RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11348
         (160 letters)



>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
           transduction mechanisms / Cytoskeleton / Cell division
           and chromosome partitioning / General function
           prediction only].
          Length = 160

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 22/133 (16%), Positives = 57/133 (42%), Gaps = 13/133 (9%)

Query: 31  LDKNHNGVLSKEELAAYGT---GTLTPVFIERVFQECLTFETQMDYKTYLDFV-LSLENK 86
            D++ +G++ + EL           +   I ++F+E       +D+  +L  + + L+  
Sbjct: 29  FDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKRG 88

Query: 87  HEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKP 146
            + + L+  F+  D  H GY+    L    K++ +++++        E+V+  + +  + 
Sbjct: 89  DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSD--------EEVEKLLKEYDED 140

Query: 147 KDPSRITLQDLID 159
            D   I  ++   
Sbjct: 141 GD-GEIDYEEFKK 152


>gnl|CDD|204523 pfam10591, SPARC_Ca_bdg, Secreted protein acidic and rich in
          cysteine Ca binding region.  The SPARC_Ca_bdg domain of
          Secreted Protein Acidic and Rich in Cysteine is
          responsible for the anti-spreading activity of human
          urothelial cells. It is rich in alpha-helices. This
          extracellular calcium-binding domain contains two
          EF-hands that each coordinates one Ca2+ ion, forming a
          helix-loop-helix structure that not only drives the
          conformation of the protein but is also necessary for
          biological activity. The anti-spreading activity was
          dependent on the coordination of Ca2+ by a Glu residue
          at the Z position of EF-hand 2.
          Length = 112

 Score = 29.6 bits (67), Expect = 0.34
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 30 HLDKNHNGVLSKEELAA 46
           LD NH+G LS+ ELA 
Sbjct: 61 QLDTNHDGYLSRSELAP 77


>gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase.
          Length = 805

 Score = 30.2 bits (68), Expect = 0.49
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 9/52 (17%)

Query: 18  ATSALRVYGQ---------YLHLDKNHNGVLSKEELAAYGTGTLTPVFIERV 60
           AT+AL++ G+         + +  +NHN VL   E A         V IE  
Sbjct: 106 ATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEA 157


>gnl|CDD|215488 PLN02901, PLN02901, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
          Length = 214

 Score = 28.9 bits (65), Expect = 1.0
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 3/22 (13%)

Query: 103 HQGYLDTFTLFYF---FKAISK 121
           HQ +LD +TLF+    FK ISK
Sbjct: 58  HQSFLDIYTLFHLGRPFKFISK 79


>gnl|CDD|233776 TIGR02198, rfaE_dom_I, rfaE bifunctional protein, domain I.  RfaE
           is a protein involved in the biosynthesis of
           ADP-L-glycero-D-manno-heptose, a precursor for LPS inner
           core biosynthesis. RfaE is a bifunctional protein in E.
           coli, and separate proteins in some other genome. The
           longer, N-terminal domain I (this family) is suggested
           to act in D-glycero-D-manno-heptose 1-phosphate
           biosynthesis, while domain II (TIGR02199) adds ADP to
           yield ADP-D-glycero-D-manno-heptose [Cell envelope,
           Biosynthesis and degradation of surface polysaccharides
           and lipopolysaccharides].
          Length = 315

 Score = 28.7 bits (65), Expect = 1.2
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 6   LSVDRLEKNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAYGTGTLTPVFIERVFQEC 64
           L VD  E++  +A    R+         + + V+    L+ Y  G LTP  ++ V    
Sbjct: 115 LRVDFEERDPINAELEARLLAAIREQLASADAVV----LSDYAKGVLTPRVVQEVIAAA 169


>gnl|CDD|240150 cd05023, S-100A11, S-100A11: S-100A11 domain found in proteins
           similar to S100A11. S100A11 is a member of the S-100
           domain family within EF-hand Ca2+-binding proteins
           superfamily. Note that the S-100 hierarchy, to which
           this S-100A11 group belongs, contains only S-100 EF-hand
           domains, other EF-hands have been modeled separately.
           S100 proteins exhibit unique patterns of tissue- and
           cell type-specific expression and have been implicated
           in the Ca2+-dependent regulation of diverse
           physiological processes, including cell cycle
           regulation, differentiation, growth, and metabolic
           control . S100 proteins have also been associated with a
           variety of pathological events, including neoplastic
           transformation and neurodegenerative diseases such as
           Alzheimer's, usually via over expression of the protein.
           S100A11 is expressed in smooth muscle and other tissues
           and involves in calcium-dependent membrane aggregation,
           which is important for cell vesiculation . As is the
           case for many other S100 proteins, S100A11 is homodimer,
           which is able to form a heterodimer with S100B through
           subunit exchange. Ca2+ binding to S100A11 results in a
           conformational change in the protein, exposing a
           hydrophobic surface that interacts with target proteins.
           In addition to binding to annexin A1 and A6  S100A11
           also interacts with actin  and transglutaminase.
          Length = 89

 Score = 27.0 bits (60), Expect = 1.8
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 59  RVFQECLTFE---TQMDYKTYLDFVLS-----LENKHEPQALQYLFRFLDIKHQGYLD 108
            VFQ+    +    Q+    +L F+ +      +N+ +P  L  + + LD+   G LD
Sbjct: 13  AVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLD 70


>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase.
          Length = 335

 Score = 28.4 bits (63), Expect = 1.9
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 113 FYFFKAISKQI-----TESEQEPINFEDVKDEIFDMAKPKDP 149
           F FFK I+  +     T+ EQE I F  +   + D A P DP
Sbjct: 48  FGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPPDP 89


>gnl|CDD|215388 PLN02729, PLN02729, PSII-Q subunit.
          Length = 220

 Score = 27.5 bits (61), Expect = 2.5
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 9/74 (12%)

Query: 80  VLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDE 139
           +L+LE+   P  L Y+ ++L +K      TF ++Y F  +       +++P+   D+ + 
Sbjct: 130 LLALEDLIGPDTLNYVRKYLRLK-----STF-MYYDFDKLISAAPVDDKQPLT--DLANR 181

Query: 140 IFD-MAKPKDPSRI 152
           +FD   K +D S+ 
Sbjct: 182 LFDNFEKLEDASKR 195


>gnl|CDD|149409 pfam08337, Plexin_cytopl, Plexin cytoplasmic RasGAP domain.  This
           family features the C-terminal regions of various
           plexins. Plexins are receptors for semaphorins, and
           plexin signalling is important in path finding and
           patterning of both neurons and developing blood vessels.
           The cytoplasmic region, which has been called a SEX
           domain in some members of this family, is involved in
           downstream signalling pathways, by interaction with
           proteins such as Rac1, RhoD, Rnd1 and other plexins.
           This domain acts as a RasGAP domain.
          Length = 538

 Score = 27.4 bits (61), Expect = 4.6
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 28  YLHLDKNHNGVLSKE---ELAAYGTGTLTPVFIERVFQECLTFETQMDYKTYLDFVLSLE 84
           Y HL K H+ +  K+     +      +  +++ R+     T +  +D     + +LS  
Sbjct: 322 YWHLVKPHDEMEDKKGSRGSSGERKKAIPEIYLTRLLSTKGTLQKFVD--DLFESILSTA 379

Query: 85  NKHEPQALQYLFRFLD 100
               P A++Y F FLD
Sbjct: 380 GSALPLAVKYFFDFLD 395


>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair. 
          Length = 60

 Score = 25.0 bits (55), Expect = 5.5
 Identities = 10/42 (23%), Positives = 17/42 (40%)

Query: 31 LDKNHNGVLSKEELAAYGTGTLTPVFIERVFQECLTFETQMD 72
          LDK+ +G +  EEL          +  E V +       ++D
Sbjct: 3  LDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEID 44


>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse
          superfamily of calcium sensors and calcium signal
          modulators; most examples in this alignment model have
          2 active canonical EF hands. Ca2+ binding induces a
          conformational change in the EF-hand motif, leading to
          the activation or inactivation of target proteins.
          EF-hands tend to occur in pairs or higher copy numbers.
          Length = 63

 Score = 25.2 bits (56), Expect = 6.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 30 HLDKNHNGVLSKEELAAY 47
            DK+ +G +S +EL A 
Sbjct: 8  LFDKDGDGTISADELKAA 25


>gnl|CDD|183114 PRK11388, PRK11388, DNA-binding transcriptional regulator DhaR;
           Provisional.
          Length = 638

 Score = 26.6 bits (59), Expect = 7.0
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 7/35 (20%)

Query: 36  NGVLSKEELAAYGTGTLTPVFIERVFQECLTFETQ 70
           NG LSK ELA  GT     +F+E+V  E L+ E Q
Sbjct: 406 NGRLSKFELAHGGT-----LFLEKV--EYLSPELQ 433


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0732    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,355,290
Number of extensions: 763517
Number of successful extensions: 704
Number of sequences better than 10.0: 1
Number of HSP's gapped: 703
Number of HSP's successfully gapped: 42
Length of query: 160
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 71
Effective length of database: 6,990,096
Effective search space: 496296816
Effective search space used: 496296816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)