPDIGAIVVTTPQEVSLLDVRKE---IDFCRKVNIPIIGVV 222
++Y+ GLPDI I+V D ++E + C + IP I ++
Sbjct: 151 IKYMTGLPDI-VIIV---------DQQEEYTALRECITLGIPTICLI 187
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 36.2 bits (84), Expect = 0.012
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86
+ +++ + G G+GK+TF +L + SV L
Sbjct: 293 EGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQIL 332
Score = 31.9 bits (73), Expect = 0.26
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88
+L + GK GVGK+T +LA + + + V ++
Sbjct: 26 TILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEV 65
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 33.9 bits (77), Expect = 0.032
Identities = 25/155 (16%), Positives = 48/155 (30%), Gaps = 29/155 (18%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ---VH 105
+L+LSG G GKST LA + L I + + ++Q +
Sbjct: 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIM 69
Query: 106 QSASGWSPVFLEENLSVMSIG-------------------FLLNSPDDAVIWR------- 139
Q A+ + + +E V+ G +L + I R
Sbjct: 70 QIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGD 129
Query: 140 GPKKNTMIRQFLSEVDWGNGLEYLLIDTPPGTSDE 174
++ S+ E+ ++ +D+
Sbjct: 130 SLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQ 164
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 34.2 bits (77), Expect = 0.034
Identities = 22/171 (12%), Positives = 48/171 (28%), Gaps = 36/171 (21%)
Query: 37 ELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRM 96
EL++ + +L G+ G GK++ + + + +D D P
Sbjct: 22 ELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN-----DTFKQQHPNF 76
Query: 97 MGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDW 156
L+ +P + + + Q +
Sbjct: 77 DELVKLYEKDVVKHVTP--------------------YSNRMTEAIISRLSDQGYN---- 112
Query: 157 GNGLEYLLIDTPPGTSDEHLSLVQYLKGL-PDIGAIVVTTPQEVSLLDVRK 206
L+I+ T+D + L+ + V+ P+ S L +
Sbjct: 113 ------LVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIE 157
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 33.5 bits (76), Expect = 0.040
Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 22/168 (13%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVD-------------VGVLDLDICGPSMP- 94
+ + L+G GVGK+T + + VL S VD +G + + G P
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 95 -RMMGLLNEQVHQSASGWSPVFLE--ENLSVMSIGFLLNSPDDA----VIWRGPKKNTMI 147
R+ + G V L E L++ + S VI K
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 148 RQFLSEVDWG-NGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVT 194
+ F+ V + +++ T P + L+LV+ ++ D+ VT
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVT 169
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 34.2 bits (78), Expect = 0.041
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNES 78
K + ++G G G +T T + L + E+
Sbjct: 44 KKHHVTINGPAGTGATTLTKFIIEALISTGET 75
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer
RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia
coli} PDB: 2ykr_B 3fih_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B
3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 3i1m_B
1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B 3i1q_B ...
Length = 218
Score = 33.6 bits (78), Expect = 0.044
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 13/44 (29%)
Query: 182 LKGLPDIGAIVVTTPQEVSLLDVRKE---IDFCRKVNIPIIGVV 222
+ GLPD A+ V +D E I + IP+ +V
Sbjct: 146 MGGLPD--ALFV--------IDADHEHIAIKEANNLGIPVFAIV 179
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 34.2 bits (79), Expect = 0.046
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV 83
K +V+ + G G+GK+TF +LA V + V+ +
Sbjct: 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL 417
Score = 30.0 bits (68), Expect = 0.93
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 35 GIELVKSHLSNV--KHKVLVLSGKGGVGKSTFTNLLARVLAKSN 76
G+ + + V+ + G G GK+T +LA L +
Sbjct: 102 GVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL 145
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E*
1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B
1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B*
1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Length = 256
Score = 33.7 bits (78), Expect = 0.047
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 13/44 (29%)
Query: 182 LKGLPDIGAIVVTTPQEVSLLDVRKE---IDFCRKVNIPIIGVV 222
LK LPD AI V +D KE + RK+ IP+I +
Sbjct: 155 LKRLPD--AIFV--------VDPTKEAIAVREARKLFIPVIALA 188
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 33.2 bits (76), Expect = 0.056
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 37 ELVKSHLSNVKHKVLV-LSGKGGVGKSTFTNLLARVLAKSNESVDV 81
+++ + LV LSG G GKST +N LA L+ +V
Sbjct: 10 GVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEV 55
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 33.7 bits (76), Expect = 0.057
Identities = 27/171 (15%), Positives = 49/171 (28%), Gaps = 36/171 (21%)
Query: 37 ELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRM 96
L + S+ + ++L G+ G GK+T + + ++ ++D D P
Sbjct: 21 SLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDSFRSQHPHY 75
Query: 97 MGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDW 156
+ L E S A + +
Sbjct: 76 LELQQEYGKDSVEYTKD--------------------FAGKMVESLVTKLSSLGYN---- 111
Query: 157 GNGLEYLLIDTPPGTSDEHLSLVQYLKGLP-DIGAIVVTTPQEVSLLDVRK 206
LLI+ T D Q LK ++ ++ T E+S L
Sbjct: 112 ------LLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLI 156
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 33.3 bits (76), Expect = 0.061
Identities = 19/40 (47%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89
+++L+G GVGKSTF+ LA++L+K+N +DV VL D+
Sbjct: 6 LIILTGLPGVGKSTFSKNLAKILSKNN--IDVIVLGSDLI 43
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 32.7 bits (74), Expect = 0.075
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDV 81
+K+KV+V++G GVG +T + L L K + +
Sbjct: 1 MKNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKM 36
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 32.7 bits (74), Expect = 0.082
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVL 72
+ +++ G G GK+T+ N +
Sbjct: 19 QPFTVLIEGNIGSGKTTYLNHFEKYK 44
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 33.4 bits (77), Expect = 0.089
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV 83
K +V+ + G G+GK+TF +LA V + ++ +
Sbjct: 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL 347
Score = 29.6 bits (67), Expect = 1.2
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 35 GIELVKSHLSNV--KHKVLVLSGKGGVGKSTFTNLLARVL 72
G+ + V + V+ + G G GKST +LA L
Sbjct: 32 GVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQL 71
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 32.7 bits (74), Expect = 0.10
Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 19/124 (15%)
Query: 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSAS 109
++V G G GK+T T R L + V ++LD +P + +
Sbjct: 16 IVVFVGTAGSGKTTLTGEFGRYLEDNY---KVAYVNLDTGVKELPYEPSIDVREF----- 67
Query: 110 GWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEV-DWGNGLEYLLIDTP 168
V +EE +M G+ P+ A++ + ++L+++ +Y+LIDTP
Sbjct: 68 ----VTVEE---IMREGY---GPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTP 117
Query: 169 PGTS 172
Sbjct: 118 GQME 121
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 32.4 bits (73), Expect = 0.12
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDV 81
K+ +++G GVGKST + +L + +
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKI 34
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA
bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB:
3ez6_A* 3ez7_A
Length = 398
Score = 32.8 bits (75), Expect = 0.12
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 56 KGGVGKSTFTNLLARVLAKSNESVDVG--VL--DLD 87
KGGV K+ T LA + + +L DLD
Sbjct: 117 KGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLD 152
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta
lactamase, mitochondria; 2.60A {Homo sapiens}
Length = 289
Score = 32.5 bits (74), Expect = 0.13
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 157 GNGLEYLLIDTPPGTSDEHLS-LVQYLKGLP-DIGAIVVT 194
G G +LIDT E++S L Q L I IVVT
Sbjct: 38 GTGPRRILIDTGEPAIPEYISCLKQALTEFNTAIQEIVVT 77
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 32.8 bits (75), Expect = 0.15
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESV 79
H+++VL+G G GKST T +A + V
Sbjct: 202 AGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEV 235
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 31.9 bits (72), Expect = 0.15
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMG 98
++ ++G GVGK+ + L L S V + + G ++ ++
Sbjct: 7 IIWINGPFGVGKTHTAHTLHERLPGS------FVFEPEEMGQALRKLTP 49
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 31.7 bits (73), Expect = 0.17
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 44 SNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV 83
N K ++VLSG GVGK T + R+ + S +
Sbjct: 2 DNEKGLLIVLSGPSGVGKGT---VRKRIFEDPSTSYKYSI 38
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 32.3 bits (74), Expect = 0.17
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI 88
+VL L G G+GKST +LA + D +I
Sbjct: 104 QVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEI 143
Score = 31.5 bits (72), Expect = 0.32
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESV 79
++LV+ G+ G GK+T LLA L
Sbjct: 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEGQD 409
>3end_A Light-independent protochlorophyllide reductase iron-sulfur
ATP-binding protein; BCHL, electron donor, DPOR, Fe
protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter
sphaeroides 2} PDB: 3fwy_A*
Length = 307
Score = 32.1 bits (73), Expect = 0.18
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 55 GKGGVGKSTFT-NLLARVLAKSNESV 79
GKGG+GKST + NL A + + V
Sbjct: 48 GKGGIGKSTTSSNLSA-AFSILGKRV 72
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 31.7 bits (71), Expect = 0.20
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVL 72
+ K + + G GKSTF N+L ++
Sbjct: 23 RIKKISIEGNIAAGKSTFVNILKQLC 48
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 31.5 bits (71), Expect = 0.20
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 43 LSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESV 79
L VL+ SGK GK T L L +V
Sbjct: 6 LGGAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAV 42
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein;
2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Length = 403
Score = 32.0 bits (73), Expect = 0.21
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 56 KGGVGKSTFTNLLARVLAKSNESVDVG----VLDLD 87
KGGV K+ T LA L + + V+DLD
Sbjct: 120 KGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLD 155
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 31.3 bits (70), Expect = 0.22
Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 3/112 (2%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQ 106
++++L+G GKS L VL + + V L + G+ +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61
Query: 107 SASGWSPVFLEENLSVMSIGFLLNSPD---DAVIWRGPKKNTMIRQFLSEVD 155
+ G LE + + D V G R F+ ++D
Sbjct: 62 VSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLD 113
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 31.6 bits (72), Expect = 0.23
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESV 79
K K L L G GVGK+ +A LAK N S
Sbjct: 53 KMKGLYLHGSFGVGKTYLLAAIANELAKRNVSS 85
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur,
metal-binding, molybdenum, oxidoreductase; HET: HCA CFN
CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii}
SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E*
1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A
1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A*
1rw4_A
Length = 289
Score = 31.5 bits (72), Expect = 0.25
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 55 GKGGVGKSTFT-NLLARVLAKSNESV 79
GKGG+GKST T NL+A LA+ + V
Sbjct: 9 GKGGIGKSTTTQNLVA-ALAEMGKKV 33
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 31.9 bits (71), Expect = 0.29
Identities = 36/217 (16%), Positives = 69/217 (31%), Gaps = 34/217 (15%)
Query: 36 IELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLL--ARVLAKSNE---SVDVGVLDLDICG 90
I + +L ++LVL G GKSTF N L +L +V + G
Sbjct: 58 ITIASKNLQQGVFRLLVL-GDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRY----G 112
Query: 91 PSMPRMMGLLNEQV-----HQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNT 145
P + + + Q+ + E + D + P
Sbjct: 113 PEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYP---- 168
Query: 146 MIRQFLSEVDWGNGLEYLLIDTPP-GTSDEHLSLVQYLKGLPDIGAI--VVTTPQEVSLL 202
L + ++D+P ++ L L + + AI V+ Q +L
Sbjct: 169 --LTLLQK-------GIEIVDSPGLNDTEARNELS--LGYVNNCHAILFVMRASQPCTLG 217
Query: 203 DVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEI 239
+ R ++ + + + +V N V P ++
Sbjct: 218 ERRYLENYIKGRGLTVFFLV-NAWDQVRESLIDPDDV 253
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 31.2 bits (70), Expect = 0.31
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87
KH ++ ++G G G ST + ++ + E V ++ D
Sbjct: 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRR--EGVKAVSIEGD 42
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 31.1 bits (70), Expect = 0.32
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDIC 89
K+ +++G GVGKST LA L S ++ DI
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQLDNS------AYIEGDII 37
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 30.7 bits (69), Expect = 0.34
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQ 106
+++++G GK+T + LA L + +L D M +G + + +
Sbjct: 4 TPALIIVTGHPATGKTTLSQALATGL-------RLPLLSKDAFKEVMFDGLGWSDREWSR 56
Query: 107 SAS 109
Sbjct: 57 RVG 59
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 30.9 bits (69), Expect = 0.35
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVL 72
+ L + G VGKSTF LL +
Sbjct: 3 RRLSIEGNIAVGKSTFVKLLTKTY 26
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 31.1 bits (69), Expect = 0.37
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 36 IELVKSHLSNVKHK------VLVLSGKGGVGKSTFTNLLARVLAKSN-ESVDVGVLDLD 87
IE + ++ + SG G GKS + + L + +G +D
Sbjct: 13 IEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASID 71
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 31.1 bits (70), Expect = 0.40
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 35 GIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVD 80
+ + ++ L L G+ G GKS + ++ L+KS++ +
Sbjct: 139 RVIKKLDEMCDLDSFFLFLHGRAGSGKSV---IASQALSKSDQLIG 181
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 31.3 bits (70), Expect = 0.40
Identities = 30/241 (12%), Positives = 75/241 (31%), Gaps = 27/241 (11%)
Query: 4 TESESAGKVSACQGCPNQSICSSGAAKSVDPGIELVKSHLSNVKH-------------KV 50
T + A + C ++ ++ N+ +V
Sbjct: 82 TFQNWKFPIYAVEETELLWKCPDLTTNTITVKPNHTMKYIYNLHFMLEKIRMSNFEGPRV 141
Query: 51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD-----------ICGPSMPRMMGL 99
+++ G GK++ + L K N + ++LD I + ++
Sbjct: 142 VIV-GGSQTGKTSLSRTLCSYALKFN-AYQPLYINLDPQQPIFTVPGCISATPISDILDA 199
Query: 100 LNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNG 159
QS + + + + V + G + + + + + +D
Sbjct: 200 QLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVR 259
Query: 160 LEYLLIDTPP-GTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPI 218
++DTP DE+L+ + ++ ++ ++V + L + K+ N I
Sbjct: 260 RSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNI 319
Query: 219 I 219
Sbjct: 320 F 320
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 31.0 bits (70), Expect = 0.41
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 42 HLSNVKHKVLVLSGKGGVGKSTFTNLLARVLA-KSNESV 79
+ + K L L G G+GKS +A L+ K S
Sbjct: 146 QYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVST 184
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 30.5 bits (70), Expect = 0.44
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV 83
+ +V+SG G GKST LL ++ A+ +S V
Sbjct: 2 RPIVISGPSGTGKST---LLKKLFAEYPDSFGFSV 33
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 30.5 bits (70), Expect = 0.45
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV 83
+ +VLSG G GKST LL ++ + + V
Sbjct: 3 GPRPVVLSGPSGAGKST---LLKKLFQEHSSIFGFSV 36
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 30.1 bits (69), Expect = 0.51
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLL 68
K LVL G GVG+ N L
Sbjct: 4 MRKTLVLLGAHGVGRRHIKNTL 25
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 31.0 bits (70), Expect = 0.52
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 36 IELVKSHLSNV--KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVD 80
+ ++ L + + + + G G GKS LA + + ++
Sbjct: 133 VHAIQQKLWKLNGEPGWVTIYGMAGCGKSV----LAAEAVRDHSLLE 175
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding
protein, ABC trans binding protein; 1.80A {Treponema
pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Length = 313
Score = 30.4 bits (69), Expect = 0.57
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 184 GLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPII 219
G G V+T E S D+++ F + +P I
Sbjct: 215 GFEVKGLQGVSTASEASAHDMQELAAFIAQRKLPAI 250
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding
protein; 2.60A {Streptococcus suis}
Length = 282
Score = 30.4 bits (69), Expect = 0.65
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 184 GLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPII 219
V+T EV+ D+ + ++ NI I
Sbjct: 181 DFTLYAPQGVSTDSEVANSDMIETVNLIIDHNIKAI 216
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 30.4 bits (68), Expect = 0.65
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 36 IELVKSHLSNVKHKVL--VLSGKGGVGKSTFTNLLARVLAKSNESVDVGV 83
+ L + VL ++G+ G GKS+F N L + + + GV
Sbjct: 55 NSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV 104
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 29.6 bits (66), Expect = 0.70
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 44 SNVKHKVLVLSGKGGVGKSTFTNLLARVL 72
+N H + VL G G GKS + +A L
Sbjct: 4 TNHDHHIYVLMGVSGSGKSAVASEVAHQL 32
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 29.6 bits (67), Expect = 0.82
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 38 LVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARV 71
++ S N ++V+++ G+ GVGKST N+ A V
Sbjct: 28 VISSESGNTYYRVVLI-GEQGVGKSTLANIFAGV 60
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.6 bits (66), Expect = 0.86
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 10/55 (18%)
Query: 222 VENMA-TFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEG 275
N+ CP+C + + +CA G V D LV D
Sbjct: 15 GPNLNIVLTCPECKVYPPKIVERFSEGDVVCAL-----CGLVLSDKLV----DTR 60
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET:
DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11
PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Length = 296
Score = 29.9 bits (68), Expect = 0.86
Identities = 29/186 (15%), Positives = 52/186 (27%), Gaps = 59/186 (31%)
Query: 58 GVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMP------RMMGLL-NEQVHQSASG 110
G+GKSTF A VG+ L+ ++GL ++ QS S
Sbjct: 45 GMGKSTFVRQQALQWGT-AMGKKVGLAMLE-----ESVEETAEDLIGLHNRVRLRQSDSL 98
Query: 111 WSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPPG 170
+ L + + L D+
Sbjct: 99 KREIIENGKFD-QWFDELFGND----------------------------TFHLYDSFAE 129
Query: 171 TS-DEHLSLVQYLKGLPDIGAIVV------TTPQEVSLLDVRKEID--------FCRKVN 215
D L+ + Y++ I++ + S D RK ID F +
Sbjct: 130 AETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGES--DERKMIDNLMTKLKGFAKSTG 187
Query: 216 IPIIGV 221
+ ++ +
Sbjct: 188 VVLVVI 193
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport
systems, photosynthesis, cyanobacteria, disulfide bond,
metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Length = 321
Score = 30.0 bits (68), Expect = 0.89
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 184 GLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPII 219
G+ +I + Q+ + V+ I+ + N+P I
Sbjct: 222 GMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTI 257
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 29.7 bits (67), Expect = 0.93
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 34 PGIELVKSHLSNVKHKVLV--LSGKGGVGKSTFTNLLARVL---AKSNESVDVGVLDLD 87
G++L +L + + +SG GKST + +L V +L D
Sbjct: 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQD 67
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 29.8 bits (67), Expect = 0.97
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 39 VKSHLSNVKHKVLV--LSGKGGVGKSTFTNLLARVLAKSNESVD---VGVLDLD 87
+++H + + +SG GKS+ + ++L ++ V +L D
Sbjct: 11 LQNHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQD 64
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 29.5 bits (67), Expect = 0.97
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAK 74
K LVL G GVG+S + +L++
Sbjct: 18 GRKTLVLIGASGVGRSH---IKNALLSQ 42
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium
pasteurianum} SCOP: c.37.1.10
Length = 269
Score = 29.6 bits (67), Expect = 0.97
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFT-NLLA 69
+ + + GKGG+GKST T NL +
Sbjct: 2 RQVAIYGKGGIGKSTTTQNLTS 23
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 29.2 bits (66), Expect = 1.0
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARV 71
++V+++ G+ GVGKST N+ A V
Sbjct: 6 YYRVVLI-GEQGVGKSTLANIFAGV 29
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein,
metal binding, cell membrane, copper transport, iron;
1.87A {Streptococcus pyogenes serotype M1} PDB: 1psz_A
3ztt_A
Length = 294
Score = 29.6 bits (67), Expect = 1.1
Identities = 5/36 (13%), Positives = 14/36 (38%)
Query: 184 GLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPII 219
G+P + T +E + + I+ + + +
Sbjct: 201 GVPSAYIWEINTEEEGTPDQISSLIEKLKVIKPSAL 236
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035,
plasmid, DNA binding protein; HET: AGS EPE; 1.83A
{Streptococcus pyogenes}
Length = 298
Score = 29.5 bits (67), Expect = 1.2
Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 22/128 (17%)
Query: 56 KGGVGKSTFT-NL---LA----RVL-----AKSNESVDVGVLDLDICGPSMPRMMGLLNE 102
KGGVGKS + +VL ++ + D+ + P + GL N
Sbjct: 45 KGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAK-TFKVELPRVNFYEGLKNG 103
Query: 103 QVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAV-IWRGPKKNTMIRQFLSEVDWGNGLE 161
+ S V L +NL ++ F L W ++ ++ L+ + + +
Sbjct: 104 NLASSI-----VHLTDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK--SDYD 156
Query: 162 YLLIDTPP 169
++IDT P
Sbjct: 157 LIIIDTVP 164
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A
{Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Length = 208
Score = 29.2 bits (66), Expect = 1.2
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 196 PQEVSLLDVRKE---IDFCRKVNIPIIGVV 222
P+ V + D + + V IP++ +
Sbjct: 116 PEVVFVNDPAIDKQAVSEATAVGIPVVALC 145
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A
{Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A*
1p73_A* 1p75_A*
Length = 334
Score = 29.7 bits (66), Expect = 1.2
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 41 SHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE 77
SH+ + + L G G+GKST ++A + +
Sbjct: 2 SHMVTIVR--IYLDGVYGIGKSTTGRVMASAASGGSP 36
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 29.0 bits (66), Expect = 1.2
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV 83
+ ++VLSG GVGK T + V S D +
Sbjct: 7 RGLLIVLSGPSGVGKGT---VREAVFKDPETSFDYSI 40
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 29.3 bits (65), Expect = 1.3
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 41 SHLSNVKHKVLVLSGKGGVGKSTFTNLLARVL 72
S ++ + +V+ G G GK+T + +A
Sbjct: 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 29.2 bits (66), Expect = 1.3
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 47 KHKVLV-LSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD 85
++++ + G GK+T N L++ L + SV V +D
Sbjct: 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ehrlich chaffeensis; 2.15A
{Ehrlichia chaffeensis}
Length = 223
Score = 29.1 bits (66), Expect = 1.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 58 GVGKSTFTNLLARVLAKSNESVDV 81
G GK+T ++LLA L++ +V
Sbjct: 31 GSGKTTQSHLLAEYLSEIYGVNNV 54
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 29.2 bits (65), Expect = 1.4
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 58 GVGKSTFTNLLARVL 72
G GKST + +++ L
Sbjct: 10 GAGKSTISAEISKKL 24
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; 3.30A {Corynebacterium
diphtheriae}
Length = 361
Score = 29.4 bits (66), Expect = 1.5
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 18/40 (45%)
Query: 56 KGGVGKSTFT-NL---LA----RVLAKSNESVDVGVLDLD 87
KGGVGK+T + N+ A RVL +D D
Sbjct: 10 KGGVGKTTLSTNVAHYFALQGKRVL----------YVDCD 39
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 29.1 bits (65), Expect = 1.5
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 51 LVLSGKGGVGKSTFTN-LLARVLAKSNES 78
+++ GKGGVGKS+ N ++ + +
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGERVVSISPF 70
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 29.2 bits (65), Expect = 1.5
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 44 SNVKHKVLVLSGKGGVGKSTFTN-LLARVLAKSNES 78
+VL GK G GKS N +L R + S +
Sbjct: 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTA 60
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH,
niaid, borellia burgdorferi, plasmid partition protein,
iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Length = 267
Score = 29.1 bits (66), Expect = 1.5
Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 3/32 (9%)
Query: 56 KGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87
KGGVGKST +LA +L+K+N+ V ++D+D
Sbjct: 36 KGGVGKSTSAIILATLLSKNNK---VLLIDMD 64
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 29.5 bits (66), Expect = 1.6
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLAR 70
+ +L G G+GK+T +L+A+
Sbjct: 76 VFRAAMLYGPPGIGKTTAAHLVAQ 99
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 29.3 bits (65), Expect = 1.6
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 27 GAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLA-RVLAKSNESVDVGVLD 85
K D ++L+ + + + ++L G G GKST L + K + +
Sbjct: 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNV 62
Query: 86 LDICGPSMPRMMGLLNEQVHQ 106
+++ P + L + +
Sbjct: 63 IEVNDRLKPMV--NLVDSLKT 81
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 28.8 bits (64), Expect = 1.7
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVL 72
++L+G GVGK+T LA
Sbjct: 10 LLPNILLTGTPGVGKTTLGKELASKS 35
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 28.9 bits (64), Expect = 1.8
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLA 73
V L GG GKS LA +A
Sbjct: 31 TVGALVSPGGAGKSMLALQLAAQIA 55
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 28.2 bits (64), Expect = 2.0
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 48 HKVLVLSGKGGVGKSTFT 65
+KVL+L G GVGKS
Sbjct: 3 YKVLLL-GAPGVGKSALA 19
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 28.5 bits (64), Expect = 2.0
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVL 72
+++L G KST L++ L
Sbjct: 2 TLIILEGPDCCFKSTVAAKLSKEL 25
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation,
ADP, nucleotide binding, CARD, apoptosis; HET: ADP;
2.21A {Homo sapiens}
Length = 591
Score = 29.0 bits (65), Expect = 2.0
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 36 IELVKSHLSNVKHKVLVLS--GKGGVGKSTFTNLL 68
+ ++ LS +K + ++ G G GKS
Sbjct: 133 VNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEA 167
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 28.2 bits (64), Expect = 2.1
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 47 KHKVLVLSGKGGVGKSTFT 65
++K++VL G GGVGKS T
Sbjct: 3 EYKLVVL-GSGGVGKSALT 20
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas
aeruginosa} PDB: 3nip_A
Length = 326
Score = 28.7 bits (65), Expect = 2.1
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 7/37 (18%)
Query: 167 TP-PG--TSDEHLSLVQYLKGLPDIGAIVVTTPQEVS 200
TP G TS + LV+ L+GL +GA VV EVS
Sbjct: 254 TPEIGGMTSLQAQQLVRGLRGLDLVGADVV----EVS 286
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD
and GEM like GTP protein 1, structural genomics; HET:
GDP; 2.50A {Homo sapiens}
Length = 175
Score = 28.3 bits (64), Expect = 2.2
Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 44 SNVKHKVLVLSGKGGVGKSTFT 65
S ++V++L G GVGK++
Sbjct: 1 SMALYRVVLL-GDPGVGKTSLA 21
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase,
antibioti; 1.75A {Streptomyces clavuligerus} SCOP:
c.42.1.1 PDB: 1gq7_A
Length = 313
Score = 28.7 bits (65), Expect = 2.3
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 167 TP-PG--TSDEHLSLVQYLKGLPDIGAIVVTTPQEVS 200
TP PG S E L+L++ + L +G V+ EVS
Sbjct: 249 TPAPGGLLSREVLALLRCVGDLKPVGFDVM----EVS 281
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate
biosynthesis pathway, isomera; 1.69A {Mytilus edulis}
SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Length = 295
Score = 28.7 bits (65), Expect = 2.3
Identities = 6/38 (15%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 183 KGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIG 220
G+ D + +V ++V + + ++PI+
Sbjct: 54 LGVRDSN---EASWTQV--VEVLEFM--SDASDVPILL 84
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 28.3 bits (63), Expect = 2.3
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 46 VKHKVLVLSGKGGVGKSTF-TNLLARVLAKSNESV 79
+ ++L+G G GK+TF + + + E
Sbjct: 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPG 62
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism,
structural genomics, structural genomics of pathogenic
protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium
vivax}
Length = 204
Score = 28.3 bits (64), Expect = 2.5
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV 83
LV+ G GVGK T L+ +VL++ +
Sbjct: 13 PPLVVCGPSGVGKGT---LIKKVLSEFPSRFRFSI 44
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A*
3rap_R*
Length = 167
Score = 27.8 bits (63), Expect = 2.5
Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 47 KHKVLVLSGKGGVGKSTFT 65
++KV+VL G GGVGKS T
Sbjct: 3 EYKVVVL-GSGGVGKSALT 20
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP
mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A
{Variovorax SP} PDB: 2dua_A* 2hrw_A
Length = 290
Score = 28.4 bits (64), Expect = 2.5
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 183 KGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIG 220
+PD + + L++ + I V+IP+I
Sbjct: 50 YAVPDAN---ILSMSTH--LEMMRAI--ASTVSIPLIA 80
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 28.3 bits (64), Expect = 2.7
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 27 GAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLL 68
G++ + S LV+ G GVGK T L
Sbjct: 2 GSSHHHHHHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKL 43
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 27.9 bits (63), Expect = 2.9
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 47 KHKVLVLSGKGGVGKSTFT 65
++V V G GGVGKS+
Sbjct: 3 DYRVAVF-GAGGVGKSSLV 20
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome
segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A*
2bek_A*
Length = 257
Score = 28.3 bits (64), Expect = 2.9
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 56 KGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87
KGGVGK+T LA LA+ + V ++DLD
Sbjct: 15 KGGVGKTTTAINLAAYLARLGKR--VLLVDLD 44
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling
protein; HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 27.9 bits (63), Expect = 2.9
Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 48 HKVLVLSGKGGVGKSTFT 65
KV+++ G+ GVGKST
Sbjct: 3 FKVMLV-GESGVGKSTLA 19
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 28.0 bits (63), Expect = 2.9
Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 48 HKVLVLSGKGGVGKSTFT 65
KV+++ G+ GVGKST
Sbjct: 24 FKVMLV-GESGVGKSTLA 40
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus}
PDB: 3h0k_A
Length = 179
Score = 27.9 bits (62), Expect = 3.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
KV++++G G GKS F LL
Sbjct: 2 KVILITGMPGSGKSEFAKLLKE 23
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics,
structural genomics consortium, SGC; HET: GDP; 1.90A
{Homo sapiens} SCOP: c.37.1.8
Length = 196
Score = 28.0 bits (63), Expect = 3.1
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 47 KHKVLVLSGKGGVGKSTFT 65
+ K+ + G+ GVGKS
Sbjct: 28 EVKLAIF-GRAGVGKSALV 45
>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A
{Escherichia coli O157}
Length = 968
Score = 28.5 bits (62), Expect = 3.1
Identities = 10/51 (19%), Positives = 20/51 (39%)
Query: 144 NTMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVT 194
N ++ FL + L L+ P T++ + G D+ ++ T
Sbjct: 876 NILLVDFLQKPTPEKQLNIELVSAPKDTNENVFKASKQTIGFSDVTPVITT 926
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 27.9 bits (63), Expect = 3.2
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 47 KHKVLVLSGKGGVGKSTFT 65
HKV+++ G GGVGKS T
Sbjct: 18 LHKVIMV-GSGGVGKSALT 35
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 28.3 bits (63), Expect = 3.2
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 51 LVLSGKGGVGKSTFTN-LLARVLAKSNES 78
+++ GKGGVGKS+ N L+ + + +
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGEQVVRVSPF 67
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 28.3 bits (64), Expect = 3.2
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 51 LVLSGKGGVGKSTFTNLLAR 70
LV G+ G GKST NL R
Sbjct: 374 LV--GRSGSGKSTIANLFTR 391
>4edh_A DTMP kinase, thymidylate kinase; structural genomics,
PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas
aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 3uwk_A* 3uwo_A*
3uxm_A*
Length = 213
Score = 27.9 bits (63), Expect = 3.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 58 GVGKSTFTNLLARVLAKSNESV 79
G GKST + LA L + V
Sbjct: 16 GAGKSTNRDYLAERLRERGIEV 37
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A
{Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 27.9 bits (63), Expect = 3.3
Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 48 HKVLVLSGKGGVGKSTFT 65
+K++V+ G GGVGKS T
Sbjct: 22 YKLVVV-GAGGVGKSALT 38
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 28.0 bits (63), Expect = 3.3
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 48 HKVLVLSGKGGVGKSTFT 65
HKV+++ G GGVGKS T
Sbjct: 15 HKVIMV-GSGGVGKSALT 31
>4dz4_A Agmatinase; hydrolase; 1.70A {Burkholderia thailandensis}
Length = 324
Score = 28.3 bits (64), Expect = 3.3
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 7/37 (18%)
Query: 167 TP-PG--TSDEHLSLVQYLKGLPDIGAIVVTTPQEVS 200
TP G +S + L++V+ L G+ IGA VV EV+
Sbjct: 260 TPVAGGLSSAQALAIVRGLGGVNLIGADVV----EVA 292
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 28.3 bits (64), Expect = 3.4
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 51 LVLSGKGGVGKSTFTNLLAR 70
LV G+ G GKST +L+ R
Sbjct: 374 LV--GRSGSGKSTIASLITR 391
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 27.6 bits (62), Expect = 3.4
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 41 SHLSNVKHKVLVLSGKGGVGKSTFTN 66
S S + ++ VL G GKS+ +
Sbjct: 1 SMRSIPELRLGVL-GDARSGKSSLIH 25
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 27.5 bits (62), Expect = 3.4
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 47 KHKVLVLSGKGGVGKSTFT 65
K+ +L G VGKS+ T
Sbjct: 6 SRKIAIL-GYRSVGKSSLT 23
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
1w2h_A*
Length = 214
Score = 27.7 bits (62), Expect = 3.4
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 58 GVGKSTFTNLLARVLAKSNESV 79
G GK T L+ + SV
Sbjct: 10 GAGKRTLVEKLSGAFRAAGRSV 31
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Length = 608
Score = 28.1 bits (63), Expect = 3.5
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNES 78
+ ++ V+SG G GK+T L L + +
Sbjct: 162 LTRRISVISGGPGTGKTTTVAKLLAALIQMADG 194
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 28.3 bits (64), Expect = 3.5
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 58 GVGKSTFTNLLAR 70
G GKST NL+ R
Sbjct: 377 GGGKSTLINLIPR 389
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 27.8 bits (63), Expect = 3.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
+V+ + G+ G GKST T L+ R
Sbjct: 36 EVIGIVGRSGSGKSTLTKLIQR 57
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 27.7 bits (61), Expect = 3.6
Identities = 16/103 (15%), Positives = 25/103 (24%), Gaps = 8/103 (7%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMP------RMMGLLNE 102
V + G GK+T + V P+ P R
Sbjct: 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAV 64
Query: 103 QVHQSASGWSPVFLEENLSVMS--IGFLLNSPDDAVIWRGPKK 143
G + L L + + D V+ G K+
Sbjct: 65 ATAVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQ 107
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A
{Pseudomonas aeruginosa}
Length = 319
Score = 28.1 bits (63), Expect = 3.7
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 167 TP-PG--TSDEHLSLVQYLKGLPDIGAIVVTTPQEVS 200
TP G T+ + + +++ +GL IG +V EVS
Sbjct: 257 TPEIGGLTTIQAMEIIRGCQGLDLIGCDLV----EVS 289
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP;
1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A*
2wwi_A*
Length = 212
Score = 27.6 bits (62), Expect = 3.7
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 58 GVGKSTFTNLLARVLAKSNESV 79
GKST + LL L +N V
Sbjct: 20 RSGKSTQSKLLVEYLKNNNVEV 41
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 27.6 bits (62), Expect = 3.7
Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 48 HKVLVLSGKGGVGKSTFT 65
++V+V G GGVGKS+
Sbjct: 9 YRVVVF-GAGGVGKSSLV 25
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 27.6 bits (62), Expect = 3.8
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 47 KHKVLVLSGKGGVGKSTFT 65
KV++L G VGK++
Sbjct: 24 YRKVVIL-GYRCVGKTSLA 41
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 27.5 bits (62), Expect = 3.8
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAK 74
+V+VLSG VGKST ++ + +
Sbjct: 21 RVVVLSGPSAVGKST---VVRCLRER 43
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics, NPPSFA; HET: ADP TYD; 2.10A
{Thermotoga maritima} PDB: 3hjn_A*
Length = 197
Score = 27.5 bits (62), Expect = 3.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 58 GVGKSTFTNLLARVLAKSNESV 79
G GKST LLA+ L K + V
Sbjct: 10 GSGKSTQIQLLAQYLEKRGKKV 31
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
MTBI, transferase; HET: ATM; 1.85A {Staphylococcus
aureus subsp} PDB: 4dwj_A* 4f4i_A
Length = 229
Score = 27.6 bits (62), Expect = 4.0
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 58 GVGKSTFTNLLARVLAKSNESV 79
G GK+T N + L K + +
Sbjct: 36 GSGKTTVINEVYHRLVKDYDVI 57
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 27.7 bits (61), Expect = 4.2
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 40 KSHLSNVKHKVLVLSGKGGVGKSTFTN-LLARVLAKSNES 78
K ++ ++L GK G GKS N +L + +S
Sbjct: 14 KGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLG 53
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 28.0 bits (62), Expect = 4.2
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 52 VLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87
+ K G GKS +L V ++D +
Sbjct: 39 TILAKPGAGKSFTAKMLLLREYMQG--SRVIIIDPE 72
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A
{Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Length = 205
Score = 27.6 bits (62), Expect = 4.2
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 58 GVGKSTFTNLLARVLAKSNESV 79
G GK+T N + L K + +
Sbjct: 12 GSGKTTVINEVYHRLVKDYDVI 33
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding
protein, fluor membrane, lipoprotein, palmitate,
prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB:
2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A*
1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R
1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 27.5 bits (62), Expect = 4.3
Identities = 10/19 (52%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 47 KHKVLVLSGKGGVGKSTFT 65
++K++V+ G GGVGKS T
Sbjct: 3 EYKLVVV-GAGGVGKSALT 20
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 27.9 bits (61), Expect = 4.3
Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 1/102 (0%)
Query: 37 ELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRM 96
E++ L K +L G G GK+ L+ R L S+ V V + +
Sbjct: 33 EVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETP 92
Query: 97 MGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIW 138
+ + + ++ P V S +
Sbjct: 93 YRVASA-IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYI 133
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 28.0 bits (61), Expect = 4.5
Identities = 6/45 (13%), Positives = 17/45 (37%)
Query: 37 ELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDV 81
+ L + ++K+ ++ K N + L S+ ++
Sbjct: 34 LPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKEL 78
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, A binding, structural
genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Length = 195
Score = 27.5 bits (62), Expect = 4.7
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 58 GVGKSTFTNLLARVLAKSNESV 79
G GK+T L L + V
Sbjct: 10 GSGKTTQAKKLYEYLKQKGYFV 31
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 27.1 bits (61), Expect = 4.7
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 48 HKVLVLSGKGGVGKSTFT 65
HK++V+ G GGVGKS T
Sbjct: 10 HKLVVV-GGGGVGKSALT 26
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP,
transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP:
c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A*
1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A*
1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
1e9f_A*
Length = 215
Score = 27.6 bits (62), Expect = 4.8
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 58 GVGKSTFTNLLARVLAKSNESVDV 81
GKST + L L + ++
Sbjct: 19 RAGKSTQSRKLVEALCAAGHRAEL 42
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase,
shikimat ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 27.4 bits (61), Expect = 4.8
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 8 SAGKVSACQGCPNQSICSSG--AAKSVDPGIELVKSHLSNV----KHKVLVLSGKGGVGK 61
S ++ + + ++ +G D +++K V + + L G G GK
Sbjct: 2 SHMRLRSVSDKNSSALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGK 61
Query: 62 STFTNLLARVL 72
+T ++AR L
Sbjct: 62 TTVGKIMARSL 72
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 27.1 bits (61), Expect = 5.2
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 47 KHKVLVLSGKGGVGKSTFTN 66
+ KV ++ G GKS +
Sbjct: 20 ELKVGIV-GNLSSGKSALVH 38
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 27.1 bits (61), Expect = 5.4
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 48 HKVLVLSGKGGVGKSTFT 65
HKV+++ G GGVGKS T
Sbjct: 5 HKVIMV-GSGGVGKSALT 21
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 27.6 bits (61), Expect = 5.4
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 35 GIELVKSHLSNVKHKVLVLS-GKGGVGKSTFTNLLARVLAKSNESVDVG 82
G+ V ++ + V G VGKSTF N + +
Sbjct: 148 GMAKVMEAINRYREGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTS 196
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP;
1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB:
1fl9_A
Length = 158
Score = 26.8 bits (60), Expect = 5.5
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 50 VLVLSGKGGVGKSTFTNLLARVL 72
++ L+G G GK+T T + + +
Sbjct: 35 MVYLNGDLGAGKTTLTRGMLQGI 57
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 27.7 bits (61), Expect = 5.7
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 37 ELVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVL 72
+ +K + N+ K + + G GK+T L +
Sbjct: 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 27.3 bits (60), Expect = 5.7
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 37 ELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNES 78
++ K + + G G GK+ + L K
Sbjct: 34 SILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG 75
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 27.4 bits (60), Expect = 6.0
Identities = 5/47 (10%), Positives = 16/47 (34%)
Query: 37 ELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV 83
++ + N + G G GK+ + + + + + +
Sbjct: 34 IAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYK 80
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 27.3 bits (61), Expect = 6.1
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 51 LVLSGKGGVGKSTF 64
LVL G GG GK+TF
Sbjct: 18 LVLVGDGGTGKTTF 31
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling
protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A*
3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 26.7 bits (60), Expect = 6.1
Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 48 HKVLVLSGKGGVGKSTFT 65
+K++V+ G GGVGKS T
Sbjct: 19 YKLVVV-GDGGVGKSALT 35
>1d4m_2 Protein (coxsackievirus A9); picornavirus structure, RGD,
uncoating, virus-receptor interaction, WIN compound,
virus/viral protein; HET: MYR W71; 2.90A {Human
coxsackievirus A9} PDB: 2x5i_B* 3iyp_C* 1mqt_B* 1oop_B*
1h8t_B* 1upn_B 1m11_2 1cov_2* 1jew_2 1ev1_2* 2c8i_B
Length = 261
Score = 27.1 bits (60), Expect = 6.3
Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 251 CAELSVPFLGSVPIDPLVTRHC 272
A + +P++ SVP+D + RH
Sbjct: 197 SATIVMPYINSVPMDN-MFRHY 217
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 27.5 bits (60), Expect = 6.4
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDV 81
+ + L G G+GK+T A + + +
Sbjct: 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILL 45
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A*
3mrs_A 3n2e_A*
Length = 168
Score = 26.7 bits (60), Expect = 6.5
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 42 HLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87
H + + LVL G G GKS+ LA+ L ++ + VLD D
Sbjct: 1 HHHHHHMQHLVLIGFMGSGKSS----LAQELGL---ALKLEVLDTD 39
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 26.8 bits (60), Expect = 6.5
Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 47 KHKVLVLSGKGGVGKSTFT 65
++K++V+ G GVGKS T
Sbjct: 4 EYKLVVV-GADGVGKSALT 21
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity
clamp, clamp loader, AAA+ ATPase, transferase; HET:
DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20
PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Length = 373
Score = 27.2 bits (61), Expect = 6.6
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 4/23 (17%)
Query: 53 LSGKGGVGKSTFTNLLARVLAKS 75
SG GVGK++ +AR+LAK
Sbjct: 43 FSGTRGVGKTS----IARLLAKG 61
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 27.0 bits (59), Expect = 6.8
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVL 72
+V+ G G GKS+ +A
Sbjct: 19 GSIVVMGVSGSGKSSVGEAIAEAC 42
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and
permease protein; asymmetric dimer, tetramer,
P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus
lactis} SCOP: c.37.1.12
Length = 243
Score = 27.1 bits (61), Expect = 6.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
++ +G G GKST +LL R
Sbjct: 29 SIIAFAGPSGGGKSTIFSLLER 50
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 26.6 bits (58), Expect = 7.0
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 51 LVLSGKGGVGKSTFTNLLARVL 72
++++G G GK++ ++A L
Sbjct: 13 ILITGTPGTGKTSMAEMIAAEL 34
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 26.8 bits (60), Expect = 7.0
Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 49 KVLVLSGKGGVGKSTFT 65
+ +L G+ G GKS T
Sbjct: 23 NLAIL-GRRGAGKSALT 38
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A
{Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB:
1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 27.0 bits (60), Expect = 7.1
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 38 LVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVL 72
LV S+ + H L++ G+G L+R L
Sbjct: 14 LVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 26.9 bits (60), Expect = 7.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 51 LVLSGKGGVGKSTF 64
+ L G GGVGK+T+
Sbjct: 14 ICLIGDGGVGKTTY 27
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding,
ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE
PG4; 1.60A {Sulfolobus tokodaii}
Length = 213
Score = 26.9 bits (60), Expect = 7.1
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 58 GVGKSTFTNLLARVLAKSNESV 79
G GKS+ LL + +
Sbjct: 14 GSGKSSQATLLKDWIELKRDVY 35
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 26.9 bits (59), Expect = 7.2
Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 39 VKSHLSNVKHKVLVLSGKGGVGKSTFTNLL 68
+ K ++L++ G GKS+ ++
Sbjct: 12 ENLYFQGSKPRILLM-GLRRSGKSSIQKVV 40
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 26.7 bits (59), Expect = 7.3
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 40 KSHLSNVKHKVLV--LSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87
S L K + +SG GK+T L + L + V+ D
Sbjct: 11 SSGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP------NCSVISQD 54
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND
ligase, magnesium, nucleotide-binding; 1.85A
{Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A*
3fpa_A*
Length = 251
Score = 27.0 bits (60), Expect = 7.5
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 58 GVGKSTFTNLLARVLAKSNESVDV 81
GVGK+ LA ++ V V
Sbjct: 37 GVGKTVVCAALASAARQAGIDVAV 60
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 27.2 bits (60), Expect = 7.5
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 46 VKHKVLVLSGKGGVGKSTFTN-LLARVLAKSNESV 79
+ ++SG G GK+ F+ L + + +E
Sbjct: 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPG 71
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein,
acetylation, cytoplasm, phosphorylation, polymorphism;
2.15A {Homo sapiens}
Length = 253
Score = 26.9 bits (59), Expect = 7.6
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 196 PQEVSLLDVRKE---IDFCRKVNIPIIGVVE 223
P+ + + D R + + VN+P I +
Sbjct: 152 PRLLVVTDPRADHQPLTEASYVNLPTIALCN 182
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 27.1 bits (59), Expect = 7.7
Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 50 VLVLSGKGGVGKSTFTNLL 68
++V+ G+ G+GKST N L
Sbjct: 21 LMVV-GESGLGKSTLINSL 38
>3vbh_B EV71, genome polyprotein, capsid protein VP2; hand-foot-and-mouth
disease, enterovirus uncoating, P factor,
adaptor-sensor; HET: SPH; 2.30A {Human enterovirus 71}
PDB: 3vbf_B* 3vbs_B* 4aed_B* 3vbo_B 3vbr_B 3vbu_B 4agy_B
4agx_B
Length = 245
Score = 26.7 bits (59), Expect = 8.1
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 251 CAELSVPFLGSVPIDPLVTRHC 272
CA + VP++ ++P D HC
Sbjct: 181 CATIIVPYINALPFDS-ALNHC 201
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 26.8 bits (59), Expect = 8.1
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 196 PQEVSLLDVRKE---IDFCRKVNIPIIGVV 222
P+ + + D R + I VNIP+I +
Sbjct: 115 PRVLIVTDPRSDFQAIKEASYVNIPVIALC 144
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 26.6 bits (59), Expect = 8.1
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLAR 70
+ K++++ G G GK T LL +
Sbjct: 2 RMKLMIV-GNTGSGK---TTLLQQ 21
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 26.5 bits (58), Expect = 8.1
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 51 LVLSGKGGVGKSTFTNLLARVLAKS 75
++++G+ GVGK+T + L K
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKR 27
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND
biology, protein structure initiative, midwest center
for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter
pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A*
3qy0_A* 2qmo_A
Length = 242
Score = 26.7 bits (59), Expect = 8.6
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 47 KHKVLVLSGKG-GVGKSTFTNLLARVLAKSNESVDV 81
+ +L +S GK+T LLA+ +
Sbjct: 20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTIL 55
>1pov_0 Poliovirus native empty capsid (type 1); picornavirus, icosahedral
virus; HET: MYR SPH; 2.80A {Human poliovirus 1} SCOP:
b.121.4.1
Length = 340
Score = 26.8 bits (59), Expect = 8.8
Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 251 CAELSVPFLGSVPIDPLVTRHC 272
CA L +P++ S+ ID + +H
Sbjct: 273 CATLVLPYVNSLSIDS-MVKHN 293
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 26.3 bits (59), Expect = 9.2
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 44 SNVKHK--VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV 83
SN +K + ++S G GK++ L R L K+ + + +
Sbjct: 1 SNAMNKANLFIISAPSGAGKTS----LVRALVKALAEIKISI 38
>1aym_2 HRV16, human rhinovirus 16 coat protein; RNA, site-directed
mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A
{Human rhinovirus SP} PDB: 1ayn_2* 1ncr_B* 1nd2_B*
1nd3_B* 1qju_2* 1qjx_2* 1qjy_2* 1c8m_2* 1d3e_2 1r1a_2*
2hwd_2* 2hwe_2* 2hwf_2* 1fpn_2* 1v9u_2* 3dpr_B* 3tn9_2
Length = 261
Score = 26.8 bits (59), Expect = 9.5
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 251 CAELSVPFLGSVPIDPLVTRHC 272
A L VP++ +VP+D + RH
Sbjct: 197 SATLIVPYVNAVPMDS-MVRHN 217
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase
domains, sensor 1, sensor 2, transferase; HET: DNA;
2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Length = 250
Score = 26.4 bits (59), Expect = 9.6
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
Query: 52 VLSGKGGVGKSTFTNLLARVLAKS 75
+ SG GVGK++ +AR+LAK
Sbjct: 49 LFSGTRGVGKTS----IARLLAKG 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.404
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,402,294
Number of extensions: 267506
Number of successful extensions: 1186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1157
Number of HSP's successfully gapped: 227
Length of query: 294
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 201
Effective length of database: 4,105,140
Effective search space: 825133140
Effective search space used: 825133140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.2 bits)