RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11347
(294 letters)
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 113 bits (282), Expect = 2e-30
Identities = 33/263 (12%), Positives = 81/263 (30%), Gaps = 34/263 (12%)
Query: 33 DPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD----- 87
P + + ++ +H +++L GKGGVGK+T +A LA V + D
Sbjct: 5 IPSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFD--VHLTTSDPAAHL 62
Query: 88 --ICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNT 145
S+ + + ++ V + + G ++ + ++
Sbjct: 63 SMTLNGSLNNLQVSRIDPHEETERYRQHVLETKGKELDEAG--KRLLEEDLRSPCTEEIA 120
Query: 146 MIRQFLSEVDWGNGLEYLLIDTPPGTS----------------------DEHLSLVQYLK 183
+ + F + ++++DT P + + L+
Sbjct: 121 VFQAFSRVIREAGK-RFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFTTPMMLLQ 179
Query: 184 GLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTKPSEIFPKD 243
++VT P+ +L+ + I G + N + + + + +
Sbjct: 180 DPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQ 239
Query: 244 SGGAEKMCAELSVPFLGSVPIDP 266
+ + VP+
Sbjct: 240 ELPQIESVKRQHASRVALVPVLA 262
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 91.6 bits (226), Expect = 4e-22
Identities = 33/273 (12%), Positives = 85/273 (31%), Gaps = 57/273 (20%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD-------ICGPSMPRMMGLLN 101
L +GKGGVGK++ + A LA+ + V ++ D + ++ + +
Sbjct: 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKR--VLLVSTDPASNVGQVFSQTIGNTIQAIA 66
Query: 102 EQVHQSASGWSPVFLEE--------NLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLS- 152
SA P + + + +++S ++ + + +F
Sbjct: 67 SVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGL 126
Query: 153 --EVDWGNGLEYLLIDTPPGTSDEHL-----SLVQYLKGLPDI----------------- 188
+ ++++ DT P L + ++ P+
Sbjct: 127 LTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQREQY 186
Query: 189 -------------GAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFVCPKCTK 235
++V Q+ +L +V + + + +V N
Sbjct: 187 AYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKTEAAND 246
Query: 236 P--SEIFPKDSGGAEKMCAELSVPFLGSVPIDP 266
+ I+ ++ + A+L+ ++ + P
Sbjct: 247 TLAAAIWEREQEALANLPADLAGLPTDTLFLQP 279
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter
vinelandii [TaxId: 354]}
Length = 289
Score = 88.0 bits (217), Expect = 6e-21
Identities = 40/255 (15%), Positives = 82/255 (32%), Gaps = 21/255 (8%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA 108
+ + GKGG+GKST T L LA+ + V ++ D S ++ +
Sbjct: 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKK--VMIVGCDPKADSTRLILHSKAQNTIMEM 60
Query: 109 SGWSPVFLE-ENLSVMSIGFL------LNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLE 161
+ + + E V+ G+ P+ V G T I E + + L+
Sbjct: 61 AAEAGTVEDLELEDVLKAGYGGVKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDLD 120
Query: 162 YLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGV 221
++ D ++ +I +V + + +++ K
Sbjct: 121 FVFYDVLGDVVCGGFAMPIRENKAQEI--YIVCSGEMMAMYAANNISKGIVKYA------ 172
Query: 222 VENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI-- 279
N + S ++ + +L + VP D +V R + I
Sbjct: 173 --NSGSVRLGGLICNSRNTDREDELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEY 230
Query: 280 DTPSACVDAIQQIVQ 294
D + D + + +
Sbjct: 231 DPKAKQADEYRALAR 245
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 86.5 bits (213), Expect = 2e-20
Identities = 38/259 (14%), Positives = 79/259 (30%), Gaps = 31/259 (11%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA 108
+ + + GKGG+GKST T L L ++ + V+ D S ++G L ++
Sbjct: 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKT--IMVVGCDPKADSTRLLLGGLAQKSVLDT 59
Query: 109 SGWSPVFLE---------ENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNG 159
+E + + G RG + + + L
Sbjct: 60 LREEGEDVELDSILKEGYGGIRCVESGGPEP--GVGCAGRGIITSINMLEQLGAYTD--D 115
Query: 160 LEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLD-VRKEIDFCRK-VNIP 217
L+Y+ D ++ +I + + + + K I K +
Sbjct: 116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVR 175
Query: 218 IIGVVENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTS 277
+ G++ N EL + VP P+VT+ +
Sbjct: 176 LGGIICNSRKVANEYELLD------------AFAKELGSQLIHFVPRSPMVTKAEINKQT 223
Query: 278 AIDTP--SACVDAIQQIVQ 294
I+ + +++ +
Sbjct: 224 VIEYDPTCEQAEEYRELAR 242
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 237
Score = 80.9 bits (198), Expect = 1e-18
Identities = 43/247 (17%), Positives = 85/247 (34%), Gaps = 22/247 (8%)
Query: 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSAS 109
+ ++SGKGG GK+T T L+ L V +D D+ ++ ++G+ + V
Sbjct: 5 ISIVSGKGGTGKTTVTANLSVALGDRGRK--VLAVDGDLTMANLSLVLGVDDPDVTLHDV 62
Query: 110 GWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPP 169
+E+ + + + P K + + + +++LID P
Sbjct: 63 LAGEANVEDAIYMTQFDNVYVLPGAVDWEHVLKADPRKLPEVIKSLKDK-FDFILIDCPA 121
Query: 170 GTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFV 229
G + +S + + + ++ KV I + + FV
Sbjct: 122 GLQLDAMSAMLSGEEALLVTNPEISCLT------------DTMKVGIVLKKAGLAILGFV 169
Query: 230 CPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI--DTPSACVD 287
+ + P E + VP L +P DP + EG A+ S
Sbjct: 170 LNRYGRSDRDIPP-----EAAEDVMEVPLLAVIPEDPAIREGTLEGIPAVKYKPESKGAK 224
Query: 288 AIQQIVQ 294
A ++ +
Sbjct: 225 AFVKLAE 231
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 79.0 bits (193), Expect = 5e-18
Identities = 23/231 (9%), Positives = 53/231 (22%), Gaps = 20/231 (8%)
Query: 49 KVLVLSGKG-GVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQS 107
K ++G VGK+ + L + + G ++ +
Sbjct: 2 KRYFVTGTDTEVGKTVASCALLQAAKAAG--YRTAGYKPVASGSEKTPEGLRNSDALALQ 59
Query: 108 ASGWSPVFLEE---NLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLL 164
+ + + S + + +R + DW +
Sbjct: 60 RNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWV----LVE 115
Query: 165 IDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVEN 224
T + I+V + + + + + G V N
Sbjct: 116 GAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVAN 175
Query: 225 MATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEG 275
T + + + + P LG +P + G
Sbjct: 176 DVTPPGKRHAE----------YMTTLTRMIPAPLLGEIPWLAENPENAATG 216
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 232
Score = 67.5 bits (163), Expect = 8e-14
Identities = 47/247 (19%), Positives = 84/247 (34%), Gaps = 23/247 (9%)
Query: 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSAS 109
+ V SGKGG GK+T T L LA+ DV ++D DI ++ ++G+ V
Sbjct: 4 ITVASGKGGTGKTTITANLGVALAQLGH--DVTIVDADITMANLELILGMEGLPVTLQNV 61
Query: 110 GWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTPP 169
+ + V+ G + + +++ D
Sbjct: 62 LAGEAR-------IDEAIYVGPGGVKVVPAGVSLEGLRKANPEKLEDVLTQIMESTDILL 114
Query: 170 GTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENMATFV 229
+ L + ++V P+ S+ D K ++ ++GVV N T +
Sbjct: 115 LDAPAGLERSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 174
Query: 230 CPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPIDPLVTRHCDEGTSAI--DTPSACVD 287
+ K ++ A L +G +P DP V R G + S
Sbjct: 175 GIEMAKN------------EIEAILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAAR 222
Query: 288 AIQQIVQ 294
AI ++
Sbjct: 223 AIVELAN 229
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 54.3 bits (130), Expect = 1e-09
Identities = 31/186 (16%), Positives = 56/186 (30%), Gaps = 13/186 (6%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQ 106
+ L G G GK+T LA ++ D P+ + LL E+V
Sbjct: 9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRR--PLLVAADTQRPAAREQLRLLGEKVGV 66
Query: 107 ----SASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEY 162
G SP + + + + R ++ + + E
Sbjct: 67 PVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEV 126
Query: 163 LLIDTPPGTSDEHLSLVQ-YLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPI--I 219
LL+ T E LS+ + + + + G ++ + + PI
Sbjct: 127 LLVL-DAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAA---LSARHVTGKPIYFA 182
Query: 220 GVVENM 225
GV E
Sbjct: 183 GVSEKP 188
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 48.1 bits (113), Expect = 2e-07
Identities = 34/188 (18%), Positives = 59/188 (31%), Gaps = 23/188 (12%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDI-CGPSMPRMMGLL------- 100
+ + L+G GVGK+T + + VL S VD + G + + L
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 101 -------NEQVHQSASGWSPVFLEENLSVMSIGF------LLNSPDDAVIWRGPKKNTMI 147
+ G V L + VI K
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 148 RQFLS-EVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLL-DVR 205
+ F+ + +++ T P + L+LV+ ++ D+ VT LL D+
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDIV 181
Query: 206 KEIDFCRK 213
+ RK
Sbjct: 182 TCVQSSRK 189
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 39.5 bits (92), Expect = 2e-04
Identities = 23/176 (13%), Positives = 59/176 (33%), Gaps = 28/176 (15%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQ 106
K V+ G G+GK+T ++ L + + + + + +
Sbjct: 26 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVP----ITKVKGKIF----FLPE 77
Query: 107 SASGWSPVFLEENLSVMSIGFLLNSPDDAVIWR-------------GPKKNTMIRQFLSE 153
+ +E+ L ++ + + + ++ G IR+
Sbjct: 78 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLA 137
Query: 154 VDWGNGLEYLLIDTP-----PGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDV 204
E ++D P + + L + + L + G +++++ +E+S DV
Sbjct: 138 STLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEI--LKEKGIVIISSREELSYCDV 191
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 38.0 bits (87), Expect = 6e-04
Identities = 15/135 (11%), Positives = 33/135 (24%), Gaps = 3/135 (2%)
Query: 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM-PRMMGLLNEQVHQSA 108
++V+ G GK+ + L R L V ++ M
Sbjct: 4 LIVMVGLPARGKTYISKKLTRYLNF--IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEE 61
Query: 109 SGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTP 168
FL ++ R + NG + +++
Sbjct: 62 GLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESI 121
Query: 169 PGTSDEHLSLVQYLK 183
+ + + +K
Sbjct: 122 CVDPEVIAANIVQVK 136
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 37.3 bits (85), Expect = 9e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 44 SNVKHKVLVLSGKGGVGKSTFTNLLARVL 72
+N H + VL G G GKS + +A L
Sbjct: 2 TNHDHHIYVLMGVSGSGKSAVASEVAHQL 30
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 36.9 bits (84), Expect = 0.001
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 48 HKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDV 81
+KV+V++G GVG +T + L L K + +
Sbjct: 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKM 34
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 36.5 bits (84), Expect = 0.002
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 3/125 (2%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQ 106
K V ++ G G GKST N++ L V + DI + + Q
Sbjct: 29 KGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE--NKDITNKEPAELYHYGIVRTFQ 86
Query: 107 SASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLID 166
+ + + ENL + I + + + K + + ++ L +L D
Sbjct: 87 TPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-D 145
Query: 167 TPPGT 171
G
Sbjct: 146 RKAGE 150
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 35.7 bits (81), Expect = 0.003
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ 103
++ +L+LSG G GKST LA + L I + + ++Q
Sbjct: 1 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQ 59
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 35.4 bits (80), Expect = 0.004
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMG 98
++++L+G GKS L VL + + V L + G
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGG 53
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 35.8 bits (82), Expect = 0.004
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87
++ ++G VGKST +L +L++ E V ++ D
Sbjct: 82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD 119
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 35.0 bits (79), Expect = 0.004
Identities = 28/156 (17%), Positives = 48/156 (30%), Gaps = 12/156 (7%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESV-----DVGVLDLDICGPSMPRMMGLLNEQ 103
+L + G GK+T L L +D+D G + Q
Sbjct: 3 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQ 62
Query: 104 VHQSASGWSPVFLEENLSVMS-----IGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGN 158
++ + E + S D ++ G K + + L G+
Sbjct: 63 TIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGH 122
Query: 159 GLEYLLIDTPPGT--SDEHLSLVQYLKGLPDIGAIV 192
E L+ID SD L+L L + D+ +
Sbjct: 123 RPEELVIDRHVIAVASDVPLNLDVALLDINDVEGLA 158
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 35.6 bits (82), Expect = 0.005
Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 10/136 (7%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQ 106
V+ + G G GKSTF + + S ++ V ++++ ++ Q+
Sbjct: 27 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRL 86
Query: 107 SASGWSPVFLEENL-SVMSIG-FLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLL 164
+ + VF NL S M++ ++ +P + ++L++V G++
Sbjct: 87 LRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV----GIDERA 142
Query: 165 IDTPPGTSDEHLSLVQ 180
P HLS Q
Sbjct: 143 QGKYPV----HLSGGQ 154
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 35.0 bits (79), Expect = 0.005
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDV 81
K+ +++G GVGKST + +L + +
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKI 34
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 34.3 bits (78), Expect = 0.009
Identities = 27/222 (12%), Positives = 56/222 (25%), Gaps = 41/222 (18%)
Query: 43 LSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE 102
+ V+++ G G GK+T LA++ +S V + D + E
Sbjct: 6 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKS--VVLAAADTFRAAA-------IE 56
Query: 103 QVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEY 162
Q+ + + +
Sbjct: 57 QLKIWGE--------------------RVGATVISHSEGADPAAVAFDAVAHALARNKDV 96
Query: 163 LLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVV 222
++IDT + + + K + + P E L+ G
Sbjct: 97 VIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVID------------ATTGQN 144
Query: 223 ENMATFVCPKCTKPSEIFPKDSGGAEKMCAELSVPFLGSVPI 264
+ + + + I G K L++ +PI
Sbjct: 145 GLVQAKIFKEAVNVTGIILTKLDGTAKGGITLAIARELGIPI 186
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 34.0 bits (78), Expect = 0.013
Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 18/132 (13%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL-DICGPSMPRMMGLLNEQVH 105
K + L G+ G GKST +L+ R + + DL + S+ + L V
Sbjct: 40 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL----VS 95
Query: 106 QSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLI 165
Q+ ++ + + + F++++D G +
Sbjct: 96 QNVHLFNDTVANNIA----YARTEEYSREQIEEA--ARMAYAMDFINKMDNG-------L 142
Query: 166 DTPPGTSDEHLS 177
DT G + LS
Sbjct: 143 DTIIGENGVLLS 154
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 33.6 bits (75), Expect = 0.015
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 2/115 (1%)
Query: 37 ELVKSHLS-NVKHKVLV-LSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMP 94
L K+ L+ ++++ + G GK+T N L++ L + SV V +D I +
Sbjct: 9 FLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKR 68
Query: 95 RMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQ 149
G + + + L P K T+
Sbjct: 69 YHTGNEEWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLS 123
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 34.1 bits (78), Expect = 0.016
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87
KH ++ ++G G G ST + ++ + E V ++ D
Sbjct: 2 KKHPIISVTGSSGAGTSTVKHTFDQIFRR--EGVKAVSIEGD 41
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 33.6 bits (77), Expect = 0.017
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQ 106
+ LVL G G GK+T ++A + + + G D P R + + V Q
Sbjct: 31 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRD-VTYLPPKDRNISM----VFQ 85
Query: 107 SASGWSPVFLEENL 120
S + W + + EN+
Sbjct: 86 SYAVWPHMTVYENI 99
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 33.3 bits (76), Expect = 0.022
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL-DICGPSMPRMMGLLNEQVH 105
+ +V+ + G+ G GKST T L+ R N V + DL + R +G++ +
Sbjct: 28 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNV 87
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 32.7 bits (73), Expect = 0.026
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVL 72
K+ +++G GVGKST LA L
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQL 26
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 32.7 bits (73), Expect = 0.030
Identities = 11/57 (19%), Positives = 17/57 (29%)
Query: 37 ELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM 93
V + + L+G G GK+T + L L D G +
Sbjct: 8 GQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNK 64
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 32.3 bits (72), Expect = 0.037
Identities = 8/58 (13%), Positives = 19/58 (32%)
Query: 51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA 108
++++G+ GVGK+T + L K + + + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 32.7 bits (74), Expect = 0.037
Identities = 14/68 (20%), Positives = 24/68 (35%)
Query: 43 LSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNE 102
+ V+++ G GVGK+T LAR + +SV + D +
Sbjct: 4 VEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRN 63
Query: 103 QVHQSASG 110
+ A
Sbjct: 64 NIPVIAQH 71
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 32.4 bits (72), Expect = 0.041
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 4/61 (6%)
Query: 37 ELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRM 96
+LV S+ + H L++ G+G L L++ M
Sbjct: 13 KLVASYQAGRGHHALLIQALPGMGDDA----LIYALSRYLLCQQPQGHKSCGHCRGCQLM 68
Query: 97 M 97
Sbjct: 69 Q 69
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 32.5 bits (73), Expect = 0.046
Identities = 28/191 (14%), Positives = 49/191 (25%), Gaps = 14/191 (7%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD------ICGPSMPRMMGLL 100
L ++G G GKSTF +L + V V +D RM L
Sbjct: 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLA 112
Query: 101 NEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGL 160
+ S L LL + + + Q SE + +
Sbjct: 113 RAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVV--IVETVGVGQ--SETEVARMV 168
Query: 161 E-YLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPII 219
+ ++ + G D + IV+ + +V +
Sbjct: 169 DCFISLQIAGGGDDLQG---IKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILR 225
Query: 220 GVVENMATFVC 230
+ V
Sbjct: 226 RKYDEWQPRVL 236
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 32.5 bits (73), Expect = 0.048
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 22 SICSSGAAKSVDPGIELVKSHLSNVKHKVLV-LSGKGGVGKSTFTNLLARVLAKSNESVD 80
++ S A +L+ + L + V ++G GVGKST + L +L + V
Sbjct: 24 TLAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVA 83
Query: 81 VGVLD 85
V +D
Sbjct: 84 VLAVD 88
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 32.5 bits (72), Expect = 0.050
Identities = 21/184 (11%), Positives = 43/184 (23%), Gaps = 8/184 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA 108
+ + G+ GK+ + LA +D G +
Sbjct: 24 SITEMFGEFRTGKTQICHTLAVTCQL---PIDRGGGEGKAMYIDTEGTFRPERLLAVAER 80
Query: 109 SGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLIDTP 168
G S + +N++ + + L VD L
Sbjct: 81 YGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYA--LLIVDSATALYRTDYSGR 138
Query: 169 PGTSD---EHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNIPIIGVVENM 225
S ++ L L D + V +V + ++ +
Sbjct: 139 GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHA 198
Query: 226 ATFV 229
+T
Sbjct: 199 STTR 202
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 32.2 bits (72), Expect = 0.050
Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 9/141 (6%)
Query: 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVD---VGVLDLDICGPSMPRMMGLLNEQVHQ 106
++ +SG GKS+ + ++L ++ V +L D S R+ L +EQ +
Sbjct: 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQD----SFYRV--LTSEQKAK 57
Query: 107 SASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDWGNGLEYLLID 166
+ G + I L + + P + + E + +L +
Sbjct: 58 ALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFE 117
Query: 167 TPPGTSDEHLSLVQYLKGLPD 187
+ + + +K D
Sbjct: 118 GILAFYSQEVRDLFQMKLFVD 138
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 32.3 bits (72), Expect = 0.051
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSN 76
+ L + G VGKSTF LL + + +
Sbjct: 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWH 30
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 31.9 bits (71), Expect = 0.059
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 45 NVKHKVLVLSGKGGVGKSTFTNLLARVL 72
+ +++ G G GK+T+ N +
Sbjct: 6 GTQPFTVLIEGNIGSGKTTYLNHFEKYK 33
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 32.0 bits (71), Expect = 0.060
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 52 VLSGKGGVGKSTFTNLLARVLAKSNESV 79
+ G G GK T L+ + SV
Sbjct: 4 AIEGVDGAGKRTLVEKLSGAFRAAGRSV 31
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 32.0 bits (72), Expect = 0.062
Identities = 13/73 (17%), Positives = 26/73 (35%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQ 106
+ + G G GK+TF ++A + S + + G + V Q
Sbjct: 30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQ 89
Query: 107 SASGWSPVFLEEN 119
+ + + + EN
Sbjct: 90 TWALYPNLTAFEN 102
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 32.0 bits (72), Expect = 0.067
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 36 IELVKSHLSNVKHKVL--VLSGKGGVGKSTFTNLLARVLAKSNESVDVGV 83
+ L + VL ++G+ G GKS+F N L + + + GV
Sbjct: 42 NSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV 91
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 31.9 bits (71), Expect = 0.071
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSN 76
K + + G GKSTF N+L ++
Sbjct: 3 KKISIEGNIAAGKSTFVNILKQLCEDWE 30
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 31.4 bits (70), Expect = 0.074
Identities = 6/37 (16%), Positives = 9/37 (24%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLD 85
V + G GK+T + V
Sbjct: 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 38
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 31.6 bits (71), Expect = 0.082
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87
K +V+++ G GVGK+T L R + V D
Sbjct: 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF 45
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 31.4 bits (70), Expect = 0.082
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 48 HKVLVLSGKGGVGKSTFTNLLAR 70
K LVL G GVG+ N L
Sbjct: 3 RKTLVLLGAHGVGRRHIKNTLIT 25
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 31.1 bits (69), Expect = 0.098
Identities = 5/25 (20%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 46 VKHKVLVLSGKGGVGKSTFTNLLAR 70
++ K++++ G G GK+ + ++
Sbjct: 1 IRKKLVIV-GDGACGKTCLLIVNSK 24
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 31.1 bits (70), Expect = 0.11
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVH 105
+ VL G G GKS F L+A ++ V + D+ P R +G V
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER-RGIGF----VP 76
Query: 106 QSASGWSPVFLEEN 119
Q + + + + N
Sbjct: 77 QDYALFPHLSVYRN 90
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 30.8 bits (68), Expect = 0.12
Identities = 18/174 (10%), Positives = 41/174 (23%), Gaps = 15/174 (8%)
Query: 49 KVLVLSGKGGVGKSTFTNLLA-------------RVLAKSNESVDVGVLDLDICGPSMPR 95
K + + G GKS N LA + + + + D ++
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGH 67
Query: 96 MMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVD 155
+ H + + P + + + I +
Sbjct: 68 QRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEW 127
Query: 156 WGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEID 209
+GL + + L + L + + V+ I+
Sbjct: 128 VDDGLRS--LGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIE 179
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 30.5 bits (67), Expect = 0.13
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA 108
+ + L G G GKST LA+ L D G + + L E+ +
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEF--YDSDQEIEKRTGADVGWVFDLEGEEGFRDR 60
Query: 109 SGW 111
Sbjct: 61 EEK 63
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 30.9 bits (69), Expect = 0.13
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 6/74 (8%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARV-----LAKSNESVDVGVLDLDICGPSMPRMMGLLN 101
H++L+L G G GKST + + V ++ + R
Sbjct: 6 THRLLLL-GAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKW 64
Query: 102 EQVHQSASGWSPVF 115
Q + V
Sbjct: 65 IQCFNDVTAIIFVV 78
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 31.3 bits (70), Expect = 0.13
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 37 ELVKSHLSNVKHKVLV--LSGKGGVGKSTFTN-LLARVLAKSNESVDVGVLDLD 87
+ + L SG G GKS + + ++ K +G +D
Sbjct: 14 KYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASID 67
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 31.1 bits (70), Expect = 0.14
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 52 VLSGKGGVGKSTFTNLLARVLAKSNESVDV 81
L G G+GK+T A + + +
Sbjct: 9 YLDGAYGIGKTTAAEEFLHHFAITPNRILL 38
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 30.6 bits (68), Expect = 0.16
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV 83
+ ++S G GKS+ L + L K+ D V
Sbjct: 3 TLYIVSAPSGAGKSS----LIQALLKTQPLYDTQV 33
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 30.5 bits (69), Expect = 0.17
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMM 97
K + + G G GKST NL+ R ++ + + ++ R
Sbjct: 43 KGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 93
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 30.6 bits (69), Expect = 0.18
Identities = 11/49 (22%), Positives = 16/49 (32%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPR 95
+V L G G GKST LL + + + + L
Sbjct: 39 PGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 30.7 bits (69), Expect = 0.19
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 41 SHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE 77
SH+ + + L G G+GKST ++A + +
Sbjct: 1 SHMVTIV--RIYLDGVYGIGKSTTGRVMASAASGGSP 35
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 30.0 bits (66), Expect = 0.20
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESV 79
+V+VLSG VGKST L + + SV
Sbjct: 3 RVVVLSGPSAVGKSTVVRCLRERIPNLHFSV 33
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 30.2 bits (68), Expect = 0.20
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL-DICGPSMPRMMGLLNEQVH 105
+ ++ +G G GKST +LL R + + + + +I + +G +++
Sbjct: 27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSA 86
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 29.7 bits (65), Expect = 0.24
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 45 NVKHKVLVLSGKGGVGKSTFTNLLARV 71
N ++V+++ G+ GVGKST N+ A V
Sbjct: 1 NTYYRVVLI-GEQGVGKSTLANIFAGV 26
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 30.0 bits (66), Expect = 0.24
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVL 72
K ++++G G GK++ ++A L
Sbjct: 4 KGINILITGTPGTGKTSMAEMIAAEL 29
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 29.9 bits (67), Expect = 0.28
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVG 82
+ ++L G G GK+T ++A + S + +G
Sbjct: 28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIG 63
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 29.7 bits (66), Expect = 0.29
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESV 79
V++L G G GK+T LA K V
Sbjct: 14 VIMLVGVQGTGKATTAGKLAYFYKKKGFKV 43
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 30.1 bits (66), Expect = 0.29
Identities = 19/226 (8%), Positives = 64/226 (28%), Gaps = 12/226 (5%)
Query: 37 ELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRM 96
L+ + + + G+ G+GK+T + ++++ + V + + P +
Sbjct: 35 RLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 94
Query: 97 MGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDW 156
+L+ V + + G A++ +N + L E
Sbjct: 95 YTILSLIVR-----------QTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQS 143
Query: 157 GNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVTTPQEVSLLDVRKEIDFCRKVNI 216
+ + H + +V + + +S + + +
Sbjct: 144 MLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFK 203
Query: 217 PIIGVVENMATFVCPKCTKPSEIFPKD-SGGAEKMCAELSVPFLGS 261
+ ++ + + + ++ +++ G
Sbjct: 204 LHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGG 249
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 30.1 bits (66), Expect = 0.29
Identities = 13/112 (11%), Positives = 36/112 (32%)
Query: 45 NVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQV 104
K + ++ G+ G GKS+ + + L D+ + G + + +
Sbjct: 20 EFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDG 79
Query: 105 HQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSEVDW 156
+ + + + ++ L+ + V K + + L +
Sbjct: 80 TKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNI 131
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 30.0 bits (67), Expect = 0.30
Identities = 10/54 (18%), Positives = 26/54 (48%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLL 100
+ ++ L G G GK+T +++ ++ S+ V V ++ + +++ L
Sbjct: 27 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYL 80
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 29.5 bits (65), Expect = 0.31
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMM 97
K +V G G GKST LA+ L D+ LD D
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKDL-------DLVFLDSDFLIEQKFNQK 42
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 29.6 bits (65), Expect = 0.32
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 46 VKHKVLVLSGKGGVGKSTFTNLLAR 70
VK K++V+ G GK+ ++ A+
Sbjct: 1 VKCKIVVV-GDSQCGKTALLHVFAK 24
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 29.3 bits (64), Expect = 0.32
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
K+++ G G GKST+
Sbjct: 3 KIILTIGCPGSGKSTWAREFIA 24
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 29.9 bits (67), Expect = 0.32
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVG 82
+ + +V G G GKST ++A + ++ + +G
Sbjct: 25 EGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 60
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 30.0 bits (67), Expect = 0.36
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVL 72
+ + G G+GK+T T LL +
Sbjct: 5 LRVYIDGPHGMGKTTTTQLLVALG 28
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 29.6 bits (65), Expect = 0.36
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 50 VLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMP 94
++V G G GK+T T R L + + V ++LD +P
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYK---VAYVNLDTGVKELP 43
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 29.5 bits (65), Expect = 0.39
Identities = 8/44 (18%), Positives = 19/44 (43%)
Query: 37 ELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVD 80
EL++ + +L G+ G GK++ + + + +D
Sbjct: 21 ELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVID 64
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 29.2 bits (64), Expect = 0.39
Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 46 VKHKVLVLSGKGGVGKSTFTN 66
V+ K++++ G GG GK+TF
Sbjct: 2 VQFKLVLV-GDGGTGKTTFVK 21
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 29.2 bits (64), Expect = 0.44
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDV 81
+ ++VL G GKST + L L + ++
Sbjct: 2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL 36
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 29.4 bits (64), Expect = 0.46
Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 2/87 (2%)
Query: 36 IELVKSHLSNVKH--KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSM 93
L+ + L N H L G+ G GK+ L + + V + +
Sbjct: 29 DILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTA 88
Query: 94 PRMMGLLNEQVHQSASGWSPVFLEENL 120
+ + G S L
Sbjct: 89 IIGEIARSLNIPFPRRGLSRDEFLALL 115
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 29.1 bits (65), Expect = 0.46
Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQ 106
+ +++ L G G GK+T + +A ++ + DI + + V +
Sbjct: 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN--GQDITNKPAHVINRMGIALVPE 88
Query: 107 SASGWSPVFLEENLSVMSIG 126
+ + + ENL + +
Sbjct: 89 GRRIFPELTVYENLMMGAYN 108
>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase
MurC {Thermotoga maritima [TaxId: 2336]}
Length = 207
Score = 29.3 bits (64), Expect = 0.48
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 36 IELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGV 83
+ + L K + ++G GK+T T ++A VL +S V +
Sbjct: 2 LHYFRDTLKREKKEEFAVTGT--DGKTTTTAMVAHVLKHLRKSPTVFL 47
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 28.8 bits (63), Expect = 0.51
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
+ +V+SG G GKST L
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFA 23
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 28.8 bits (63), Expect = 0.53
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 43 LSNVKHKVLVLSGKGGVGKSTFTNLLAR 70
++ +HKV+++ G GK+T +
Sbjct: 11 FNHQEHKVIIV-GLDNAGKTTILYQFSM 37
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 28.7 bits (63), Expect = 0.53
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 48 HKVLVLSGKGGVGKSTFTN 66
HKV+++ G GGVGKS T
Sbjct: 5 HKVIMV-GSGGVGKSALTL 22
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 29.0 bits (64), Expect = 0.53
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 45 NVKHKVLVLSGKGGVGKSTFTNLL 68
+V +++ GKGGVGKS+ N +
Sbjct: 29 DVNSLTILVMGKGGVGKSSTVNSI 52
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 28.8 bits (63), Expect = 0.54
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
+ +VLSG G GKST L +
Sbjct: 1 RPVVLSGPSGAGKSTLLKKLFQ 22
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 29.3 bits (65), Expect = 0.55
Identities = 21/146 (14%), Positives = 47/146 (32%), Gaps = 11/146 (7%)
Query: 36 IELVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVD-VGVLDLDICGPSM 93
+ +K + N+ K + + G GK+T L + +V+ G ++
Sbjct: 141 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAI 200
Query: 94 PRMMGLLNE---QVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQF 150
+ + + + +S S + + L + D +V KK+ R
Sbjct: 201 DQFLVVFEDVKGTGGESRDLPSGQGINN------LDNLRDYLDGSVKVNLEKKHLNKRTQ 254
Query: 151 LSEVDWGNGLEYLLIDTPPGTSDEHL 176
+ EY + T + +
Sbjct: 255 IFPPGIVTMNEYSVPKTLQARFVKQI 280
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 28.8 bits (64), Expect = 0.56
Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAK--SNESVDVGVLDLDICGPSMPRMMGLLN 101
V ++L+G+ G+GKS L ++++++ L + G + +
Sbjct: 13 VFGVGVLLTGRSGIGKSECALDLINKNHLFVGDDAIEIYRLGNRLFGRAQEVAKKFME 70
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 28.9 bits (64), Expect = 0.62
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDV 81
+ V+ G G GK+ F L+A + + +
Sbjct: 25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli
[TaxId: 562]}
Length = 210
Score = 28.7 bits (63), Expect = 0.64
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSN 76
+ K +V+ G G GK+T N++ L +
Sbjct: 1 RSKYIVIEGLEGAGKTTARNVVVETLEQLG 30
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 28.8 bits (63), Expect = 0.67
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 46 VKHKVLVLSGKGGVGKSTFTNLLARVLAKSNE 77
V V L GG GKS LA +A +
Sbjct: 27 VAGTVGALVSPGGAGKSMLALQLAAQIAGGPD 58
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 28.5 bits (62), Expect = 0.68
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 50 VLVLSGKGGVGKSTFTNLLARVLAK 74
+ L+G GK L L +
Sbjct: 8 TIFLTGYMNSGKDAIARALQVTLNQ 32
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 28.7 bits (64), Expect = 0.80
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVG 82
K ++L ++G G GK++ L+ L S +
Sbjct: 61 KGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 96
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 28.4 bits (62), Expect = 0.91
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA 108
K+L+L G G GKST + K G+++ + M + Q +
Sbjct: 4 KLLLL-GAGESGKSTIVKQM-----KIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSERK 57
Query: 109 SGW 111
Sbjct: 58 KWI 60
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 28.0 bits (61), Expect = 0.92
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 51 LVLSGKGGVGKSTFTNLLARVL 72
++L+G GVGK+T LA
Sbjct: 7 ILLTGTPGVGKTTLGKELASKS 28
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
{Bacteriophage T4 [TaxId: 10665]}
Length = 241
Score = 28.4 bits (62), Expect = 0.95
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 49 KVLVLSGKGGVGKSTFTNLLA 69
K++ LSG GK T + +
Sbjct: 2 KLIFLSGVKRSGKDTTADFIM 22
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 28.2 bits (63), Expect = 1.0
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 36 IELVKSHLSNV-KHKVLVLSGKGGVGKSTFTNLLARVL 72
+ +KS L K LV G GKS F +
Sbjct: 40 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 77
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.1 bits (61), Expect = 1.0
Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 47 KHKVLVLSGKGGVGKSTFTN 66
K++++V+ G GGVGKS T
Sbjct: 5 KYRLVVV-GGGGVGKSALTI 23
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 28.1 bits (61), Expect = 1.0
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLAR 70
HK++V+ G GGVGKS T +
Sbjct: 6 THKLVVV-GGGGVGKSALTIQFIQ 28
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 27.8 bits (60), Expect = 1.1
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
++L+L G G GK+T L
Sbjct: 7 RILIL-GLDGAGKTTILYRLQV 27
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 212
Score = 28.1 bits (61), Expect = 1.1
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLD 87
+V +L G G +GK LA LA + VG +
Sbjct: 2 RVALLGGTGNLGKG-----LALRLATLGHEIVVGSRREE 35
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 27.9 bits (62), Expect = 1.1
Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ--- 103
+ + + + G G GKST N++ + + V + ++ + + ++
Sbjct: 30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID--NIKTNDLDDDELTKIRRDKIGF 87
Query: 104 VHQSASGWSPVFLEENLSV 122
V Q + + EN+ +
Sbjct: 88 VFQQFNLIPLLTALENVEL 106
>d1r2za3 g.39.1.8 (A:229-274) DNA repair protein MutM (Fpg)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 46
Score = 25.4 bits (56), Expect = 1.2
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 206 KEIDFCRKVNIPIIG-VVENMATFVCPKCTK 235
++ + C++ PI VV T CP+C +
Sbjct: 16 RQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR 46
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 27.8 bits (60), Expect = 1.2
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARV 71
KVL+L G GVGKS + V
Sbjct: 3 KVLLL-GAPGVGKSALARIFGGV 24
>d1tdza3 g.39.1.8 (A:225-271) DNA repair protein MutM (Fpg)
{Lactococcus lactis [TaxId: 1358]}
Length = 47
Score = 25.8 bits (57), Expect = 1.2
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 206 KEIDFCRKVNIPIIG-VVENMATFVCPKCTK 235
K + C + I V T CP C +
Sbjct: 16 KTGEKCSRCGAEIQKIKVAGRGTHFCPVCQQ 46
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 27.9 bits (61), Expect = 1.2
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
K+L++ G VGK++F A
Sbjct: 7 KILII-GNSSVGKTSFLFRYAD 27
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 28.0 bits (61), Expect = 1.2
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 43 LSNVKHKVLVLSGKGGVGKSTFTNLLAR 70
S + V+ + G G GK T L +
Sbjct: 3 FSPDQVSVIFVLGGPGAGKGTQCEKLVK 30
>g1tme.1 b.121.4.1 (4:,2:) Theilovirus capsid proteins {Theiler's
murine encephalomyelitis virus, strain da [TaxId:
12124]}
Length = 280
Score = 28.2 bits (63), Expect = 1.2
Identities = 6/23 (26%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 250 MCAELSVPFLGSVPIDPLVTRHC 272
+L VP++ P T+H
Sbjct: 214 TTVDLEVPYVNIAPTSS-WTQHA 235
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.5 bits (60), Expect = 1.2
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA 108
K +++ G GVGKS LL + K + V + ++ + + Q+ +A
Sbjct: 5 KYIII-GDTGVGKSC---LLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTA 60
Query: 109 SGWSPVFLEENLSVMSIGFLLN 130
S + + + G LL
Sbjct: 61 GQESFRSITRSYYRGAAGALLV 82
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 27.6 bits (60), Expect = 1.4
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAK 74
+ K++++ G GK+T N+L + L
Sbjct: 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 27.6 bits (60), Expect = 1.4
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVL 72
+ + + G G G +T LAR L
Sbjct: 3 EPIFMVGARGCGMTTVGRELARAL 26
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 27.8 bits (60), Expect = 1.4
Identities = 11/111 (9%), Positives = 33/111 (29%), Gaps = 5/111 (4%)
Query: 41 SHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLL 100
L ++ + ++ G GKS+ + ++ ++ LDL
Sbjct: 22 EKLKGLRAPITLVLGLRRTGKSS----IIKIGIN-ELNLPYIYLDLRKFEERNYISYKDF 76
Query: 101 NEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFL 151
++ + + ++ +I ++ ++ K L
Sbjct: 77 LLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLL 127
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 27.7 bits (60), Expect = 1.4
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
KV++L G GVGK++ +
Sbjct: 4 KVIIL-GDSGVGKTSLMHRYVN 24
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 27.5 bits (60), Expect = 1.5
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
KV+++ G GVGK+
Sbjct: 8 KVMLV-GDSGVGKTCLLVRFKD 28
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 27.3 bits (59), Expect = 1.5
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
K++V+ G VGK+ T
Sbjct: 4 KIIVI-GDSNVGKTCLTYRFCA 24
>g1aym.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human
rhinovirus 16, (HRV-16) [TaxId: 31708]}
Length = 296
Score = 27.9 bits (62), Expect = 1.6
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 250 MCAELSVPFLGSVPIDPLVTRHC 272
A L VP++ +VP+D + RH
Sbjct: 231 NSATLIVPYVNAVPMDS-MVRHN 252
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain
{Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 159
Score = 27.4 bits (60), Expect = 1.6
Identities = 28/169 (16%), Positives = 64/169 (37%), Gaps = 20/169 (11%)
Query: 25 SSGAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVL 84
S GA +EL + L ++ K +++ G G +GK+ +L+ R GV
Sbjct: 1 SEGAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDR-----------GVR 49
Query: 85 DLDICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKN 144
+ + + R + L + ++ L ++L+ + + VI
Sbjct: 50 AVLVANRTYERAVELARDLGGEA---VRFDELVDHLARSDVVVSATAAPHPVIHVD---- 102
Query: 145 TMIRQFLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQ-YLKGLPDIGAIV 192
+R+ L + D + + + I P + ++ ++ + D+ I
Sbjct: 103 -DVREALRKRDRRSPILIIDIANPRDVEEGVENIEDVEVRTIDDLRVIA 150
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 27.3 bits (59), Expect = 1.6
Identities = 7/22 (31%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
++ ++ G GK+TF N++A
Sbjct: 4 ELTLV-GLQYSGKTTFVNVIAS 24
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.5 bits (60), Expect = 1.6
Identities = 6/22 (27%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
K++++ G GVGK+ +
Sbjct: 7 KIVLI-GNAGVGKTCLVRRFTQ 27
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 27.4 bits (59), Expect = 1.6
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
K++V+ G G VGKS+ +
Sbjct: 4 KMVVV-GNGAVGKSSMIQRYCK 24
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 27.2 bits (59), Expect = 1.7
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
K LV+ G G GKS +
Sbjct: 7 KFLVI-GNAGTGKSCLLHQFIE 27
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 27.4 bits (59), Expect = 1.7
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
KV++L G GVGK++ N
Sbjct: 4 KVIIL-GDSGVGKTSLMNQYVN 24
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 27.1 bits (59), Expect = 1.7
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 43 LSNVKHKVLVLSGKGGVGKSTFTNLLARVL 72
L + +V+V G G GKSTF
Sbjct: 9 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 38
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 27.2 bits (59), Expect = 1.7
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 37 ELVKSHLSNVKHKVLVLSGKGGVGKSTFTN 66
+++ N + ++L+L G GK+T
Sbjct: 2 KVLSKIFGNKEMRILML-GLDAAGKTTILY 30
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 27.7 bits (61), Expect = 1.8
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 43 LSNVKHKVLVLS--GKGGVGKSTFTNLLAR 70
LS + ++V++ G GKS N LA
Sbjct: 25 LSAITQPMVVVAIVGLYRTGKSYLMNKLAG 54
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 27.0 bits (59), Expect = 1.8
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
K+L++ G GVGK+ +
Sbjct: 8 KLLLI-GDSGVGKTCVLFRFSE 28
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 27.2 bits (59), Expect = 1.9
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 40 KSHLSNVKHKVLVLSGKGGVGKSTFTNLLAR 70
KS L KV++L G GGVGKS+ N
Sbjct: 3 KSSL----FKVILL-GDGGVGKSSLMNRYVT 28
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 27.2 bits (59), Expect = 1.9
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
K+L L G GVGK+TF
Sbjct: 7 KLLAL-GDSGVGKTTFLYRYTD 27
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 26.9 bits (58), Expect = 2.0
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 51 LVLSGKGGVGKSTFTNLLARVL 72
VL G G GKST LA+ L
Sbjct: 4 AVLVGLPGSGKSTIGRRLAKAL 25
>g1ncq.1 b.121.4.1 (D:,B:) Rhinovirus coat proteins {Human
rhinovirus B 14 (HRV-14) [TaxId: 12131]}
Length = 295
Score = 27.5 bits (61), Expect = 2.0
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 250 MCAELSVPFLGSVPIDPLVTRHC 272
A + +P++ SVPID +TRH
Sbjct: 228 NTATIVIPYINSVPIDS-MTRHN 249
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 27.1 bits (59), Expect = 2.0
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
KV+++ G GVGKS + R
Sbjct: 6 KVVLI-GDSGVGKSNLLSRFTR 26
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 27.1 bits (59), Expect = 2.1
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
K +++ G GVGKS +
Sbjct: 6 KYIII-GDMGVGKSCLLHQFTE 26
>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum
vulgare), chloroplast [TaxId: 4558]}
Length = 175
Score = 26.9 bits (59), Expect = 2.1
Identities = 8/67 (11%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA 108
+ V G + L + + ++ + + +L + S + G+ E
Sbjct: 26 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSE---RSFQALEGVAMELEDSLY 82
Query: 109 SGWSPVF 115
V
Sbjct: 83 PLLREVS 89
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 27.2 bits (59), Expect = 2.1
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLAR 70
K K++ + G G GK T + +
Sbjct: 7 KSKIIFVVGGPGSGKGTQCEKIVQ 30
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 27.1 bits (59), Expect = 2.2
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
K+L++ G GVGKS +
Sbjct: 8 KLLLI-GNSGVGKSCLLLRFSD 28
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 27.2 bits (60), Expect = 2.3
Identities = 14/74 (18%), Positives = 25/74 (33%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQ 106
++ + G G GKST + + + SV V +L S + Q
Sbjct: 30 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ 89
Query: 107 SASGWSPVFLEENL 120
+ S + N+
Sbjct: 90 HFNLLSSRTVFGNV 103
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 26.7 bits (58), Expect = 2.3
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
K+L++ G GVGKS
Sbjct: 4 KILLI-GDSGVGKSCLLVRFVE 24
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.9 bits (58), Expect = 2.3
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 46 VKHKVLVLSGKGGVGKSTFTNLLAR 70
+ K+++L G+ VGKS+ +
Sbjct: 5 CQFKLVLL-GESAVGKSSLVLRFVK 28
>d2jfga3 c.72.2.1 (A:94-297)
UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
{Escherichia coli [TaxId: 562]}
Length = 204
Score = 27.0 bits (58), Expect = 2.4
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 57 GGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMM 97
G GKST T L+ + + +V VG +
Sbjct: 18 GSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDEC 58
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.8 bits (58), Expect = 2.4
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLAR 70
++KV+VL G GGVGKS T
Sbjct: 3 EYKVVVL-GSGGVGKSALTVQFVT 25
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 26.6 bits (57), Expect = 2.4
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
K+ +L G VGKS+ T
Sbjct: 6 KIAIL-GYRSVGKSSLTIQFVE 26
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 26.7 bits (58), Expect = 2.5
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
K+L++ G+ GVGKS+
Sbjct: 9 KILII-GESGVGKSSLLLRFTD 29
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 26.6 bits (57), Expect = 2.5
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
K+L L G GK+T ++L
Sbjct: 2 KLLFL-GLDNAGKTTLLHMLKN 22
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 26.9 bits (59), Expect = 2.5
Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 36 IELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLAR-VLAKSNESVDVGVLD 85
+E +K + + ++++G+ + L V ++ DV +D
Sbjct: 3 LETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID 53
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 26.9 bits (58), Expect = 2.5
Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 49 KVLVLSGKGGVGKSTFTN 66
K+ + G+ GVGKS
Sbjct: 4 KLAIF-GRAGVGKSALVV 20
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 26.9 bits (58), Expect = 2.6
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 43 LSNVKHKVLVLSGKGGVGKSTFTNLLAR 70
+ K V+ + G G GK T + R
Sbjct: 1 MEKSKPNVVFVLGGPGSGKGTQCANIVR 28
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 26.8 bits (58), Expect = 2.6
Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 49 KVLVLSGKGGVGKSTFTN 66
KV++L G+G VGK++
Sbjct: 5 KVVLL-GEGCVGKTSLVL 21
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 26.5 bits (57), Expect = 2.9
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
K++V+ G GGVGKS T +
Sbjct: 6 KLVVV-GDGGVGKSALTIQFFQ 26
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 26.6 bits (57), Expect = 2.9
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
++L+L G GK+T
Sbjct: 4 RLLML-GLDNAGKTTILKKFNG 24
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 26.5 bits (57), Expect = 3.0
Identities = 6/18 (33%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 49 KVLVLSGKGGVGKSTFTN 66
K++ L G+ VGK++
Sbjct: 2 KLVFL-GEQSVGKTSLIT 18
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 26.6 bits (57), Expect = 3.0
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 43 LSNVKHKVLVLSGKGGVGKSTFTNLLAR 70
L K++ L G GK+T ++L
Sbjct: 9 LYKKTGKLVFL-GLDNAGKTTLLHMLKD 35
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 26.5 bits (57), Expect = 3.1
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 49 KVLVLSGKGGVGKSTFTN 66
KV +L G GVGKS+
Sbjct: 6 KVCLL-GDTGVGKSSIMW 22
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.5 bits (57), Expect = 3.1
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
+V V G GGVGKS+ +
Sbjct: 4 RVAVF-GAGGVGKSSLVLRFVK 24
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 26.6 bits (57), Expect = 3.1
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 36 IELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSN 76
+ ++K L + ++ G G GK++ L + L +
Sbjct: 21 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 61
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain
{Caenorhabditis elegans [TaxId: 6239]}
Length = 277
Score = 26.7 bits (58), Expect = 3.1
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 43 LSNVKHKVLVLSGKGGVGKSTFTNLLAR 70
+ ++ L L G+ G GKS +
Sbjct: 39 MCDLDSFFLFLHGRAGSGKSVIASQALS 66
>g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins {Human
coxsackievirus A9 [TaxId: 12067]}
Length = 320
Score = 26.7 bits (59), Expect = 3.2
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 250 MCAELSVPFLGSVPIDPLVTRHC 272
A + +P++ SVP+D + RH
Sbjct: 255 NSATIVMPYINSVPMDN-MFRHY 276
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 26.2 bits (56), Expect = 3.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 51 LVLSGKGGVGKSTFTNLLAR 70
+V++G+ GKS+ N LA
Sbjct: 4 VVIAGRPNAGKSSLLNALAG 23
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 26.5 bits (57), Expect = 3.5
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
K++V+ G GGVGKS T L +
Sbjct: 5 KLVVV-GAGGVGKSALTIQLIQ 25
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 26.5 bits (57), Expect = 3.5
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 48 HKVLVLSGKGGVGKSTFTNLLAR 70
++++G GK++ LL
Sbjct: 3 QPSIIIAGPQNSGKTSLLTLLTT 25
>g1pvc.1 b.121.4.1 (4:,2:) Poliovirus coat proteins {Poliovirus type
3, strain Sabin [TaxId: 12086]}
Length = 334
Score = 26.7 bits (59), Expect = 3.5
Identities = 5/23 (21%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 250 MCAELSVPFLGSVPIDPLVTRHC 272
A + +P++ ++ ID + +H
Sbjct: 266 NSATIVLPYVNALAIDS-MVKHN 287
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 26.4 bits (57), Expect = 3.6
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ 103
K+L+L G G GKSTF + + + G+++ S+ M + Q
Sbjct: 4 KLLLL-GTGESGKSTFIKQMRII--HGSGVPTTGIIEYPFDLQSVIFRMVDVGGQ 55
>d1jzta_ c.104.1.1 (A:) Hypothetical protein YNL200c (YNU0_YEAST)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 26.6 bits (58), Expect = 3.7
Identities = 25/155 (16%), Positives = 47/155 (30%), Gaps = 18/155 (11%)
Query: 27 GAAKSVDPGIELVKSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDL 86
A++V L + V V++G G G + AR L + V
Sbjct: 35 SVAQAVCRQFPLRGKTETEKGKHVFVIAGPGNNGGDGL--VCARHLKLFGYNPVV----- 87
Query: 87 DICGPSMPRMMGLLNEQVHQSASGWSPVFLEENLSVMSIGFLLNSPDDAVI--WRGPKKN 144
P + VHQ PV ++ + + +L ++ G
Sbjct: 88 --FYPKRSERTEFYKQLVHQLNFFKVPVLSQDEGNWLE--YLKPEKTLCIVDAIFGFSFK 143
Query: 145 TMIRQFLSEV-----DWGNGLEYLLIDTPPGTSDE 174
+R+ + N + + +D P G +
Sbjct: 144 PPMREPFKGIVEELCKVQNIIPIVSVDVPTGWDVD 178
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 26.1 bits (56), Expect = 3.8
Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 49 KVLVLSGKGGVGKSTFTN 66
++ VL G GKS+ +
Sbjct: 7 RLGVL-GDARSGKSSLIH 23
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 26.2 bits (56), Expect = 3.8
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
++L++ G GK+T L
Sbjct: 2 RILMV-GLDAAGKTTILYKLKL 22
>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 154
Score = 26.2 bits (57), Expect = 3.8
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSA 108
+VLV G + S ++ + ++ + + +LD+ P M + G+L E +
Sbjct: 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT---PMMGVLDGVLMELQDCAL 61
Query: 109 SGWSPVF 115
V
Sbjct: 62 PLLKDVI 68
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 26.2 bits (57), Expect = 4.0
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 50 VLVLSGKGGVGKSTFTNLLARVLAKSNES 78
++ L+G G GK+T T + + +
Sbjct: 35 MVYLNGDLGAGKTTLTRGMLQGIGHQGNV 63
>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant
arborvitae (Thuja plicata) [TaxId: 3316]}
Length = 312
Score = 26.7 bits (57), Expect = 4.0
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 5/57 (8%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQ 103
K +VL++ G G +GK + V + +M+ +
Sbjct: 3 KSRVLIVGGTGYIGKR-----IVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQL 54
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.1 bits (56), Expect = 4.0
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 47 KHKVLVLSGKGGVGKSTFTN 66
++K++VL G GGVGKS T
Sbjct: 3 EYKLVVL-GSGGVGKSALTV 21
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia
coli [TaxId: 562]}
Length = 305
Score = 26.6 bits (57), Expect = 4.1
Identities = 7/45 (15%), Positives = 12/45 (26%), Gaps = 3/45 (6%)
Query: 150 FLSEVDWGNGLEYLLIDTPPGTSDEHLSLVQYLKGLPDIGAIVVT 194
L + L D GT L+ + I ++
Sbjct: 22 ILLNLQHPTQSGLWLFDCGEGTQ---HQLLHTAFNPGKLDKIFIS 63
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 26.2 bits (56), Expect = 4.1
Identities = 7/18 (38%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 49 KVLVLSGKGGVGKSTFTN 66
K+++L G+ VGKS+
Sbjct: 5 KLVLL-GEAAVGKSSIVL 21
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 26.0 bits (57), Expect = 4.1
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 46 VKHKVLVLSGKGGVGKSTFTNLL----ARVLAKSNESVDVGVLDLD-ICGPSMPRMMGLL 100
+ ++++G GVGKS L R++A ++ VDV D I G + P + LL
Sbjct: 12 IYGLGVLITGDSGVGKSETALELVQRGHRLIA--DDRVDVYQQDEQTIVGAAPPILSHLL 69
Query: 101 N 101
Sbjct: 70 E 70
>g2mev.1 b.121.4.1 (4:,2:) Mengo encephalomyocarditis virus coat
proteins {Mengovirus [TaxId: 12107]}
Length = 307
Score = 26.4 bits (58), Expect = 4.2
Identities = 6/23 (26%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 250 MCAELSVPFLGSVPIDPLVTRHC 272
+L VP++ P T+H
Sbjct: 240 TTVDLEVPYVNIAPTSS-WTQHA 261
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 26.1 bits (56), Expect = 4.2
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 44 SNVKHKVLVLSGKGGVGKSTFTN 66
SN + ++L+L G G GK+T
Sbjct: 14 SNKELRILIL-GLDGAGKTTILY 35
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId:
5076]}
Length = 208
Score = 26.3 bits (57), Expect = 4.3
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 40 KSHLSNVKHKVLVLSGKGGVGKSTFTNLLARVLAKSN 76
++ L N + + L+G GKST L L +
Sbjct: 16 RTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDR 52
>d1k82a3 g.39.1.8 (A:225-268) DNA repair protein MutM (Fpg)
{Escherichia coli [TaxId: 562]}
Length = 44
Score = 23.8 bits (52), Expect = 4.3
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 206 KEIDFCRKVNIPIIG-VVENMATFVCPKCTK 235
++ + CR PI+ ATF C +C K
Sbjct: 14 RKGEPCRVCGTPIVATKHAQRATFYCRQCQK 44
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 26.1 bits (56), Expect = 4.3
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 47 KHKVLVLSGKGGVGKSTFTNLLA 69
+ ++L+L G GK+T LA
Sbjct: 16 EVRILLL-GLDNAGKTTLLKQLA 37
>d1ee8a3 g.39.1.8 (A:211-266) DNA repair protein MutM (Fpg) {Thermus
thermophilus [TaxId: 274]}
Length = 56
Score = 24.0 bits (52), Expect = 4.8
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 205 RKEIDFCRKVNIPIIGVVE-NMATFVCPKCTK 235
+E C P+ V T CP C
Sbjct: 22 GREGLPCPACGRPVERRVVAGRGTHFCPTCQG 53
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 26.1 bits (56), Expect = 4.9
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
K +V+ G G VGK+ A
Sbjct: 11 KCVVV-GDGAVGKTCLLMSYAN 31
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 25.7 bits (56), Expect = 5.9
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 43 LSNV-----KHKVLVLSGKGGVGKSTFTNLLARVLAKS 75
L + ++L L G G GKST +A + +
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK 52
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 25.7 bits (55), Expect = 5.9
Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 49 KVLVLSGKGGVGKSTFTN 66
K +V+ G G VGK+
Sbjct: 5 KCVVV-GDGAVGKTCLLI 21
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 25.8 bits (55), Expect = 6.0
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 52 VLSGKGGVGKSTFTNLL 68
+ +G+ VGKST L
Sbjct: 4 IFAGRSNVGKSTLIYRL 20
>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide
D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli
[TaxId: 562]}
Length = 214
Score = 25.8 bits (55), Expect = 6.4
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 57 GGVGKSTFTNLLARVLAKSNESVDVG 82
G GK++ + A +L++ ++
Sbjct: 9 GSSGKTSVKEMTAAILSQCGNTLYTA 34
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 25.5 bits (54), Expect = 6.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 52 VLSGKGGVGKSTFTNLLAR 70
++ G+ VGKST N L +
Sbjct: 4 LIVGRPNVGKSTLFNKLVK 22
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 25.4 bits (54), Expect = 6.7
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 49 KVLVLSGKGGVGKSTFTNLLAR 70
K +V+ G G VGK+
Sbjct: 7 KCVVV-GDGAVGKTCLLISYTT 27
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 25.2 bits (54), Expect = 7.1
Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 7/103 (6%)
Query: 51 LVLSGKGGVGKSTFTNLLARVLAKSNESVDVGVLDLDICGPSMPRMMGLLNEQVHQSASG 110
++L G G GK T LA L + + L + +
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKL-------GIPQISTGELFRRNIEEGTKLGVEAKRYLDA 55
Query: 111 WSPVFLEENLSVMSIGFLLNSPDDAVIWRGPKKNTMIRQFLSE 153
V + ++ + I G ++ + L E
Sbjct: 56 GDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHE 98
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 25.7 bits (55), Expect = 7.4
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 47 KHKVLVLSGKGGVGKST 63
K ++ ++ G GK+
Sbjct: 8 KKRLTIMDLHPGAGKTK 24
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus
[TaxId: 274]}
Length = 191
Score = 25.3 bits (54), Expect = 7.7
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 47 KHKVLV-LSGKGGVGKSTFTNLLA 69
KH +++ ++G G GKST LL
Sbjct: 1 KHPIIIGITGNIGSGKSTVAALLR 24
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 25.1 bits (53), Expect = 8.6
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 52 VLSGKGGVGKSTFTNLLAR 70
+ GK VGKST N L
Sbjct: 9 AIVGKPNVGKSTLLNNLLG 27
>g1bev.1 b.121.4.1 (4:,2:) Bovine enterovirus coat proteins {Bovine
enterovirus, VG-5-27 [TaxId: 12064]}
Length = 284
Score = 25.2 bits (55), Expect = 9.2
Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 250 MCAELSVPFLGSVPIDPLVTRHC 272
A L +P++ ++P+D RH
Sbjct: 217 NSATLILPYVNAIPMDS-AIRHS 238
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.404
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,066,159
Number of extensions: 49730
Number of successful extensions: 388
Number of sequences better than 10.0: 1
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 191
Length of query: 294
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 209
Effective length of database: 1,240,546
Effective search space: 259274114
Effective search space used: 259274114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)