Query psy11348
Match_columns 160
No_of_seqs 106 out of 1055
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 16:05:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 1.4E-28 3.1E-33 177.7 14.0 141 10-159 8-152 (160)
2 KOG2562|consensus 100.0 2.4E-28 5.1E-33 198.3 11.4 152 9-160 265-421 (493)
3 KOG0027|consensus 99.9 3.4E-23 7.4E-28 149.8 12.9 135 16-159 2-145 (151)
4 KOG0044|consensus 99.9 1.3E-22 2.7E-27 151.2 13.5 154 4-159 11-171 (193)
5 KOG0034|consensus 99.9 7.9E-23 1.7E-27 152.0 12.3 151 4-159 12-171 (187)
6 KOG0028|consensus 99.9 1E-20 2.2E-25 135.0 11.8 139 12-159 23-166 (172)
7 PTZ00184 calmodulin; Provision 99.8 1.3E-19 2.8E-24 129.0 12.9 137 14-159 3-144 (149)
8 PTZ00183 centrin; Provisional 99.8 2E-19 4.3E-24 129.6 12.9 138 14-160 9-151 (158)
9 KOG0031|consensus 99.8 1.8E-18 3.9E-23 122.8 12.9 133 15-159 25-161 (171)
10 KOG0030|consensus 99.8 6.7E-18 1.5E-22 118.1 11.4 136 14-159 3-147 (152)
11 KOG0038|consensus 99.7 3.6E-17 7.8E-22 115.5 9.6 152 3-159 9-173 (189)
12 KOG0036|consensus 99.6 9.9E-15 2.1E-19 118.0 12.2 133 13-159 5-142 (463)
13 KOG0037|consensus 99.5 2.1E-13 4.5E-18 102.3 10.4 126 20-160 55-185 (221)
14 PLN02964 phosphatidylserine de 99.5 3.8E-13 8.3E-18 115.9 11.9 109 9-118 128-243 (644)
15 PF13499 EF-hand_7: EF-hand do 99.3 4.6E-12 9.9E-17 78.8 4.3 64 91-159 1-64 (66)
16 KOG4223|consensus 99.3 6E-11 1.3E-15 93.6 10.4 137 13-158 154-300 (325)
17 cd05022 S-100A13 S-100A13: S-1 99.2 4.6E-11 1E-15 79.0 5.8 62 90-159 8-71 (89)
18 PTZ00183 centrin; Provisional 99.1 7.4E-10 1.6E-14 79.4 10.8 95 23-117 54-153 (158)
19 smart00027 EH Eps15 homology d 99.1 5.1E-10 1.1E-14 74.9 7.1 68 15-82 3-72 (96)
20 KOG0037|consensus 99.0 1.2E-09 2.6E-14 82.1 8.4 84 21-110 123-210 (221)
21 cd05027 S-100B S-100B: S-100B 99.0 3.7E-10 8E-15 74.6 4.6 66 90-159 8-75 (88)
22 PF13499 EF-hand_7: EF-hand do 99.0 1E-09 2.2E-14 68.1 5.1 57 23-79 1-65 (66)
23 cd05026 S-100Z S-100Z: S-100Z 99.0 1.8E-09 3.8E-14 72.0 6.5 64 91-159 11-77 (93)
24 cd05025 S-100A1 S-100A1: S-100 99.0 1.7E-09 3.8E-14 71.7 6.3 65 90-159 9-76 (92)
25 PTZ00184 calmodulin; Provision 99.0 1.1E-08 2.4E-13 72.4 10.5 94 23-116 48-146 (149)
26 KOG0027|consensus 99.0 7E-09 1.5E-13 74.8 9.3 95 22-116 44-147 (151)
27 KOG0044|consensus 98.9 7.7E-09 1.7E-13 77.4 9.5 94 25-118 67-175 (193)
28 cd05022 S-100A13 S-100A13: S-1 98.9 4.6E-09 1E-13 69.4 6.5 64 19-82 5-75 (89)
29 cd00252 SPARC_EC SPARC_EC; ext 98.9 2.8E-09 6.2E-14 73.8 5.7 58 90-160 48-105 (116)
30 cd05026 S-100Z S-100Z: S-100Z 98.9 7.1E-09 1.5E-13 69.1 7.4 65 19-83 7-82 (93)
31 KOG4223|consensus 98.9 5.4E-09 1.2E-13 82.7 7.4 132 20-159 75-224 (325)
32 cd05031 S-100A10_like S-100A10 98.9 7.8E-09 1.7E-13 68.9 6.9 65 90-159 8-75 (94)
33 COG5126 FRQ1 Ca2+-binding prot 98.8 4.5E-08 9.8E-13 71.1 10.2 92 25-117 59-155 (160)
34 cd05027 S-100B S-100B: S-100B 98.8 2E-08 4.3E-13 66.3 7.2 64 19-82 5-79 (88)
35 cd05029 S-100A6 S-100A6: S-100 98.8 2.4E-08 5.1E-13 65.9 7.2 65 19-83 7-80 (88)
36 cd05025 S-100A1 S-100A1: S-100 98.8 1.6E-08 3.4E-13 67.1 6.3 64 20-83 7-81 (92)
37 cd00213 S-100 S-100: S-100 dom 98.8 2.6E-08 5.7E-13 65.3 6.9 66 18-83 4-80 (88)
38 cd00052 EH Eps15 homology doma 98.8 1.9E-08 4.1E-13 62.1 5.6 58 25-82 2-61 (67)
39 cd05031 S-100A10_like S-100A10 98.8 2.2E-08 4.8E-13 66.6 6.1 63 20-82 6-79 (94)
40 cd00213 S-100 S-100: S-100 dom 98.8 2.3E-08 4.9E-13 65.6 6.0 65 90-159 8-75 (88)
41 cd05023 S-100A11 S-100A11: S-1 98.8 3.9E-08 8.4E-13 65.0 6.9 66 90-159 9-76 (89)
42 cd00052 EH Eps15 homology doma 98.8 1.1E-08 2.5E-13 63.1 4.1 56 93-159 2-57 (67)
43 cd05029 S-100A6 S-100A6: S-100 98.8 8.9E-09 1.9E-13 67.9 3.7 63 91-159 11-75 (88)
44 cd00252 SPARC_EC SPARC_EC; ext 98.7 6E-08 1.3E-12 67.2 7.0 63 17-80 43-106 (116)
45 smart00027 EH Eps15 homology d 98.7 3.3E-08 7.2E-13 66.0 5.0 59 90-159 10-68 (96)
46 KOG0377|consensus 98.7 1.8E-07 3.8E-12 77.1 9.9 131 22-159 464-611 (631)
47 cd05023 S-100A11 S-100A11: S-1 98.6 9.8E-08 2.1E-12 63.1 6.3 65 19-83 6-81 (89)
48 KOG0034|consensus 98.6 1E-06 2.3E-11 65.8 11.2 107 12-118 47-175 (187)
49 cd00051 EFh EF-hand, calcium b 98.6 7.2E-08 1.6E-12 57.5 4.1 60 92-160 2-61 (63)
50 PF00036 EF-hand_1: EF hand; 98.6 7E-08 1.5E-12 50.5 3.2 27 92-118 2-28 (29)
51 PF13833 EF-hand_8: EF-hand do 98.5 5.2E-07 1.1E-11 53.7 6.4 50 68-117 2-52 (54)
52 PLN02964 phosphatidylserine de 98.5 6.2E-07 1.3E-11 78.0 8.6 117 27-159 112-239 (644)
53 KOG4666|consensus 98.4 2.8E-07 6E-12 73.3 4.9 114 35-159 240-355 (412)
54 PF13405 EF-hand_6: EF-hand do 98.4 2.4E-07 5.3E-12 49.0 2.8 27 91-117 1-27 (31)
55 KOG0040|consensus 98.4 2.9E-06 6.3E-11 78.2 11.2 134 13-160 2244-2395(2399)
56 KOG0028|consensus 98.4 5.8E-06 1.3E-10 59.7 9.8 94 24-117 71-169 (172)
57 PF14658 EF-hand_9: EF-hand do 98.4 4.3E-07 9.3E-12 56.3 3.5 57 95-159 3-60 (66)
58 cd00051 EFh EF-hand, calcium b 98.3 3.4E-06 7.4E-11 50.0 6.8 56 24-79 2-61 (63)
59 KOG0041|consensus 98.3 1.1E-06 2.3E-11 65.7 5.3 60 90-158 99-158 (244)
60 PF13833 EF-hand_8: EF-hand do 98.3 1.1E-06 2.3E-11 52.3 4.4 47 35-81 1-52 (54)
61 cd05030 calgranulins Calgranul 98.3 2.7E-06 6E-11 55.9 6.6 64 91-159 9-75 (88)
62 KOG2643|consensus 98.3 5.1E-06 1.1E-10 68.4 8.9 122 25-159 236-380 (489)
63 KOG0041|consensus 98.3 4.9E-06 1.1E-10 62.2 7.9 108 7-114 84-199 (244)
64 cd05030 calgranulins Calgranul 98.3 4E-06 8.7E-11 55.2 6.5 64 19-82 5-79 (88)
65 PF13202 EF-hand_5: EF hand; P 98.2 2.6E-06 5.5E-11 42.9 3.0 25 92-116 1-25 (25)
66 KOG0036|consensus 98.2 1.2E-05 2.7E-10 65.9 8.5 92 23-116 52-144 (463)
67 KOG2643|consensus 98.1 1.5E-05 3.2E-10 65.8 8.4 135 13-159 300-449 (489)
68 PF14658 EF-hand_9: EF-hand do 98.1 7.8E-06 1.7E-10 50.7 4.9 57 26-82 2-64 (66)
69 PF00036 EF-hand_1: EF hand; 98.0 3E-06 6.6E-11 44.2 1.7 24 24-47 2-25 (29)
70 KOG4251|consensus 97.9 1.6E-05 3.5E-10 61.4 4.7 88 71-158 216-304 (362)
71 KOG0030|consensus 97.9 4.2E-05 9.2E-10 54.1 5.5 56 26-81 92-150 (152)
72 PF13202 EF-hand_5: EF hand; P 97.8 1E-05 2.2E-10 40.7 1.6 24 24-47 1-24 (25)
73 PRK12309 transaldolase/EF-hand 97.8 3.2E-05 6.9E-10 64.0 5.3 49 89-159 333-381 (391)
74 PF12763 EF-hand_4: Cytoskelet 97.8 2.8E-05 6.1E-10 52.8 4.0 65 16-81 4-70 (104)
75 KOG0031|consensus 97.8 7.6E-05 1.6E-09 53.7 6.3 31 90-120 32-62 (171)
76 cd05024 S-100A10 S-100A10: A s 97.8 0.00013 2.8E-09 48.2 7.0 64 91-159 9-72 (91)
77 PF10591 SPARC_Ca_bdg: Secrete 97.8 7.8E-06 1.7E-10 56.3 1.2 61 89-160 53-113 (113)
78 PF13405 EF-hand_6: EF-hand do 97.8 1.2E-05 2.6E-10 42.4 1.6 26 23-48 1-26 (31)
79 cd05024 S-100A10 S-100A10: A s 97.7 0.00026 5.6E-09 46.8 7.6 62 20-82 6-76 (91)
80 KOG0377|consensus 97.7 8.8E-05 1.9E-09 61.6 6.2 60 23-82 548-615 (631)
81 KOG0751|consensus 97.7 0.00033 7.2E-09 58.9 9.1 133 11-157 86-238 (694)
82 PRK12309 transaldolase/EF-hand 97.6 0.00033 7.3E-09 58.0 7.9 59 49-120 328-387 (391)
83 KOG0751|consensus 97.6 0.00048 1E-08 58.0 8.7 102 16-119 30-137 (694)
84 KOG0046|consensus 97.5 0.00036 7.7E-09 59.0 6.4 76 8-84 5-87 (627)
85 PF10591 SPARC_Ca_bdg: Secrete 97.4 0.0001 2.2E-09 50.8 2.0 56 22-77 54-111 (113)
86 PF14788 EF-hand_10: EF hand; 97.3 0.00097 2.1E-08 39.2 5.6 49 71-119 2-50 (51)
87 smart00054 EFh EF-hand, calciu 97.2 0.00045 9.8E-09 34.1 2.8 27 92-118 2-28 (29)
88 KOG4251|consensus 97.1 0.0011 2.3E-08 51.4 5.3 62 90-158 101-163 (362)
89 KOG4065|consensus 97.1 0.0013 2.9E-08 45.2 5.2 71 88-159 64-141 (144)
90 KOG1707|consensus 96.9 0.0092 2E-07 51.4 9.7 109 11-119 184-344 (625)
91 KOG0169|consensus 96.8 0.0078 1.7E-07 53.1 8.9 132 17-159 131-270 (746)
92 PF12763 EF-hand_4: Cytoskelet 96.8 0.018 3.9E-07 39.1 8.8 68 55-124 10-77 (104)
93 KOG2562|consensus 96.8 0.0075 1.6E-07 50.5 8.1 121 26-158 178-338 (493)
94 KOG0046|consensus 96.7 0.0027 5.8E-08 53.9 4.8 63 90-159 19-81 (627)
95 PF14788 EF-hand_10: EF hand; 96.2 0.011 2.3E-07 34.8 3.9 44 39-82 2-49 (51)
96 KOG0040|consensus 96.0 0.013 2.8E-07 55.3 5.5 65 91-159 2254-2320(2399)
97 smart00054 EFh EF-hand, calciu 95.8 0.0066 1.4E-07 29.6 1.7 24 24-47 2-25 (29)
98 KOG3555|consensus 95.8 0.0097 2.1E-07 48.2 3.3 58 90-160 250-307 (434)
99 PF09279 EF-hand_like: Phospho 95.8 0.025 5.4E-07 36.3 4.7 60 24-84 2-71 (83)
100 KOG0038|consensus 95.8 0.015 3.2E-07 41.8 3.8 93 22-117 74-176 (189)
101 KOG4666|consensus 95.7 0.047 1E-06 44.1 7.0 95 22-117 259-358 (412)
102 KOG4065|consensus 95.6 0.041 8.9E-07 38.0 5.5 64 13-78 60-141 (144)
103 KOG3866|consensus 95.6 0.016 3.5E-07 46.4 3.9 68 92-159 246-320 (442)
104 KOG0035|consensus 95.5 0.055 1.2E-06 48.9 7.3 107 7-114 732-848 (890)
105 PF09279 EF-hand_like: Phospho 95.2 0.072 1.6E-06 34.1 5.5 62 56-117 1-68 (83)
106 PF05042 Caleosin: Caleosin re 94.8 0.31 6.7E-06 36.0 8.3 63 54-117 95-165 (174)
107 PF08726 EFhand_Ca_insen: Ca2+ 94.7 0.04 8.7E-07 34.5 2.9 55 88-159 4-65 (69)
108 KOG0039|consensus 94.5 0.11 2.3E-06 46.0 6.2 83 68-158 2-84 (646)
109 PF08414 NADPH_Ox: Respiratory 92.6 0.14 3.1E-06 34.2 2.9 56 21-78 29-88 (100)
110 KOG3555|consensus 92.6 0.14 3.1E-06 41.6 3.5 90 23-116 212-308 (434)
111 KOG0042|consensus 92.5 0.28 6.1E-06 42.5 5.3 79 10-88 581-663 (680)
112 KOG4578|consensus 92.4 0.05 1.1E-06 43.9 0.7 62 91-160 334-395 (421)
113 PF09069 EF-hand_3: EF-hand; 91.8 1.3 2.7E-05 29.2 6.7 67 90-160 3-72 (90)
114 KOG4347|consensus 91.0 0.28 6.2E-06 42.9 3.8 102 10-112 492-612 (671)
115 PF08726 EFhand_Ca_insen: Ca2+ 90.1 0.33 7.2E-06 30.4 2.6 51 23-78 7-65 (69)
116 KOG1955|consensus 89.7 0.93 2E-05 38.8 5.7 67 16-82 225-293 (737)
117 PLN02952 phosphoinositide phos 88.5 4 8.6E-05 36.0 8.9 51 67-118 13-65 (599)
118 KOG4578|consensus 88.3 0.3 6.5E-06 39.6 1.8 52 67-118 346-398 (421)
119 PLN02952 phosphoinositide phos 87.7 3.7 8.1E-05 36.2 8.3 83 35-117 13-109 (599)
120 KOG1029|consensus 86.3 0.96 2.1E-05 40.7 3.9 62 20-81 193-256 (1118)
121 cd07313 terB_like_2 tellurium 85.3 3.9 8.4E-05 26.9 5.8 79 35-115 12-97 (104)
122 PF04876 Tenui_NCP: Tenuivirus 83.1 7.5 0.00016 28.1 6.5 79 53-139 81-160 (175)
123 KOG2243|consensus 82.8 1.7 3.7E-05 41.9 4.0 53 26-78 4061-4116(5019)
124 PF00404 Dockerin_1: Dockerin 81.8 1.6 3.5E-05 20.7 2.0 16 100-115 1-16 (21)
125 PF05517 p25-alpha: p25-alpha 81.0 5.2 0.00011 28.8 5.4 61 22-82 2-69 (154)
126 PF09069 EF-hand_3: EF-hand; 81.0 7.9 0.00017 25.5 5.7 58 23-82 4-75 (90)
127 KOG0998|consensus 80.7 2 4.4E-05 39.4 3.7 131 16-158 123-340 (847)
128 KOG3866|consensus 78.8 2.7 5.8E-05 34.1 3.4 92 25-122 247-358 (442)
129 KOG0042|consensus 78.7 1.4 3E-05 38.5 1.9 59 91-158 594-652 (680)
130 KOG1265|consensus 78.1 31 0.00068 32.1 10.1 126 30-159 156-295 (1189)
131 PF14513 DAG_kinase_N: Diacylg 75.9 2.3 4.9E-05 30.3 2.1 67 36-102 5-81 (138)
132 KOG1707|consensus 75.5 4 8.6E-05 35.8 3.8 67 13-79 306-374 (625)
133 KOG1029|consensus 74.7 10 0.00022 34.5 6.2 131 16-158 10-252 (1118)
134 KOG0998|consensus 72.1 3.7 8.1E-05 37.7 3.1 66 15-80 276-343 (847)
135 KOG0169|consensus 71.8 24 0.00052 31.9 7.8 96 22-117 172-273 (746)
136 PLN02228 Phosphoinositide phos 66.5 36 0.00079 30.0 7.7 66 51-117 20-91 (567)
137 KOG1955|consensus 65.5 27 0.00059 30.3 6.6 31 88-118 263-293 (737)
138 PF09068 EF-hand_2: EF hand; 65.2 7.4 0.00016 27.2 2.8 64 54-117 40-124 (127)
139 cd07316 terB_like_DjlA N-termi 60.8 43 0.00094 21.7 7.7 78 35-114 12-97 (106)
140 KOG2243|consensus 58.5 14 0.00031 36.2 4.0 55 95-159 4062-4116(5019)
141 PLN02222 phosphoinositide phos 57.6 29 0.00062 30.7 5.6 61 17-82 23-90 (581)
142 PF02761 Cbl_N2: CBL proto-onc 57.4 51 0.0011 21.5 6.4 66 52-117 4-69 (85)
143 COG5097 MED6 RNA polymerase II 57.2 7.9 0.00017 28.7 1.8 32 1-32 22-56 (210)
144 KOG2557|consensus 55.3 56 0.0012 27.3 6.5 57 67-123 71-127 (427)
145 PF06226 DUF1007: Protein of u 55.0 20 0.00044 27.1 3.9 32 95-126 55-86 (212)
146 KOG0035|consensus 54.0 82 0.0018 29.3 7.9 65 57-121 749-819 (890)
147 PF05099 TerB: Tellurite resis 51.4 5.1 0.00011 27.7 0.1 79 34-114 35-120 (140)
148 COG4103 Uncharacterized protei 51.2 57 0.0012 23.4 5.3 91 21-117 29-128 (148)
149 KOG4004|consensus 50.9 14 0.0003 28.2 2.3 47 67-115 201-247 (259)
150 PF09373 PMBR: Pseudomurein-bi 50.5 36 0.00077 17.7 3.3 24 104-127 2-25 (33)
151 PLN02230 phosphoinositide phos 49.8 88 0.0019 27.8 7.3 65 53-117 27-101 (598)
152 PLN02222 phosphoinositide phos 49.8 85 0.0018 27.8 7.2 65 52-117 22-89 (581)
153 PF05042 Caleosin: Caleosin re 48.6 34 0.00074 25.3 4.0 31 89-119 95-125 (174)
154 KOG2871|consensus 46.9 29 0.00062 29.0 3.7 30 90-119 309-338 (449)
155 KOG4004|consensus 44.3 12 0.00027 28.5 1.1 47 28-74 193-242 (259)
156 PLN02228 Phosphoinositide phos 43.9 78 0.0017 27.9 6.1 62 17-83 22-93 (567)
157 PF07879 PHB_acc_N: PHB/PHA ac 43.7 14 0.00031 22.6 1.2 22 97-118 10-31 (64)
158 PF12486 DUF3702: ImpA domain 41.5 56 0.0012 23.5 4.1 49 92-144 71-119 (148)
159 PLN02230 phosphoinositide phos 40.7 79 0.0017 28.1 5.7 59 23-82 30-102 (598)
160 PF09068 EF-hand_2: EF hand; 39.9 1.3E+02 0.0028 20.9 6.7 99 59-158 4-120 (127)
161 KOG4347|consensus 39.3 49 0.0011 29.5 4.2 29 91-119 556-584 (671)
162 cd07177 terB_like tellurium re 38.3 1E+02 0.0022 19.4 5.5 79 35-115 12-97 (104)
163 PF03979 Sigma70_r1_1: Sigma-7 37.2 37 0.00079 21.6 2.4 32 34-65 17-49 (82)
164 PF00046 Homeobox: Homeobox do 36.0 78 0.0017 18.0 3.6 45 13-62 4-49 (57)
165 PF12631 GTPase_Cys_C: Catalyt 34.9 85 0.0019 19.3 3.8 49 91-144 24-72 (73)
166 PRK09430 djlA Dna-J like membr 33.5 2.4E+02 0.0052 22.2 8.5 84 33-122 66-160 (267)
167 PF08100 Dimerisation: Dimeris 33.2 51 0.0011 19.1 2.4 37 27-63 11-49 (51)
168 PLN02223 phosphoinositide phos 32.8 1.2E+02 0.0027 26.5 5.6 59 23-82 17-92 (537)
169 PF15017 AF1Q: Drug resistance 32.3 25 0.00055 23.0 1.0 16 100-115 69-84 (87)
170 PF08976 DUF1880: Domain of un 29.7 61 0.0013 22.4 2.6 30 51-80 3-33 (118)
171 KOG1265|consensus 29.4 3.5E+02 0.0077 25.6 7.9 69 14-82 203-299 (1189)
172 PRK11511 DNA-binding transcrip 29.4 1.7E+02 0.0036 20.0 4.9 88 21-119 8-99 (127)
173 cd00086 homeodomain Homeodomai 29.1 1.1E+02 0.0025 17.1 4.8 46 13-63 4-50 (59)
174 COG4359 Uncharacterized conser 27.2 91 0.002 23.7 3.4 50 34-85 9-58 (220)
175 TIGR02675 tape_meas_nterm tape 26.9 1.3E+02 0.0029 18.7 3.7 16 103-118 27-42 (75)
176 PF05901 Excalibur: Excalibur 26.5 31 0.00068 18.5 0.6 9 98-106 26-34 (37)
177 cd07176 terB tellurite resista 26.3 1.1E+02 0.0023 19.8 3.4 78 35-114 15-101 (111)
178 PF06569 DUF1128: Protein of u 25.9 1.8E+02 0.0038 18.3 4.5 59 53-121 5-68 (71)
179 PRK13696 hypothetical protein; 25.5 1.7E+02 0.0036 17.9 4.5 51 52-115 8-58 (62)
180 PF11363 DUF3164: Protein of u 25.2 3E+02 0.0065 20.7 6.4 32 86-117 115-146 (195)
181 COG3855 Fbp Uncharacterized pr 24.6 2.5E+02 0.0053 24.5 5.8 36 25-61 50-85 (648)
182 PF05517 p25-alpha: p25-alpha 24.4 2.7E+02 0.0058 19.9 9.1 90 58-150 2-98 (154)
183 PF13720 Acetyltransf_11: Udp 22.9 83 0.0018 20.1 2.3 56 6-64 18-74 (83)
184 KOG2419|consensus 22.8 86 0.0019 28.3 2.9 66 54-119 436-534 (975)
185 TIGR02787 codY_Gpos GTP-sensin 22.7 1.9E+02 0.0041 22.8 4.5 40 10-50 171-210 (251)
186 TIGR01848 PHA_reg_PhaR polyhyd 22.6 52 0.0011 22.4 1.2 22 97-118 10-31 (107)
187 TIGR03112 6_pyr_pter_rel 6-pyr 22.4 97 0.0021 21.1 2.6 44 104-147 38-89 (113)
188 PF13373 DUF2407_C: DUF2407 C- 21.9 90 0.002 22.2 2.4 20 12-31 7-26 (140)
189 KOG4403|consensus 21.8 78 0.0017 27.0 2.4 34 11-47 60-93 (575)
190 PF11116 DUF2624: Protein of u 21.6 2.4E+02 0.0052 18.3 7.2 53 69-121 13-65 (85)
191 PF12174 RST: RCD1-SRO-TAF4 (R 21.1 2E+02 0.0042 17.9 3.6 47 70-119 8-54 (70)
192 PRK14703 glutaminyl-tRNA synth 20.1 3.7E+02 0.0081 24.8 6.4 54 88-144 663-723 (771)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.96 E-value=1.4e-28 Score=177.71 Aligned_cols=141 Identities=13% Similarity=0.266 Sum_probs=127.5
Q ss_pred hhccCCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhcc---cCCCCCHHHHHHHHHhhcCCCCccchHHHHHHHHhhh-c
Q psy11348 10 RLEKNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAY---GTGTLTPVFIERVFQECLTFETQMDYKTYLDFVLSLE-N 85 (160)
Q Consensus 10 ~~~~~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~---~~~~~~~~~v~~i~~~~d~~~g~I~f~eF~~~~~~~~-~ 85 (160)
....+.|+.+++++|+++|..+|+|++|.|+.++|..+ ++.++|++++.+|+..++.+++.|+|.+|+.+|.... .
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~~ 87 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKR 87 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhcc
Confidence 56788999999999999999999999999999999987 4778899999999999988889999999999998754 4
Q ss_pred CCcHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 86 KHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 86 ~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
..+++.++++|++||+|++|+|+..+|+++++.+++.+ .++.++.|+++++++++|.|+|++|++
T Consensus 88 ~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~---------~deev~~ll~~~d~d~dG~i~~~eF~~ 152 (160)
T COG5126 88 GDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERL---------SDEEVEKLLKEYDEDGDGEIDYEEFKK 152 (160)
T ss_pred CCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccC---------CHHHHHHHHHhcCCCCCceEeHHHHHH
Confidence 66678999999999999999999999999999776654 355568999999999999999999985
No 2
>KOG2562|consensus
Probab=99.95 E-value=2.4e-28 Score=198.28 Aligned_cols=152 Identities=37% Similarity=0.637 Sum_probs=143.9
Q ss_pred hhhccCCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhcccCCCCCHHHHHHHHHhhc-----CCCCccchHHHHHHHHhh
Q psy11348 9 DRLEKNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAYGTGTLTPVFIERVFQECL-----TFETQMDYKTYLDFVLSL 83 (160)
Q Consensus 9 ~~~~~~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~~~~~~~~~v~~i~~~~d-----~~~g~I~f~eF~~~~~~~ 83 (160)
-.+..++||.++++.+|+.|..+|+|++|.|+.++|..+..+.++..+++|||+.+- ..+|.|+|++|+.|+.+.
T Consensus 265 ~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~ 344 (493)
T KOG2562|consen 265 INQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE 344 (493)
T ss_pred hhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh
Confidence 356789999999999999999999999999999999999988889999999999443 268999999999999999
Q ss_pred hcCCcHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhcC
Q psy11348 84 ENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLIDW 160 (160)
Q Consensus 84 ~~~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~~ 160 (160)
+.+.++.++.+||+++|.+|+|+|+..||+.+++++.+.|..+|.+++++++++++|+++++|.+.++||+++|++|
T Consensus 345 e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 345 EDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKGS 421 (493)
T ss_pred ccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>KOG0027|consensus
Probab=99.90 E-value=3.4e-23 Score=149.76 Aligned_cols=135 Identities=18% Similarity=0.331 Sum_probs=117.4
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCcCHHHHhcc---cCCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhc-CC---
Q psy11348 16 FSATSALRVYGQYLHLDKNHNGVLSKEELAAY---GTGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLEN-KH--- 87 (160)
Q Consensus 16 f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~---~~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~-~~--- 87 (160)
++.+++..++.+|..+|++++|.|+..+|..+ ++..+++.++..+++.++. ++|.|+|.+|+.++..... ..
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 56788999999999999999999999999986 4667899999999999985 8999999999998876332 22
Q ss_pred -cHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 88 -EPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 88 -~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
....++.+|++||.||+|+||.+||+.+++.+++++ + .+.+.+|++.++.+++|.|+|++|++
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~--------~-~~e~~~mi~~~d~d~dg~i~f~ef~~ 145 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKL--------T-DEECKEMIREVDVDGDGKVNFEEFVK 145 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcC--------C-HHHHHHHHHhcCCCCCCeEeHHHHHH
Confidence 234899999999999999999999999998876544 2 45568999999999999999999975
No 4
>KOG0044|consensus
Probab=99.90 E-value=1.3e-22 Score=151.21 Aligned_cols=154 Identities=17% Similarity=0.272 Sum_probs=134.1
Q ss_pred ccchhhhhccCCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhccc----CCCCCHHHHHHHHHhhcC-CCCccchHHHHH
Q psy11348 4 EGLSVDRLEKNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAYG----TGTLTPVFIERVFQECLT-FETQMDYKTYLD 78 (160)
Q Consensus 4 ~~~~~~~~~~~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~----~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~ 78 (160)
.+.++.....+.|+..+++.+|+-|.. .+++|.++.++++.+. ..+-++.+++++|..+|. ++|.|+|.||+.
T Consensus 11 ~~~~e~l~~~t~f~~~ei~~~Yr~Fk~--~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~ 88 (193)
T KOG0044|consen 11 PESLEQLVQQTKFSKKEIQQWYRGFKN--ECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFIC 88 (193)
T ss_pred cHHHHHHHHhcCCCHHHHHHHHHHhcc--cCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHH
Confidence 345667778999999999999999988 8999999999999863 234467899999999986 899999999999
Q ss_pred HHHhhhcCCcHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcC--CCCCChHhHHHHHHHhcCCCCCCCeehhh
Q psy11348 79 FVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESE--QEPINFEDVKDEIFDMAKPKDPSRITLQD 156 (160)
Q Consensus 79 ~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g--~~~~~~~~~~~~i~~~~~~~~~g~it~~e 156 (160)
.++...+....++++|+|++||.||+|+|+..|+-.++++++..+.... ..+.+.++.++.++..++.++||.||++|
T Consensus 89 als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~ee 168 (193)
T KOG0044|consen 89 ALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEE 168 (193)
T ss_pred HHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHH
Confidence 9988777777889999999999999999999999999999988764311 23567889999999999999999999999
Q ss_pred hhc
Q psy11348 157 LID 159 (160)
Q Consensus 157 F~~ 159 (160)
|++
T Consensus 169 f~~ 171 (193)
T KOG0044|consen 169 FIE 171 (193)
T ss_pred HHH
Confidence 975
No 5
>KOG0034|consensus
Probab=99.90 E-value=7.9e-23 Score=152.04 Aligned_cols=151 Identities=21% Similarity=0.393 Sum_probs=122.9
Q ss_pred ccchhhhhccC---CCCHHHHHHHHHHHhhhcCC-CCCCcCHHHHhcccCCCCCHHHHHHHHHhhcC-CCCc-cchHHHH
Q psy11348 4 EGLSVDRLEKN---WFSATSALRVYGQYLHLDKN-HNGVLSKEELAAYGTGTLTPVFIERVFQECLT-FETQ-MDYKTYL 77 (160)
Q Consensus 4 ~~~~~~~~~~~---~f~~~~~~~l~~~F~~lD~d-~~G~I~~~el~~~~~~~~~~~~v~~i~~~~d~-~~g~-I~f~eF~ 77 (160)
+++......+. .||..|+..||.+|..+|.+ ++|.|+.++|..+... ..++...||+..++. ++|. |+|++|+
T Consensus 12 ~~~~~~~~~~~~~~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~-~~Np~~~rI~~~f~~~~~~~~v~F~~Fv 90 (187)
T KOG0034|consen 12 EDLEELQMYTGDPTQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPEL-ALNPLADRIIDRFDTDGNGDPVDFEEFV 90 (187)
T ss_pred hhhHHHHhccCCCcccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHH-hcCcHHHHHHHHHhccCCCCccCHHHHH
Confidence 44444444443 39999999999999999999 9999999999998743 234588999999885 5555 9999999
Q ss_pred HHHHhhhcCCcH-HHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCC--CCChHhHHHHHHHhcCCCCCCCeeh
Q psy11348 78 DFVLSLENKHEP-QALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQE--PINFEDVKDEIFDMAKPKDPSRITL 154 (160)
Q Consensus 78 ~~~~~~~~~~~~-~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~--~~~~~~~~~~i~~~~~~~~~g~it~ 154 (160)
+.+..+...... .+++++|++||.+++|+|+.+|+..+++.+.. .+.. ....+++++.++.++|.++||+|||
T Consensus 91 ~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~----~~~~~~~e~~~~i~d~t~~e~D~d~DG~Isf 166 (187)
T KOG0034|consen 91 RLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVG----ENDDMSDEQLEDIVDKTFEEADTDGDGKISF 166 (187)
T ss_pred HHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHc----cCCcchHHHHHHHHHHHHHHhCCCCCCcCcH
Confidence 999886654544 59999999999999999999999999886542 2322 3456778889999999999999999
Q ss_pred hhhhc
Q psy11348 155 QDLID 159 (160)
Q Consensus 155 ~eF~~ 159 (160)
+||.+
T Consensus 167 eEf~~ 171 (187)
T KOG0034|consen 167 EEFCK 171 (187)
T ss_pred HHHHH
Confidence 99975
No 6
>KOG0028|consensus
Probab=99.85 E-value=1e-20 Score=135.04 Aligned_cols=139 Identities=12% Similarity=0.165 Sum_probs=122.8
Q ss_pred ccCCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhc---ccCCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhh-hcC
Q psy11348 12 EKNWFSATSALRVYGQYLHLDKNHNGVLSKEELAA---YGTGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSL-ENK 86 (160)
Q Consensus 12 ~~~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~---~~~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~-~~~ 86 (160)
....++.++.+.++.+|..+|.+++|.|..+||+. ++|..+...++.+++..++. +.|.|+|++|++.+... ...
T Consensus 23 ~~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~ 102 (172)
T KOG0028|consen 23 PKSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGER 102 (172)
T ss_pred CCccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhcc
Confidence 56778889999999999999999999999999964 36778888999999999986 88999999999988763 345
Q ss_pred CcHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 87 HEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 87 ~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
.+.+.++.+|+.+|.|++|.||+.+|+.+.+++++.+ .++.+.+|+++++.+.+|.|+-++|.+
T Consensus 103 dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenl---------tD~El~eMIeEAd~d~dgevneeEF~~ 166 (172)
T KOG0028|consen 103 DTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENL---------TDEELMEMIEEADRDGDGEVNEEEFIR 166 (172)
T ss_pred CcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccc---------cHHHHHHHHHHhcccccccccHHHHHH
Confidence 6778999999999999999999999999999887654 244568999999999999999999965
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.83 E-value=1.3e-19 Score=128.96 Aligned_cols=137 Identities=12% Similarity=0.268 Sum_probs=114.4
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhccc---CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhh-cCCc
Q psy11348 14 NWFSATSALRVYGQYLHLDKNHNGVLSKEELAAYG---TGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLE-NKHE 88 (160)
Q Consensus 14 ~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~---~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~-~~~~ 88 (160)
..++.+++..++..|..+|.+++|.|+.++|..++ +..+++..+.+++..++. ++|.|+|++|+.++.... ....
T Consensus 3 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~ 82 (149)
T PTZ00184 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDS 82 (149)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcH
Confidence 34788999999999999999999999999999763 445678899999999985 789999999999887643 2344
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 89 PQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 89 ~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
...++.+|+.+|.+++|+|+..+++.+++.++ . .+ ....+..++..++.+++|.|+|++|+.
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~-------~-~~-~~~~~~~~~~~~d~~~~g~i~~~ef~~ 144 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLG-------E-KL-TDEEVDEMIREADVDGDGQINYEEFVK 144 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHC-------C-CC-CHHHHHHHHHhcCCCCCCcCcHHHHHH
Confidence 56799999999999999999999999887532 1 12 344568899999999999999999975
No 8
>PTZ00183 centrin; Provisional
Probab=99.82 E-value=2e-19 Score=129.58 Aligned_cols=138 Identities=14% Similarity=0.206 Sum_probs=115.3
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhccc---CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhh-hcCCc
Q psy11348 14 NWFSATSALRVYGQYLHLDKNHNGVLSKEELAAYG---TGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSL-ENKHE 88 (160)
Q Consensus 14 ~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~---~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~-~~~~~ 88 (160)
..++.+++..+..+|..+|.+++|.|+..+|..++ +..++...+..++..++. ++|.|+|.+|+.++... .....
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 88 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDP 88 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCc
Confidence 45889999999999999999999999999998764 445678899999999985 88999999999877653 23444
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhcC
Q psy11348 89 PQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLIDW 160 (160)
Q Consensus 89 ~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~~ 160 (160)
...++.+|+.+|.+++|+|+..|+..++..++.. ++ +..+.+++..++.+++|.|+|++|+++
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~--------l~-~~~~~~~~~~~d~~~~g~i~~~ef~~~ 151 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELGET--------IT-DEELQEMIDEADRNGDGEISEEEFYRI 151 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC--------CC-HHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 5689999999999999999999999988754321 23 344588999999999999999999863
No 9
>KOG0031|consensus
Probab=99.80 E-value=1.8e-18 Score=122.83 Aligned_cols=133 Identities=15% Similarity=0.254 Sum_probs=116.5
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhcc---cCCCCCHHHHHHHHHhhcCCCCccchHHHHHHHHh-hhcCCcHH
Q psy11348 15 WFSATSALRVYGQYLHLDKNHNGVLSKEELAAY---GTGTLTPVFIERVFQECLTFETQMDYKTYLDFVLS-LENKHEPQ 90 (160)
Q Consensus 15 ~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~---~~~~~~~~~v~~i~~~~d~~~g~I~f~eF~~~~~~-~~~~~~~~ 90 (160)
-|+..||++++++|..+|.|+||.|..++|+.. +|...++.++..++.+ ..|-|+|.-|+.++.. +...++++
T Consensus 25 mf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E---a~gPINft~FLTmfGekL~gtdpe~ 101 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE---APGPINFTVFLTMFGEKLNGTDPEE 101 (171)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh---CCCCeeHHHHHHHHHHHhcCCCHHH
Confidence 478899999999999999999999999999975 5667899999999976 5678999999998776 55566667
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 91 ALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 91 ~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
.+.-+|++||.+++|.|..+.|++++..++++++ .++ +++|++..-++..|.|.|..|.+
T Consensus 102 ~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~--------~eE-V~~m~r~~p~d~~G~~dy~~~~~ 161 (171)
T KOG0031|consen 102 VILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFT--------DEE-VDEMYREAPIDKKGNFDYKAFTY 161 (171)
T ss_pred HHHHHHHhcCccCCCccCHHHHHHHHHHhcccCC--------HHH-HHHHHHhCCcccCCceeHHHHHH
Confidence 8999999999999999999999999999887763 344 58999999999899999999864
No 10
>KOG0030|consensus
Probab=99.77 E-value=6.7e-18 Score=118.05 Aligned_cols=136 Identities=13% Similarity=0.192 Sum_probs=112.5
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhcc---cCCCCCHHHHHHHHHhhcC---CCCccchHHHHHHHHhhhc--
Q psy11348 14 NWFSATSALRVYGQYLHLDKNHNGVLSKEELAAY---GTGTLTPVFIERVFQECLT---FETQMDYKTYLDFVLSLEN-- 85 (160)
Q Consensus 14 ~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~---~~~~~~~~~v~~i~~~~d~---~~g~I~f~eF~~~~~~~~~-- 85 (160)
.-|++++...++++|.++|+.+||+|+...+..+ ++.++|+++|.+....... +-..|+|++|+-++..+.+
T Consensus 3 ~~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 3 IAFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred cccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc
Confidence 3577888899999999999999999999998864 6888999999999988764 4478999999998887532
Q ss_pred -CCcHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 86 -KHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 86 -~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
..+.+..-...++||++++|+|...||++++.++|++|+ ++.+++++.- ..+++|.|+|++|++
T Consensus 83 ~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~---------eeEVe~Llag-~eD~nG~i~YE~fVk 147 (152)
T KOG0030|consen 83 DQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLT---------EEEVEELLAG-QEDSNGCINYEAFVK 147 (152)
T ss_pred ccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhcc---------HHHHHHHHcc-ccccCCcCcHHHHHH
Confidence 445678888999999999999999999999999999984 2233545432 335679999999986
No 11
>KOG0038|consensus
Probab=99.72 E-value=3.6e-17 Score=115.50 Aligned_cols=152 Identities=13% Similarity=0.209 Sum_probs=118.3
Q ss_pred CccchhhhhccCCCCHHHHHHHHHHHhhhcCCC-----CC------CcCHHHHhcccCCCCCHHHHHHHHHhhc-CCCCc
Q psy11348 3 DEGLSVDRLEKNWFSATSALRVYGQYLHLDKNH-----NG------VLSKEELAAYGTGTLTPVFIERVFQECL-TFETQ 70 (160)
Q Consensus 3 ~~~~~~~~~~~~~f~~~~~~~l~~~F~~lD~d~-----~G------~I~~~el~~~~~~~~~~~~v~~i~~~~d-~~~g~ 70 (160)
||+-+.+|+.|++|+..+|.+++.+|..+-++- .| .++.+.+.+.... ..+++-+||.+.+. .+.|.
T Consensus 9 T~eqLd~YQDCTFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPEL-kenpfk~ri~e~FSeDG~Gn 87 (189)
T KOG0038|consen 9 TEEQLDEYQDCTFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPEL-KENPFKRRICEVFSEDGRGN 87 (189)
T ss_pred eHHHHhhhcccccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChhh-hcChHHHHHHHHhccCCCCc
Confidence 566778999999999999999999998875541 11 3444444443222 13457788888886 48999
Q ss_pred cchHHHHHHHHhhhcCCcH-HHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCC
Q psy11348 71 MDYKTYLDFVLSLENKHEP-QALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDP 149 (160)
Q Consensus 71 I~f~eF~~~~~~~~~~~~~-~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~ 149 (160)
++|++|+.+.+.+....+. -++.++|++||-|+|++|...+|...++++ +..+..+...+.+++.++++++.++|
T Consensus 88 lsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~l----Tr~eLs~eEv~~i~ekvieEAD~DgD 163 (189)
T KOG0038|consen 88 LSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSL----TRDELSDEEVELICEKVIEEADLDGD 163 (189)
T ss_pred ccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHH----hhccCCHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999887665544 589999999999999999999999888754 44455444556688999999999999
Q ss_pred CCeehhhhhc
Q psy11348 150 SRITLQDLID 159 (160)
Q Consensus 150 g~it~~eF~~ 159 (160)
|++++.+|-+
T Consensus 164 gkl~~~eFe~ 173 (189)
T KOG0038|consen 164 GKLSFAEFEH 173 (189)
T ss_pred CcccHHHHHH
Confidence 9999999853
No 12
>KOG0036|consensus
Probab=99.61 E-value=9.9e-15 Score=117.96 Aligned_cols=133 Identities=17% Similarity=0.286 Sum_probs=112.6
Q ss_pred cCCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhcc---cCCC-CCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhcCC
Q psy11348 13 KNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAY---GTGT-LTPVFIERVFQECLT-FETQMDYKTYLDFVLSLENKH 87 (160)
Q Consensus 13 ~~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~---~~~~-~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~~~ 87 (160)
....+++.-.+++.+|..||.+++|.|+.+++.+. ++++ ++...+..+++.+|. .+|.+||+||.+|+...+
T Consensus 5 ~~~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E--- 81 (463)
T KOG0036|consen 5 LRETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKE--- 81 (463)
T ss_pred ccCCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhH---
Confidence 34556677789999999999999999999999953 4554 567788999999985 899999999999998654
Q ss_pred cHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 88 EPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 88 ~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
.++..+|+.+|.++||.|.+.|+.+.+++++.++ +.++ +..+++.+++++++.|+++||..
T Consensus 82 --~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l--------~de~-~~k~~e~~d~~g~~~I~~~e~rd 142 (463)
T KOG0036|consen 82 --LELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQL--------SDEK-AAKFFEHMDKDGKATIDLEEWRD 142 (463)
T ss_pred --HHHHHHHhhhccccCCccCHHHHHHHHHHhCCcc--------CHHH-HHHHHHHhccCCCeeeccHHHHh
Confidence 5799999999999999999999999998776443 3444 57799999999999999999864
No 13
>KOG0037|consensus
Probab=99.50 E-value=2.1e-13 Score=102.26 Aligned_cols=126 Identities=13% Similarity=0.175 Sum_probs=105.2
Q ss_pred HHHHHHHHHhhhcCCCCCCcCHHHHhcccC----CCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhcCCcHHHHHH
Q psy11348 20 SALRVYGQYLHLDKNHNGVLSKEELAAYGT----GTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLENKHEPQALQY 94 (160)
Q Consensus 20 ~~~~l~~~F~~lD~d~~G~I~~~el~~~~~----~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~~~~~~~l~~ 94 (160)
....+...|...|+|+.|.|+.+||+.++. .+++..-+.-|+..+|. +.|.|.|+||...-..+ ...+.
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i------~~Wr~ 128 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI------NQWRN 128 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH------HHHHH
Confidence 356788899999999999999999999853 25677788888888886 88999999998754433 36788
Q ss_pred HHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhcC
Q psy11348 95 LFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLIDW 160 (160)
Q Consensus 95 ~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~~ 160 (160)
+|+-||+|++|.|+..||+..+..+|=.+ ..++.+-+++..++...|.|.|++|+.|
T Consensus 129 vF~~~D~D~SG~I~~sEL~~Al~~~Gy~L---------spq~~~~lv~kyd~~~~g~i~FD~FI~c 185 (221)
T KOG0037|consen 129 VFRTYDRDRSGTIDSSELRQALTQLGYRL---------SPQFYNLLVRKYDRFGGGRIDFDDFIQC 185 (221)
T ss_pred HHHhcccCCCCcccHHHHHHHHHHcCcCC---------CHHHHHHHHHHhccccCCceeHHHHHHH
Confidence 99999999999999999999988765444 3567788889988887899999999876
No 14
>PLN02964 phosphatidylserine decarboxylase
Probab=99.48 E-value=3.8e-13 Score=115.90 Aligned_cols=109 Identities=12% Similarity=0.102 Sum_probs=91.6
Q ss_pred hhhcc--CCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhcccC-CCCCHHH---HHHHHHhhcC-CCCccchHHHHHHHH
Q psy11348 9 DRLEK--NWFSATSALRVYGQYLHLDKNHNGVLSKEELAAYGT-GTLTPVF---IERVFQECLT-FETQMDYKTYLDFVL 81 (160)
Q Consensus 9 ~~~~~--~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~~-~~~~~~~---v~~i~~~~d~-~~g~I~f~eF~~~~~ 81 (160)
.+.+. +.|+.+|+..++++|..+|+|++|.+ ...+...++ ..+++.+ +.++|+.+|. ++|.|+|+||+.++.
T Consensus 128 ~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~ 206 (644)
T PLN02964 128 GYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIK 206 (644)
T ss_pred hheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 34455 78999999999999999999999998 444444456 3566654 8999999985 889999999999988
Q ss_pred hhhcCCcHHHHHHHHHHhccCCCCccCHHHHHHHHHH
Q psy11348 82 SLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKA 118 (160)
Q Consensus 82 ~~~~~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~ 118 (160)
.+....+++.++.+|+.||.|++|+|+.+||+.++..
T Consensus 207 ~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 207 AFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 7655566778999999999999999999999999987
No 15
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.28 E-value=4.6e-12 Score=78.80 Aligned_cols=64 Identities=19% Similarity=0.386 Sum_probs=53.0
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 91 ALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 91 ~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
+++.+|+.+|.|++|+|+.+||+.+++.++..+. ....++.+..+++.++++++|.|||+||.+
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~-----~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~ 64 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMS-----DEESDEMIDQIFREFDTDGDGRISFDEFLN 64 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHST-----HHHHHHHHHHHHHHHTTTSSSSEEHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHhCCCCcCCCcHHHHhc
Confidence 4789999999999999999999999987654321 112455678889999999999999999975
No 16
>KOG4223|consensus
Probab=99.25 E-value=6e-11 Score=93.63 Aligned_cols=137 Identities=17% Similarity=0.262 Sum_probs=100.2
Q ss_pred cCCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhcccCC----CCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhc-C
Q psy11348 13 KNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAYGTG----TLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLEN-K 86 (160)
Q Consensus 13 ~~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~~~----~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~-~ 86 (160)
.+..-+..+.+-.+.|+.-|.|++|.+|.+||..++-. .+.+.-|..-+..+|. ++|.|+++||+.=|..... .
T Consensus 154 ~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~ 233 (325)
T KOG4223|consen 154 DNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNE 233 (325)
T ss_pred hcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCC
Confidence 33444556778889999999999999999999998642 1234455566666664 8999999999996655332 1
Q ss_pred CcH----HHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhh
Q psy11348 87 HEP----QALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLI 158 (160)
Q Consensus 87 ~~~----~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~ 158 (160)
..+ ..-..+|...|+|+||+++.+|++.++-- .+ ..-....+..++-+++.++||++|++|-+
T Consensus 234 ~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P-------~~--~d~A~~EA~hL~~eaD~dkD~kLs~eEIl 300 (325)
T KOG4223|consen 234 EEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILP-------SE--QDHAKAEARHLLHEADEDKDGKLSKEEIL 300 (325)
T ss_pred CCcccccccHHHHHHHhhcCCCCccCHHHHhcccCC-------CC--ccHHHHHHHHHhhhhccCccccccHHHHh
Confidence 111 13457789999999999999999977521 11 11234456789999999999999999865
No 17
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.19 E-value=4.6e-11 Score=79.00 Aligned_cols=62 Identities=8% Similarity=0.122 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcc-CCCCccCHHHHHHHHHH-HHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 90 QALQYLFRFLDI-KHQGYLDTFTLFYFFKA-ISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 90 ~~l~~~F~~~D~-d~dG~I~~~el~~~~~~-~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
..++.+|+.||+ +++|+|+.+||+.++++ +++.++ ..+.+++|++.++.++||.|+|+||.+
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls--------~~~~v~~mi~~~D~d~DG~I~F~EF~~ 71 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLK--------DVEGLEEKMKNLDVNQDSKLSFEEFWE 71 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhcc--------CHHHHHHHHHHhCCCCCCCCcHHHHHH
Confidence 368999999999 99999999999999988 665442 214569999999999999999999975
No 18
>PTZ00183 centrin; Provisional
Probab=99.14 E-value=7.4e-10 Score=79.45 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=79.4
Q ss_pred HHHHHHhhhcCCCCCCcCHHHHhccc----CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhcCCcHHHHHHHHH
Q psy11348 23 RVYGQYLHLDKNHNGVLSKEELAAYG----TGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLENKHEPQALQYLFR 97 (160)
Q Consensus 23 ~l~~~F~~lD~d~~G~I~~~el~~~~----~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~~~~~~~l~~~F~ 97 (160)
.+..+|..+|.+++|.|+..++..++ ....+...+..+|..+|. ++|.|+..+|..++.......+...+..+|.
T Consensus 54 ~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~ 133 (158)
T PTZ00183 54 EIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMID 133 (158)
T ss_pred HHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 35677888999999999999998753 223456788999999985 7899999999999886544556678999999
Q ss_pred HhccCCCCccCHHHHHHHHH
Q psy11348 98 FLDIKHQGYLDTFTLFYFFK 117 (160)
Q Consensus 98 ~~D~d~dG~I~~~el~~~~~ 117 (160)
.+|.|++|.|+.+++..+++
T Consensus 134 ~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 134 EADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred HhCCCCCCcCcHHHHHHHHh
Confidence 99999999999999988764
No 19
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.08 E-value=5.1e-10 Score=74.88 Aligned_cols=68 Identities=12% Similarity=0.164 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhccc-CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHh
Q psy11348 15 WFSATSALRVYGQYLHLDKNHNGVLSKEELAAYG-TGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLS 82 (160)
Q Consensus 15 ~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~-~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~ 82 (160)
++|.+++..+..+|..+|++++|.|+.++++.++ ..++++..+.+++..++. ++|.|+|++|+.++..
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 6789999999999999999999999999999875 235678889999998885 7899999999987765
No 20
>KOG0037|consensus
Probab=99.04 E-value=1.2e-09 Score=82.11 Aligned_cols=84 Identities=19% Similarity=0.270 Sum_probs=74.5
Q ss_pred HHHHHHHHhhhcCCCCCCcCHHHHhcc---cCCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhcCCcHHHHHHHH
Q psy11348 21 ALRVYGQYLHLDKNHNGVLSKEELAAY---GTGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLENKHEPQALQYLF 96 (160)
Q Consensus 21 ~~~l~~~F~~lD~d~~G~I~~~el~~~---~~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~~~~~~~l~~~F 96 (160)
++.|++.|..+|+|++|.|+..||+.+ ++..+++..++-|+..++. ++|.|.|++|+..+..+ .++-.+|
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L------~~lt~~F 196 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL------QRLTEAF 196 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH------HHHHHHH
Confidence 567779999999999999999999987 4668899999999999986 59999999999988765 3788999
Q ss_pred HHhccCCCCccCHH
Q psy11348 97 RFLDIKHQGYLDTF 110 (160)
Q Consensus 97 ~~~D~d~dG~I~~~ 110 (160)
+.+|.+.+|.|+..
T Consensus 197 r~~D~~q~G~i~~~ 210 (221)
T KOG0037|consen 197 RRRDTAQQGSITIS 210 (221)
T ss_pred HHhccccceeEEEe
Confidence 99999999999864
No 21
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.02 E-value=3.7e-10 Score=74.55 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=52.0
Q ss_pred HHHHHHHHHhc-cCCCC-ccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 90 QALQYLFRFLD-IKHQG-YLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 90 ~~l~~~F~~~D-~d~dG-~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
..++.+|+.|| +||+| +|+.+||+.++++....+ .|. .+ .++.++++++.++++++|.|+|++|+.
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~--lg~-~~-~~~~v~~~i~~~D~n~dG~v~f~eF~~ 75 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHF--LEE-IK-EQEVVDKVMETLDSDGDGECDFQEFMA 75 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHH--hcC-CC-CHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 36899999998 89999 699999999998733222 121 22 334468999999999999999999975
No 22
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.98 E-value=1e-09 Score=68.09 Aligned_cols=57 Identities=26% Similarity=0.492 Sum_probs=35.9
Q ss_pred HHHHHHhhhcCCCCCCcCHHHHhccc---CCCCC----HHHHHHHHHhhcC-CCCccchHHHHHH
Q psy11348 23 RVYGQYLHLDKNHNGVLSKEELAAYG---TGTLT----PVFIERVFQECLT-FETQMDYKTYLDF 79 (160)
Q Consensus 23 ~l~~~F~~lD~d~~G~I~~~el~~~~---~~~~~----~~~v~~i~~~~d~-~~g~I~f~eF~~~ 79 (160)
+|+++|..+|+|++|+|+.+||..++ +...+ ...++.+|..+|. ++|.|+|+||+.+
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 47788999999999999999988764 22222 2334444555553 4555555555544
No 23
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.98 E-value=1.8e-09 Score=71.99 Aligned_cols=64 Identities=9% Similarity=0.108 Sum_probs=51.0
Q ss_pred HHHHHHHHhc-cCCCC-ccCHHHHHHHHHHH-HHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 91 ALQYLFRFLD-IKHQG-YLDTFTLFYFFKAI-SKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 91 ~l~~~F~~~D-~d~dG-~I~~~el~~~~~~~-~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
.++.+|+.|| .||+| +||..||+.+++.. +..+.. .. .+..+++|++.++.+++|.|+|+||+.
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~----~~-~~~~v~~i~~elD~n~dG~Idf~EF~~ 77 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSS----QK-DPMLVDKIMNDLDSNKDNEVDFNEFVV 77 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhccc----cc-CHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 5788899999 79999 59999999999763 333321 12 344568999999999999999999975
No 24
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.97 E-value=1.7e-09 Score=71.73 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=52.5
Q ss_pred HHHHHHHHHhc-cCCCCc-cCHHHHHHHHHH-HHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 90 QALQYLFRFLD-IKHQGY-LDTFTLFYFFKA-ISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 90 ~~l~~~F~~~D-~d~dG~-I~~~el~~~~~~-~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
..++.+|++|| .|++|+ |+.+||+.+++. ++..+. . .+ .++.+.+++..++++++|.|+|++|+.
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~---~-~~-s~~~v~~i~~~~D~d~~G~I~f~eF~~ 76 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLD---A-QK-DADAVDKIMKELDENGDGEVDFQEFVV 76 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHcc---C-CC-CHHHHHHHHHHHCCCCCCcCcHHHHHH
Confidence 46899999997 999995 999999999985 554332 1 12 344568999999999999999999975
No 25
>PTZ00184 calmodulin; Provisional
Probab=98.96 E-value=1.1e-08 Score=72.37 Aligned_cols=94 Identities=13% Similarity=0.118 Sum_probs=77.5
Q ss_pred HHHHHHhhhcCCCCCCcCHHHHhcccC----CCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhcCCcHHHHHHHHH
Q psy11348 23 RVYGQYLHLDKNHNGVLSKEELAAYGT----GTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLENKHEPQALQYLFR 97 (160)
Q Consensus 23 ~l~~~F~~lD~d~~G~I~~~el~~~~~----~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~~~~~~~l~~~F~ 97 (160)
.+..+|..+|.+++|.|+.+++..++. .......+..+|..+|. ++|.|+.++|..++.......+...+..+|+
T Consensus 48 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 127 (149)
T PTZ00184 48 ELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIR 127 (149)
T ss_pred HHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 457788889999999999999997642 22345678899999985 7899999999998876543445667899999
Q ss_pred HhccCCCCccCHHHHHHHH
Q psy11348 98 FLDIKHQGYLDTFTLFYFF 116 (160)
Q Consensus 98 ~~D~d~dG~I~~~el~~~~ 116 (160)
.+|.+++|.|+.+|+..++
T Consensus 128 ~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 128 EADVDGDGQINYEEFVKMM 146 (149)
T ss_pred hcCCCCCCcCcHHHHHHHH
Confidence 9999999999999998765
No 26
>KOG0027|consensus
Probab=98.95 E-value=7e-09 Score=74.80 Aligned_cols=95 Identities=12% Similarity=0.114 Sum_probs=79.3
Q ss_pred HHHHHHHhhhcCCCCCCcCHHHHhcccCC---C-----CCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhcCCcHHHH
Q psy11348 22 LRVYGQYLHLDKNHNGVLSKEELAAYGTG---T-----LTPVFIERVFQECLT-FETQMDYKTYLDFVLSLENKHEPQAL 92 (160)
Q Consensus 22 ~~l~~~F~~lD~d~~G~I~~~el~~~~~~---~-----~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~~~~~~~l 92 (160)
..+...+..+|.+++|.|+..+|..++.. . .+...+.+.|..+|. ++|.|+..|+..++..+....+...+
T Consensus 44 ~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~ 123 (151)
T KOG0027|consen 44 EELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEEC 123 (151)
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHH
Confidence 34566777899999999999999987421 1 134589999999996 89999999999999987776777889
Q ss_pred HHHHHHhccCCCCccCHHHHHHHH
Q psy11348 93 QYLFRFLDIKHQGYLDTFTLFYFF 116 (160)
Q Consensus 93 ~~~F~~~D~d~dG~I~~~el~~~~ 116 (160)
..+++..|.|+||.|+..++..++
T Consensus 124 ~~mi~~~d~d~dg~i~f~ef~~~m 147 (151)
T KOG0027|consen 124 KEMIREVDVDGDGKVNFEEFVKMM 147 (151)
T ss_pred HHHHHhcCCCCCCeEeHHHHHHHH
Confidence 999999999999999887777654
No 27
>KOG0044|consensus
Probab=98.95 E-value=7.7e-09 Score=77.39 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=73.0
Q ss_pred HHHHhhhcCCCCCCcCHHHHhccc---CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhc--C---------CcH
Q psy11348 25 YGQYLHLDKNHNGVLSKEELAAYG---TGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLEN--K---------HEP 89 (160)
Q Consensus 25 ~~~F~~lD~d~~G~I~~~el~~~~---~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~--~---------~~~ 89 (160)
+.+|+.+|.|++|.|+..|+...+ ..+..+.-+.-.|..+|. ++|.|+.+|++.++.+... . ..+
T Consensus 67 ~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~ 146 (193)
T KOG0044|consen 67 ELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPE 146 (193)
T ss_pred HHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHH
Confidence 366889999999999999977643 223345556667888885 8999999999998775321 1 124
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHH
Q psy11348 90 QALQYLFRFLDIKHQGYLDTFTLFYFFKA 118 (160)
Q Consensus 90 ~~l~~~F~~~D~d~dG~I~~~el~~~~~~ 118 (160)
..+..+|+.+|.|+||.||.+|+....++
T Consensus 147 ~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 147 ERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 57899999999999999999999987653
No 28
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.91 E-value=4.6e-09 Score=69.43 Aligned_cols=64 Identities=8% Similarity=0.133 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhhcC-CCCCCcCHHHHhcccC----CCCCH-HHHHHHHHhhcC-CCCccchHHHHHHHHh
Q psy11348 19 TSALRVYGQYLHLDK-NHNGVLSKEELAAYGT----GTLTP-VFIERVFQECLT-FETQMDYKTYLDFVLS 82 (160)
Q Consensus 19 ~~~~~l~~~F~~lD~-d~~G~I~~~el~~~~~----~~~~~-~~v~~i~~~~d~-~~g~I~f~eF~~~~~~ 82 (160)
..+..|..+|+.+|+ +++|+|+.+||+.++. ..++. .++..++..+|. ++|.|+|+||+.++..
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 457889999999999 9999999999998742 22455 789999999985 8999999999988765
No 29
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.91 E-value=2.8e-09 Score=73.76 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=49.7
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhcC
Q psy11348 90 QALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLIDW 160 (160)
Q Consensus 90 ~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~~ 160 (160)
..+.++|..+|.|+||+|+.+||..+. + .+.+..+..++..++.+++|.||++||.+|
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~------l-------~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~c 105 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIR------L-------DPNEHCIKPFFESCDLDKDGSISLDEWCYC 105 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHH------c-------cchHHHHHHHHHHHCCCCCCCCCHHHHHHH
Confidence 579999999999999999999999764 1 123555688999999999999999999875
No 30
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.91 E-value=7.1e-09 Score=69.05 Aligned_cols=65 Identities=15% Similarity=0.314 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhhc-CCCCC-CcCHHHHhcccC--------CCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhh
Q psy11348 19 TSALRVYGQYLHLD-KNHNG-VLSKEELAAYGT--------GTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSL 83 (160)
Q Consensus 19 ~~~~~l~~~F~~lD-~d~~G-~I~~~el~~~~~--------~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~ 83 (160)
.-+..+.++|+.+| +|++| .|+.+||+.++. ...++..+.+++..+|. ++|.|+|+||+.++..+
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 35778889999999 88999 599999998752 12367789999999985 78999999999987653
No 31
>KOG4223|consensus
Probab=98.89 E-value=5.4e-09 Score=82.70 Aligned_cols=132 Identities=18% Similarity=0.206 Sum_probs=94.2
Q ss_pred HHHHHHHHHhhhcCCCCCCcCHHHHhcccCC---CCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhh-------hcCC-
Q psy11348 20 SALRVYGQYLHLDKNHNGVLSKEELAAYGTG---TLTPVFIERVFQECLT-FETQMDYKTYLDFVLSL-------ENKH- 87 (160)
Q Consensus 20 ~~~~l~~~F~~lD~d~~G~I~~~el~~~~~~---~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~-------~~~~- 87 (160)
.-.++..+|..+|.+++|+|+.+|++.-... ..-...+.+-+..++. .+|.|+|++++..+... ....
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~ 154 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEED 154 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchh
Confidence 4467888999999999999999999975322 1122345555566664 89999999998755421 1111
Q ss_pred --cHH----HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 88 --EPQ----ALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 88 --~~~----~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
+.. +-+.-|+.-|.|+||.+|..||-.++.-- . .+-..+-++.+.+..++.++||+|+++||+.
T Consensus 155 ~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPE-----e---~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfig 224 (325)
T KOG4223|consen 155 NEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPE-----E---HPHMKDIVIAETLEDIDKNGDGKISLEEFIG 224 (325)
T ss_pred cHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChh-----h---cchHHHHHHHHHHhhcccCCCCceeHHHHHh
Confidence 111 23445999999999999999999887421 0 1112345778889999999999999999973
No 32
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.88 E-value=7.8e-09 Score=68.86 Aligned_cols=65 Identities=11% Similarity=0.152 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcc-CC-CCccCHHHHHHHHHH-HHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 90 QALQYLFRFLDI-KH-QGYLDTFTLFYFFKA-ISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 90 ~~l~~~F~~~D~-d~-dG~I~~~el~~~~~~-~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
..++.+|+.||. || +|+|+.+||+.+++. ++..+ |. .+ .++.+..+++.++.+++|.|+|++|++
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~l---g~-~~-s~~ei~~~~~~~D~~~dg~I~f~eF~~ 75 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFL---KN-QK-DPMAVDKIMKDLDQNRDGKVNFEEFVS 75 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHh---hc-cc-cHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 468999999997 97 799999999999986 33323 21 12 244568899999999999999999975
No 33
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.84 E-value=4.5e-08 Score=71.11 Aligned_cols=92 Identities=12% Similarity=0.086 Sum_probs=79.5
Q ss_pred HHHHhhhcCCCCCCcCHHHHhcccC----CCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhcCCcHHHHHHHHHHh
Q psy11348 25 YGQYLHLDKNHNGVLSKEELAAYGT----GTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLENKHEPQALQYLFRFL 99 (160)
Q Consensus 25 ~~~F~~lD~d~~G~I~~~el~~~~~----~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~~~~~~~l~~~F~~~ 99 (160)
.+.|..+|. +.|.|+..+|..+++ ...++.++...|+.+|. ++|.|+..+.+.++.......+.+.+..+++.+
T Consensus 59 ~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~ 137 (160)
T COG5126 59 NKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEY 137 (160)
T ss_pred HHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhc
Confidence 356777888 999999999998753 34568899999999985 899999999999998776667778999999999
Q ss_pred ccCCCCccCHHHHHHHHH
Q psy11348 100 DIKHQGYLDTFTLFYFFK 117 (160)
Q Consensus 100 D~d~dG~I~~~el~~~~~ 117 (160)
|.|++|+|+.+++...+.
T Consensus 138 d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 138 DEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred CCCCCceEeHHHHHHHHh
Confidence 999999999999988653
No 34
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.82 E-value=2e-08 Score=66.26 Aligned_cols=64 Identities=13% Similarity=0.248 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhhc-CCCCC-CcCHHHHhccc--------CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHh
Q psy11348 19 TSALRVYGQYLHLD-KNHNG-VLSKEELAAYG--------TGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLS 82 (160)
Q Consensus 19 ~~~~~l~~~F~~lD-~d~~G-~I~~~el~~~~--------~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~ 82 (160)
..+..|.++|+.+| ++++| .|+.+||+.++ +...++.++.++++.+|. ++|.|+|++|+.++..
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 35788999999998 89999 59999999763 334578889999999985 7899999999887754
No 35
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.81 E-value=2.4e-08 Score=65.90 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhhcC-CC-CCCcCHHHHhccc------CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhh
Q psy11348 19 TSALRVYGQYLHLDK-NH-NGVLSKEELAAYG------TGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSL 83 (160)
Q Consensus 19 ~~~~~l~~~F~~lD~-d~-~G~I~~~el~~~~------~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~ 83 (160)
+.+..|-..|+++|. ++ +|+|+.+||+.++ +..+++.++.++++.+|. ++|.|+|+||+.++..+
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 457788899999998 77 8999999999875 445688999999999985 88999999999887653
No 36
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.81 E-value=1.6e-08 Score=67.11 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhc-CCCCC-CcCHHHHhcccC--------CCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhh
Q psy11348 20 SALRVYGQYLHLD-KNHNG-VLSKEELAAYGT--------GTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSL 83 (160)
Q Consensus 20 ~~~~l~~~F~~lD-~d~~G-~I~~~el~~~~~--------~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~ 83 (160)
-+..|+++|+.+| ++++| .|+.+||+.++. ..+++..+.+++..+|. ++|.|+|.+|+.++..+
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 3577999999997 99999 599999998752 13477889999999985 78999999999877653
No 37
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.79 E-value=2.6e-08 Score=65.32 Aligned_cols=66 Identities=14% Similarity=0.263 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhhcC--CCCCCcCHHHHhccc----CCC----CCHHHHHHHHHhhcC-CCCccchHHHHHHHHhh
Q psy11348 18 ATSALRVYGQYLHLDK--NHNGVLSKEELAAYG----TGT----LTPVFIERVFQECLT-FETQMDYKTYLDFVLSL 83 (160)
Q Consensus 18 ~~~~~~l~~~F~~lD~--d~~G~I~~~el~~~~----~~~----~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~ 83 (160)
++++..++.+|..+|+ |++|.|+.++|..++ +.. ++...+.+++..++. ++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4678899999999999 899999999999864 212 347899999999985 78999999999987653
No 38
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.78 E-value=1.9e-08 Score=62.13 Aligned_cols=58 Identities=14% Similarity=0.217 Sum_probs=49.2
Q ss_pred HHHHhhhcCCCCCCcCHHHHhccc-CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHh
Q psy11348 25 YGQYLHLDKNHNGVLSKEELAAYG-TGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLS 82 (160)
Q Consensus 25 ~~~F~~lD~d~~G~I~~~el~~~~-~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~ 82 (160)
+++|..+|++++|.|+.+|+..++ ..+.+...+.+++..++. ++|.|+|.+|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 568999999999999999999874 224588899999999985 7899999999987764
No 39
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.77 E-value=2.2e-08 Score=66.64 Aligned_cols=63 Identities=10% Similarity=0.271 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhhcC-CC-CCCcCHHHHhccc--------CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHh
Q psy11348 20 SALRVYGQYLHLDK-NH-NGVLSKEELAAYG--------TGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLS 82 (160)
Q Consensus 20 ~~~~l~~~F~~lD~-d~-~G~I~~~el~~~~--------~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~ 82 (160)
.+..|..+|..+|. |+ +|.|+.+||+.++ +..++..++..++..++. ++|.|+|++|+.++..
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 36778999999997 97 6999999999764 225678899999999985 7899999999887754
No 40
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.76 E-value=2.3e-08 Score=65.62 Aligned_cols=65 Identities=9% Similarity=0.146 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcc--CCCCccCHHHHHHHHHH-HHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 90 QALQYLFRFLDI--KHQGYLDTFTLFYFFKA-ISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 90 ~~l~~~F~~~D~--d~dG~I~~~el~~~~~~-~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
..++.+|..||. |++|+|+.++|+.+++. ++..++ ..+ ..+.+..|+..++.+++|.|+|++|+.
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~----~~~-~~~ei~~i~~~~d~~~~g~I~f~eF~~ 75 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLK----NQK-DPEAVDKIMKDLDVNKDGKVDFQEFLV 75 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhcc----CCC-CHHHHHHHHHHhccCCCCcCcHHHHHH
Confidence 468899999999 89999999999999976 332221 112 344568899999999999999999975
No 41
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.76 E-value=3.9e-08 Score=65.02 Aligned_cols=66 Identities=12% Similarity=0.200 Sum_probs=51.4
Q ss_pred HHHHHHHHH-hccCCCC-ccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 90 QALQYLFRF-LDIKHQG-YLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 90 ~~l~~~F~~-~D~d~dG-~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
..+..+|+. +|+||+| +||.+||+.++.......-. ... .+..++++++.++.++||.|+|+||++
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~---~~~-~~~~~~~ll~~~D~d~DG~I~f~EF~~ 76 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTK---NQK-DPGVLDRMMKKLDLNSDGQLDFQEFLN 76 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhc---CCC-CHHHHHHHHHHcCCCCCCcCcHHHHHH
Confidence 468889999 7889986 99999999999876433211 112 234568899999999999999999975
No 42
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.75 E-value=1.1e-08 Score=63.14 Aligned_cols=56 Identities=18% Similarity=0.262 Sum_probs=47.4
Q ss_pred HHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 93 QYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 93 ~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
+.+|+.+|.|++|.|+.+|++.+++.. |. + .+.+.+++..++.+++|.|+|++|+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-------g~---~-~~~~~~i~~~~d~~~~g~i~~~ef~~ 57 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-------GL---P-RSVLAQIWDLADTDKDGKLDKEEFAI 57 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-------CC---C-HHHHHHHHHHhcCCCCCcCCHHHHHH
Confidence 568999999999999999999998753 32 2 34468899999999999999999975
No 43
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.75 E-value=8.9e-09 Score=67.94 Aligned_cols=63 Identities=8% Similarity=0.061 Sum_probs=50.2
Q ss_pred HHHHHHHHhcc-CC-CCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 91 ALQYLFRFLDI-KH-QGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 91 ~l~~~F~~~D~-d~-dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
.+..+|+.||. || +|+|+.+||+.+++... ..|. .++.+ .+.++++.++.+++|+|+|+||++
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~----~lg~-k~t~~-ev~~m~~~~D~d~dG~Idf~EFv~ 75 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKEL----TIGS-KLQDA-EIAKLMEDLDRNKDQEVNFQEYVT 75 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHH----hcCC-CCCHH-HHHHHHHHhcCCCCCCCcHHHHHH
Confidence 57888999999 78 99999999999986421 1232 23444 468999999999999999999975
No 44
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.71 E-value=6e-08 Score=67.16 Aligned_cols=63 Identities=21% Similarity=0.179 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHhhhcCCCCCCcCHHHHhcccCCCCCHHHHHHHHHhhcC-CCCccchHHHHHHH
Q psy11348 17 SATSALRVYGQYLHLDKNHNGVLSKEELAAYGTGTLTPVFIERVFQECLT-FETQMDYKTYLDFV 80 (160)
Q Consensus 17 ~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~ 80 (160)
.......+.-+|..+|.|+||.|+.+||..+. ....+..+.+++..+|. ++|.||++||...+
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~-l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR-LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH-ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 44566778889999999999999999999765 33456677778887774 67788888887766
No 45
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.69 E-value=3.3e-08 Score=66.03 Aligned_cols=59 Identities=12% Similarity=0.178 Sum_probs=50.1
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 90 QALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 90 ~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
..++.+|+.||.|++|+|+.++++.+++.. | ++. +.+.+|+..++.+++|.|+|++|+.
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-------~---~~~-~ev~~i~~~~d~~~~g~I~~~eF~~ 68 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKS-------G---LPQ-TLLAKIWNLADIDNDGELDKDEFAL 68 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-------C---CCH-HHHHHHHHHhcCCCCCCcCHHHHHH
Confidence 478999999999999999999999998752 3 223 3467899999999999999999975
No 46
>KOG0377|consensus
Probab=98.68 E-value=1.8e-07 Score=77.12 Aligned_cols=131 Identities=17% Similarity=0.245 Sum_probs=93.1
Q ss_pred HHHHHHHhhhcCCCCCCcCHHHHhccc----CCCCCHHHHH-HHHHhhcCCCCccchHHHHHHHHh---hhc-CC-----
Q psy11348 22 LRVYGQYLHLDKNHNGVLSKEELAAYG----TGTLTPVFIE-RVFQECLTFETQMDYKTYLDFVLS---LEN-KH----- 87 (160)
Q Consensus 22 ~~l~~~F~~lD~d~~G~I~~~el~~~~----~~~~~~~~v~-~i~~~~d~~~g~I~f~eF~~~~~~---~~~-~~----- 87 (160)
..|...|...|.+++|+|+......+. +.++|=..+. ++.. ...+|.+.|...+..+.. .+. ..
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~--~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLAN--GSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccC--CCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 345678999999999999999988763 4444421111 1111 125678888888775432 111 00
Q ss_pred ---cHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 88 ---EPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 88 ---~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
....+.-+|+++|.|++|.||.+|++..++=++..|. -+++.++ +.++-+.|+.++||+|.+-||..
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~----~~i~~~~-i~~la~~mD~NkDG~IDlNEfLe 611 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMN----GAISDDE-ILELARSMDLNKDGKIDLNEFLE 611 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcC----CCcCHHH-HHHHHHhhccCCCCcccHHHHHH
Confidence 1346888999999999999999999998876665553 2455555 57899999999999999999864
No 47
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.65 E-value=9.8e-08 Score=63.08 Aligned_cols=65 Identities=17% Similarity=0.328 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhh-hcCCCCC-CcCHHHHhcccCC--------CCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhh
Q psy11348 19 TSALRVYGQYLH-LDKNHNG-VLSKEELAAYGTG--------TLTPVFIERVFQECLT-FETQMDYKTYLDFVLSL 83 (160)
Q Consensus 19 ~~~~~l~~~F~~-lD~d~~G-~I~~~el~~~~~~--------~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~ 83 (160)
..+..|..+|+. .|++|+| .|+.+||+.+++. ..++..+.+++..+|. ++|.|+|+||+.++..+
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 457889999999 8899987 9999999987532 3356789999999885 88999999999877643
No 48
>KOG0034|consensus
Probab=98.59 E-value=1e-06 Score=65.76 Aligned_cols=107 Identities=9% Similarity=0.059 Sum_probs=83.6
Q ss_pred ccCCCCHHHHHHHH---------HHHhhhcCCCCCC-cCHHHHhcccCC----CCCHHHHHHHHHhhcC-CCCccchHHH
Q psy11348 12 EKNWFSATSALRVY---------GQYLHLDKNHNGV-LSKEELAAYGTG----TLTPVFIERVFQECLT-FETQMDYKTY 76 (160)
Q Consensus 12 ~~~~f~~~~~~~l~---------~~F~~lD~d~~G~-I~~~el~~~~~~----~~~~~~v~~i~~~~d~-~~g~I~f~eF 76 (160)
...+++++|++.|. .+++.+|.+++|. |+..++...+.+ .....-+.-.|+.+|. ++|.|+.+++
T Consensus 47 ~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel 126 (187)
T KOG0034|consen 47 GDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREEL 126 (187)
T ss_pred ccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHH
Confidence 56788899988887 5678899999999 999999987533 2223356778888885 8899999999
Q ss_pred HHHHHhhhc-CCc------HHHHHHHHHHhccCCCCccCHHHHHHHHHH
Q psy11348 77 LDFVLSLEN-KHE------PQALQYLFRFLDIKHQGYLDTFTLFYFFKA 118 (160)
Q Consensus 77 ~~~~~~~~~-~~~------~~~l~~~F~~~D~d~dG~I~~~el~~~~~~ 118 (160)
..++..+-. ... .+-+...|..+|.|+||+|+.+|++.++..
T Consensus 127 ~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 127 KQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 988876433 222 124778899999999999999999998753
No 49
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.59 E-value=7.2e-08 Score=57.47 Aligned_cols=60 Identities=18% Similarity=0.296 Sum_probs=49.4
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhcC
Q psy11348 92 LQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLIDW 160 (160)
Q Consensus 92 l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~~ 160 (160)
++.+|+.+|.+++|.|+..++..+++.++ . ......+..+++.++++++|.|+|++|.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~-------~--~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG-------E--GLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC-------C--CCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 57789999999999999999999887543 1 223555678999999999999999999763
No 50
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.57 E-value=7e-08 Score=50.48 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=25.0
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHH
Q psy11348 92 LQYLFRFLDIKHQGYLDTFTLFYFFKA 118 (160)
Q Consensus 92 l~~~F~~~D~d~dG~I~~~el~~~~~~ 118 (160)
++.+|+.+|+|+||+|+.+|++.++++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 688999999999999999999998875
No 51
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.52 E-value=5.2e-07 Score=53.65 Aligned_cols=50 Identities=16% Similarity=0.292 Sum_probs=38.0
Q ss_pred CCccchHHHHHHHHhhhcC-CcHHHHHHHHHHhccCCCCccCHHHHHHHHH
Q psy11348 68 ETQMDYKTYLDFVLSLENK-HEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 117 (160)
Q Consensus 68 ~g~I~f~eF~~~~~~~~~~-~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~ 117 (160)
+|.|+.++|..++..+... .++..+..+|+.+|.|++|+|+.+|+..++.
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 5788888888887544333 5566788888888888888888888887765
No 52
>PLN02964 phosphatidylserine decarboxylase
Probab=98.49 E-value=6.2e-07 Score=77.95 Aligned_cols=117 Identities=16% Similarity=0.194 Sum_probs=81.6
Q ss_pred HHhhhcCCCCCCcCHHHHhcccCC---CCCH---HHHHHHHHhhcC-CCCccchHHHHHHHHhhh-cCCcHHH---HHHH
Q psy11348 27 QYLHLDKNHNGVLSKEELAAYGTG---TLTP---VFIERVFQECLT-FETQMDYKTYLDFVLSLE-NKHEPQA---LQYL 95 (160)
Q Consensus 27 ~F~~lD~d~~G~I~~~el~~~~~~---~~~~---~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~-~~~~~~~---l~~~ 95 (160)
.|..+|++ .++.+++...... .++. .++.+.|..+|. ++|.+ +... +.++. ...++.. ++.+
T Consensus 112 ~~~~~~~~---~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~i---lrslG~~~pte~e~~fi~~m 184 (644)
T PLN02964 112 RISVFETN---RLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGSI---FVSCSIEDPVETERSFARRI 184 (644)
T ss_pred EEEEEecC---CCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHHH---HHHhCCCCCCHHHHHHHHHH
Confidence 56777766 7888888865432 2333 345566777765 67776 3332 33332 1223333 7999
Q ss_pred HHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 96 FRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 96 F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
|+.+|.|++|.|+.+||..++..++. .. .++.+.++|+.+|.+++|.||++||++
T Consensus 185 f~~~D~DgdG~IdfdEFl~lL~~lg~--------~~-seEEL~eaFk~fDkDgdG~Is~dEL~~ 239 (644)
T PLN02964 185 LAIVDYDEDGQLSFSEFSDLIKAFGN--------LV-AANKKEELFKAADLNGDGVVTIDELAA 239 (644)
T ss_pred HHHhCCCCCCeEcHHHHHHHHHHhcc--------CC-CHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence 99999999999999999998875431 12 344568999999999999999999975
No 53
>KOG4666|consensus
Probab=98.44 E-value=2.8e-07 Score=73.31 Aligned_cols=114 Identities=15% Similarity=0.155 Sum_probs=85.9
Q ss_pred CCCCcCHHHHhcccCCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhc-CCcHHHHHHHHHHhccCCCCccCHHHH
Q psy11348 35 HNGVLSKEELAAYGTGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLEN-KHEPQALQYLFRFLDIKHQGYLDTFTL 112 (160)
Q Consensus 35 ~~G~I~~~el~~~~~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~-~~~~~~l~~~F~~~D~d~dG~I~~~el 112 (160)
+.|.|...|+...+..+.+ .-+..+|..+|. ++|.+||.|.+..+..++. ..++.-++.+|++|+.+-||+++.++|
T Consensus 240 kg~~igi~efa~~l~vpvs-d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~l 318 (412)
T KOG4666|consen 240 KGPDIGIVEFAVNLRVPVS-DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHIL 318 (412)
T ss_pred cCCCcceeEeeeeeecchh-hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHH
Confidence 3344555555544444333 457788888884 7899999999987776665 456788999999999999999999988
Q ss_pred HHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 113 FYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
--+++. .+|+..+. +.-+|+.++..++|+|+|.+|++
T Consensus 319 s~ilq~------~lgv~~l~----v~~lf~~i~q~d~~ki~~~~f~~ 355 (412)
T KOG4666|consen 319 SLILQV------VLGVEVLR----VPVLFPSIEQKDDPKIYASNFRK 355 (412)
T ss_pred HHHHHH------hcCcceee----ccccchhhhcccCcceeHHHHHH
Confidence 877653 25655343 35589999999999999999986
No 54
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.41 E-value=2.4e-07 Score=49.04 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=24.2
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHH
Q psy11348 91 ALQYLFRFLDIKHQGYLDTFTLFYFFK 117 (160)
Q Consensus 91 ~l~~~F~~~D~d~dG~I~~~el~~~~~ 117 (160)
+++.+|+.+|.|++|+|+.+||+.+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 468899999999999999999999987
No 55
>KOG0040|consensus
Probab=98.41 E-value=2.9e-06 Score=78.18 Aligned_cols=134 Identities=17% Similarity=0.229 Sum_probs=100.8
Q ss_pred cCCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhccc---CC-------CCCHHHHHHHHHhhcC-CCCccchHHHHHHHH
Q psy11348 13 KNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAYG---TG-------TLTPVFIERVFQECLT-FETQMDYKTYLDFVL 81 (160)
Q Consensus 13 ~~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~---~~-------~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~ 81 (160)
.+.-|.+++..+..+|..||++.+|+++..+|..++ |. +-|++..++++..+|. .+|.|+..+|++||.
T Consensus 2244 ~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2244 HNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred cCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHH
Confidence 356788999999999999999999999999999874 22 2246789999999985 789999999999998
Q ss_pred hhh--cCCcHHHHHHHHHHhccCCCCccCHHHHHHHH-HHHHHHHhhcCCCCCChHhHHHHHHHhcCC----CCCCCeeh
Q psy11348 82 SLE--NKHEPQALQYLFRFLDIKHQGYLDTFTLFYFF-KAISKQITESEQEPINFEDVKDEIFDMAKP----KDPSRITL 154 (160)
Q Consensus 82 ~~~--~~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~-~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~----~~~g~it~ 154 (160)
..+ .......+.-+|+-+|. +.-||++.++..-+ ++.. +=.+..|-..+++ ...+.+.|
T Consensus 2324 ~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~ltreqa-------------efc~s~m~~~~e~~~~~s~q~~l~y 2389 (2399)
T KOG0040|consen 2324 SKETENILSSEEIEDAFRALDA-GKPYVTKEELYQNLTREQA-------------EFCMSKMKPYAETSSGRSDQVALDY 2389 (2399)
T ss_pred hcccccccchHHHHHHHHHhhc-CCccccHHHHHhcCCHHHH-------------HHHHHHhhhhcccccCCCccccccH
Confidence 743 33334589999999999 99999999885432 2111 1123344444544 34567899
Q ss_pred hhhhcC
Q psy11348 155 QDLIDW 160 (160)
Q Consensus 155 ~eF~~~ 160 (160)
.+|.++
T Consensus 2390 ~dfv~s 2395 (2399)
T KOG0040|consen 2390 KDFVNS 2395 (2399)
T ss_pred HHHHHH
Confidence 999863
No 56
>KOG0028|consensus
Probab=98.37 E-value=5.8e-06 Score=59.69 Aligned_cols=94 Identities=13% Similarity=0.108 Sum_probs=78.1
Q ss_pred HHHHHhhhcCCCCCCcCHHHHhcc----cCCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhcCCcHHHHHHHHHH
Q psy11348 24 VYGQYLHLDKNHNGVLSKEELAAY----GTGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLENKHEPQALQYLFRF 98 (160)
Q Consensus 24 l~~~F~~lD~d~~G~I~~~el~~~----~~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~~~~~~~l~~~F~~ 98 (160)
+.++-...|++++|.|+.++|... ++..-|..++.+.|...|. ++|.|++.+|..++..+...-+.+.++..-.-
T Consensus 71 i~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeE 150 (172)
T KOG0028|consen 71 ILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEE 150 (172)
T ss_pred HHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHH
Confidence 344455689999999999999975 3334488999999999975 89999999998877766555566789999999
Q ss_pred hccCCCCccCHHHHHHHHH
Q psy11348 99 LDIKHQGYLDTFTLFYFFK 117 (160)
Q Consensus 99 ~D~d~dG~I~~~el~~~~~ 117 (160)
+|+|++|-|+.+|+-.+++
T Consensus 151 Ad~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 151 ADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred hcccccccccHHHHHHHHh
Confidence 9999999999999988765
No 57
>PF14658 EF-hand_9: EF-hand domain
Probab=98.37 E-value=4.3e-07 Score=56.34 Aligned_cols=57 Identities=12% Similarity=0.320 Sum_probs=48.6
Q ss_pred HHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCC-CCeehhhhhc
Q psy11348 95 LFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDP-SRITLQDLID 159 (160)
Q Consensus 95 ~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~-g~it~~eF~~ 159 (160)
+|+.||.++.|.|....|..++++++.+ .+.+..++.+..++||++. |.|+++.|+.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~--------~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~ 60 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGR--------SPEESELQDLINELDPEGRDGSVNFDTFLA 60 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCC--------CCcHHHHHHHHHHhCCCCCCceEeHHHHHH
Confidence 7999999999999999999999976432 2345567999999999987 9999999975
No 58
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.32 E-value=3.4e-06 Score=50.00 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=32.6
Q ss_pred HHHHHhhhcCCCCCCcCHHHHhccc---CCCCCHHHHHHHHHhhcC-CCCccchHHHHHH
Q psy11348 24 VYGQYLHLDKNHNGVLSKEELAAYG---TGTLTPVFIERVFQECLT-FETQMDYKTYLDF 79 (160)
Q Consensus 24 l~~~F~~lD~d~~G~I~~~el~~~~---~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~ 79 (160)
+..+|..+|.+++|.|+..++..++ +...+...+.+++..++. ++|.|++++|+.+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 3455666666666666666666543 334455556666666553 4556666666553
No 59
>KOG0041|consensus
Probab=98.32 E-value=1.1e-06 Score=65.71 Aligned_cols=60 Identities=8% Similarity=0.253 Sum_probs=49.8
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhh
Q psy11348 90 QALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLI 158 (160)
Q Consensus 90 ~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~ 158 (160)
..+..+|+.||.+.||||+..||+.++..++.. +.---+..|+++++.+.+|+|||-+|.
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgap---------QTHL~lK~mikeVded~dgklSfrefl 158 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAP---------QTHLGLKNMIKEVDEDFDGKLSFREFL 158 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCc---------hhhHHHHHHHHHhhcccccchhHHHHH
Confidence 357888999999999999999999988765433 333346789999999999999999985
No 60
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.32 E-value=1.1e-06 Score=52.27 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=41.9
Q ss_pred CCCCcCHHHHhccc---CCC-CCHHHHHHHHHhhcC-CCCccchHHHHHHHH
Q psy11348 35 HNGVLSKEELAAYG---TGT-LTPVFIERVFQECLT-FETQMDYKTYLDFVL 81 (160)
Q Consensus 35 ~~G~I~~~el~~~~---~~~-~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~ 81 (160)
++|.|+.++|+.++ +.. +++.++..||..+|. ++|.|+|+||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 47999999999875 566 899999999999995 899999999999875
No 61
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.31 E-value=2.7e-06 Score=55.94 Aligned_cols=64 Identities=9% Similarity=0.259 Sum_probs=49.7
Q ss_pred HHHHHHHHhccC--CCCccCHHHHHHHHHH-HHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 91 ALQYLFRFLDIK--HQGYLDTFTLFYFFKA-ISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 91 ~l~~~F~~~D~d--~dG~I~~~el~~~~~~-~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
.+...|+-|+.. ++|+|+.+||+.+++. ++..++ .. ..++.+++|+..++.+++|.|+|++|+.
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t----~~-~~~~~v~~i~~~~D~d~dG~I~f~eF~~ 75 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLK----KE-KNQKAIDKIFEDLDTNQDGQLSFEEFLV 75 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhc----cC-CCHHHHHHHHHHcCCCCCCcCcHHHHHH
Confidence 577889999876 4899999999999974 333332 01 1245568999999999999999999975
No 62
>KOG2643|consensus
Probab=98.28 E-value=5.1e-06 Score=68.42 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=80.8
Q ss_pred HHHHhhhcCCCCCCcCHHHHhccc---------CC--------------CCCHHHHHHHHHhhcCCCCccchHHHHHHHH
Q psy11348 25 YGQYLHLDKNHNGVLSKEELAAYG---------TG--------------TLTPVFIERVFQECLTFETQMDYKTYLDFVL 81 (160)
Q Consensus 25 ~~~F~~lD~d~~G~I~~~el~~~~---------~~--------------~~~~~~v~~i~~~~d~~~g~I~f~eF~~~~~ 81 (160)
+-+|..||.|+||-|+.+||.... +. ..++.-+.++|.. .+++.+++++|+.|+.
T Consensus 236 ~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~--rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 236 RIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGK--RGNGKLSIDEFLKFQE 313 (489)
T ss_pred eeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhcc--CCCccccHHHHHHHHH
Confidence 356899999999999999988531 10 1112222233321 3788999999999998
Q ss_pred hhhcCCcHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 82 SLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 82 ~~~~~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
.+. .+-++.=|.-+|...+|.|+..++..++-.. .+.....-.-.+..+-+..+.+ +-.||++||+.
T Consensus 314 ~Lq----~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~------a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~ 380 (489)
T KOG2643|consen 314 NLQ----EEILELEFERFDKGDSGAISEVDFAELLLAY------AGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKA 380 (489)
T ss_pred HHH----HHHHHHHHHHhCcccccccCHHHHHHHHHHH------cccchHhHHHHHHHHHHhccCC-CCCcCHHHHHH
Confidence 764 2456777999999999999999999886432 1211111122334455555554 56799999863
No 63
>KOG0041|consensus
Probab=98.28 E-value=4.9e-06 Score=62.23 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=81.0
Q ss_pred hhhhhccCCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhccc---CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHh
Q psy11348 7 SVDRLEKNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAYG---TGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLS 82 (160)
Q Consensus 7 ~~~~~~~~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~---~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~ 82 (160)
-..+.+=.+||..+|+.++..|.++|.+.||+|+..||+..+ +.+-|..-+..++..+|. .+|.|+|-+|+-....
T Consensus 84 ~n~yteF~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 84 FNVYTEFSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 355677779999999999999999999999999999999874 555577888999999985 8999999999775543
Q ss_pred hhc--CCcHHHHHHHHHH--hccCCCCccCHHHHHH
Q psy11348 83 LEN--KHEPQALQYLFRF--LDIKHQGYLDTFTLFY 114 (160)
Q Consensus 83 ~~~--~~~~~~l~~~F~~--~D~d~dG~I~~~el~~ 114 (160)
... .....-+..+=+. .|+-.-|+.....+-+
T Consensus 164 aaagEL~~ds~~~~LAr~~eVDVskeGV~GAknFFe 199 (244)
T KOG0041|consen 164 AAAGELQEDSGLLRLARLSEVDVSKEGVSGAKNFFE 199 (244)
T ss_pred HhccccccchHHHHHHHhcccchhhhhhhhHHHHHH
Confidence 221 1112223333344 7888888877665543
No 64
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.26 E-value=4e-06 Score=55.16 Aligned_cols=64 Identities=17% Similarity=0.315 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhhcCC--CCCCcCHHHHhcccC----CCCC----HHHHHHHHHhhcC-CCCccchHHHHHHHHh
Q psy11348 19 TSALRVYGQYLHLDKN--HNGVLSKEELAAYGT----GTLT----PVFIERVFQECLT-FETQMDYKTYLDFVLS 82 (160)
Q Consensus 19 ~~~~~l~~~F~~lD~d--~~G~I~~~el~~~~~----~~~~----~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~ 82 (160)
..+..+...|+.++.. ++|.|+.+||+.++. ..++ +.+++.++..+|. ++|.|+|++|+.++..
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 3567788889988866 478999999998752 1234 7788888888875 7788999999887764
No 65
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.16 E-value=2.6e-06 Score=42.93 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=22.2
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHH
Q psy11348 92 LQYLFRFLDIKHQGYLDTFTLFYFF 116 (160)
Q Consensus 92 l~~~F~~~D~d~dG~I~~~el~~~~ 116 (160)
++.+|+.+|.|+||.|+.+|++.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4679999999999999999998763
No 66
>KOG0036|consensus
Probab=98.16 E-value=1.2e-05 Score=65.86 Aligned_cols=92 Identities=14% Similarity=0.185 Sum_probs=60.5
Q ss_pred HHHHHHhhhcCCCCCCcCHHHHhcccCCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhcCCcHHHHHHHHHHhcc
Q psy11348 23 RVYGQYLHLDKNHNGVLSKEELAAYGTGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDI 101 (160)
Q Consensus 23 ~l~~~F~~lD~d~~G~I~~~el~~~~~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~~~~~~~l~~~F~~~D~ 101 (160)
.....|...|.|++|.++.+||+.++.. .+..+.++|+.+|. ++|.|+-+|--.++...--.-..+++..+|+..|+
T Consensus 52 ~~~~l~~~~d~~~dg~vDy~eF~~Y~~~--~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~ 129 (463)
T KOG0036|consen 52 AAKMLFSAMDANRDGRVDYSEFKRYLDN--KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDK 129 (463)
T ss_pred HHHHHHHhcccCcCCcccHHHHHHHHHH--hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhcc
Confidence 3445666777777777777777776543 35567777777764 67777777776666544332334456667777777
Q ss_pred CCCCccCHHHHHHHH
Q psy11348 102 KHQGYLDTFTLFYFF 116 (160)
Q Consensus 102 d~dG~I~~~el~~~~ 116 (160)
+|++.|+.+|.+.++
T Consensus 130 ~g~~~I~~~e~rd~~ 144 (463)
T KOG0036|consen 130 DGKATIDLEEWRDHL 144 (463)
T ss_pred CCCeeeccHHHHhhh
Confidence 777777777777664
No 67
>KOG2643|consensus
Probab=98.12 E-value=1.5e-05 Score=65.77 Aligned_cols=135 Identities=14% Similarity=0.224 Sum_probs=90.9
Q ss_pred cCCCCHHHHHHHH---------HHHhhhcCCCCCCcCHHHHhccc-CC-CCC----HHHHHHHHHhhcCCCCccchHHHH
Q psy11348 13 KNWFSATSALRVY---------GQYLHLDKNHNGVLSKEELAAYG-TG-TLT----PVFIERVFQECLTFETQMDYKTYL 77 (160)
Q Consensus 13 ~~~f~~~~~~~l~---------~~F~~lD~d~~G~I~~~el~~~~-~~-~~~----~~~v~~i~~~~d~~~g~I~f~eF~ 77 (160)
+..++.+++.+.+ --|..+|+..+|.|+..++...+ .. ..+ .....++-+.+...+..|+++||.
T Consensus 300 ~~kLs~deF~~F~e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~gISl~Ef~ 379 (489)
T KOG2643|consen 300 NGKLSIDEFLKFQENLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKGISLQEFK 379 (489)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCCcCHHHHH
Confidence 3445556555544 45889999999999999999753 11 122 234555555554446789999999
Q ss_pred HHHHhhhcCCcHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhh
Q psy11348 78 DFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDL 157 (160)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF 157 (160)
.|..-+....+-+..-.+|.+ ..+-|+..+++++.+.. .|.+ + .+.+++-+|..+|.++||.||++||
T Consensus 380 ~Ff~Fl~~l~dfd~Al~fy~~----Ag~~i~~~~f~raa~~v------tGve-L-SdhVvdvvF~IFD~N~Dg~LS~~EF 447 (489)
T KOG2643|consen 380 AFFRFLNNLNDFDIALRFYHM----AGASIDEKTFQRAAKVV------TGVE-L-SDHVVDVVFTIFDENNDGTLSHKEF 447 (489)
T ss_pred HHHHHHhhhhHHHHHHHHHHH----cCCCCCHHHHHHHHHHh------cCcc-c-ccceeeeEEEEEccCCCCcccHHHH
Confidence 887665554443333333333 57889999999887642 2321 2 2347788889999999999999999
Q ss_pred hc
Q psy11348 158 ID 159 (160)
Q Consensus 158 ~~ 159 (160)
+.
T Consensus 448 l~ 449 (489)
T KOG2643|consen 448 LA 449 (489)
T ss_pred HH
Confidence 74
No 68
>PF14658 EF-hand_9: EF-hand domain
Probab=98.10 E-value=7.8e-06 Score=50.74 Aligned_cols=57 Identities=16% Similarity=0.292 Sum_probs=49.2
Q ss_pred HHHhhhcCCCCCCcCHHHHhccc---CC-CCCHHHHHHHHHhhcC-C-CCccchHHHHHHHHh
Q psy11348 26 GQYLHLDKNHNGVLSKEELAAYG---TG-TLTPVFIERVFQECLT-F-ETQMDYKTYLDFVLS 82 (160)
Q Consensus 26 ~~F~~lD~d~~G~I~~~el~~~~---~~-~~~~~~v~~i~~~~d~-~-~g~I~f~eF~~~~~~ 82 (160)
.+|..+|+++.|.|...++..++ +. .+++..++.+.+.+|. + +|.|+|+.|+..|..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 47999999999999999999764 44 7789999999999985 4 499999999998864
No 69
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.01 E-value=3e-06 Score=44.20 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=19.5
Q ss_pred HHHHHhhhcCCCCCCcCHHHHhcc
Q psy11348 24 VYGQYLHLDKNHNGVLSKEELAAY 47 (160)
Q Consensus 24 l~~~F~~lD~d~~G~I~~~el~~~ 47 (160)
+..+|+.+|+|+||+|+.+||..+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~ 25 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEM 25 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHH
Confidence 567888888888888888888764
No 70
>KOG4251|consensus
Probab=97.91 E-value=1.6e-05 Score=61.35 Aligned_cols=88 Identities=13% Similarity=0.117 Sum_probs=57.1
Q ss_pred cchHHHHHHHHhhhc-CCcHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCC
Q psy11348 71 MDYKTYLDFVLSLEN-KHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDP 149 (160)
Q Consensus 71 I~f~eF~~~~~~~~~-~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~ 149 (160)
++-+||+.|+..-.+ ..-..-++.+-+.+|.|||..+|..|+-.......+......++..-.++...++-..|+.++|
T Consensus 216 lteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhD 295 (362)
T KOG4251|consen 216 LTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHD 295 (362)
T ss_pred hhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCc
Confidence 455888777754222 2223456777899999999999999987665333222221112222235556677778999999
Q ss_pred CCeehhhhh
Q psy11348 150 SRITLQDLI 158 (160)
Q Consensus 150 g~it~~eF~ 158 (160)
|.+|++|+.
T Consensus 296 GivTaeELe 304 (362)
T KOG4251|consen 296 GIVTAEELE 304 (362)
T ss_pred cceeHHHHH
Confidence 999998864
No 71
>KOG0030|consensus
Probab=97.85 E-value=4.2e-05 Score=54.08 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=48.8
Q ss_pred HHHhhhcCCCCCCcCHHHHhcc---cCCCCCHHHHHHHHHhhcCCCCccchHHHHHHHH
Q psy11348 26 GQYLHLDKNHNGVLSKEELAAY---GTGTLTPVFIERVFQECLTFETQMDYKTYLDFVL 81 (160)
Q Consensus 26 ~~F~~lD~d~~G~I~~~el~~~---~~~~~~~~~v~~i~~~~d~~~g~I~f~eF~~~~~ 81 (160)
+-.+.+|++++|.|...||+.+ +|-.+++.+++.+++-...++|.|+|+.|++.+.
T Consensus 92 egLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 92 EGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQEDSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccccccCCcCcHHHHHHHHh
Confidence 4567899999999999999987 4667899999999987767899999999998654
No 72
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.83 E-value=1e-05 Score=40.71 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.0
Q ss_pred HHHHHhhhcCCCCCCcCHHHHhcc
Q psy11348 24 VYGQYLHLDKNHNGVLSKEELAAY 47 (160)
Q Consensus 24 l~~~F~~lD~d~~G~I~~~el~~~ 47 (160)
|.+.|..+|+|+||.|+.+|+.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 467899999999999999999863
No 73
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.82 E-value=3.2e-05 Score=63.99 Aligned_cols=49 Identities=22% Similarity=0.425 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 89 PQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 89 ~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
...++.+|+++|.||||+|+.+|+.. +..+|+.++.+++|.|+++||+.
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~----------------------~~~~F~~~D~d~DG~Is~eEf~~ 381 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG----------------------SDAVFDALDLNHDGKITPEEMRA 381 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH----------------------HHHHHHHhCCCCCCCCcHHHHHH
Confidence 35689999999999999999999831 25689999999999999999975
No 74
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.81 E-value=2.8e-05 Score=52.79 Aligned_cols=65 Identities=11% Similarity=0.209 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCcCHHHHhccc-CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHH
Q psy11348 16 FSATSALRVYGQYLHLDKNHNGVLSKEELAAYG-TGTLTPVFIERVFQECLT-FETQMDYKTYLDFVL 81 (160)
Q Consensus 16 f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~-~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~ 81 (160)
++.+|.+.+...|..+|. ++|.|+-...+.++ ..+++...+.+|+...|. ++|.++++||+-+|.
T Consensus 4 ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 4 LSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp -SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 566788888889988885 67899988888764 446788888888888885 788899999877654
No 75
>KOG0031|consensus
Probab=97.81 E-value=7.6e-05 Score=53.70 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=25.9
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHHH
Q psy11348 90 QALQYLFRFLDIKHQGYLDTFTLFYFFKAIS 120 (160)
Q Consensus 90 ~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~ 120 (160)
+.++.||.++|.|+||+|..++|+.++.++|
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlG 62 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLG 62 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcC
Confidence 5688889999999999999999988886653
No 76
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.80 E-value=0.00013 Score=48.24 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=49.8
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 91 ALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 91 ~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
.+...|.-|-. ++|.++..||+.++++....+-.. ......++++++.+|.++||+|+|+||..
T Consensus 9 ~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~----~~d~~~vd~im~~LD~n~Dg~vdF~EF~~ 72 (91)
T cd05024 9 KMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKN----QNDPMAVDKIMKDLDDCRDGKVGFQSFFS 72 (91)
T ss_pred HHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcC----CCCHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 46777888874 457999999999997765543221 22456789999999999999999999975
No 77
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.80 E-value=7.8e-06 Score=56.33 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhcC
Q psy11348 89 PQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLIDW 160 (160)
Q Consensus 89 ~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~~ 160 (160)
...+.+.|..+|.|+||+|+..|++.+..-+ .+.+.-+..+++.-|.++||+||+.|+..|
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l-----------~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL-----------MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT-----------STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH-----------hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 4578899999999999999999999774321 234556678999999999999999999876
No 78
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.79 E-value=1.2e-05 Score=42.37 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.0
Q ss_pred HHHHHHhhhcCCCCCCcCHHHHhccc
Q psy11348 23 RVYGQYLHLDKNHNGVLSKEELAAYG 48 (160)
Q Consensus 23 ~l~~~F~~lD~d~~G~I~~~el~~~~ 48 (160)
+|+.+|+.+|+|++|+|+.+||+.++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l 26 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAIL 26 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHH
Confidence 47889999999999999999998764
No 79
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.74 E-value=0.00026 Score=46.82 Aligned_cols=62 Identities=6% Similarity=0.300 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhhcCCCCCCcCHHHHhccc--------CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHh
Q psy11348 20 SALRVYGQYLHLDKNHNGVLSKEELAAYG--------TGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLS 82 (160)
Q Consensus 20 ~~~~l~~~F~~lD~d~~G~I~~~el~~~~--------~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~ 82 (160)
.+..|-..|+.+- -+.|.++..||+..+ .....+..+.++++.+|. ++|.|+|.||+.++..
T Consensus 6 ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 6 SMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3556667777775 334578888877653 222346677777777774 6777888887776543
No 80
>KOG0377|consensus
Probab=97.72 E-value=8.8e-05 Score=61.56 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=42.9
Q ss_pred HHHHHHhhhcCCCCCCcCHHHHhcc-------cCCCCCHHHHHHHHHhhc-CCCCccchHHHHHHHHh
Q psy11348 23 RVYGQYLHLDKNHNGVLSKEELAAY-------GTGTLTPVFIERVFQECL-TFETQMDYKTYLDFVLS 82 (160)
Q Consensus 23 ~l~~~F~~lD~d~~G~I~~~el~~~-------~~~~~~~~~v~~i~~~~d-~~~g~I~f~eF~~~~~~ 82 (160)
.|..+|+.+|+|++|.|+.+||... ....++..++.++-..+| +++|.|+++||+.+...
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 3446788888888888888888764 234567777777777777 47788888888775543
No 81
>KOG0751|consensus
Probab=97.68 E-value=0.00033 Score=58.94 Aligned_cols=133 Identities=15% Similarity=0.231 Sum_probs=89.8
Q ss_pred hccCCCCHHHHHHH-----------HHHHhhhcCCCCCCcCHHHHhcccCC---------CCCHHHHHHHHHhhcCCCCc
Q psy11348 11 LEKNWFSATSALRV-----------YGQYLHLDKNHNGVLSKEELAAYGTG---------TLTPVFIERVFQECLTFETQ 70 (160)
Q Consensus 11 ~~~~~f~~~~~~~l-----------~~~F~~lD~d~~G~I~~~el~~~~~~---------~~~~~~v~~i~~~~d~~~g~ 70 (160)
...+..|.+|+..+ ..+|..+|+.++|.+|.+++..+.+. ....++|.+.|.. ...-.
T Consensus 86 tKDglisf~eF~afe~~lC~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~--~~~r~ 163 (694)
T KOG0751|consen 86 TKDGLISFQEFRAFESVLCAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGD--IRKRH 163 (694)
T ss_pred cccccccHHHHHHHHhhccCchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhh--HHHHh
Confidence 33445566665443 37899999999999999999986421 2356788887753 23456
Q ss_pred cchHHHHHHHHhhhcCCcHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCC
Q psy11348 71 MDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPS 150 (160)
Q Consensus 71 I~f~eF~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g 150 (160)
++|.+|..++..+. .+..+.+|+..|+.++|+||.-+++.++......+ ....+-.-++.-.+.+...
T Consensus 164 ~ny~~f~Q~lh~~~----~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~--------lt~~v~~nlv~vagg~~~H 231 (694)
T KOG0751|consen 164 LNYAEFTQFLHEFQ----LEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHL--------LTPFVEENLVSVAGGNDSH 231 (694)
T ss_pred ccHHHHHHHHHHHH----HHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhc--------CCHHHhhhhhhhcCCCCcc
Confidence 89999999887653 24688999999999999999999998875543222 1122223334444445556
Q ss_pred Ceehhhh
Q psy11348 151 RITLQDL 157 (160)
Q Consensus 151 ~it~~eF 157 (160)
++||..|
T Consensus 232 ~vSf~yf 238 (694)
T KOG0751|consen 232 QVSFSYF 238 (694)
T ss_pred ccchHHH
Confidence 6666555
No 82
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.58 E-value=0.00033 Score=57.99 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=49.4
Q ss_pred CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhcCCcHHHHHHHHHHhccCCCCccCHHHHHHHHHHHH
Q psy11348 49 TGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAIS 120 (160)
Q Consensus 49 ~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~ 120 (160)
++......+..+|..+|. ++|.|+.+||+. ...+|+.+|.|+||.|+.+|+..+++...
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 344456788999999985 899999999952 46789999999999999999999887654
No 83
>KOG0751|consensus
Probab=97.58 E-value=0.00048 Score=57.98 Aligned_cols=102 Identities=12% Similarity=0.147 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCcCHHHHhcc-cC---CCCCHHHHHHHHHhhc-C-CCCccchHHHHHHHHhhhcCCcH
Q psy11348 16 FSATSALRVYGQYLHLDKNHNGVLSKEELAAY-GT---GTLTPVFIERVFQECL-T-FETQMDYKTYLDFVLSLENKHEP 89 (160)
Q Consensus 16 f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~-~~---~~~~~~~v~~i~~~~d-~-~~g~I~f~eF~~~~~~~~~~~~~ 89 (160)
-.++++..+.-.|...++++.-..+.+++... ++ .+-....+-++.+.+. . ++|-|+|+||+.+=...+. +.
T Consensus 30 a~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~--pD 107 (694)
T KOG0751|consen 30 ADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCA--PD 107 (694)
T ss_pred CChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccC--ch
Confidence 34566677777777789999999999998864 22 2223446677777664 3 8999999999886554432 24
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHH
Q psy11348 90 QALQYLFRFLDIKHQGYLDTFTLFYFFKAI 119 (160)
Q Consensus 90 ~~l~~~F~~~D~d~dG~I~~~el~~~~~~~ 119 (160)
.....+|..||+.++|-+|.+++..++...
T Consensus 108 al~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 108 ALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred HHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 568889999999999999999999988543
No 84
>KOG0046|consensus
Probab=97.45 E-value=0.00036 Score=59.02 Aligned_cols=76 Identities=14% Similarity=0.252 Sum_probs=61.6
Q ss_pred hhhhccCCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhccc------CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHH
Q psy11348 8 VDRLEKNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAYG------TGTLTPVFIERVFQECLT-FETQMDYKTYLDFV 80 (160)
Q Consensus 8 ~~~~~~~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~------~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~ 80 (160)
++..-.+-||.+|+..+.+.|..+| |++|+|+..++...+ .......++..++...+. .+|.++|++|+..+
T Consensus 5 ~~~~~~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~ 83 (627)
T KOG0046|consen 5 SDPWLQSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIF 83 (627)
T ss_pred cchhhcccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHH
Confidence 4556678899999999999999999 999999999998753 112346788888887764 78999999999976
Q ss_pred Hhhh
Q psy11348 81 LSLE 84 (160)
Q Consensus 81 ~~~~ 84 (160)
..+.
T Consensus 84 ~~l~ 87 (627)
T KOG0046|consen 84 LNLK 87 (627)
T ss_pred Hhhh
Confidence 6543
No 85
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.37 E-value=0.0001 Score=50.80 Aligned_cols=56 Identities=20% Similarity=0.323 Sum_probs=29.1
Q ss_pred HHHHHHHhhhcCCCCCCcCHHHHhcccCC-CCCHHHHHHHHHhhcC-CCCccchHHHH
Q psy11348 22 LRVYGQYLHLDKNHNGVLSKEELAAYGTG-TLTPVFIERVFQECLT-FETQMDYKTYL 77 (160)
Q Consensus 22 ~~l~~~F~~lD~d~~G~I~~~el~~~~~~-~~~~~~v~~i~~~~d~-~~g~I~f~eF~ 77 (160)
..+.=.|..+|.|+||.|+..|+..+... ..++.-+..++..+|. +++.|++.||.
T Consensus 54 ~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 54 RVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp HHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 44445567777777777777777665431 2334445666666663 56666666664
No 86
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.35 E-value=0.00097 Score=39.19 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=34.1
Q ss_pred cchHHHHHHHHhhhcCCcHHHHHHHHHHhccCCCCccCHHHHHHHHHHH
Q psy11348 71 MDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAI 119 (160)
Q Consensus 71 I~f~eF~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~ 119 (160)
++|.|--.++..+.-.....-+..+|+.+|+.++|.+..+||..+++.+
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 6777777776655433344557778999999999999999999888753
No 87
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.19 E-value=0.00045 Score=34.09 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.8
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHH
Q psy11348 92 LQYLFRFLDIKHQGYLDTFTLFYFFKA 118 (160)
Q Consensus 92 l~~~F~~~D~d~dG~I~~~el~~~~~~ 118 (160)
++.+|+.+|.+++|.|+..++..++++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 577899999999999999999988764
No 88
>KOG4251|consensus
Probab=97.12 E-value=0.0011 Score=51.43 Aligned_cols=62 Identities=10% Similarity=0.232 Sum_probs=46.7
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHHHH-HHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhh
Q psy11348 90 QALQYLFRFLDIKHQGYLDTFTLFYFFKAISK-QITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLI 158 (160)
Q Consensus 90 ~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~-~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~ 158 (160)
.++..+|...|.|.||+||..|+++.+++-.+ .+... .+...-.|+.+++++||-|+|+||+
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqea-------meeSkthFraVDpdgDGhvsWdEyk 163 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEA-------MEESKTHFRAVDPDGDGHVSWDEYK 163 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHH-------HhhhhhheeeeCCCCCCceehhhhh
Confidence 47999999999999999999999988764322 22111 1112346888999999999999986
No 89
>KOG4065|consensus
Probab=97.11 E-value=0.0013 Score=45.18 Aligned_cols=71 Identities=21% Similarity=0.413 Sum_probs=50.0
Q ss_pred cHHHHHH-HHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCC--CCCh----HhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 88 EPQALQY-LFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQE--PINF----EDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 88 ~~~~l~~-~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~--~~~~----~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
+++.+++ .|++.|.|++|+|+--||-..+.-..+.- ..|-+ +++. +.+++.+++.-+.++||.|.|-||.+
T Consensus 64 tpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h-~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 64 TPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAH-DSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred CHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhh-hcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 3455555 49999999999999999888777666532 23433 3333 33455556666788899999999976
No 90
>KOG1707|consensus
Probab=96.92 E-value=0.0092 Score=51.42 Aligned_cols=109 Identities=18% Similarity=0.205 Sum_probs=78.6
Q ss_pred hccCCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhcc----cCCCCCHHHHHHHHHhhcC------CCCccchHHHHHHH
Q psy11348 11 LEKNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAY----GTGTLTPVFIERVFQECLT------FETQMDYKTYLDFV 80 (160)
Q Consensus 11 ~~~~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~----~~~~~~~~~v~~i~~~~d~------~~g~I~f~eF~~~~ 80 (160)
.+.+.+.+.-+..|..+|..-|.|.||.++-.|+..+ ++.++.+.++..+-..++. .+..++..-|+.+.
T Consensus 184 a~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~ 263 (625)
T KOG1707|consen 184 AEEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLN 263 (625)
T ss_pred cccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHH
Confidence 3456677788899999999999999999999998864 4666666666555544431 45667777776543
Q ss_pred HhhhcCC---------------------------------------c---HHHHHHHHHHhccCCCCccCHHHHHHHHHH
Q psy11348 81 LSLENKH---------------------------------------E---PQALQYLFRFLDIKHQGYLDTFTLFYFFKA 118 (160)
Q Consensus 81 ~~~~~~~---------------------------------------~---~~~l~~~F~~~D~d~dG~I~~~el~~~~~~ 118 (160)
..+.... + .+.+...|..||.|+||-+++.|+..+++.
T Consensus 264 ~lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~ 343 (625)
T KOG1707|consen 264 TLFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFST 343 (625)
T ss_pred HHHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhh
Confidence 3211100 0 234777899999999999999999999875
Q ss_pred H
Q psy11348 119 I 119 (160)
Q Consensus 119 ~ 119 (160)
.
T Consensus 344 ~ 344 (625)
T KOG1707|consen 344 A 344 (625)
T ss_pred C
Confidence 3
No 91
>KOG0169|consensus
Probab=96.84 E-value=0.0078 Score=53.06 Aligned_cols=132 Identities=19% Similarity=0.336 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHhhhcCCCCCCcCHHHHhccc---CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhcCCcHHHH
Q psy11348 17 SATSALRVYGQYLHLDKNHNGVLSKEELAAYG---TGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLENKHEPQAL 92 (160)
Q Consensus 17 ~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~---~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~~~~~~~l 92 (160)
..+....|...|...|++++|.++..+...++ ...+....+.++|...+. .++.+...+|+.+....... + .+
T Consensus 131 ~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r--p-ev 207 (746)
T KOG0169|consen 131 RSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR--P-EV 207 (746)
T ss_pred cchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC--c-hH
Confidence 34556888999999999999999999988763 445677788899988864 78999999998876543322 2 67
Q ss_pred HHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCC----CCCCeehhhhhc
Q psy11348 93 QYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPK----DPSRITLQDLID 159 (160)
Q Consensus 93 ~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~----~~g~it~~eF~~ 159 (160)
...|.-+= ++.++++.++|..++.+.. |.+..+.+. +.++++...+. ..+.++++.|.+
T Consensus 208 ~~~f~~~s-~~~~~ls~~~L~~Fl~~~q------~e~~~~~~~-ae~ii~~~e~~k~~~~~~~l~ldgF~~ 270 (746)
T KOG0169|consen 208 YFLFVQYS-HGKEYLSTDDLLRFLEEEQ------GEDGATLDE-AEEIIERYEPSKEFRRHGLLSLDGFTR 270 (746)
T ss_pred HHHHHHHh-CCCCccCHHHHHHHHHHhc------ccccccHHH-HHHHHHHhhhhhhccccceecHHHHHH
Confidence 88887764 4499999999999998752 222233333 45676665443 245577777753
No 92
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.82 E-value=0.018 Score=39.05 Aligned_cols=68 Identities=15% Similarity=0.247 Sum_probs=51.2
Q ss_pred HHHHHHHHhhcCCCCccchHHHHHHHHhhhcCCcHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHh
Q psy11348 55 VFIERVFQECLTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQIT 124 (160)
Q Consensus 55 ~~v~~i~~~~d~~~g~I~f~eF~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~ 124 (160)
....++|..++.++|.|+-.+-..++.. ..-+.+.+..+|.+.|.|++|+++.+|+.-.++=+..++.
T Consensus 10 ~~y~~~F~~l~~~~g~isg~~a~~~f~~--S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~ 77 (104)
T PF12763_consen 10 QKYDQIFQSLDPQDGKISGDQAREFFMK--SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLN 77 (104)
T ss_dssp HHHHHHHHCTSSSTTEEEHHHHHHHHHH--TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEeHHHHHHHHHH--cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhc
Confidence 4566788877777899999998886653 3344578999999999999999999999877654434343
No 93
>KOG2562|consensus
Probab=96.81 E-value=0.0075 Score=50.50 Aligned_cols=121 Identities=20% Similarity=0.260 Sum_probs=70.8
Q ss_pred HHHhhhcCCCCCCcCHHHHhccc-----CCCC-----C--------HHHHHHHHHhhcC-CCCccchHHHHH-----HHH
Q psy11348 26 GQYLHLDKNHNGVLSKEELAAYG-----TGTL-----T--------PVFIERVFQECLT-FETQMDYKTYLD-----FVL 81 (160)
Q Consensus 26 ~~F~~lD~d~~G~I~~~el~~~~-----~~~~-----~--------~~~v~~i~~~~d~-~~g~I~f~eF~~-----~~~ 81 (160)
+.++.++..+.|+|...++...+ .+++ + .-.+++||=-++. +.|.|+..+-++ .|.
T Consensus 178 ~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~ 257 (493)
T KOG2562|consen 178 QFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQERYAETVIQRIFYYLNRSRTGRITIQELLRSNLLDALL 257 (493)
T ss_pred HHHHHHhccCccceeccccHHHHHHHHhcCCchhhccChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHHhHHHHHHH
Confidence 44555666666666666655432 1111 1 2234556655553 789888888765 222
Q ss_pred hhhcC-Cc--------HHHHHHH---HHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCC--
Q psy11348 82 SLENK-HE--------PQALQYL---FRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPK-- 147 (160)
Q Consensus 82 ~~~~~-~~--------~~~l~~~---F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~-- 147 (160)
.+... .. .+....+ |--+|+|+||.|++++|..+-.. +. ..-+++.||..+.+.
T Consensus 258 ~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~-----------tl-t~~ivdRIFs~v~r~~~ 325 (493)
T KOG2562|consen 258 ELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH-----------TL-TERIVDRIFSQVPRGFT 325 (493)
T ss_pred HHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhcc-----------ch-hhHHHHHHHhhccccce
Confidence 22111 11 1223333 77889999999999999976422 11 244667788744333
Q ss_pred --CCCCeehhhhh
Q psy11348 148 --DPSRITLQDLI 158 (160)
Q Consensus 148 --~~g~it~~eF~ 158 (160)
.+|+++|++|+
T Consensus 326 ~~~eGrmdykdFv 338 (493)
T KOG2562|consen 326 VKVEGRMDYKDFV 338 (493)
T ss_pred eeecCcccHHHHH
Confidence 47888888886
No 94
>KOG0046|consensus
Probab=96.70 E-value=0.0027 Score=53.88 Aligned_cols=63 Identities=19% Similarity=0.331 Sum_probs=52.4
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 90 QALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 90 ~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
..++..|...| |++|+|+..++..++....... |+ ...+.+.+++...+++.+|+|+|++|++
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~---g~---~~~eei~~~l~~~~~~~~g~v~fe~f~~ 81 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPL---GY---FVREEIKEILGEVGVDADGRVEFEEFVG 81 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccc---cc---hhHHHHHHHHhccCCCcCCccCHHHHHH
Confidence 36888999999 9999999999999987654322 22 2467789999999999999999999986
No 95
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.18 E-value=0.011 Score=34.82 Aligned_cols=44 Identities=16% Similarity=0.291 Sum_probs=32.7
Q ss_pred cCHHHHhcc---cCCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHh
Q psy11348 39 LSKEELAAY---GTGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLS 82 (160)
Q Consensus 39 I~~~el~~~---~~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~ 82 (160)
++..|++.+ ++..+++..+..+|+.+|. ++|.++.+||+.|+..
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 567787776 4667789999999999996 8899999999998754
No 96
>KOG0040|consensus
Probab=96.02 E-value=0.013 Score=55.29 Aligned_cols=65 Identities=22% Similarity=0.420 Sum_probs=51.9
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHh--hcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 91 ALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQIT--ESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 91 ~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~--~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
....+|+.||.+.+|.++..+++..++++|-.+. ..|. ++.-..++++.++|+.+|.|+.++|++
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~----~~p~fe~~ld~vDP~r~G~Vsl~dY~a 2320 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGE----PEPEFEEILDLVDPNRDGYVSLQDYMA 2320 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCC----CChhHHHHHHhcCCCCcCcccHHHHHH
Confidence 3667799999999999999999999998765442 2222 233457899999999999999999875
No 97
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.80 E-value=0.0066 Score=29.61 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=17.9
Q ss_pred HHHHHhhhcCCCCCCcCHHHHhcc
Q psy11348 24 VYGQYLHLDKNHNGVLSKEELAAY 47 (160)
Q Consensus 24 l~~~F~~lD~d~~G~I~~~el~~~ 47 (160)
+..+|..+|.+++|.|+..++..+
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~ 25 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDL 25 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHH
Confidence 456777788888888888887654
No 98
>KOG3555|consensus
Probab=95.78 E-value=0.0097 Score=48.20 Aligned_cols=58 Identities=17% Similarity=0.140 Sum_probs=45.8
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhcC
Q psy11348 90 QALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLIDW 160 (160)
Q Consensus 90 ~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~~ 160 (160)
.++.|+|..+|.|.||.++..||+.+.... .+.-+..+|+.-+...||.||-.|+..|
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk-------------nE~CikpFfnsCD~~kDg~iS~~EWC~C 307 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIELDK-------------NEACIKPFFNSCDTYKDGSISTNEWCYC 307 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhhccC-------------chhHHHHHHhhhcccccCccccchhhhh
Confidence 578899999999999999999998775432 2334567888888888999998888765
No 99
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.77 E-value=0.025 Score=36.30 Aligned_cols=60 Identities=15% Similarity=0.244 Sum_probs=45.1
Q ss_pred HHHHHhhhcCCCCCCcCHHHHhccc---CC--CCCHHHHHHHHHhhcC-----CCCccchHHHHHHHHhhh
Q psy11348 24 VYGQYLHLDKNHNGVLSKEELAAYG---TG--TLTPVFIERVFQECLT-----FETQMDYKTYLDFVLSLE 84 (160)
Q Consensus 24 l~~~F~~lD~d~~G~I~~~el~~~~---~~--~~~~~~v~~i~~~~d~-----~~g~I~f~eF~~~~~~~~ 84 (160)
|..+|..+-. +.+.||.++|..++ +. ..+...+.+++..+.. ..+.|+++.|..||.+-.
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 5667777744 78899999999875 22 3478888888888742 568899999999887643
No 100
>KOG0038|consensus
Probab=95.77 E-value=0.015 Score=41.84 Aligned_cols=93 Identities=11% Similarity=0.068 Sum_probs=58.3
Q ss_pred HHHHHHHhhhcCCCCCCcCHHHHhcc----cCCCCCHHHHHHHHHhhc-CCCCccchHHHHHHHHhhhc--CCcHH---H
Q psy11348 22 LRVYGQYLHLDKNHNGVLSKEELAAY----GTGTLTPVFIERVFQECL-TFETQMDYKTYLDFVLSLEN--KHEPQ---A 91 (160)
Q Consensus 22 ~~l~~~F~~lD~d~~G~I~~~el~~~----~~~~~~~~~v~~i~~~~d-~~~g~I~f~eF~~~~~~~~~--~~~~~---~ 91 (160)
++|.++| -.||.|-+|.+++... ....+-..-+...|..+| .+++.|.-.+....+..+.+ .+.++ -
T Consensus 74 ~ri~e~F---SeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i 150 (189)
T KOG0038|consen 74 RRICEVF---SEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELI 150 (189)
T ss_pred HHHHHHh---ccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHH
Confidence 3455554 4688888888888754 122223345566677777 36777777776665554332 22221 2
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHH
Q psy11348 92 LQYLFRFLDIKHQGYLDTFTLFYFFK 117 (160)
Q Consensus 92 l~~~F~~~D~d~dG~I~~~el~~~~~ 117 (160)
+..+...-|.||||.|+..|+..++.
T Consensus 151 ~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 151 CEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred HHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 45556777888888888888887764
No 101
>KOG4666|consensus
Probab=95.74 E-value=0.047 Score=44.11 Aligned_cols=95 Identities=14% Similarity=0.094 Sum_probs=75.3
Q ss_pred HHHHHHHhhhcCCCCCCcCHHHHhcc----cCCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhcCCcHHHHHHHH
Q psy11348 22 LRVYGQYLHLDKNHNGVLSKEELAAY----GTGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLENKHEPQALQYLF 96 (160)
Q Consensus 22 ~~l~~~F~~lD~d~~G~I~~~el~~~----~~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~~~~~~~l~~~F 96 (160)
..+...|.+||.+++|.++..|-... .+...++..++.-|+.++. .+|.+.=.+|...+..... ...-.+-..|
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg-v~~l~v~~lf 337 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG-VEVLRVPVLF 337 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC-cceeeccccc
Confidence 56778999999999999999986653 3445578889999999885 7788888888776665332 2234677889
Q ss_pred HHhccCCCCccCHHHHHHHHH
Q psy11348 97 RFLDIKHQGYLDTFTLFYFFK 117 (160)
Q Consensus 97 ~~~D~d~dG~I~~~el~~~~~ 117 (160)
...+...+|+|+.++++.+..
T Consensus 338 ~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 338 PSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred hhhhcccCcceeHHHHHHHHH
Confidence 999999999999999999864
No 102
>KOG4065|consensus
Probab=95.63 E-value=0.041 Score=37.95 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=48.1
Q ss_pred cCCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhccc---------CC----CCCHHHHHHHHHhhc-----CCCCccchH
Q psy11348 13 KNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAYG---------TG----TLTPVFIERVFQECL-----TFETQMDYK 74 (160)
Q Consensus 13 ~~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~---------~~----~~~~~~v~~i~~~~d-----~~~g~I~f~ 74 (160)
...+|+++++-- -|+..|-|++|.|+--|+..++ ++ ..++.++.+|+..+. +++|.|+|.
T Consensus 60 ~a~mtpeqlqfH--YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYg 137 (144)
T KOG4065|consen 60 VAKMTPEQLQFH--YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYG 137 (144)
T ss_pred hhhCCHHHHhhh--hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHH
Confidence 456788886643 4778899999999998887642 22 225788899987763 178999999
Q ss_pred HHHH
Q psy11348 75 TYLD 78 (160)
Q Consensus 75 eF~~ 78 (160)
||+.
T Consensus 138 EflK 141 (144)
T KOG4065|consen 138 EFLK 141 (144)
T ss_pred HHHh
Confidence 9976
No 103
>KOG3866|consensus
Probab=95.59 E-value=0.016 Score=46.40 Aligned_cols=68 Identities=15% Similarity=0.396 Sum_probs=49.2
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHH-------HHHHHhcCCCCCCCeehhhhhc
Q psy11348 92 LQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVK-------DEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 92 l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~-------~~i~~~~~~~~~g~it~~eF~~ 159 (160)
-+-+|.+.|.|+||+++..||..+|..-.++|-.-..++..-.+.. ..+++.++.+.|--||+++|.+
T Consensus 246 PKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~ 320 (442)
T KOG3866|consen 246 PKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLN 320 (442)
T ss_pred cchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHh
Confidence 3556889999999999999999999888777743222211111211 2346678999999999999975
No 104
>KOG0035|consensus
Probab=95.52 E-value=0.055 Score=48.92 Aligned_cols=107 Identities=16% Similarity=-0.003 Sum_probs=80.0
Q ss_pred hhhhhccCCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhccc---CCCCC--HHHHHHHHHhhcC----CCCccchHHHH
Q psy11348 7 SVDRLEKNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAYG---TGTLT--PVFIERVFQECLT----FETQMDYKTYL 77 (160)
Q Consensus 7 ~~~~~~~~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~---~~~~~--~~~v~~i~~~~d~----~~g~I~f~eF~ 77 (160)
+.+.....--+......+++.|+.+|+...|.++++++..++ |.... +.-++.+|..+.. ..|.++|.+|.
T Consensus 732 ~il~R~sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ 811 (890)
T KOG0035|consen 732 EILERDSKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFE 811 (890)
T ss_pred HHHHhcccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHH
Confidence 344455566677889999999999999999999999999874 32222 2234455544432 34889999999
Q ss_pred HHHHh-hhcCCcHHHHHHHHHHhccCCCCccCHHHHHH
Q psy11348 78 DFVLS-LENKHEPQALQYLFRFLDIKHQGYLDTFTLFY 114 (160)
Q Consensus 78 ~~~~~-~~~~~~~~~l~~~F~~~D~d~dG~I~~~el~~ 114 (160)
.+|.. ++...+..++..+|+.+=++.. +|..+||..
T Consensus 812 ddl~R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 812 DDLEREYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hHhhhhhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 98876 5566777889999999966666 898888876
No 105
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.22 E-value=0.072 Score=34.10 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=49.7
Q ss_pred HHHHHHHhhcCCCCccchHHHHHHHHhhhc--CCcHHHHHHHHHHhccC----CCCccCHHHHHHHHH
Q psy11348 56 FIERVFQECLTFETQMDYKTYLDFVLSLEN--KHEPQALQYLFRFLDIK----HQGYLDTFTLFYFFK 117 (160)
Q Consensus 56 ~v~~i~~~~d~~~g~I~f~eF~~~~~~~~~--~~~~~~l~~~F~~~D~d----~dG~I~~~el~~~~~ 117 (160)
+|..||..+..+.+.|+.++|..|+....+ ..+...++.+++.|..+ ..+.+|.+.+..++.
T Consensus 1 ei~~if~~ys~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 1 EIEEIFRKYSSDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHHCTTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 478899988667889999999999986543 23567788888888655 489999999999874
No 106
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.83 E-value=0.31 Score=35.96 Aligned_cols=63 Identities=13% Similarity=0.251 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhcC-CCCccchHHHHHHHHhhhcCCcH----H---HHHHHHHHhccCCCCccCHHHHHHHHH
Q psy11348 54 PVFIERVFQECLT-FETQMDYKTYLDFVLSLENKHEP----Q---ALQYLFRFLDIKHQGYLDTFTLFYFFK 117 (160)
Q Consensus 54 ~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~~~~~----~---~l~~~F~~~D~d~dG~I~~~el~~~~~ 117 (160)
+.-.+.||+.+.. +.+.+++.|...++..-....++ . ....++.+. .|.+|++++++++.++.
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVYD 165 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhcc
Confidence 5667788888764 56789999988877652222221 1 122224443 57788999998888763
No 107
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.65 E-value=0.04 Score=34.51 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCC-------CCCeehhhhhc
Q psy11348 88 EPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKD-------PSRITLQDLID 159 (160)
Q Consensus 88 ~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~-------~g~it~~eF~~ 159 (160)
+.+.+..+|+.+ .+++++||..+|++.+. .+++ +-.+..|.+.. .|.+.|..|.+
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~---------------pe~a-ey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT---------------PEQA-EYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS----------------CCCH-HHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC---------------cHHH-HHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 456899999999 89999999999998642 2222 34444443322 47788988875
No 108
>KOG0039|consensus
Probab=94.47 E-value=0.11 Score=46.04 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=62.6
Q ss_pred CCccchHHHHHHHHhhhcCCcHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCC
Q psy11348 68 ETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPK 147 (160)
Q Consensus 68 ~g~I~f~eF~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~ 147 (160)
++ |+++||. ....+.+++++-+|.++|. ++|.++.+++..+.+....... ...-..+..+....++.+.+++
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANW-LSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhh-hhhhhhhhhHHHHHhhhhcccc
Confidence 45 8999997 3344556799999999998 9999999999999876643322 2222345677788899999999
Q ss_pred CCCCeehhhhh
Q psy11348 148 DPSRITLQDLI 158 (160)
Q Consensus 148 ~~g~it~~eF~ 158 (160)
+.|.++++++.
T Consensus 74 ~~~y~~~~~~~ 84 (646)
T KOG0039|consen 74 HKGYITNEDLE 84 (646)
T ss_pred ccceeeecchh
Confidence 98888776653
No 109
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=92.61 E-value=0.14 Score=34.22 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=38.3
Q ss_pred HHHHHHHHhhhcCCCCCCcCHHHHhcccCCCCCHHHHHHHHHhhcC----CCCccchHHHHH
Q psy11348 21 ALRVYGQYLHLDKNHNGVLSKEELAAYGTGTLTPVFIERVFQECLT----FETQMDYKTYLD 78 (160)
Q Consensus 21 ~~~l~~~F~~lD~d~~G~I~~~el~~~~~~~~~~~~v~~i~~~~d~----~~g~I~f~eF~~ 78 (160)
-..+...|+.+-+ +|.|+.++|..++|..-+.+++..||..+-. ..+.|+-+|...
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~e 88 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECIGMKDSKEFAGELFDALARRRGIKGDSITKDELKE 88 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHHT--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhcCCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHH
Confidence 4567788999877 8899999999999887788999999987642 234455555444
No 110
>KOG3555|consensus
Probab=92.57 E-value=0.14 Score=41.62 Aligned_cols=90 Identities=14% Similarity=0.176 Sum_probs=52.0
Q ss_pred HHHHHHhhhcCCCCCCcCHHHHhcc---cCC---CCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhcCCcHHHHHHH
Q psy11348 23 RVYGQYLHLDKNHNGVLSKEELAAY---GTG---TLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLENKHEPQALQYL 95 (160)
Q Consensus 23 ~l~~~F~~lD~d~~G~I~~~el~~~---~~~---~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~~~~~~~l~~~ 95 (160)
+|+.=|..+=.+.++......+... +.. ++....+-=||..+|. .++.++..|.... +....+.=++-+
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I----~ldknE~CikpF 287 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAI----ELDKNEACIKPF 287 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhh----hccCchhHHHHH
Confidence 4556666665666666655555544 111 2234556667776664 5667777666432 222333446667
Q ss_pred HHHhccCCCCccCHHHHHHHH
Q psy11348 96 FRFLDIKHQGYLDTFTLFYFF 116 (160)
Q Consensus 96 F~~~D~d~dG~I~~~el~~~~ 116 (160)
|+.+|...||.|+..|-..-|
T Consensus 288 fnsCD~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 288 FNSCDTYKDGSISTNEWCYCF 308 (434)
T ss_pred HhhhcccccCccccchhhhhh
Confidence 777777777777777766655
No 111
>KOG0042|consensus
Probab=92.49 E-value=0.28 Score=42.49 Aligned_cols=79 Identities=10% Similarity=0.098 Sum_probs=64.5
Q ss_pred hhccCCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhccc---CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhc
Q psy11348 10 RLEKNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAYG---TGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLEN 85 (160)
Q Consensus 10 ~~~~~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~---~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~ 85 (160)
.++.=.+++++++..+..|..+|.|+.|.++.+++.+.+ +...+..-..++.+..+. -+|.+...||..+++....
T Consensus 581 ~~~~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 581 MSIPIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred cccccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 344556899999999999999999999999999998864 336677788888888775 4899999999998887654
Q ss_pred CCc
Q psy11348 86 KHE 88 (160)
Q Consensus 86 ~~~ 88 (160)
..+
T Consensus 661 g~~ 663 (680)
T KOG0042|consen 661 GCT 663 (680)
T ss_pred CCh
Confidence 443
No 112
>KOG4578|consensus
Probab=92.41 E-value=0.05 Score=43.94 Aligned_cols=62 Identities=13% Similarity=0.221 Sum_probs=46.0
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhcC
Q psy11348 91 ALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLIDW 160 (160)
Q Consensus 91 ~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~~ 160 (160)
-+.+-|..+|+|+++.|...|++-|=+=+.+. -....-...+++.-|.++|-+||++|++.|
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~--------s~~rkC~rk~~~yCDlNkDKkISl~Ew~~C 395 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKK--------SKPRKCSRKFFKYCDLNKDKKISLDEWRGC 395 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhh--------ccHHHHhhhcchhcccCCCceecHHHHhhh
Confidence 46777999999999999999987653322211 124455577888889999999999999876
No 113
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=91.76 E-value=1.3 Score=29.24 Aligned_cols=67 Identities=18% Similarity=0.346 Sum_probs=41.9
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCC---hHhHHHHHHHhcCCCCCCCeehhhhhcC
Q psy11348 90 QALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPIN---FEDVKDEIFDMAKPKDPSRITLQDLIDW 160 (160)
Q Consensus 90 ~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~---~~~~~~~i~~~~~~~~~g~it~~eF~~~ 160 (160)
++++++|+.+ .|++|.++..-|..++++..+--...|.. .+ .+.-+...|.... ..-+|+-..|..|
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~-~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~w 72 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEG-PAFGYIEPSVRSCFQQVQ--LSPKITENQFLDW 72 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-G-GGGT--HHHHHHHHHHTT--T-S-B-HHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCcc-ccccCcHHHHHHHhcccC--CCCccCHHHHHHH
Confidence 5899999999 79999999999999998886654433321 11 3444556666653 3456888888764
No 114
>KOG4347|consensus
Probab=90.97 E-value=0.28 Score=42.90 Aligned_cols=102 Identities=15% Similarity=0.201 Sum_probs=71.2
Q ss_pred hhccCCCCHHHHHHHHHHHhh-hcCCCCCCc-------------CHHHHhcccCC----CCCHHHHHHHHHhhcC-CCCc
Q psy11348 10 RLEKNWFSATSALRVYGQYLH-LDKNHNGVL-------------SKEELAAYGTG----TLTPVFIERVFQECLT-FETQ 70 (160)
Q Consensus 10 ~~~~~~f~~~~~~~l~~~F~~-lD~d~~G~I-------------~~~el~~~~~~----~~~~~~v~~i~~~~d~-~~g~ 70 (160)
...+..|+.+++..||.+|.. +=.+.-|.. +.+.+...... .-+..++.++|...|. .+|.
T Consensus 492 ~~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~ 571 (671)
T KOG4347|consen 492 VVQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGL 571 (671)
T ss_pred hcccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcce
Confidence 445778999999999999974 111221111 11111111111 1245688999999885 7899
Q ss_pred cchHHHHHHHHhhhcCCcHHHHHHHHHHhccCCCCccCHHHH
Q psy11348 71 MDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTL 112 (160)
Q Consensus 71 I~f~eF~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~el 112 (160)
|+|.+++..+..+....--++++.+|+++|.+++ ....++.
T Consensus 572 Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 572 LTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred eEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 9999999988876665556799999999999999 8888776
No 115
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=90.06 E-value=0.33 Score=30.38 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=36.6
Q ss_pred HHHHHHhhhcCCCCCCcCHHHHhcccCCCCCHHHHHHHHHhhcC--------CCCccchHHHHH
Q psy11348 23 RVYGQYLHLDKNHNGVLSKEELAAYGTGTLTPVFIERVFQECLT--------FETQMDYKTYLD 78 (160)
Q Consensus 23 ~l~~~F~~lD~d~~G~I~~~el~~~~~~~~~~~~v~~i~~~~d~--------~~g~I~f~eF~~ 78 (160)
.+.++|+.+ .++.++||..+|++.+... .++.+.+.+.. ..+.++|..|+.
T Consensus 7 qv~~aFr~l-A~~KpyVT~~dLr~~l~pe----~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 7 QVEEAFRAL-AGGKPYVTEEDLRRSLTPE----QAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHH-CTSSSCEEHHHHHHHS-CC----CHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHH-HcCCCcccHHHHHHHcCcH----HHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 467899999 8889999999999875421 23556655542 237899999865
No 116
>KOG1955|consensus
Probab=89.71 E-value=0.93 Score=38.83 Aligned_cols=67 Identities=7% Similarity=0.084 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCcCHHHHhcccC-CCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHh
Q psy11348 16 FSATSALRVYGQYLHLDKNHNGVLSKEELAAYGT-GTLTPVFIERVFQECLT-FETQMDYKTYLDFVLS 82 (160)
Q Consensus 16 f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~~-~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~ 82 (160)
.+.++-..+-..|+-+-.|..|.|+=.--+.++. ..++=.++..|++..|. .+|.+++.||.+++..
T Consensus 225 IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 225 ITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred cCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 4667777777999999999999999876666643 35566789999998884 8999999999886653
No 117
>PLN02952 phosphoinositide phospholipase C
Probab=88.46 E-value=4 Score=35.99 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=31.6
Q ss_pred CCCccchHHHHHHHHhhhc--CCcHHHHHHHHHHhccCCCCccCHHHHHHHHHH
Q psy11348 67 FETQMDYKTYLDFVLSLEN--KHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKA 118 (160)
Q Consensus 67 ~~g~I~f~eF~~~~~~~~~--~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~ 118 (160)
+.|.++|++|..|...+.. ...+..+..+|..+= .+.+.++.++|..+++.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~-~~~~~mt~~~l~~FL~~ 65 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFS-VGGGHMGADQLRRFLVL 65 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHh-CCCCccCHHHHHHHHHH
Confidence 3467777777766655432 224556777777773 33356777777777754
No 118
>KOG4578|consensus
Probab=88.31 E-value=0.3 Score=39.61 Aligned_cols=52 Identities=10% Similarity=0.163 Sum_probs=27.3
Q ss_pred CCCccchHHHHHHHHhhhcCCc-HHHHHHHHHHhccCCCCccCHHHHHHHHHH
Q psy11348 67 FETQMDYKTYLDFVLSLENKHE-PQALQYLFRFLDIKHQGYLDTFTLFYFFKA 118 (160)
Q Consensus 67 ~~g~I~f~eF~~~~~~~~~~~~-~~~l~~~F~~~D~d~dG~I~~~el~~~~~~ 118 (160)
+++.|+-.||--|-..+.+.+. ..=.+.+|+.+|.|+|-.||.+|++.-+..
T Consensus 346 ~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 346 SNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred ccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 3444555444333322222222 223566677777777777777777665543
No 119
>PLN02952 phosphoinositide phospholipase C
Probab=87.73 E-value=3.7 Score=36.17 Aligned_cols=83 Identities=13% Similarity=0.120 Sum_probs=56.6
Q ss_pred CCCCcCHHHHhccc-----CCCCCHHHHHHHHHhhcCCCCccchHHHHHHHHhhhcC--CcHHHHHHHHHHh-------c
Q psy11348 35 HNGVLSKEELAAYG-----TGTLTPVFIERVFQECLTFETQMDYKTYLDFVLSLENK--HEPQALQYLFRFL-------D 100 (160)
Q Consensus 35 ~~G~I~~~el~~~~-----~~~~~~~~v~~i~~~~d~~~g~I~f~eF~~~~~~~~~~--~~~~~l~~~F~~~-------D 100 (160)
+.|.++.+++..+. ....++.+|..||..+-.+.+.|+.++|..|+...... .+...+..+|+.+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 46899999997652 22336789999999986666789999999999875542 3334444444432 1
Q ss_pred cCCCCccCHHHHHHHHH
Q psy11348 101 IKHQGYLDTFTLFYFFK 117 (160)
Q Consensus 101 ~d~dG~I~~~el~~~~~ 117 (160)
..+.+.++.+.+..++.
T Consensus 93 ~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 93 RYTRHGLNLDDFFHFLL 109 (599)
T ss_pred cccccCcCHHHHHHHHc
Confidence 12334588888888774
No 120
>KOG1029|consensus
Probab=86.34 E-value=0.96 Score=40.72 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhhcCCCCCCcCHHHHhccc-CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHH
Q psy11348 20 SALRVYGQYLHLDKNHNGVLSKEELAAYG-TGTLTPVFIERVFQECLT-FETQMDYKTYLDFVL 81 (160)
Q Consensus 20 ~~~~l~~~F~~lD~d~~G~I~~~el~~~~-~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~ 81 (160)
.-..++.+|+.+|+-.+|++|-..-+.++ ..+++...+..|+..-|. ++|.++-+||+-.|.
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 34567899999999999999988777665 346777788889887774 899999999976543
No 121
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=85.31 E-value=3.9 Score=26.94 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=53.6
Q ss_pred CCCCcCHHHHhccc----C-CCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhcCCc-HHHHHHHHHHhccCCCCcc
Q psy11348 35 HNGVLSKEELAAYG----T-GTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLENKHE-PQALQYLFRFLDIKHQGYL 107 (160)
Q Consensus 35 ~~G~I~~~el~~~~----~-~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~~~~-~~~l~~~F~~~D~d~dG~I 107 (160)
-||.++..|...+. . .++++....+++..+.. .....++.+|..-+........ ..-+..+|++- --||.+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA--~ADG~~ 89 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVA--YADGEL 89 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HhcCCC
Confidence 48899999988652 2 35678888888877754 4566888999876554221111 12467778876 567999
Q ss_pred CHHHHHHH
Q psy11348 108 DTFTLFYF 115 (160)
Q Consensus 108 ~~~el~~~ 115 (160)
++.|-.-+
T Consensus 90 ~~~E~~~l 97 (104)
T cd07313 90 DEYEEHLI 97 (104)
T ss_pred CHHHHHHH
Confidence 99887644
No 122
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=83.06 E-value=7.5 Score=28.08 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=49.6
Q ss_pred CHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhcCCcHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCC
Q psy11348 53 TPVFIERVFQECLT-FETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPI 131 (160)
Q Consensus 53 ~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~ 131 (160)
...+++.+...-+. .++.|++..|..+++. ++--|--..=..+....|.+.++.++..+.+.....+.+..
T Consensus 81 ~~s~Lehllg~~~~~~n~~i~~~~ff~~lQ~--------~lGdWIT~~~Lkh~n~MSk~Qik~L~~~Ii~~akae~~dtE 152 (175)
T PF04876_consen 81 CHSFLEHLLGGEDDSTNGLIDIGKFFDILQP--------KLGDWITKNFLKHPNRMSKDQIKTLCEQIIEMAKAESSDTE 152 (175)
T ss_pred HHHHHHHHhcCCcCCcccceeHHHHHHHHHH--------HhhhHHHHHHHhccchhhHHHHHHHHHHHHHHHhccCCchH
Confidence 34556666654332 3567999999998864 33334333334678888999999988887776555454444
Q ss_pred ChHhHHHH
Q psy11348 132 NFEDVKDE 139 (160)
Q Consensus 132 ~~~~~~~~ 139 (160)
..+.+.+.
T Consensus 153 ~Ye~vwkK 160 (175)
T PF04876_consen 153 HYEKVWKK 160 (175)
T ss_pred HHHHHHHH
Confidence 44444443
No 123
>KOG2243|consensus
Probab=82.77 E-value=1.7 Score=41.90 Aligned_cols=53 Identities=17% Similarity=0.301 Sum_probs=42.9
Q ss_pred HHHhhhcCCCCCCcCHHHHhcccC--CCCCHHHHHHHHHhhcC-CCCccchHHHHH
Q psy11348 26 GQYLHLDKNHNGVLSKEELAAYGT--GTLTPVFIERVFQECLT-FETQMDYKTYLD 78 (160)
Q Consensus 26 ~~F~~lD~d~~G~I~~~el~~~~~--~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~ 78 (160)
..|..+|+||.|.|+..++.+++. ..++..+++-+++.... .+.-++|++|+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~ 4116 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVD 4116 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHH
Confidence 357889999999999999998852 25677788888877664 567789999987
No 124
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=81.79 E-value=1.6 Score=20.74 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=12.7
Q ss_pred ccCCCCccCHHHHHHH
Q psy11348 100 DIKHQGYLDTFTLFYF 115 (160)
Q Consensus 100 D~d~dG~I~~~el~~~ 115 (160)
|.|+||.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 7899999999887654
No 125
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=81.03 E-value=5.2 Score=28.84 Aligned_cols=61 Identities=11% Similarity=0.273 Sum_probs=41.1
Q ss_pred HHHHHHHhhhcCCCCCCcCHHHHhccc------CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHh
Q psy11348 22 LRVYGQYLHLDKNHNGVLSKEELAAYG------TGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLS 82 (160)
Q Consensus 22 ~~l~~~F~~lD~d~~G~I~~~el~~~~------~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~ 82 (160)
..++..|..+-+.+...++-..+.+++ +..++...+.-||..+-. +...|+|++|+.++..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 345556655556666678888877642 335788899999988754 4566999999888764
No 126
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=80.97 E-value=7.9 Score=25.46 Aligned_cols=58 Identities=14% Similarity=0.276 Sum_probs=36.8
Q ss_pred HHHHHHhhhcCCCCCCcCHHHHhccc--------------CCCCCHHHHHHHHHhhcCCCCccchHHHHHHHHh
Q psy11348 23 RVYGQYLHLDKNHNGVLSKEELAAYG--------------TGTLTPVFIERVFQECLTFETQMDYKTYLDFVLS 82 (160)
Q Consensus 23 ~l~~~F~~lD~d~~G~I~~~el~~~~--------------~~~~~~~~v~~i~~~~d~~~g~I~f~eF~~~~~~ 82 (160)
+++-+|.++ .|++|.++...|..++ ..+..+..+...|+.. .....|+-+.|+.++..
T Consensus 4 KyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~-~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 4 KYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV-QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT-TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc-CCCCccCHHHHHHHHHh
Confidence 567788888 8999999999988642 1233567777777754 24567999999998864
No 127
>KOG0998|consensus
Probab=80.68 E-value=2 Score=39.38 Aligned_cols=131 Identities=11% Similarity=0.172 Sum_probs=93.7
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCcCHHHHhccc-CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHh----hh-----
Q psy11348 16 FSATSALRVYGQYLHLDKNHNGVLSKEELAAYG-TGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLS----LE----- 84 (160)
Q Consensus 16 f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~-~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~----~~----- 84 (160)
++.++...+-.+|.-+.+. .|.++-+..+.++ ...++...+.+++...|. .+|.+++.+|...|.. +.
T Consensus 123 ~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~~~p 201 (847)
T KOG0998|consen 123 ITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGNSEP 201 (847)
T ss_pred CCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCCCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhcccCC
Confidence 4566777777888888666 7888888887764 346677778888888875 7888999998665432 11
Q ss_pred --------------------------------------------------------------------------cCC--c
Q psy11348 85 --------------------------------------------------------------------------NKH--E 88 (160)
Q Consensus 85 --------------------------------------------------------------------------~~~--~ 88 (160)
... .
T Consensus 202 ~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vsp~d 281 (847)
T KOG0998|consen 202 VPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVSPSD 281 (847)
T ss_pred CCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccChHH
Confidence 000 1
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhh
Q psy11348 89 PQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLI 158 (160)
Q Consensus 89 ~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~ 158 (160)
..++..+|...|.+++|.|+-.+.+..+.. .|. ..+.+..+-...+..+.|.|++++|.
T Consensus 282 ~~~~~~if~q~d~~~dG~I~s~~~~~~f~~-------~gl----~~~~l~~~w~l~d~~n~~~ls~~ef~ 340 (847)
T KOG0998|consen 282 KQKYSKIFSQVDKDNDGSISSNEARNIFLP-------FGL----SKPRLAHVWLLADTQNTGTLSKDEFA 340 (847)
T ss_pred HHHHHHHHHhccccCCCccccccccccccc-------CCC----ChhhhhhhhhhcchhccCcccccccc
Confidence 124566799999999999999999888754 232 23445677778888999999998763
No 128
>KOG3866|consensus
Probab=78.75 E-value=2.7 Score=34.08 Aligned_cols=92 Identities=17% Similarity=0.110 Sum_probs=57.8
Q ss_pred HHHHhhhcCCCCCCcCHHHHhcccC----C---CCC--------HHHH----HHHHHhhcC-CCCccchHHHHHHHHhhh
Q psy11348 25 YGQYLHLDKNHNGVLSKEELAAYGT----G---TLT--------PVFI----ERVFQECLT-FETQMDYKTYLDFVLSLE 84 (160)
Q Consensus 25 ~~~F~~lD~d~~G~I~~~el~~~~~----~---~~~--------~~~v----~~i~~~~d~-~~g~I~f~eF~~~~~~~~ 84 (160)
..-|.+.|.|+||+++..||.+... . +.+ +.+. +.++..+|. .+.-|+.+||+.....-+
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ke 326 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKE 326 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcc
Confidence 3568889999999999999987531 0 111 1222 234445554 567899999988655433
Q ss_pred cCCcHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHH
Q psy11348 85 NKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQ 122 (160)
Q Consensus 85 ~~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~ 122 (160)
...+. .-|..+ +..-+-|.+||+++=++...+
T Consensus 327 f~~p~----e~WEtl--~q~~~yTeEEL~~fE~e~A~k 358 (442)
T KOG3866|consen 327 FNPPK----EEWETL--GQKKVYTEEELQQFEREYAQK 358 (442)
T ss_pred cCCcc----hhhhhh--cccccccHHHHHHHHHHHHHH
Confidence 32221 223333 567788999999887665443
No 129
>KOG0042|consensus
Probab=78.69 E-value=1.4 Score=38.46 Aligned_cols=59 Identities=19% Similarity=0.212 Sum_probs=46.0
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhh
Q psy11348 91 ALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLI 158 (160)
Q Consensus 91 ~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~ 158 (160)
..+.-|..+|.|+.|+++.+++..++++....+ .++.++++..+++..-.|.+...+|.
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~---------d~~~~~~~l~ea~~~~~g~v~l~e~~ 652 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGW---------DEDRLHEELQEADENLNGFVELREFL 652 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHhhcceeeHHHHH
Confidence 355669999999999999999999998754222 35567778888888778888888864
No 130
>KOG1265|consensus
Probab=78.05 E-value=31 Score=32.05 Aligned_cols=126 Identities=12% Similarity=0.252 Sum_probs=80.7
Q ss_pred hhcCCCCCCcCHHHHhcccCCCCCHHHHHHHHHhhcC---CCCc-----cchHHHHHHHHhhhcCCcHHHHHHHHHHhcc
Q psy11348 30 HLDKNHNGVLSKEELAAYGTGTLTPVFIERVFQECLT---FETQ-----MDYKTYLDFVLSLENKHEPQALQYLFRFLDI 101 (160)
Q Consensus 30 ~lD~d~~G~I~~~el~~~~~~~~~~~~v~~i~~~~d~---~~g~-----I~f~eF~~~~~~~~~~~~~~~l~~~F~~~D~ 101 (160)
.+-.|..|+|....+.+......++.-|+.....+.- ++.. .+|+.|..++..+ .....+..+|..+-.
T Consensus 156 kmqvn~~grip~knI~k~F~~~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~kl---cpR~eie~iF~ki~~ 232 (1189)
T KOG1265|consen 156 KMQVNFEGRIPVKNIIKTFSADKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKL---CPRPEIEEIFRKISG 232 (1189)
T ss_pred hhcccccccccHHHHHHHhhcCCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhc---CCchhHHHHHHHhcc
Confidence 3568899999999988865444445556666655542 2333 4455555544433 344579999999999
Q ss_pred CCCCccCHHHHHHHHHHHHH--HHhhcCCCCCChHhHHHHHHHhcCCCC----CCCeehhhhhc
Q psy11348 102 KHQGYLDTFTLFYFFKAISK--QITESEQEPINFEDVKDEIFDMAKPKD----PSRITLQDLID 159 (160)
Q Consensus 102 d~dG~I~~~el~~~~~~~~~--~~~~~g~~~~~~~~~~~~i~~~~~~~~----~g~it~~eF~~ 159 (160)
++.-++|+++|..++..--. ++..+=..... ...+..+++...+++ .|.++-+-|++
T Consensus 233 ~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~-~~r~~~liekyEp~~~~a~~gqms~dgf~r 295 (1189)
T KOG1265|consen 233 KKKPYLTKEQLVDFLNKKQRDPRLNEILFPPAD-PRRIQSLIEKYEPNSDNAEKGQMSTDGFVR 295 (1189)
T ss_pred CCCccccHHHHHHHHhhhccCcchhhhhcCCCC-HHHHHHHHHHcCCchhhhhccccchhhhHH
Confidence 99999999999999864311 12111122233 334567888887764 67777666654
No 131
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=75.89 E-value=2.3 Score=30.30 Aligned_cols=67 Identities=22% Similarity=0.181 Sum_probs=37.4
Q ss_pred CCCcCHHHHhcccCC-CCCHHHHHHHHHhhc-C-------CCCccchHHHHHHHHhhhcCCc-HHHHHHHHHHhccC
Q psy11348 36 NGVLSKEELAAYGTG-TLTPVFIERVFQECL-T-------FETQMDYKTYLDFVLSLENKHE-PQALQYLFRFLDIK 102 (160)
Q Consensus 36 ~G~I~~~el~~~~~~-~~~~~~v~~i~~~~d-~-------~~g~I~f~eF~~~~~~~~~~~~-~~~l~~~F~~~D~d 102 (160)
=+.||+.||.+.-.. .++..-+..+++.+. . .++.|+|+-|..||..+-.... .+-.+.+|..|=..
T Consensus 5 ~~~lsp~eF~qLq~y~eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred eeccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 367888888865211 234445777777663 1 3568999999999998644334 45678889888443
No 132
>KOG1707|consensus
Probab=75.53 E-value=4 Score=35.77 Aligned_cols=67 Identities=13% Similarity=0.167 Sum_probs=44.9
Q ss_pred cCCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhcccCCCCCHHHHHHHHHhh--cCCCCccchHHHHHH
Q psy11348 13 KNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAYGTGTLTPVFIERVFQEC--LTFETQMDYKTYLDF 79 (160)
Q Consensus 13 ~~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~~~~~~~~~v~~i~~~~--d~~~g~I~f~eF~~~ 79 (160)
...++..-+..+...|..+|.|+||-++..|+..+....+..+...-.+... -...|.++++-|+..
T Consensus 306 s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~~~~~G~ltl~g~l~~ 374 (625)
T KOG1707|consen 306 SVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTVKNERGWLTLNGFLSQ 374 (625)
T ss_pred ceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccceecccceeehhhHHHH
Confidence 4557788889999999999999999999999998643211111111111111 125688999999773
No 133
>KOG1029|consensus
Probab=74.74 E-value=10 Score=34.52 Aligned_cols=131 Identities=13% Similarity=0.206 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCcCHHHHhcc-cCCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhh---------
Q psy11348 16 FSATSALRVYGQYLHLDKNHNGVLSKEELAAY-GTGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLE--------- 84 (160)
Q Consensus 16 f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~-~~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~--------- 84 (160)
-|.++-+.....|..| +-+.|+||-+.-+.+ ++.+++...+.+|++..|. ++|.++-.||.-+|....
T Consensus 10 vT~~Er~K~~~qF~~L-kp~~gfitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~lP 88 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQL-KPGQGFITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQLP 88 (1118)
T ss_pred cchHHHHHHHHHHhcc-CCCCCccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCcCC
Confidence 3567778888999988 778999999988876 5667888899999999884 899999999966543100
Q ss_pred ----c--------------C------------------------------------------------------Cc----
Q psy11348 85 ----N--------------K------------------------------------------------------HE---- 88 (160)
Q Consensus 85 ----~--------------~------------------------------------------------------~~---- 88 (160)
. + ++
T Consensus 89 ~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~~~ 168 (1118)
T KOG1029|consen 89 PVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLPHD 168 (1118)
T ss_pred CCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 0 0 00
Q ss_pred -------------------------HHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHh
Q psy11348 89 -------------------------PQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDM 143 (160)
Q Consensus 89 -------------------------~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~ 143 (160)
..+.+..|+.+|+-..|++|-..-+.++. ..|+ + ...+..|-..
T Consensus 169 ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~-------qS~L---p-q~~LA~IW~L 237 (1118)
T KOG1029|consen 169 SSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALG-------QSGL---P-QNQLAHIWTL 237 (1118)
T ss_pred cchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHH-------hcCC---c-hhhHhhheee
Confidence 01356779999999999999998887753 2332 2 2345677778
Q ss_pred cCCCCCCCeehhhhh
Q psy11348 144 AKPKDPSRITLQDLI 158 (160)
Q Consensus 144 ~~~~~~g~it~~eF~ 158 (160)
.|.++||+++-+||+
T Consensus 238 sDvd~DGkL~~dEfi 252 (1118)
T KOG1029|consen 238 SDVDGDGKLSADEFI 252 (1118)
T ss_pred eccCCCCcccHHHHH
Confidence 899999999999996
No 134
>KOG0998|consensus
Probab=72.09 E-value=3.7 Score=37.68 Aligned_cols=66 Identities=14% Similarity=0.092 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhccc-CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHH
Q psy11348 15 WFSATSALRVYGQYLHLDKNHNGVLSKEELAAYG-TGTLTPVFIERVFQECLT-FETQMDYKTYLDFV 80 (160)
Q Consensus 15 ~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~-~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~ 80 (160)
..+..+...++++|...|.+.+|.|+-.+....+ ..+++...+..++...+. +.+.+++.+|.-.+
T Consensus 276 ~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~ 343 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGLSKPRLAHVWLLADTQNTGTLSKDEFALAM 343 (847)
T ss_pred ccChHHHHHHHHHHHhccccCCCcccccccccccccCCCChhhhhhhhhhcchhccCcccccccchhh
Confidence 5677888999999999999999999999999864 456788889999998885 78999999886544
No 135
>KOG0169|consensus
Probab=71.76 E-value=24 Score=31.88 Aligned_cols=96 Identities=10% Similarity=0.132 Sum_probs=68.4
Q ss_pred HHHHHHHhhhcCCCCCCcCHHHHhcccCCCCCHHHHHHHHHhhcCCCCccchHHHHHHHHhhhc--CCcHHHHHHHHHHh
Q psy11348 22 LRVYGQYLHLDKNHNGVLSKEELAAYGTGTLTPVFIERVFQECLTFETQMDYKTYLDFVLSLEN--KHEPQALQYLFRFL 99 (160)
Q Consensus 22 ~~l~~~F~~lD~d~~G~I~~~el~~~~~~~~~~~~v~~i~~~~d~~~g~I~f~eF~~~~~~~~~--~~~~~~l~~~F~~~ 99 (160)
..++..|...|..++|.+...++..+......++++..+|..+-.+.+.++.++...|+..... ..+......+.+.+
T Consensus 172 ~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~f~~~s~~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~ 251 (746)
T KOG0169|consen 172 SKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFLFVQYSHGKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERY 251 (746)
T ss_pred HHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHHHHHHhCCCCccCHHHHHHHHHHhcccccccHHHHHHHHHHh
Confidence 4567888888999999999999998743322333899999887666889999999999887532 23333344444333
Q ss_pred ----ccCCCCccCHHHHHHHHH
Q psy11348 100 ----DIKHQGYLDTFTLFYFFK 117 (160)
Q Consensus 100 ----D~d~dG~I~~~el~~~~~ 117 (160)
..-..+.++.+.|.+++-
T Consensus 252 e~~k~~~~~~~l~ldgF~~yL~ 273 (746)
T KOG0169|consen 252 EPSKEFRRHGLLSLDGFTRYLF 273 (746)
T ss_pred hhhhhccccceecHHHHHHHhc
Confidence 233678899999988874
No 136
>PLN02228 Phosphoinositide phospholipase C
Probab=66.47 E-value=36 Score=29.95 Aligned_cols=66 Identities=20% Similarity=0.395 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHhhcCCCCccchHHHHHHHHhhhcC--CcHHHHHHHHHHhccC----CCCccCHHHHHHHHH
Q psy11348 51 TLTPVFIERVFQECLTFETQMDYKTYLDFVLSLENK--HEPQALQYLFRFLDIK----HQGYLDTFTLFYFFK 117 (160)
Q Consensus 51 ~~~~~~v~~i~~~~d~~~g~I~f~eF~~~~~~~~~~--~~~~~l~~~F~~~D~d----~dG~I~~~el~~~~~ 117 (160)
..++++|.+||..+-. ++.|+.++|..|+...... .+...+..+|+.|-.. ..|.++.+.|..++.
T Consensus 20 ~~~~~ei~~if~~~s~-~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 20 REPPVSIKRLFEAYSR-NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CCCcHHHHHHHHHhcC-CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 4477899999988753 3579999999998765432 2344566677766432 347899999888874
No 137
>KOG1955|consensus
Probab=65.45 E-value=27 Score=30.29 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHhccCCCCccCHHHHHHHHHH
Q psy11348 88 EPQALQYLFRFLDIKHQGYLDTFTLFYFFKA 118 (160)
Q Consensus 88 ~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~ 118 (160)
....+..+|.+.|.|.||-++.+||+..|.=
T Consensus 263 pi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 263 PIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred chHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 3468999999999999999999999987753
No 138
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=65.21 E-value=7.4 Score=27.20 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhcC---CCCccchHHHHHHHHhhh------cCC--c-H---------HHHHHHHHHhccCCCCccCHHHH
Q psy11348 54 PVFIERVFQECLT---FETQMDYKTYLDFVLSLE------NKH--E-P---------QALQYLFRFLDIKHQGYLDTFTL 112 (160)
Q Consensus 54 ~~~v~~i~~~~d~---~~g~I~f~eF~~~~~~~~------~~~--~-~---------~~l~~~F~~~D~d~dG~I~~~el 112 (160)
-.-+..+|....- .+..|+..+....+.... .+. . + --+.|+..+||.+++|.|+.-.+
T Consensus 40 l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~ 119 (127)
T PF09068_consen 40 LSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSF 119 (127)
T ss_dssp HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHH
T ss_pred HHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHH
Confidence 3345555555431 255677777766555321 111 1 1 13789999999999999999999
Q ss_pred HHHHH
Q psy11348 113 FYFFK 117 (160)
Q Consensus 113 ~~~~~ 117 (160)
+..+.
T Consensus 120 KvaL~ 124 (127)
T PF09068_consen 120 KVALI 124 (127)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 139
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=60.85 E-value=43 Score=21.73 Aligned_cols=78 Identities=17% Similarity=0.121 Sum_probs=45.8
Q ss_pred CCCCcCHHHHhcc---c-CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhcCCcH---HHHHHHHHHhccCCCCc
Q psy11348 35 HNGVLSKEELAAY---G-TGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLENKHEP---QALQYLFRFLDIKHQGY 106 (160)
Q Consensus 35 ~~G~I~~~el~~~---~-~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~~~~~---~~l~~~F~~~D~d~dG~ 106 (160)
-||.++..|...+ + ....++....++...+.. .....++.+|...+.......+. .-+..+|.+- -.||.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA--~ADG~ 89 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIA--YADGE 89 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHcCC
Confidence 4789999998865 1 223344444555544432 23337788887766543222222 2366777776 34789
Q ss_pred cCHHHHHH
Q psy11348 107 LDTFTLFY 114 (160)
Q Consensus 107 I~~~el~~ 114 (160)
+++.|-.-
T Consensus 90 ~~~~E~~~ 97 (106)
T cd07316 90 LSEAEREL 97 (106)
T ss_pred CCHHHHHH
Confidence 99988653
No 140
>KOG2243|consensus
Probab=58.47 E-value=14 Score=36.18 Aligned_cols=55 Identities=13% Similarity=0.231 Sum_probs=38.0
Q ss_pred HHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhcCCCCCCCeehhhhhc
Q psy11348 95 LFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159 (160)
Q Consensus 95 ~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~g~it~~eF~~ 159 (160)
.|+.||.||.|.|++.++...+..... -+..+ ++-++.-+..+.+..++|++|++
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k~---------ytqse-~dfllscae~dend~~~y~dfv~ 4116 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHKH---------YTQSE-IDFLLSCAEADENDMFDYEDFVD 4116 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcccc---------chhHH-HHHHHHhhccCccccccHHHHHH
Confidence 478899999999999999876542211 11222 35566666777778889999874
No 141
>PLN02222 phosphoinositide phospholipase C 2
Probab=57.61 E-value=29 Score=30.67 Aligned_cols=61 Identities=10% Similarity=0.310 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHhhhcCCCCCCcCHHHHhccc---CC--CCCHHHHHHHHHhhcC--CCCccchHHHHHHHHh
Q psy11348 17 SATSALRVYGQYLHLDKNHNGVLSKEELAAYG---TG--TLTPVFIERVFQECLT--FETQMDYKTYLDFVLS 82 (160)
Q Consensus 17 ~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~---~~--~~~~~~v~~i~~~~d~--~~g~I~f~eF~~~~~~ 82 (160)
...++..|+..|. . ++.++.++|..++ +. ..+...+..|++.+.. ..+.++++.|..|+.+
T Consensus 23 ~~~ei~~if~~~~---~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYS---E--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhc---C--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 4556666666553 2 4799999999875 22 3467778888887642 5677999999999875
No 142
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=57.37 E-value=51 Score=21.45 Aligned_cols=66 Identities=11% Similarity=0.170 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHhhcCCCCccchHHHHHHHHhhhcCCcHHHHHHHHHHhccCCCCccCHHHHHHHHH
Q psy11348 52 LTPVFIERVFQECLTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 117 (160)
Q Consensus 52 ~~~~~v~~i~~~~d~~~g~I~f~eF~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~ 117 (160)
++..++..+....=+...-+...+|...+..............+=..+|.=++|+||.=|+.-+.|
T Consensus 4 ITK~eA~~FW~~~Fg~r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 4 ITKAEAAEFWKTSFGKRTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp -SSHHHHHHHHHHHTT-SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred eccHHHHHHHHHHCCCCeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 455667777765434456799999999887655444332223333578999999999999886654
No 143
>COG5097 MED6 RNA polymerase II transcriptional regulation mediator [Transcription]
Probab=57.20 E-value=7.9 Score=28.74 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=28.7
Q ss_pred CCCccchhhhhccCCCCHH---HHHHHHHHHhhhc
Q psy11348 1 LRDEGLSVDRLEKNWFSAT---SALRVYGQYLHLD 32 (160)
Q Consensus 1 ~~~~~~~~~~~~~~~f~~~---~~~~l~~~F~~lD 32 (160)
||||++++--...-++++. |+..+...|+.+|
T Consensus 22 LrteNVLeYFs~SPFydk~sNNeilKMQ~QF~~Ld 56 (210)
T COG5097 22 LRTENVLEYFSGSPFYDKSSNNEILKMQTQFRGLD 56 (210)
T ss_pred CcchhHHHHhcCCCccccccchHHHHHHHHhhccC
Confidence 8999999999999888874 7888899999998
No 144
>KOG2557|consensus
Probab=55.30 E-value=56 Score=27.26 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=45.4
Q ss_pred CCCccchHHHHHHHHhhhcCCcHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHH
Q psy11348 67 FETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQI 123 (160)
Q Consensus 67 ~~g~I~f~eF~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~ 123 (160)
.+-.++++.++-.....+.....+....+....|++++|..+.+.+.+++....+..
T Consensus 71 q~~~~~l~k~~~~~~~~~~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~vlks~ 127 (427)
T KOG2557|consen 71 QDDKMTLEKLVIAKATYEKGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVVLKSV 127 (427)
T ss_pred CCccchHHHHhhHHhhhccCcccHHHHHHHHHHhhccccccchhHHHHHHHHHhhhe
Confidence 345789999877665566666667788889999999999999999999998776543
No 145
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=55.05 E-value=20 Score=27.11 Aligned_cols=32 Identities=31% Similarity=0.278 Sum_probs=26.3
Q ss_pred HHHHhccCCCCccCHHHHHHHHHHHHHHHhhc
Q psy11348 95 LFRFLDIKHQGYLDTFTLFYFFKAISKQITES 126 (160)
Q Consensus 95 ~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~ 126 (160)
+..-+|.|++|.++.+|+..+.+...+.+...
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~~~~~l~~~ 86 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKEIFDNLKEY 86 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHHHHhhhhhc
Confidence 34468999999999999999998887777543
No 146
>KOG0035|consensus
Probab=54.01 E-value=82 Score=29.31 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=43.0
Q ss_pred HHHHHHhhcC-CCCccchHHHHHHHHhhhc-CCc-HHHHHHHHHHh---ccCCCCccCHHHHHHHHHHHHH
Q psy11348 57 IERVFQECLT-FETQMDYKTYLDFVLSLEN-KHE-PQALQYLFRFL---DIKHQGYLDTFTLFYFFKAISK 121 (160)
Q Consensus 57 v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~-~~~-~~~l~~~F~~~---D~d~dG~I~~~el~~~~~~~~~ 121 (160)
+..++...+. ..+.+++++|++.+..... ... +.-+..||++. |.++.|.++..++-..+..-.+
T Consensus 749 lrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 749 LRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred HHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 3444444443 5677999999998776432 222 44577888777 4455688999888887765444
No 147
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=51.38 E-value=5.1 Score=27.73 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=46.6
Q ss_pred CCCCCcCHHHHhcc---c--CCCCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhcCC-cHHHHHHHHHHhccCCCCc
Q psy11348 34 NHNGVLSKEELAAY---G--TGTLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLENKH-EPQALQYLFRFLDIKHQGY 106 (160)
Q Consensus 34 d~~G~I~~~el~~~---~--~~~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~~~-~~~~l~~~F~~~D~d~dG~ 106 (160)
--||.|+.+|...+ + ...+++.....+.+.+.. ..+..++.+|+..+....... ...-++.++.+.- .||.
T Consensus 35 ~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~--ADG~ 112 (140)
T PF05099_consen 35 KADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAY--ADGE 112 (140)
T ss_dssp HTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCT--CTTC
T ss_pred HcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHh--cCCC
Confidence 35899999998865 2 234456667777776653 334677888876554311111 1234777788875 4678
Q ss_pred cCHHHHHH
Q psy11348 107 LDTFTLFY 114 (160)
Q Consensus 107 I~~~el~~ 114 (160)
+++.|-.-
T Consensus 113 ~~~~E~~~ 120 (140)
T PF05099_consen 113 ISPEEQEF 120 (140)
T ss_dssp -SCCHHHH
T ss_pred CCHHHHHH
Confidence 88887653
No 148
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.21 E-value=57 Score=23.43 Aligned_cols=91 Identities=11% Similarity=0.124 Sum_probs=61.2
Q ss_pred HHHHHHHHhhhcCCCCCCcCHHHHhcc---c--CCCCCHHHHHHHHHhhc-CCCCccchHHHHHHHHhhhcCCcHH---H
Q psy11348 21 ALRVYGQYLHLDKNHNGVLSKEELAAY---G--TGTLTPVFIERVFQECL-TFETQMDYKTYLDFVLSLENKHEPQ---A 91 (160)
Q Consensus 21 ~~~l~~~F~~lD~d~~G~I~~~el~~~---~--~~~~~~~~v~~i~~~~d-~~~g~I~f~eF~~~~~~~~~~~~~~---~ 91 (160)
+..---.|+.... ||.++..|..++ + ..+++...+..+..... .+...++|-.|...+.. ..+... -
T Consensus 29 lAa~~Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r--~Ld~e~R~el 104 (148)
T COG4103 29 LAAAALLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKR--HLDEEQRLEL 104 (148)
T ss_pred HHHHHHHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--hcCHHHHHHH
Confidence 3333466777555 468999997764 2 34678888999887764 36778999998775542 223223 3
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHH
Q psy11348 92 LQYLFRFLDIKHQGYLDTFTLFYFFK 117 (160)
Q Consensus 92 l~~~F~~~D~d~dG~I~~~el~~~~~ 117 (160)
+..++++. ..||.++..|-.-+.+
T Consensus 105 i~~mweIa--~ADg~l~e~Ed~vi~R 128 (148)
T COG4103 105 IGLMWEIA--YADGELDESEDHVIWR 128 (148)
T ss_pred HHHHHHHH--HccccccHHHHHHHHH
Confidence 56667776 7789999888765554
No 149
>KOG4004|consensus
Probab=50.95 E-value=14 Score=28.18 Aligned_cols=47 Identities=9% Similarity=0.051 Sum_probs=26.7
Q ss_pred CCCccchHHHHHHHHhhhcCCcHHHHHHHHHHhccCCCCccCHHHHHHH
Q psy11348 67 FETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYF 115 (160)
Q Consensus 67 ~~g~I~f~eF~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~el~~~ 115 (160)
.+|.++-.|..-....+. .-+.-...+|.-+|.|+||+|+.+|-...
T Consensus 201 ~d~~~sh~el~pl~ap~i--pme~c~~~f~e~cd~~nd~~ial~ew~~c 247 (259)
T KOG4004|consen 201 IDGYLSHTELAPLRAPLI--PMEHCTTRFFETCDLDNDKYIALDEWAGC 247 (259)
T ss_pred ccccccccccccccCCcc--cHHhhchhhhhcccCCCCCceeHHHhhcc
Confidence 466676666533211111 11123566778888888888887776543
No 150
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=50.46 E-value=36 Score=17.74 Aligned_cols=24 Identities=4% Similarity=0.058 Sum_probs=15.8
Q ss_pred CCccCHHHHHHHHHHHHHHHhhcC
Q psy11348 104 QGYLDTFTLFYFFKAISKQITESE 127 (160)
Q Consensus 104 dG~I~~~el~~~~~~~~~~~~~~g 127 (160)
.|.|+.+++..+++....-+..+|
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ng 25 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNG 25 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcC
Confidence 577888888777776655554433
No 151
>PLN02230 phosphoinositide phospholipase C 4
Probab=49.81 E-value=88 Score=27.83 Aligned_cols=65 Identities=6% Similarity=0.037 Sum_probs=43.0
Q ss_pred CHHHHHHHHHhhcCCCCccchHHHHHHHHhhhcC---CcHHHHHHHHHHh-------ccCCCCccCHHHHHHHHH
Q psy11348 53 TPVFIERVFQECLTFETQMDYKTYLDFVLSLENK---HEPQALQYLFRFL-------DIKHQGYLDTFTLFYFFK 117 (160)
Q Consensus 53 ~~~~v~~i~~~~d~~~g~I~f~eF~~~~~~~~~~---~~~~~l~~~F~~~-------D~d~dG~I~~~el~~~~~ 117 (160)
++.+|..||..+..+.+.|+.++|..|+...... .+...+..++..+ ..-+.+.++.+.|..++.
T Consensus 27 p~~ei~~lf~~~s~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 27 PVADVRDLFEKYADGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred CcHHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 5678999999886555789999999999875432 1233444444322 122345688888888774
No 152
>PLN02222 phosphoinositide phospholipase C 2
Probab=49.78 E-value=85 Score=27.82 Aligned_cols=65 Identities=14% Similarity=0.217 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHhhcCCCCccchHHHHHHHHhhhcC--CcHHHHHHHHHHhcc-CCCCccCHHHHHHHHH
Q psy11348 52 LTPVFIERVFQECLTFETQMDYKTYLDFVLSLENK--HEPQALQYLFRFLDI-KHQGYLDTFTLFYFFK 117 (160)
Q Consensus 52 ~~~~~v~~i~~~~d~~~g~I~f~eF~~~~~~~~~~--~~~~~l~~~F~~~D~-d~dG~I~~~el~~~~~ 117 (160)
.++.++..||..+.. ++.|+.++|..|+...... .+.+.+..+|+.+.. -..+.++.+.|..++.
T Consensus 22 ~~~~ei~~if~~~~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 22 EAPREIKTIFEKYSE-NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred CCcHHHHHHHHHhcC-CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 356799999998754 5799999999999875542 244556666665421 3467799999988874
No 153
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=48.64 E-value=34 Score=25.33 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHHH
Q psy11348 89 PQALQYLFRFLDIKHQGYLDTFTLFYFFKAI 119 (160)
Q Consensus 89 ~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~ 119 (160)
+++...+|..+++.+.+.+|..|+.++++..
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~n 125 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGN 125 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc
Confidence 6789999999999999999999999998763
No 154
>KOG2871|consensus
Probab=46.92 E-value=29 Score=28.97 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=26.9
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHH
Q psy11348 90 QALQYLFRFLDIKHQGYLDTFTLFYFFKAI 119 (160)
Q Consensus 90 ~~l~~~F~~~D~d~dG~I~~~el~~~~~~~ 119 (160)
+.+++.|+.+|..++|+|+.+-++.++.+.
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~ 338 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTAL 338 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHh
Confidence 579999999999999999999999887654
No 155
>KOG4004|consensus
Probab=44.27 E-value=12 Score=28.45 Aligned_cols=47 Identities=23% Similarity=0.368 Sum_probs=21.2
Q ss_pred HhhhcCC-CCCCcCHHHHhcccCCCCC-HHHHHHHHHhhcC-CCCccchH
Q psy11348 28 YLHLDKN-HNGVLSKEELAAYGTGTLT-PVFIERVFQECLT-FETQMDYK 74 (160)
Q Consensus 28 F~~lD~d-~~G~I~~~el~~~~~~~~~-~~~v~~i~~~~d~-~~g~I~f~ 74 (160)
|.++|.. .||++|-.||.-+....++ +.-+.++|+.+|. +++.|...
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~ipme~c~~~f~e~cd~~nd~~ial~ 242 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALD 242 (259)
T ss_pred eccccCCCccccccccccccccCCcccHHhhchhhhhcccCCCCCceeHH
Confidence 4444432 3555555555543222122 2234555555553 45555443
No 156
>PLN02228 Phosphoinositide phospholipase C
Probab=43.92 E-value=78 Score=27.93 Aligned_cols=62 Identities=18% Similarity=0.367 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHhhhcCCCCCCcCHHHHhccc---CC--CCCHHHHHHHHHhhcC-----CCCccchHHHHHHHHhh
Q psy11348 17 SATSALRVYGQYLHLDKNHNGVLSKEELAAYG---TG--TLTPVFIERVFQECLT-----FETQMDYKTYLDFVLSL 83 (160)
Q Consensus 17 ~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~---~~--~~~~~~v~~i~~~~d~-----~~g~I~f~eF~~~~~~~ 83 (160)
...++..|+..+.. ++.++.++|..++ +. ..+...+..++..+.. ..+.++.+.|..|+.+.
T Consensus 22 ~~~ei~~if~~~s~-----~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 22 PPVSIKRLFEAYSR-----NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CcHHHHHHHHHhcC-----CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 55677776666542 3589999999875 22 2355678888887742 34679999999998753
No 157
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=43.71 E-value=14 Score=22.64 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=19.4
Q ss_pred HHhccCCCCccCHHHHHHHHHH
Q psy11348 97 RFLDIKHQGYLDTFTLFYFFKA 118 (160)
Q Consensus 97 ~~~D~d~dG~I~~~el~~~~~~ 118 (160)
++||...+.|||.++++.+.++
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 5789999999999999998753
No 158
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=41.47 E-value=56 Score=23.53 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=34.0
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhc
Q psy11348 92 LQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMA 144 (160)
Q Consensus 92 l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~ 144 (160)
+..=-..+|..+-||+|.+||+.++=.+-..+. ..+|.++.+.++-...
T Consensus 71 L~~rL~~le~~rg~Y~TiSeLKT~vy~i~q~l~----~~~P~Ee~Lrql~~~~ 119 (148)
T PF12486_consen 71 LADRLNQLEEQRGKYMTISELKTAVYQIQQSLN----QSVPLEEQLRQLQQQK 119 (148)
T ss_pred HHHHHHHHHHhcCCceeHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHH
Confidence 333346678888889999999998876655442 2467788777665553
No 159
>PLN02230 phosphoinositide phospholipase C 4
Probab=40.67 E-value=79 Score=28.09 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=40.4
Q ss_pred HHHHHHhhhcCCCCCCcCHHHHhccc---CC---CCCHHHHHHHHHhhcC--------CCCccchHHHHHHHHh
Q psy11348 23 RVYGQYLHLDKNHNGVLSKEELAAYG---TG---TLTPVFIERVFQECLT--------FETQMDYKTYLDFVLS 82 (160)
Q Consensus 23 ~l~~~F~~lD~d~~G~I~~~el~~~~---~~---~~~~~~v~~i~~~~d~--------~~g~I~f~eF~~~~~~ 82 (160)
.++.+|..+- .+.+.++.++|..++ +. ..+...+.+++..+-. ..+.++++.|..|+.+
T Consensus 30 ei~~lf~~~s-~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 30 DVRDLFEKYA-DGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHh-CCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 4555666663 444899999999986 21 2356667777765421 2456999999999875
No 160
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=39.94 E-value=1.3e+02 Score=20.94 Aligned_cols=99 Identities=10% Similarity=0.143 Sum_probs=57.3
Q ss_pred HHHHhhcCCCCccchHHHHHHHHh--hhc-----CCcHHHHHHHHHHhccCC--CCccCHHHHHHHHHHHHHHHhh-cCC
Q psy11348 59 RVFQECLTFETQMDYKTYLDFVLS--LEN-----KHEPQALQYLFRFLDIKH--QGYLDTFTLFYFFKAISKQITE-SEQ 128 (160)
Q Consensus 59 ~i~~~~d~~~g~I~f~eF~~~~~~--~~~-----~~~~~~l~~~F~~~D~d~--dG~I~~~el~~~~~~~~~~~~~-~g~ 128 (160)
++++.+ ..=+.|-|..|..++.. +.+ .-+-..+..+|+..-.+. +..|+..++..++.+++..+.+ .+.
T Consensus 4 ~l~~~l-~~~n~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~ 82 (127)
T PF09068_consen 4 ELMQEL-QDFNNIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPT 82 (127)
T ss_dssp HHHHHG-GGGTT-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHH-HHHhhHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 445544 23356888888776542 221 112346777887776654 4789999999999999977653 222
Q ss_pred -CC-------CChHhHHHHHHHhcCCCCCCCeehhhhh
Q psy11348 129 -EP-------INFEDVKDEIFDMAKPKDPSRITLQDLI 158 (160)
Q Consensus 129 -~~-------~~~~~~~~~i~~~~~~~~~g~it~~eF~ 158 (160)
.. ...+-.+..+....|+...|+|+.-.|+
T Consensus 83 ~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~K 120 (127)
T PF09068_consen 83 LHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFK 120 (127)
T ss_dssp S--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHH
T ss_pred CCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHH
Confidence 11 1123455666777899999999876664
No 161
>KOG4347|consensus
Probab=39.29 E-value=49 Score=29.52 Aligned_cols=29 Identities=31% Similarity=0.337 Sum_probs=24.8
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHH
Q psy11348 91 ALQYLFRFLDIKHQGYLDTFTLFYFFKAI 119 (160)
Q Consensus 91 ~l~~~F~~~D~d~dG~I~~~el~~~~~~~ 119 (160)
-+...|+.+|..++|.|+..++-.-+..+
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l 584 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSIL 584 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHH
Confidence 47888999999999999999888776554
No 162
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=38.34 E-value=1e+02 Score=19.41 Aligned_cols=79 Identities=16% Similarity=0.116 Sum_probs=40.9
Q ss_pred CCCCcCHHHHhccc----CC-CCCHHHHHHHHHhhcC-CCCccchHHHHHHHHhhhcC-CcHHHHHHHHHHhccCCCCcc
Q psy11348 35 HNGVLSKEELAAYG----TG-TLTPVFIERVFQECLT-FETQMDYKTYLDFVLSLENK-HEPQALQYLFRFLDIKHQGYL 107 (160)
Q Consensus 35 ~~G~I~~~el~~~~----~~-~~~~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~~-~~~~~l~~~F~~~D~d~dG~I 107 (160)
-||.|+.+|...+. .. .+++....++...+.. ....-+...+...+...... ....-++.+..+. ..||.+
T Consensus 12 aDG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~ia--~aDG~~ 89 (104)
T cd07177 12 ADGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPLAEAGDLAALAALLKELPDAELREALLAALWEVA--LADGEL 89 (104)
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HhccCC
Confidence 48999999988752 11 2234444444443321 10022344444433322211 1123466667776 678899
Q ss_pred CHHHHHHH
Q psy11348 108 DTFTLFYF 115 (160)
Q Consensus 108 ~~~el~~~ 115 (160)
++.|.+.+
T Consensus 90 ~~~E~~~l 97 (104)
T cd07177 90 DPEERALL 97 (104)
T ss_pred CHHHHHHH
Confidence 98887644
No 163
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=37.21 E-value=37 Score=21.56 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=21.8
Q ss_pred CCCCCcCHHHHhcccC-CCCCHHHHHHHHHhhc
Q psy11348 34 NHNGVLSKEELAAYGT-GTLTPVFIERVFQECL 65 (160)
Q Consensus 34 d~~G~I~~~el~~~~~-~~~~~~~v~~i~~~~d 65 (160)
...|+||++++..++. ..+++..+..++..+.
T Consensus 17 K~~G~lT~~eI~~~L~~~~~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 17 KKKGYLTYDEINDALPEDDLDPEQIDEIYDTLE 49 (82)
T ss_dssp HHHSS-BHHHHHHH-S-S---HHHHHHHHHHHH
T ss_pred hhcCcCCHHHHHHHcCccCCCHHHHHHHHHHHH
Confidence 3578999999998864 3567888999888764
No 164
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=36.00 E-value=78 Score=17.98 Aligned_cols=45 Identities=22% Similarity=0.166 Sum_probs=29.9
Q ss_pred cCCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhccc-CCCCCHHHHHHHHH
Q psy11348 13 KNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAYG-TGTLTPVFIERVFQ 62 (160)
Q Consensus 13 ~~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~-~~~~~~~~v~~i~~ 62 (160)
.+.||.+++..|...|.. +..++.++...+. ..+++...|..-|.
T Consensus 4 r~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~l~~~~V~~WF~ 49 (57)
T PF00046_consen 4 RTRFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELGLTERQVKNWFQ 49 (57)
T ss_dssp SSSSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-----hccccccccccccccccccccccccCHH
Confidence 467899999999998874 4466666666542 22456666665554
No 165
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=34.94 E-value=85 Score=19.33 Aligned_cols=49 Identities=18% Similarity=0.095 Sum_probs=30.2
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhc
Q psy11348 91 ALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMA 144 (160)
Q Consensus 91 ~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~ 144 (160)
.+..+...++...+--+-..+|+..+..+++-+ | ....+++++.||..+
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~It---G--~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEIT---G--EVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHC---T--SS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh---C--CCChHHHHHHHHHhh
Confidence 466666666544444555677888877776543 3 256799999998764
No 166
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=33.45 E-value=2.4e+02 Score=22.20 Aligned_cols=84 Identities=13% Similarity=0.095 Sum_probs=50.2
Q ss_pred CCCCCCcCHHHHhcc---c-CCCCCHHH---HHHHHHhhcCCCCccchHHHHHHHHhhhcCCcHHH----HHHHHHHhcc
Q psy11348 33 KNHNGVLSKEELAAY---G-TGTLTPVF---IERVFQECLTFETQMDYKTYLDFVLSLENKHEPQA----LQYLFRFLDI 101 (160)
Q Consensus 33 ~d~~G~I~~~el~~~---~-~~~~~~~~---v~~i~~~~d~~~g~I~f~eF~~~~~~~~~~~~~~~----l~~~F~~~D~ 101 (160)
..-||.|+..|+... + ...+++.. +.++|.. ......++.+|+.-+..... ..++. +...|.+-
T Consensus 66 AkADG~Vse~Ei~~~~~l~~~~~l~~~~r~~a~~lf~~--~k~~~~~l~~~~~~~~~~~~-~r~~l~~~lL~~l~~vA-- 140 (267)
T PRK09430 66 AKAKGRVTEADIRIASQLMDRMNLHGEARRAAQQAFRE--GKEPDFPLREKLRQFRSVCG-GRFDLLRMFLEIQIQAA-- 140 (267)
T ss_pred HhcCCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hcccCCCHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHH--
Confidence 455899999999853 1 23456655 5555543 23445888999876554322 22222 25556665
Q ss_pred CCCCccCHHHHHHHHHHHHHH
Q psy11348 102 KHQGYLDTFTLFYFFKAISKQ 122 (160)
Q Consensus 102 d~dG~I~~~el~~~~~~~~~~ 122 (160)
=-||.+++.|- .+++.+...
T Consensus 141 ~ADG~l~~~E~-~~L~~Ia~~ 160 (267)
T PRK09430 141 FADGSLHPNER-QVLYVIAEE 160 (267)
T ss_pred HhcCCCCHHHH-HHHHHHHHH
Confidence 35688999884 455555543
No 167
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=33.19 E-value=51 Score=19.13 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=24.0
Q ss_pred HHhhhcCCCCCCcCHHHHhcccC-CCCC-HHHHHHHHHh
Q psy11348 27 QYLHLDKNHNGVLSKEELAAYGT-GTLT-PVFIERVFQE 63 (160)
Q Consensus 27 ~F~~lD~d~~G~I~~~el~~~~~-~~~~-~~~v~~i~~~ 63 (160)
+|+.+.+.++|.+|..|+...+. .+.+ ...++||+..
T Consensus 11 I~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~ 49 (51)
T PF08100_consen 11 IPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRL 49 (51)
T ss_dssp HHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHH
T ss_pred cHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 46667667778999999988655 3332 4577777653
No 168
>PLN02223 phosphoinositide phospholipase C
Probab=32.75 E-value=1.2e+02 Score=26.51 Aligned_cols=59 Identities=10% Similarity=-0.027 Sum_probs=41.9
Q ss_pred HHHHHHhhhcCCCCCCcCHHHHhccc--------CCCCCHHHHHHHHHhhcC---------CCCccchHHHHHHHHh
Q psy11348 23 RVYGQYLHLDKNHNGVLSKEELAAYG--------TGTLTPVFIERVFQECLT---------FETQMDYKTYLDFVLS 82 (160)
Q Consensus 23 ~l~~~F~~lD~d~~G~I~~~el~~~~--------~~~~~~~~v~~i~~~~d~---------~~g~I~f~eF~~~~~~ 82 (160)
.+..+|..+ ..+.|..+.+.|..++ ....+...+++|+..+-. ..+.++++.|..|+.+
T Consensus 17 ~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 17 LILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 345556555 4778899999999875 124567777888776532 2367999999999876
No 169
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=32.26 E-value=25 Score=22.98 Aligned_cols=16 Identities=13% Similarity=0.191 Sum_probs=14.0
Q ss_pred ccCCCCccCHHHHHHH
Q psy11348 100 DIKHQGYLDTFTLFYF 115 (160)
Q Consensus 100 D~d~dG~I~~~el~~~ 115 (160)
|-|+.|.||++.|+++
T Consensus 69 ddD~gGWITPsNIkqi 84 (87)
T PF15017_consen 69 DDDGGGWITPSNIKQI 84 (87)
T ss_pred cCCCCccccchhhhhh
Confidence 5689999999999976
No 170
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=29.72 E-value=61 Score=22.43 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHhhc-CCCCccchHHHHHHH
Q psy11348 51 TLTPVFIERVFQECL-TFETQMDYKTYLDFV 80 (160)
Q Consensus 51 ~~~~~~v~~i~~~~d-~~~g~I~f~eF~~~~ 80 (160)
.++++..++++.++- +..|.|.|.||+.-+
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kf 33 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKF 33 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHc
Confidence 367889999999885 478999999998744
No 171
>KOG1265|consensus
Probab=29.44 E-value=3.5e+02 Score=25.64 Aligned_cols=69 Identities=14% Similarity=0.270 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHH----------HHHhhhcCCCCCCcCHHHHhcccC-------------CCCCHHHHHHHHHhhcC----
Q psy11348 14 NWFSATSALRVY----------GQYLHLDKNHNGVLSKEELAAYGT-------------GTLTPVFIERVFQECLT---- 66 (160)
Q Consensus 14 ~~f~~~~~~~l~----------~~F~~lD~d~~G~I~~~el~~~~~-------------~~~~~~~v~~i~~~~d~---- 66 (160)
.-|+.+-++.++ ++|..+-.++.-++|.++|..+++ ....+..++.|++.+..
T Consensus 203 d~f~~e~f~~~l~klcpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~ 282 (1189)
T KOG1265|consen 203 DDFTLEKFYRLLNKLCPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDN 282 (1189)
T ss_pred hhccHHHHHHHHHhcCCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhh
Confidence 456666666655 678888888888999999998752 12356788888888752
Q ss_pred -CCCccchHHHHHHHHh
Q psy11348 67 -FETQMDYKTYLDFVLS 82 (160)
Q Consensus 67 -~~g~I~f~eF~~~~~~ 82 (160)
..|+|+-+-|++|+..
T Consensus 283 a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 283 AEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhccccchhhhHHHhhC
Confidence 5789999999998865
No 172
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=29.35 E-value=1.7e+02 Score=19.97 Aligned_cols=88 Identities=19% Similarity=0.252 Sum_probs=55.5
Q ss_pred HHHHHHHHhhhcCCCCCCcCHHHHhcccCCCCCHHHHHHHHHhhcCCCCccchHHHHHHHHh---hhc-CCcHHHHHHHH
Q psy11348 21 ALRVYGQYLHLDKNHNGVLSKEELAAYGTGTLTPVFIERVFQECLTFETQMDYKTYLDFVLS---LEN-KHEPQALQYLF 96 (160)
Q Consensus 21 ~~~l~~~F~~lD~d~~G~I~~~el~~~~~~~~~~~~v~~i~~~~d~~~g~I~f~eF~~~~~~---~~~-~~~~~~l~~~F 96 (160)
...+.++...+..+-...++.+++...++ +++..+.++|... -.+++.+|+.-+.. ... ..+...+..+-
T Consensus 8 ~~~i~~~~~~I~~~~~~~~sl~~lA~~~g--~S~~~l~r~Fk~~----~G~s~~~~l~~~Rl~~A~~~L~~t~~~i~eIA 81 (127)
T PRK11511 8 AITIHSILDWIEDNLESPLSLEKVSERSG--YSKWHLQRMFKKE----TGHSLGQYIRSRKMTEIAQKLKESNEPILYLA 81 (127)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHC--cCHHHHHHHHHHH----HCcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 34556666777778778899999998776 4777899999864 24888888764322 000 01111122221
Q ss_pred HHhccCCCCccCHHHHHHHHHHH
Q psy11348 97 RFLDIKHQGYLDTFTLFYFFKAI 119 (160)
Q Consensus 97 ~~~D~d~dG~I~~~el~~~~~~~ 119 (160)
. .-|+-+..-+...++..
T Consensus 82 ~-----~~Gf~s~s~F~r~Fkk~ 99 (127)
T PRK11511 82 E-----RYGFESQQTLTRTFKNY 99 (127)
T ss_pred H-----HhCCCCHHHHHHHHHHH
Confidence 1 24777888887777654
No 173
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=29.15 E-value=1.1e+02 Score=17.13 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=33.1
Q ss_pred cCCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhccc-CCCCCHHHHHHHHHh
Q psy11348 13 KNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAYG-TGTLTPVFIERVFQE 63 (160)
Q Consensus 13 ~~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~-~~~~~~~~v~~i~~~ 63 (160)
...|+.++...|...|.. +...+..++..+. ..+++...|..-|..
T Consensus 4 r~~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (59)
T cd00086 4 RTRFTPEQLEELEKEFEK-----NPYPSREEREELAKELGLTERQVKIWFQN 50 (59)
T ss_pred CCcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 457888999999999877 4578888777753 334677777766654
No 174
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=27.23 E-value=91 Score=23.66 Aligned_cols=50 Identities=10% Similarity=0.199 Sum_probs=30.8
Q ss_pred CCCCCcCHHHHhcccCCCCCHHHHHHHHHhhcCCCCccchHHHHHHHHhhhc
Q psy11348 34 NHNGVLSKEELAAYGTGTLTPVFIERVFQECLTFETQMDYKTYLDFVLSLEN 85 (160)
Q Consensus 34 d~~G~I~~~el~~~~~~~~~~~~v~~i~~~~d~~~g~I~f~eF~~~~~~~~~ 85 (160)
|=||.||.++...++.-.+.......+++.. -++.|+|.+.+..|.....
T Consensus 9 DFDGTITl~Ds~~~itdtf~~~e~k~l~~~v--ls~tiS~rd~~g~mf~~i~ 58 (220)
T COG4359 9 DFDGTITLNDSNDYITDTFGPGEWKALKDGV--LSKTISFRDGFGRMFGSIH 58 (220)
T ss_pred cCCCceEecchhHHHHhccCchHHHHHHHHH--hhCceeHHHHHHHHHHhcC
Confidence 4578898888877653323333444555433 4567888888777765433
No 175
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=26.90 E-value=1.3e+02 Score=18.65 Aligned_cols=16 Identities=19% Similarity=0.166 Sum_probs=12.6
Q ss_pred CCCccCHHHHHHHHHH
Q psy11348 103 HQGYLDTFTLFYFFKA 118 (160)
Q Consensus 103 ~dG~I~~~el~~~~~~ 118 (160)
..|+++-+|++.++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 5888888888887744
No 176
>PF05901 Excalibur: Excalibur calcium-binding domain; InterPro: IPR008613 Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognised and the evolution of EF-hand-like domains is probably more complex than previously appreciated [].
Probab=26.45 E-value=31 Score=18.51 Aligned_cols=9 Identities=33% Similarity=0.331 Sum_probs=7.2
Q ss_pred HhccCCCCc
Q psy11348 98 FLDIKHQGY 106 (160)
Q Consensus 98 ~~D~d~dG~ 106 (160)
-+|.|+||+
T Consensus 26 ~LDrD~DGi 34 (37)
T PF05901_consen 26 KLDRDGDGI 34 (37)
T ss_pred cccCCCCCC
Confidence 469999986
No 177
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=26.27 E-value=1.1e+02 Score=19.84 Aligned_cols=78 Identities=13% Similarity=0.055 Sum_probs=40.7
Q ss_pred CCCCcCHHHHhcc---cC--C---CCCHHHHHHHHHhhcCCCCccchHHHHHHHHhhhcCCc-HHHHHHHHHHhccCCCC
Q psy11348 35 HNGVLSKEELAAY---GT--G---TLTPVFIERVFQECLTFETQMDYKTYLDFVLSLENKHE-PQALQYLFRFLDIKHQG 105 (160)
Q Consensus 35 ~~G~I~~~el~~~---~~--~---~~~~~~v~~i~~~~d~~~g~I~f~eF~~~~~~~~~~~~-~~~l~~~F~~~D~d~dG 105 (160)
-||.++.+|...+ +. . ......+..++......-...+..++...+........ ..-+..++.+. .-||
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia--~aDG 92 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALLRPEGLAALLKAAAKLLPPELRETAFAVAVDIA--AADG 92 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HccC
Confidence 4788998887764 21 1 22344455555443211013344556554443222111 12366677777 4568
Q ss_pred ccCHHHHHH
Q psy11348 106 YLDTFTLFY 114 (160)
Q Consensus 106 ~I~~~el~~ 114 (160)
.+++.|..-
T Consensus 93 ~~~~~E~~~ 101 (111)
T cd07176 93 EVDPEERAV 101 (111)
T ss_pred CCCHHHHHH
Confidence 899888653
No 178
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=25.86 E-value=1.8e+02 Score=18.27 Aligned_cols=59 Identities=5% Similarity=0.115 Sum_probs=38.0
Q ss_pred CHHHHHHHHHhhcC-----CCCccchHHHHHHHHhhhcCCcHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHH
Q psy11348 53 TPVFIERVFQECLT-----FETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISK 121 (160)
Q Consensus 53 ~~~~v~~i~~~~d~-----~~g~I~f~eF~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~ 121 (160)
+.+-+..++..+-. +.|.|.-+.|- ....+.++.++.+.- ..+.+|++|+..+..++|.
T Consensus 5 s~ENv~~MIe~Ik~KL~mvN~~~i~~~~f~--------~~~yedl~diy~~V~--~K~~fS~sEm~aI~~ELG~ 68 (71)
T PF06569_consen 5 SQENVEYMIEEIKQKLNMVNAGAIKPEDFS--------EEKYEDLKDIYEMVM--SKDSFSPSEMQAIAEELGQ 68 (71)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHhCCHHhCC--------hhhHHHHHHHHHHHH--hccCCCHHHHHHHHHHHHh
Confidence 44445555555431 45556555552 222457888888874 5888999999998887763
No 179
>PRK13696 hypothetical protein; Provisional
Probab=25.47 E-value=1.7e+02 Score=17.87 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHhhcCCCCccchHHHHHHHHhhhcCCcHHHHHHHHHHhccCCCCccCHHHHHHH
Q psy11348 52 LTPVFIERVFQECLTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYF 115 (160)
Q Consensus 52 ~~~~~v~~i~~~~d~~~g~I~f~eF~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~el~~~ 115 (160)
+++...++|- . ..+..+|.|++.-+. -........+..+| |.++.+|...+
T Consensus 8 I~dd~Y~~L~-~---kk~~~SFSevi~~L~-~~~~~~~~~l~~~~--------Gil~dee~~e~ 58 (62)
T PRK13696 8 ISDDVYEKLL-E---IKGDKSFSEVIRELI-EKKKGNLDKLMKAF--------GILSEEEAEEL 58 (62)
T ss_pred eCHHHHHHHH-H---HhCCCCHHHHHHHHH-HHhhccHHHHHHHH--------CCCCHHHHHHH
Confidence 4555555555 2 235679999998776 22233344555555 44455555544
No 180
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=25.18 E-value=3e+02 Score=20.68 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=23.1
Q ss_pred CCcHHHHHHHHHHhccCCCCccCHHHHHHHHH
Q psy11348 86 KHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 117 (160)
Q Consensus 86 ~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~ 117 (160)
...+.-...+-+.|.+|..|.|+...+..+.+
T Consensus 115 g~~~~l~~lV~~af~~dk~G~l~~~rIl~Lrr 146 (195)
T PF11363_consen 115 GADPELRALVNRAFQVDKEGNLNTSRILGLRR 146 (195)
T ss_pred CCChHHHHHHHHHHhcCCCCCcCHHHHHHHHh
Confidence 33333345556788889999999999887754
No 181
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=24.58 E-value=2.5e+02 Score=24.54 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=24.1
Q ss_pred HHHHhhhcCCCCCCcCHHHHhcccCCCCCHHHHHHHH
Q psy11348 25 YGQYLHLDKNHNGVLSKEELAAYGTGTLTPVFIERVF 61 (160)
Q Consensus 25 ~~~F~~lD~d~~G~I~~~el~~~~~~~~~~~~v~~i~ 61 (160)
|++|...=+||+|.|-.. +..+.+..++..++..+-
T Consensus 50 YeaF~hVLrNgSG~ik~K-i~dif~~~l~~~E~~~La 85 (648)
T COG3855 50 YEAFNHVLRNGSGVIKEK-IRDIFGNELSDTEIKSLA 85 (648)
T ss_pred HHHHHHHHHcCCchHHHH-HHHHhccccchhHHHhhH
Confidence 688998889999988654 666655444444444433
No 182
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=24.35 E-value=2.7e+02 Score=19.86 Aligned_cols=90 Identities=14% Similarity=0.226 Sum_probs=55.4
Q ss_pred HHHHHhh----cCCCCccchHHHHHHHHhh---hcCCcHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHhhcCCCC
Q psy11348 58 ERVFQEC----LTFETQMDYKTYLDFVLSL---ENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEP 130 (160)
Q Consensus 58 ~~i~~~~----d~~~g~I~f~eF~~~~~~~---~~~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~~~~~~g~~~ 130 (160)
+.+|..+ ..+...|+=..|..++... ...-+...+-.+|.-+=..+...|+.+++..++..+.+.. +...
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~---~~~~ 78 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKK---GKDK 78 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHH---SCCC
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHh---hccc
Confidence 3455555 2355679999999988753 2344556788889887556667899999999998876654 2211
Q ss_pred CChHhHHHHHHHhcCCCCCC
Q psy11348 131 INFEDVKDEIFDMAKPKDPS 150 (160)
Q Consensus 131 ~~~~~~~~~i~~~~~~~~~g 150 (160)
.+.+++...|...-.|.-.|
T Consensus 79 ~~~~~~~~kl~~~~~P~~~g 98 (154)
T PF05517_consen 79 SSAEELKEKLTAGGGPSASG 98 (154)
T ss_dssp THHHHHHHHHHTT--SSSSS
T ss_pred ccHHHHHHHHHccCcccccc
Confidence 14566655555554554333
No 183
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=22.94 E-value=83 Score=20.07 Aligned_cols=56 Identities=16% Similarity=0.057 Sum_probs=30.1
Q ss_pred chhhhhccCCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhccc-CCCCCHHHHHHHHHhh
Q psy11348 6 LSVDRLEKNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAYG-TGTLTPVFIERVFQEC 64 (160)
Q Consensus 6 ~~~~~~~~~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~-~~~~~~~~v~~i~~~~ 64 (160)
|-..=...+.|+.+++..|+.+|+.+=..+ .+.++-...+ ......+.+..|.+-+
T Consensus 18 lN~vGLrR~Gfs~~~i~~l~~ayr~l~~~~---~~~~~a~~~l~~~~~~~~~v~~~~~Fi 74 (83)
T PF13720_consen 18 LNLVGLRRRGFSKEEISALRRAYRILFRSG---LTLEEALEELEEEYPDSPEVREIVDFI 74 (83)
T ss_dssp E-HHHHHHTTS-HHHHHHHHHHHHHHHTSS---S-HHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred eeHHHHHHcCCCHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 344445678899999999999999763322 3444433221 1112244566555433
No 184
>KOG2419|consensus
Probab=22.83 E-value=86 Score=28.35 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhcC-CCCccchHHHHHHHHhhhc------CCcHH---HHHHHHHHhccCCC-------------------
Q psy11348 54 PVFIERVFQECLT-FETQMDYKTYLDFVLSLEN------KHEPQ---ALQYLFRFLDIKHQ------------------- 104 (160)
Q Consensus 54 ~~~v~~i~~~~d~-~~g~I~f~eF~~~~~~~~~------~~~~~---~l~~~F~~~D~d~d------------------- 104 (160)
..+..+++...+- .++++.|.+|-+...++.. ....+ .-...|..+|.+|+
T Consensus 436 ~c~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~ 515 (975)
T KOG2419|consen 436 ECFAKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFL 515 (975)
T ss_pred hhhhhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhcccccc
Confidence 4455677776664 6788999999775544321 11111 13345899999999
Q ss_pred ----CccCHHHHHHHHHHH
Q psy11348 105 ----GYLDTFTLFYFFKAI 119 (160)
Q Consensus 105 ----G~I~~~el~~~~~~~ 119 (160)
|.++.+|+..++...
T Consensus 516 ~~s~~~vtVDe~v~ll~~~ 534 (975)
T KOG2419|consen 516 KKSFGVVTVDELVALLALD 534 (975)
T ss_pred ccccCeeEHHHHHHHHHHH
Confidence 999999998887644
No 185
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=22.66 E-value=1.9e+02 Score=22.78 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=30.2
Q ss_pred hhccCCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhcccCC
Q psy11348 10 RLEKNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAYGTG 50 (160)
Q Consensus 10 ~~~~~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~~~~ 50 (160)
++.-+.+|+.|+..+..++..++.| +|.++..++..-.+.
T Consensus 171 q~Ai~tLSySEleAv~~IL~~L~~~-egrlse~eLAerlGV 210 (251)
T TIGR02787 171 QMAINTLSYSELEAVEHIFEELDGN-EGLLVASKIADRVGI 210 (251)
T ss_pred HHHHHhccHhHHHHHHHHHHHhccc-cccccHHHHHHHHCC
Confidence 4445678888888888888887543 578888888886664
No 186
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=22.61 E-value=52 Score=22.36 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=19.3
Q ss_pred HHhccCCCCccCHHHHHHHHHH
Q psy11348 97 RFLDIKHQGYLDTFTLFYFFKA 118 (160)
Q Consensus 97 ~~~D~d~dG~I~~~el~~~~~~ 118 (160)
+.||...+-|||.++++.++++
T Consensus 10 RLYDT~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVRE 31 (107)
T ss_pred cccCCCccceeeHHHHHHHHHC
Confidence 5789999999999999998753
No 187
>TIGR03112 6_pyr_pter_rel 6-pyruvoyl tetrahydropterin synthase-related domain. Members of this family are small proteins, or small domains of larger proteins, that occur in certain Firmicutes in the same regions as members of families TIGR03110 and TIGR03111. Members of TIGR03110 resemble exosortase, a proposed protein sorting transpeptidase (see TIGR02602). TIGR03111 represents a small clade among the group 2 glycosyltransferases. Members of the current protein family resemble eukaryotic known and prokaryotic predicted 6-pyruvoyl tetrahydropterin synthases.
Probab=22.39 E-value=97 Score=21.06 Aligned_cols=44 Identities=14% Similarity=0.056 Sum_probs=28.9
Q ss_pred CCccCHHHHHHHHHHHHHHHhhc--C----C--CCCChHhHHHHHHHhcCCC
Q psy11348 104 QGYLDTFTLFYFFKAISKQITES--E----Q--EPINFEDVKDEIFDMAKPK 147 (160)
Q Consensus 104 dG~I~~~el~~~~~~~~~~~~~~--g----~--~~~~~~~~~~~i~~~~~~~ 147 (160)
+|+|+..+|+.+++++.+.+... + . ..+|.|.++..+++.+.+.
T Consensus 38 ~g~vDf~~lk~~l~~v~~~~DH~~LNdv~~f~~~~PTaEniA~~i~~~l~~~ 89 (113)
T TIGR03112 38 DKFILFNDVEKKVEKYLKPYQNKYLNDLEPFDKINPTLENIGDYFFDEIKKL 89 (113)
T ss_pred CeEEEHHHHHHHHHHHHHcCCCceeccCCccCCCCCCHHHHHHHHHHHHHHh
Confidence 57888888888887766655311 1 1 1367788888888776543
No 188
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=21.94 E-value=90 Score=22.19 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=17.2
Q ss_pred ccCCCCHHHHHHHHHHHhhh
Q psy11348 12 EKNWFSATSALRVYGQYLHL 31 (160)
Q Consensus 12 ~~~~f~~~~~~~l~~~F~~l 31 (160)
...-||++|++.|+..|..+
T Consensus 7 l~~GFS~~eI~~LR~QF~~~ 26 (140)
T PF13373_consen 7 LSAGFSPEEIQDLRSQFHSI 26 (140)
T ss_pred HHcCCCHHHHHHHHHHHHHH
Confidence 35579999999999999875
No 189
>KOG4403|consensus
Probab=21.76 E-value=78 Score=27.04 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=24.1
Q ss_pred hccCCCCHHHHHHHHHHHhhhcCCCCCCcCHHHHhcc
Q psy11348 11 LEKNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAY 47 (160)
Q Consensus 11 ~~~~~f~~~~~~~l~~~F~~lD~d~~G~I~~~el~~~ 47 (160)
.+...|+.+.++.|.+ .+|.|++|.|+.+|=..+
T Consensus 60 s~~dklg~EAir~iHr---qmDDD~nG~Id~~ESdeF 93 (575)
T KOG4403|consen 60 SEQDKLGYEAIRDIHR---QMDDDHNGSIDVEESDEF 93 (575)
T ss_pred cccchhhHHHHHHHHH---hcccccCCCcccccchHH
Confidence 3456677776655554 599999999998875544
No 190
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=21.57 E-value=2.4e+02 Score=18.31 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=38.8
Q ss_pred CccchHHHHHHHHhhhcCCcHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHH
Q psy11348 69 TQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISK 121 (160)
Q Consensus 69 g~I~f~eF~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~ 121 (160)
..||..|++.|...+.-.-++..+..+..++=.+.=.....++-..+++++..
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~ 65 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAK 65 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 46888888888776655556677788888886666677777887777776543
No 191
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=21.10 E-value=2e+02 Score=17.86 Aligned_cols=47 Identities=9% Similarity=0.114 Sum_probs=28.7
Q ss_pred ccchHHHHHHHHhhhcCCcHHHHHHHHHHhccCCCCccCHHHHHHHHHHH
Q psy11348 70 QMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAI 119 (160)
Q Consensus 70 ~I~f~eF~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~ 119 (160)
.+.|...+..+... -.+.....+...|+.=..+.|+.++|-..++.+
T Consensus 8 ~~~F~~L~~~l~~~---l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 8 WMPFPMLFSALSKH---LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred cccHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 45555555544432 223445555555555578899999988887754
No 192
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=20.06 E-value=3.7e+02 Score=24.80 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHH-------HHhhcCCCCCChHhHHHHHHHhc
Q psy11348 88 EPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISK-------QITESEQEPINFEDVKDEIFDMA 144 (160)
Q Consensus 88 ~~~~l~~~F~~~D~d~dG~I~~~el~~~~~~~~~-------~~~~~g~~~~~~~~~~~~i~~~~ 144 (160)
+++.+..++++++ +|.||..-.+.++..+.+ -+...|...++.++.+..+++++
T Consensus 663 ~pe~LaeLv~lV~---~g~IS~~~AK~VL~~m~~~~~~p~~IIee~GL~qisDe~~Le~iV~eV 723 (771)
T PRK14703 663 TPAALARLVALVD---AGRISTRIAKDVLAELAASGGDPEAIVEAKGLEQVSDAGALEPIVEEV 723 (771)
T ss_pred CHHHHHHHHHHHH---cCCccHHHHHHHHHHHHhcCCCHHHHHHhcCCcccCCHHHHHHHHHHH
Confidence 3566777777775 788888888888776642 22345666666655555555554
Done!