BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11348
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OMD|A Chain A, Structure Of Oncomodulin Refined At 1.85 Angstroms
Resolution. An Example Of Extensive Molecular
Aggregation Via Ca2+
pdb|1RRO|A Chain A, Refinement Of Recombinant Oncomodulin At 1.30 Angstroms
Resolution
pdb|2NLN|A Chain A, Solution Structure Of Calcium-Free Rat Beta-Parvalbumin
Length = 108
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 12/89 (13%)
Query: 49 TGTLTPVFIERVFQECL---TFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQG 105
T L+ I QEC TFE Q ++T S +K ++ +FRF+D G
Sbjct: 3 TDILSAEDIAAALQECQDPDTFEPQKFFQT------SGLSKMSASQVKDIFRFIDNDQSG 56
Query: 106 YLDTFTLFYF---FKAISKQITESEQEPI 131
YLD L YF F++ ++++TESE + +
Sbjct: 57 YLDGDELKYFLQKFQSDARELTESETKSL 85
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 16 FSATSALRVYGQYLHLDKNHNGVLSKEELAAYGTGTLTPVFIERVFQECLTFET----QM 71
F A R+ ++ LD +++G LS EE + P+ ++RV F+T ++
Sbjct: 15 FDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPL-VQRVID---IFDTDGNGEV 70
Query: 72 DYKTYLDFVLSLENKHEP-QALQYLFRFLDIKHQGYLDTFTLFYFFKAI 119
D+K +++ V K + Q L++ FR D+ GY+ LF K +
Sbjct: 71 DFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMM 119
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 16 FSATSALRVYGQYLHLDKNHNGVLSKEELAAYGTGTLTPVFIERVFQECLTFET----QM 71
F A R+ ++ LD +++G LS EE + P+ ++RV F+T ++
Sbjct: 14 FDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPL-VQRVID---IFDTDGNGEV 69
Query: 72 DYKTYLDFVLSLENKHEP-QALQYLFRFLDIKHQGYLDTFTLFYFFKAI 119
D+K +++ V K + Q L++ FR D+ GY+ LF K +
Sbjct: 70 DFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMM 118
>pdb|1TTX|A Chain A, Solution Stucture Of Human Beta Parvalbumin (Oncomodulin)
Refined With A Paramagnetism Based Strategy
Length = 109
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 12/89 (13%)
Query: 49 TGTLTPVFIERVFQECL---TFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQG 105
T L+ I QEC TFE Q ++T S +K ++ +FRF+D G
Sbjct: 4 TDVLSADDIAAALQECRDPDTFEPQKFFQT------SGLSKMSANQVKDVFRFIDNDQSG 57
Query: 106 YLDTFTLFYF---FKAISKQITESEQEPI 131
YLD L +F F++ ++++TESE + +
Sbjct: 58 YLDEEELKFFLQKFESGARELTESETKSL 86
>pdb|2CT9|A Chain A, The Crystal Structure Of Calcineurin B Homologous Proein
1 (Chp1)
pdb|2CT9|B Chain B, The Crystal Structure Of Calcineurin B Homologous Proein
1 (Chp1)
Length = 208
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 1 LRDEGLSVDRLEKNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAYGTGTLTPV---FI 57
LRDE L + E FS + R+Y ++ LDK NG LS+E+ + P+ I
Sbjct: 9 LRDEELEEIKKE-TGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRII 67
Query: 58 ERVFQECLTFETQMDYKTYL 77
F E E Q++++ ++
Sbjct: 68 NAFFSEG---EDQVNFRGFM 84
>pdb|3LL8|B Chain B, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
pdb|3LL8|D Chain D, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
Length = 155
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 18 ATSALRVYGQYLHLDKNHNGVLSKEELAAYGTGTLTPVFIERVFQECLTFET----QMDY 73
A R+ ++ LD +++G LS EE + P+ ++RV F+T ++D+
Sbjct: 2 ADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPL-VQRVID---IFDTDGNGEVDF 57
Query: 74 KTYLDFVLSLENKHEP-QALQYLFRFLDIKHQGYLDTFTLFYFFKAI 119
K +++ V K + Q L++ FR D+ GY+ LF K +
Sbjct: 58 KEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMM 104
>pdb|2P6B|B Chain B, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
pdb|2P6B|D Chain D, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
Length = 156
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 18 ATSALRVYGQYLHLDKNHNGVLSKEELAAYGTGTLTPVFIERVFQECLTFET----QMDY 73
A R+ ++ LD +++G LS EE + P+ ++RV F+T ++D+
Sbjct: 3 ADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPL-VQRVID---IFDTDGNGEVDF 58
Query: 74 KTYLDFVLSLENKHEP-QALQYLFRFLDIKHQGYLDTFTLFYFFKAI 119
K +++ V K + Q L++ FR D+ GY+ LF K +
Sbjct: 59 KEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMM 105
>pdb|2E30|A Chain A, Solution Structure Of The Cytoplasmic Region Of Na+H+
Exchanger 1 Complexed With Essential Cofactor
Calcineurin B Homologous Protein 1
Length = 195
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 1 LRDEGLSVDRLEKNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAYGTGTLTPV---FI 57
LRDE L + E FS + R+Y ++ LDK NG LS+E+ + P+ I
Sbjct: 9 LRDEELEEIKKE-TGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRII 67
Query: 58 ERVFQECLTFETQMDYKTYL 77
F E E Q++++ ++
Sbjct: 68 NAFFPEG---EDQVNFRGFM 84
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 90 QALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPI 131
+ L LFR D GY+D L F+A + +T+ E E +
Sbjct: 93 EELAELFRIFDRNADGYIDAEELAEIFRASGEHVTDEEIESL 134
>pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue (1-47) Fragment Of
Troponin I
Length = 159
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 90 QALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPI 131
+ L FR D GY+D L F+A + +T+ E E +
Sbjct: 93 EELAECFRIFDRNADGYIDAEELAEIFRASGEHVTDEEIESL 134
>pdb|1EJ3|A Chain A, Crystal Structure Of Aequorin
pdb|1EJ3|B Chain B, Crystal Structure Of Aequorin
pdb|1UHI|A Chain A, Crystal Structure Of I-aequorin
pdb|1UHI|B Chain B, Crystal Structure Of I-aequorin
pdb|1UHK|A Chain A, Crystal Structure Of N-Aequorin
pdb|1UHK|B Chain B, Crystal Structure Of N-Aequorin
Length = 191
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 6 LSVDRLEKNWFSATSALRVYGQYLH--LDKNHNGVLSKEELAAY 47
L+ D LEK + + +R++G L +DK+ NG ++ +E AY
Sbjct: 91 LATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAY 134
>pdb|1UHH|A Chain A, Crystal Structure Of Cp-Aequorin
pdb|1UHH|B Chain B, Crystal Structure Of Cp-Aequorin
pdb|1UHJ|A Chain A, Crystal Structure Of Br-Aequorin
pdb|1UHJ|B Chain B, Crystal Structure Of Br-Aequorin
Length = 191
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 6 LSVDRLEKNWFSATSALRVYGQYLH--LDKNHNGVLSKEELAAY 47
L+ D LEK + + +R++G L +DK+ NG ++ +E AY
Sbjct: 91 LATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAY 134
>pdb|1FI5|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin
C Bound To The N Terminal Domain Of Cardiac Troponin I.
pdb|1SBJ|A Chain A, Nmr Structure Of The Mg2+-Loaded C Terminal Domain Of
Cardiac Troponin C Bound To The N Terminal Domain Of
Cardiac Troponin I
pdb|1SCV|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin
C Bound To The N Terminal Domain Of Cardiac Troponin I
Length = 81
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 89 PQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPI 131
+ L LFR D GY+D L +A + ITE + E +
Sbjct: 14 EEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEEL 56
>pdb|3CTN|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 30
Structures
Length = 76
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 89 PQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPI 131
+ L LFR D GY+D L +A + ITE + E +
Sbjct: 9 EEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEEL 51
>pdb|2KYC|A Chain A, Solution Structure Of Ca-Free Chicken Parvalbumin 3 (Cpv3)
pdb|2KYF|A Chain A, Solution Structure Of Calcium-Bound Cpv3
Length = 108
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 49 TGTLTPVFIERVFQECLTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLD 108
T L+P I ++C ++ + F +S +K L+ +FR LD G+++
Sbjct: 3 TDILSPSDIAAALRDCQAPDS---FSPKKFFQISGMSKKSSSQLKEIFRILDNDQSGFIE 59
Query: 109 TFTLFYF---FKAISKQITESE 127
L YF F++ ++ +T SE
Sbjct: 60 EDELKYFLQRFESGARVLTASE 81
>pdb|2JT3|A Chain A, Solution Structure Of F153w Cardiac Troponin C
Length = 161
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 90 QALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPI 131
+ L LFR D GY+D L +A + ITE + E +
Sbjct: 95 EELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEEL 136
>pdb|2KDH|A Chain A, The Solution Structure Of Human Cardiac Troponin C In
Complex With The Green Tea Polyphenol; (-)-
Epigallocatechin-3-Gallate
pdb|2L98|A Chain A, Structure Of Trans-Resveratrol In Complex With The Cardiac
Regulatory Protein Troponin C
Length = 72
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 89 PQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPI 131
+ L LFR D GY+D L +A + ITE + E +
Sbjct: 5 EEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEEL 47
>pdb|2JT8|A Chain A, Solution Structure Of The F153-To-5-Flurotryptophan Mutant
Of Human Cardiac Troponin C
Length = 161
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 90 QALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPI 131
+ L LFR D GY+D L +A + ITE + E +
Sbjct: 95 EELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEEL 136
>pdb|1OZS|A Chain A, C-Domain Of Human Cardiac Troponin C In Complex With The
Inhibitory Region Of Human Cardiac Troponin I
Length = 73
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 89 PQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPI 131
+ L LFR D GY+D L +A + ITE + E +
Sbjct: 6 EEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEEL 48
>pdb|1IH0|A Chain A, Structure Of The C-Domain Of Human Cardiac Troponin C In
Complex With Ca2+ Sensitizer Emd 57033
Length = 71
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 89 PQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPI 131
+ L LFR D GY+D L +A + ITE + E +
Sbjct: 4 EEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEEL 46
>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C
In The Troponin C-Troponin I Complex
Length = 161
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 90 QALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPI 131
+ L LFR D GY+D L +A + ITE + E +
Sbjct: 95 EELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEEL 136
>pdb|2JTZ|A Chain A, Solution Structure And Chemical Shift Assignments Of The
F104-To-5-Flurotryptophan Mutant Of Cardiac Troponin C
Length = 161
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 90 QALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPI 131
+ L LFR D GY+D L +A + ITE + E +
Sbjct: 95 EELSDLFRMXDKNADGYIDLDELKIMLQATGETITEDDIEEL 136
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
pdb|1J1D|A Chain A, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|D Chain D, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|A Chain A, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|D Chain D, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 161
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 90 QALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPI 131
+ L LFR D GY+D L +A + ITE + E +
Sbjct: 95 EELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEEL 136
>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 90 QALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPI 131
+ L LFR D GY+D L +A + ITE + E +
Sbjct: 95 EELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEEL 136
>pdb|2W8D|A Chain A, Distinct And Essential Morphogenic Functions For Wall- And
Lipo-Teichoic Acids In Bacillus Subtilis
pdb|2W8D|B Chain B, Distinct And Essential Morphogenic Functions For Wall- And
Lipo-Teichoic Acids In Bacillus Subtilis
Length = 436
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 11 LEKNWFSATSALRVYGQYLHLDKNHN----GVLSKEELAAYGTGTL--TPVFI 57
L+K+ S + YG + + +NHN VL K+E+ Y L P+FI
Sbjct: 242 LKKDGLYDKSIIVXYGDHYGISENHNKAXAKVLGKDEITDYDNAQLQRVPLFI 294
>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant
Length = 334
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 112 LFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDL 157
L Y K I K+ T+S + ++ ED++ E+ + + + P+ ITL ++
Sbjct: 37 LQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEV 82
>pdb|3RYT|A Chain A, The Plexin A1 Intracellular Region In Complex With Rac1
pdb|3RYT|B Chain B, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 626
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 30 HLDKNHNGVLSKEELAAYGTGTLTPVFIERVFQECLTFETQMDYKTYLDFVLSLENKHEP 89
HL KNH+ + +E G+ ++ +++ R+ T + +D F + P
Sbjct: 385 HLVKNHDHLDQRE--GDRGSKMVSEIYLTRLLATKGTLQKFVDDLFETIFSTAHRGSALP 442
Query: 90 QALQYLFRFLD---IKHQ 104
A++Y+F FLD KHQ
Sbjct: 443 LAIKYMFDFLDEQADKHQ 460
>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex
Length = 334
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 112 LFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDL 157
L Y K I K+ T+S + ++ ED++ E+ + + + P+ ITL ++
Sbjct: 37 LQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEV 82
>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304
Length = 326
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 112 LFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDL 157
L Y K I K+ T+S + ++ ED++ E+ + + + P+ ITL ++
Sbjct: 37 LQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEV 82
>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312
pdb|2XZS|B Chain B, Death Associated Protein Kinase 1 Residues 1-312
Length = 312
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 112 LFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDL 157
L Y K I K+ T+S + ++ ED++ E+ + + + P+ ITL ++
Sbjct: 37 LQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEV 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,821,015
Number of Sequences: 62578
Number of extensions: 186056
Number of successful extensions: 458
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 52
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)