RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11348
(160 letters)
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 42.5 bits (100), Expect = 1e-05
Identities = 24/138 (17%), Positives = 54/138 (39%), Gaps = 13/138 (9%)
Query: 31 LDKNHNGVLSKEE----LAAYGTGTLTPVFIERVFQECLTFET----QMDYKTYLDFVLS 82
+ + +G L+ E ++E++F+ TF+ +D+ Y+ +
Sbjct: 24 MTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFE---TFDFNKDGYIDFMEYVAALSL 80
Query: 83 LENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFD 142
+ Q L++ F+ D+ G +D L KAI +E E+ + +FD
Sbjct: 81 VLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTA--EEFTNMVFD 138
Query: 143 MAKPKDPSRITLQDLIDW 160
++L++ ++
Sbjct: 139 KIDINGDGELSLEEFMEG 156
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 41.9 bits (98), Expect = 2e-05
Identities = 24/143 (16%), Positives = 58/143 (40%), Gaps = 16/143 (11%)
Query: 31 LDKNHNGVLSKEE----LAAYGTGTLTPVFIERVFQECLTFETQ----MDYKTYLDFVLS 82
L G +++++ A + T + + VF+ +F++ +D+K Y+ +
Sbjct: 43 LKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFR---SFDSNLDGTLDFKEYVIALHM 99
Query: 83 LENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVK----- 137
Q L++ F D+ G + + AI K IT + + + ++
Sbjct: 100 TTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRA 159
Query: 138 DEIFDMAKPKDPSRITLQDLIDW 160
++I+ D ++T ++ I+
Sbjct: 160 EKIWKYFGKNDDDKLTEKEFIEG 182
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 41.0 bits (96), Expect = 4e-05
Identities = 20/154 (12%), Positives = 52/154 (33%), Gaps = 12/154 (7%)
Query: 16 FSATSALRVYGQYLHLDKNHNGVLSKEEL-----AAYGTGTLTPVFIERVFQECLTFET- 69
F + + +L + G L++E+ + G+ F +F
Sbjct: 22 FDRREIQQWHKGFLRDCPS--GQLAREDFVKIYKQFFPFGSPED-FANHLFTVFDKDNNG 78
Query: 70 QMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQE 129
+ ++ ++ + + + L + F D+ H GY+ + ++ K +
Sbjct: 79 FIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTL 138
Query: 130 PINFEDVK---DEIFDMAKPKDPSRITLQDLIDW 160
+ + +IF + + ITL + +
Sbjct: 139 NEDEATPEMRVKKIFKLMDKNEDGYITLDEFREG 172
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 41.0 bits (96), Expect = 4e-05
Identities = 24/154 (15%), Positives = 55/154 (35%), Gaps = 12/154 (7%)
Query: 16 FSATSALRVYGQYLHLDKNHNGVLSKEEL-----AAYGTGTLTPVFIERVFQEC-LTFET 69
F+ + Y ++ + G L + G T F VF +
Sbjct: 22 FTEKEVQQWYKGFIKDCPS--GQLDAAGFQKIYKQFFPFGDPTK-FATFVFNVFDENKDG 78
Query: 70 QMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQE 129
++++ ++ + + L++ F+ D+ + GY+ + AI + + + +
Sbjct: 79 RIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVEL 138
Query: 130 PINFEDVK---DEIFDMAKPKDPSRITLQDLIDW 160
P + D IF M ++TLQ+ +
Sbjct: 139 PEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEG 172
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 40.2 bits (94), Expect = 7e-05
Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 10/153 (6%)
Query: 16 FSATSALRVYGQYLHLDKNHNGVLSKEE----LAAYGTGTLTPVFIERVFQEC-LTFETQ 70
F + Y + + G L+K E + F E VF
Sbjct: 22 FDKKELQQWYKGFFKDCPS--GHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGY 79
Query: 71 MDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEP 130
+D+K ++ + L + F+ D+ + G + + AI K + + P
Sbjct: 80 IDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLP 139
Query: 131 INFEDVK---DEIFDMAKPKDPSRITLQDLIDW 160
+ + + ++IF+M ++TL++ +
Sbjct: 140 EDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEG 172
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 39.6 bits (92), Expect = 2e-04
Identities = 16/163 (9%), Positives = 52/163 (31%), Gaps = 11/163 (6%)
Query: 7 SVDRLEKNW-FSATSALRVYGQYLHLDKNHNGVLSKEE----LAAYGTGTLTPVFIERVF 61
+D+L+ F+ +Y + + G++ ++ + + + +F
Sbjct: 78 GLDQLQAQTKFTKKELQSLYRGFKNECPT--GLVDEDTFKLIYSQFFPQGDATTYAHFLF 135
Query: 62 QECLT-FETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAIS 120
+ ++ ++ + L + L++ F DI G + + K+I
Sbjct: 136 NAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIY 195
Query: 121 KQITESEQEPINFEDVK---DEIFDMAKPKDPSRITLQDLIDW 160
+ + + + F +T+ + ++
Sbjct: 196 DMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLET 238
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 39.0 bits (91), Expect = 2e-04
Identities = 26/138 (18%), Positives = 55/138 (39%), Gaps = 14/138 (10%)
Query: 31 LDKNHNGVLSKEE----LAAYGTGTLTPVFIERVFQECLTFET----QMDYKTYLDFVLS 82
+ + +G+ + E L G I++V+ TF+T +D+ ++ V
Sbjct: 29 MMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYN---TFDTNKDGFVDFLEFIAAVNL 85
Query: 83 LENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFD 142
+ + Q L++ F+ D G +D L F A+ + P E+ + +F
Sbjct: 86 IMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSP---EEFINLVFH 142
Query: 143 MAKPKDPSRITLQDLIDW 160
+ +TL++ I+
Sbjct: 143 KIDINNDGELTLEEFING 160
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 39.1 bits (91), Expect = 2e-04
Identities = 22/168 (13%), Positives = 57/168 (33%), Gaps = 11/168 (6%)
Query: 1 LRDEGLSVDRLEKNWFSATSALRVYGQYLHLDKNHNGVLSKEE----LAAYGTGTLTPVF 56
R E L ++ F+ +Y + + + GV+++E + + + +
Sbjct: 47 HRPEALE-LLEAQSKFTKKELQILYRGFKNECPS--GVVNEETFKEIYSQFFPQGDSTTY 103
Query: 57 IERVFQEC-LTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYF 115
+F + ++ ++ + L + L + F DI GY+ +
Sbjct: 104 AHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDI 163
Query: 116 FKAISKQITESEQEPINFEDVK---DEIFDMAKPKDPSRITLQDLIDW 160
KAI + + + + + + F +T+ + I+
Sbjct: 164 MKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIES 211
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 38.3 bits (89), Expect = 3e-04
Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 18/145 (12%)
Query: 31 LDKNHNGVLSKEEL---AAYGTGTLTPVFIERVFQECLTFET----QMDYKTYLDFVLSL 83
L++ +G L E ++E +F+ F+T +D+ Y+ + +
Sbjct: 32 LEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFR---AFDTNGDNTIDFLEYVAALNLV 88
Query: 84 ENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVK------ 137
L++ F+ D G +D L ++I K E + K
Sbjct: 89 LRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEE 148
Query: 138 --DEIFDMAKPKDPSRITLQDLIDW 160
D IF + +++L + ++
Sbjct: 149 VVDRIFLLVDENGDGQLSLNEFVEG 173
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 38.3 bits (89), Expect = 4e-04
Identities = 29/153 (18%), Positives = 61/153 (39%), Gaps = 11/153 (7%)
Query: 16 FSATSALRVYGQYLHLDKNH--NGVLSKEELAA--YGTGTLTPVFIERVFQECLTFETQM 71
FS + +Y + + +G+++KEE + T +F +RVF L
Sbjct: 42 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFD--LFDTKHN 99
Query: 72 DYKTYLDFVLSL----ENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESE 127
+ +F +L N + + F+ D+K QG+++ + A + +
Sbjct: 100 GILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNL 159
Query: 128 QEPINFEDVKDEIFDMAKPKDPSRITLQDLIDW 160
++ ED+ D+ F+ A K +I ++
Sbjct: 160 KD-TVIEDIIDKTFEEADTKHDGKIDKEEWRSL 191
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 37.9 bits (88), Expect = 5e-04
Identities = 22/153 (14%), Positives = 54/153 (35%), Gaps = 10/153 (6%)
Query: 16 FSATSALRVYGQYLHLDKNHNGVLSKEE----LAAYGTGTLTPVFIERVFQEC-LTFETQ 70
F+ +Y + + + GV+++E A + + +F T
Sbjct: 15 FTKRELQVLYRGFKNEXPS--GVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGS 72
Query: 71 MDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEP 130
+ ++ ++ + L + L++ F DI GY++ + KAI + +
Sbjct: 73 VKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPV 132
Query: 131 INFEDVK---DEIFDMAKPKDPSRITLQDLIDW 160
+ + + D F +TL + ++
Sbjct: 133 LKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLES 165
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 9e-04
Identities = 25/129 (19%), Positives = 41/129 (31%), Gaps = 37/129 (28%)
Query: 6 LSVDRLEKNWFSATSALRVYGQYLHLDKNHNGVLSKEELAAYGTGTLTPVF-----IERV 60
+ L KN+ +A + DK N L + G L +F +
Sbjct: 117 VKTKELIKNYITARIMAKR-----PFDKKSNSALFRA--VGEGNAQLVAIFGGQGNTDDY 169
Query: 61 FQECLTFETQMDYKTYLDFV----------LSLENKHEPQALQYLFRFLDIKH------- 103
F+E L + Y+TY V LS + A + + L+I
Sbjct: 170 FEE-L----RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 104 ---QGYLDT 109
+ YL +
Sbjct: 225 TPDKDYLLS 233
Score = 26.2 bits (57), Expect = 7.6
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 17/55 (30%)
Query: 88 EPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESE-QEPINFEDVKDEIF 141
+ +AL + L+ F K ++I E Q+ ++ E+V+ +F
Sbjct: 1858 DLRALDTVTNVLN--------------FIKL--QKIDIIELQKSLSLEEVEGHLF 1896
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 37.1 bits (86), Expect = 0.001
Identities = 28/158 (17%), Positives = 46/158 (29%), Gaps = 22/158 (13%)
Query: 16 FSATSALRVYGQYLHLDKNHNGVLSKEELAAYGTGTLTPVFIERVFQE------------ 63
FS + R+Y ++ LDK NG LS+E+ + P +R+
Sbjct: 23 FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINP-LGDRIINAFFSEGEDQVNFR 81
Query: 64 -----CLTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKA 118
F D + D L + FR D+ + L +
Sbjct: 82 GFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRM 141
Query: 119 ISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQD 156
+ EQ + D A S I+ +
Sbjct: 142 MVGVNISDEQ----LGSIADRTIQEADQDGDSAISFTE 175
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 36.9 bits (85), Expect = 0.001
Identities = 22/153 (14%), Positives = 54/153 (35%), Gaps = 10/153 (6%)
Query: 16 FSATSALRVYGQYLHLDKNHNGVLSKEE----LAAYGTGTLTPVFIERVFQEC-LTFETQ 70
F+ +Y + + + GV+++E A + + +F T
Sbjct: 48 FTKRELQVLYRGFKNECPS--GVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGS 105
Query: 71 MDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEP 130
+ ++ ++ + L + L++ F DI GY++ + KAI + +
Sbjct: 106 VKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPV 165
Query: 131 INFEDVK---DEIFDMAKPKDPSRITLQDLIDW 160
+ + + D F +TL + ++
Sbjct: 166 LKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLES 198
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 36.7 bits (85), Expect = 0.001
Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 10/153 (6%)
Query: 16 FSATSALRVYGQYLHLDKNHNGVLSKEE----LAAYGTGTLTPVFIERVFQEC-LTFETQ 70
F+ Y +L + G LS EE + F E VF+ +
Sbjct: 22 FTEHEIQEWYKGFLRDCPS--GHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGT 79
Query: 71 MDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEP 130
+D++ ++ + Q L++ F D+ GY+ + +AI K ++ + P
Sbjct: 80 IDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMP 139
Query: 131 INFEDVK---DEIFDMAKPKDPSRITLQDLIDW 160
+ + ++IF +++L++ I
Sbjct: 140 EDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRG 172
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 37.0 bits (86), Expect = 0.001
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 31 LDKNHNGVLSKEELAA----YGTGTLTPVFIERVFQECLTFETQMDYK-----TYLDFV- 80
+DKN +G L ++EL + + ++ E D+ Y +FV
Sbjct: 355 IDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVT 414
Query: 81 --LSLENKHEPQALQYLFRFLDIKHQGYL 107
+ ++ L+ F+ D G +
Sbjct: 415 VAMDRKSLLSKDKLESAFQKFDQDGNGKI 443
Score = 32.0 bits (73), Expect = 0.075
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 28 YLHLDKNHNGVLSKEELA-AYGTGTLTPVFIERVFQEC 64
+ D++ NG +S +ELA +G L + +
Sbjct: 432 FQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGI 469
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 34.4 bits (79), Expect = 0.008
Identities = 28/154 (18%), Positives = 65/154 (42%), Gaps = 13/154 (8%)
Query: 16 FSATSALRVYGQYLHLDKNH--NGVLSKEELAA--YGTGTLTPVFIERVFQECLTFETQM 71
F+ +Y + L + +G++ KEE + +F +R+F F+ +
Sbjct: 31 FTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRRNLFADRIFD---VFDVKR 87
Query: 72 D-YKTYLDFVLSL----ENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITES 126
+ + +FV SL + + +++ F+ D++ G+++ L A+ +
Sbjct: 88 NGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELV 147
Query: 127 EQEPINFEDVKDEIFDMAKPKDPSRITLQDLIDW 160
E + E + D+ F A K+ +I + + D+
Sbjct: 148 LSEDM-IEVMVDKAFVQADRKNDGKIDIDEWKDF 180
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 34.7 bits (80), Expect = 0.010
Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 26/140 (18%)
Query: 27 QYLHLDKNHNGVLSKEELAA-----------------YGTGTLTPVFIERVFQEC-LTFE 68
+ LD N++G+L ++EL G+ I+ + +
Sbjct: 336 IFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGS 395
Query: 69 TQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQ 128
++Y ++ + + ++ F+ D G + T L ++
Sbjct: 396 GSIEYSEFIASAIDRTILLSRERMERAFKMFDKDGSGKISTKEL--------FKLFSQAD 447
Query: 129 EPINFEDVKDEIFDMAKPKD 148
I E+++ I + KD
Sbjct: 448 SSIQMEELESIIEQVDNNKD 467
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 34.1 bits (78), Expect = 0.011
Identities = 22/143 (15%), Positives = 46/143 (32%), Gaps = 22/143 (15%)
Query: 29 LHLDKNHNGVLSKEELAAYGTGTLTPVFIERVFQ--------ECLTFETQMDYKTYLDFV 80
++ + + E++ + P F ER+ + + L+FE DF+
Sbjct: 66 RSVESSLRAQVPFEQILSLPELKANP-FKERICRVFSTSPAKDSLSFE---------DFL 115
Query: 81 LSLENKHE----PQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDV 136
L + Y FR D G L+ L ++ + ++ + +
Sbjct: 116 DLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQL 175
Query: 137 KDEIFDMAKPKDPSRITLQDLID 159
D I + + I L +
Sbjct: 176 IDNILEESDIDRDGTINLSEFQH 198
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 34.3 bits (79), Expect = 0.012
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 15/92 (16%)
Query: 31 LDKNHNGVLSKEELAAYGTGTLTPVFIERVFQECLTFETQMD------------YKTYLD 78
+DKN +G L + EL + + + E ++D Y Y +
Sbjct: 344 MDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSE 403
Query: 79 FV---LSLENKHEPQALQYLFRFLDIKHQGYL 107
FV + + + L+ FR D + G +
Sbjct: 404 FVTVAMDRKTLLSRERLERAFRMFDSDNSGKI 435
Score = 32.0 bits (73), Expect = 0.063
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 28 YLHLDKNHNGVLSKEELA-AYGTGTLTPVFIERVFQEC 64
+ D +++G +S ELA +G + + V E
Sbjct: 424 FRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEV 461
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 34.3 bits (79), Expect = 0.012
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 12/93 (12%)
Query: 27 QYLHLDKNHNGVLSKEEL-----------AAYGTGTLTPVFIERVFQEC-LTFETQMDYK 74
+ LDKN +G L K+EL G ++ + +E ++Y
Sbjct: 360 IFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYS 419
Query: 75 TYLDFVLSLENKHEPQALQYLFRFLDIKHQGYL 107
++ + + + L+ F D G +
Sbjct: 420 EFISVCMDKQILFSEERLRRAFNLFDTDKSGKI 452
Score = 32.0 bits (73), Expect = 0.071
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 28 YLHLDKNHNGVLSKEELA-AYGTGTLTPVFIERVFQEC 64
+ D + +G ++KEELA +G +++ V E
Sbjct: 441 FNLFDTDKSGKITKEELANLFGLTSISEKTWNDVLGEA 478
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 32.4 bits (74), Expect = 0.033
Identities = 22/138 (15%), Positives = 47/138 (34%), Gaps = 12/138 (8%)
Query: 29 LHLDKNHNGVLSKEELAAYGTGTLTPVFIERVFQECLTFET-----QMDYKTYLDF--VL 81
++ + + E++ + P F ER+ + F T + ++ +LD V
Sbjct: 35 RSVESSLRAQVPFEQILSLPELKANP-FKERICR---VFSTSPAKDSLSFEDFLDLLSVF 90
Query: 82 SLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIF 141
S + Y FR D G L+ L ++ + ++ + + D I
Sbjct: 91 SDTATPD-IKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNIL 149
Query: 142 DMAKPKDPSRITLQDLID 159
+ + I L +
Sbjct: 150 EESDIDRDGTINLSEFQH 167
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.049
Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 20/106 (18%)
Query: 65 LTFET-QMDYKTYLD--------FVLSLENKHEPQALQYLFRFLDIKH-----QGYLDTF 110
+ FET + Y+ Y D FV + + K + + +I H T
Sbjct: 7 MDFETGEHQYQ-YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 111 TLFYFFKAISKQITE---SEQEPINFEDVKDEIFDMAKPKDPSRIT 153
LF+ + +++ + E IN++ + I + + PS +T
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI--KTEQRQPSMMT 109
Score = 29.8 bits (66), Expect = 0.40
Identities = 30/202 (14%), Positives = 53/202 (26%), Gaps = 80/202 (39%)
Query: 28 YLHLDKNH--------NGVLSKEELAAYGTGTLTPVFIERVFQECL-------------T 66
+D N N L + A L + + ++ CL
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAE----LRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 67 FE--------TQMDYKTYLDFVLSLENKH-----------EPQALQYLFRFLDIKHQG-- 105
F T+ +K DF+ + H + L ++LD + Q
Sbjct: 262 FNLSCKILLTTR--FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 106 --------------------YLDTFTLF--YFFKAISKQITES--EQEPINFEDVKDE-- 139
L T+ + ++ I S EP + + D
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 140 IFDMAKPKDPSRITLQDL-IDW 160
+F P + I L + W
Sbjct: 380 VF----PPS-AHIPTILLSLIW 396
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 30.1 bits (68), Expect = 0.22
Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 25/160 (15%)
Query: 16 FSATSALRVYGQYLHLDKNHNGVLSKEELAAYGTGTLTPVFIERVFQE-------CLTFE 68
FS S LR++ ++ LD+N G LS+ +L G + P +R+ + + F
Sbjct: 23 FSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVNP-LGDRIIESFFPDGSQRVDFP 81
Query: 69 -----------TQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFK 117
+ + D L Y F+ D+ G + + +
Sbjct: 82 GFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLR 141
Query: 118 AI-SKQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQD 156
+ Q+TE + E++ D A ++ +
Sbjct: 142 LMVGVQVTEEQ-----LENIADRTVQEADEDGDGAVSFVE 176
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 28.7 bits (65), Expect = 0.60
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 31 LDKNHNGVLSKEELAAYGTGTLTPVFIERVFQECLTFET----QMDYKTYLDFVLSLENK 86
LD +++G LS EE + P ++RV F+T ++D+K +F+ +
Sbjct: 15 LDLDNSGSLSVEEFMSLPELQQNP-LVQRVIDI---FDTDGNGEVDFK---EFIEGVSQF 67
Query: 87 HEP----QALQYLFRFLDIKHQGYLDTFTLFYFFKAIS-KQITESEQEPI 131
Q L++ FR D+ GY+ LF K + + +++ + I
Sbjct: 68 SVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQI 117
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 29.4 bits (65), Expect = 0.66
Identities = 18/119 (15%), Positives = 46/119 (38%), Gaps = 13/119 (10%)
Query: 28 YLHLDKNHNGVLSKEEL--AAYGTG-TLTPVFIERVFQECLTFETQMDYKTYLDFVLSLE 84
+ D + +G +S E+ A G L + + E +D+ ++ ++ LE
Sbjct: 613 FRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLE 672
Query: 85 NKHEPQALQYLFRFLDIKHQGY----LDTFTLFYFFKAISKQITESEQEPINFEDVKDE 139
+ +F+ LD ++ G L ++ F ++ I +++ +++
Sbjct: 673 ILFK------IFKQLDPENTGTIQLDLISWLSFSVLGKLAAAIEHHHHHHMHYSNIEAN 725
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 28.6 bits (64), Expect = 0.79
Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 20/117 (17%)
Query: 31 LDKNHNGVLSKEELAA-----YGTGTLTPVFIERVFQECLTFETQMDYK-----TYLDFV 80
+D +G +S+E+ L+ E QE L Q+ + +
Sbjct: 23 VDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISVEEAA 82
Query: 81 LSLENK----------HEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESE 127
++ + ++ +D GY+ F +A+ +T+ +
Sbjct: 83 VNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDK 139
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 28.4 bits (64), Expect = 0.82
Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 13/107 (12%)
Query: 31 LDKNHNGVLSKEEL-AAYGTGTLTPVFIERVFQECLTFETQMDYKTYLDF-----VLSLE 84
LD NHNG LS E+ + + I R+ Q ++ + + +
Sbjct: 48 LDTNHNGSLSHREIYTVLASVGIKKWDINRILQAL-----DINDRGNITYTEFMAGCYRW 102
Query: 85 NKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPI 131
E L+ F +D GY+ + K + ++ +
Sbjct: 103 KNIESTFLKAAFNKIDKDEDGYISKSDIVSLVH--DKVLDNNDIDNF 147
Score = 26.5 bits (59), Expect = 3.9
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 30 HLDKNHNGVLSKEEL-AAYGTGTLTPVFIERVFQEC 64
+DK+ +G +SK ++ + L I+ F
Sbjct: 116 KIDKDEDGYISKSDIVSLVHDKVLDNNDIDNFFLSV 151
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 28.3 bits (63), Expect = 0.97
Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 20/134 (14%)
Query: 30 HLDKNHNGVLSKEELAAY---------GTGTLTPVFIERVFQE----------CLTFETQ 70
H D + +G L +EL G ++ + +
Sbjct: 24 HFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHV 83
Query: 71 MDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEP 130
+ + + + + +R D H G+++T L F K + ++ ++ +
Sbjct: 84 LPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDT 143
Query: 131 INFEDVKDEIFDMA 144
E D + +
Sbjct: 144 KLAEYT-DLMLKLF 156
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 26.2 bits (58), Expect = 2.4
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 31 LDKNHNGVLSKEELAAYGTG-TLTPVFIERVFQEC 64
D N +G L +EE A T + P E VFQ
Sbjct: 36 CDANRSGRLEREEFRALCTELRVRPADAEAVFQRL 70
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 26.7 bits (59), Expect = 2.7
Identities = 20/122 (16%), Positives = 31/122 (25%), Gaps = 25/122 (20%)
Query: 31 LDKNHNGVLSKEELAAYGTG--------TLTPVFIERVFQECLTFETQMDYKTYLDF--- 79
LD NHNG +S +E+ + T + E M Y D+
Sbjct: 25 LDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETDWPAY 84
Query: 80 --------------VLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITE 125
E LF +D G + + KA +
Sbjct: 85 IEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSS 144
Query: 126 SE 127
+
Sbjct: 145 ED 146
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 27.1 bits (60), Expect = 2.8
Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 23/131 (17%)
Query: 16 FSATSALRVYGQYL-------------HLDKNHNGVLSKEELAAY---GTGTLTPVFIER 59
S + LR L + +G S ++L T+ +++
Sbjct: 103 ASGYNRLRPSKPMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKK 162
Query: 60 VFQEC-LTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKA 118
+F + +M Y T + L L FR +D G L F
Sbjct: 163 LFVMVENDTKGRMSYITLVAVANDLAA------LVADFRKIDTNSNGTLSRKEFREHFVR 216
Query: 119 ISKQITESEQE 129
+ +
Sbjct: 217 LGFDKKSVQDA 227
Score = 25.9 bits (57), Expect = 7.2
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 30 HLDKNHNGVLSKEEL--AAYGTGTLTPVFIERVFQECLTFETQMDYK-TYLDFVLSLENK 86
+D N NG LS++E G + +F+ + + ++V
Sbjct: 196 KIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALFRY---ADEDESDDVGFSEYVHLGLCL 252
Query: 87 HEPQALQYLFRFLDIKHQGYLD 108
L+ L+ F D G L
Sbjct: 253 LV---LRILYAFADFDKSGQLS 271
Score = 25.9 bits (57), Expect = 7.2
Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 4/39 (10%)
Query: 30 HLDKNHNGVLSKEEL----AAYGTGTLTPVFIERVFQEC 64
D + +G LSKEE+ E F
Sbjct: 261 FADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVV 299
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 27.0 bits (59), Expect = 3.2
Identities = 8/66 (12%), Positives = 17/66 (25%)
Query: 95 LFRFLDIKHQGYLDTFTLFYFFKAISKQITESEQEPINFEDVKDEIFDMAKPKDPSRITL 154
+ L K F + + P V ++ + ++T+
Sbjct: 402 GLKILSGKIDQCRTIFLNKQPNPRKKLLVPCALDPPNPNCYVCASKPEVTVRLNVHKVTV 461
Query: 155 QDLIDW 160
L D
Sbjct: 462 LTLQDK 467
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 26.8 bits (59), Expect = 3.2
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 30 HLDKNHNGVLSKEELAA----YGTGTLTPVFIERVFQEC 64
+D + N ++ +EE +F+E
Sbjct: 138 EIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKEL 176
Score = 26.4 bits (58), Expect = 4.1
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 14/92 (15%)
Query: 31 LDKNHNGVLSKEEL--AAYGTGTLTPVF------IERVFQECLTFET------QMDYKTY 76
DKN G L +E+ L +R F + T + D+ +
Sbjct: 57 FDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEF 116
Query: 77 LDFVLSLENKHEPQALQYLFRFLDIKHQGYLD 108
L+F L L ++ L +F +D +D
Sbjct: 117 LEFRLMLCYIYDFFELTVMFDEIDASGNMLVD 148
>2gnx_A Hypothetical protein; structural genomics, protein structure
initiative, PSI, center for eukaryotic structural
genomics, CESG, unknown function; 2.45A {Mus musculus}
SCOP: a.246.3.1 d.109.3.1
Length = 344
Score = 26.7 bits (58), Expect = 3.4
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 66 TFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAISKQITE 125
TFE Q + K +L S + P +L + L F+ FYF +A+S+Q T
Sbjct: 128 TFEKQRETKKHLFGGQSQKAVQPPHLFLWLMKL----KTMLLAKFS-FYFHEALSRQTTA 182
Query: 126 SE 127
SE
Sbjct: 183 SE 184
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 26.6 bits (59), Expect = 3.5
Identities = 18/122 (14%), Positives = 36/122 (29%), Gaps = 25/122 (20%)
Query: 31 LDKNHNGVLSKEELAAYGTGT--------LTPVFIERVFQECLTFETQMDYKTYLDF--- 79
LD N NG ++ +E+ + + +V E M+Y + F
Sbjct: 29 LDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQF 88
Query: 80 ----------VLSLENKHEPQALQYL----FRFLDIKHQGYLDTFTLFYFFKAISKQITE 125
L ++EP ++ F D G + + K ++
Sbjct: 89 LDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQ 148
Query: 126 SE 127
+
Sbjct: 149 ED 150
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane,
transmembra membrane protein, signaling protein; 1.99A
{Mus musculus} PDB: 3ryt_A*
Length = 627
Score = 27.0 bits (59), Expect = 3.8
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 27 QYLHLDKNHNGVLSKEELAAYGTGTLTPVFIERVFQECLTFETQMDYKTYLDFVLSLENK 86
+ HL +NH+ +E G+ ++ +++ R+ T + +D F +
Sbjct: 383 KLWHLVRNHDHTDHREGDR--GSKMVSEIYLTRLLATKGTLQKFVDDLFETVFSTAHRGS 440
Query: 87 HEPQALQYLFRFLD 100
P A++Y+F FLD
Sbjct: 441 ALPLAIKYMFDFLD 454
>3qnq_A PTS system, cellobiose-specific IIC component; membrane protein,
transporter, enzyme IIC, phosphoenolpyruva
phosphotransferase system; HET: CBS ZDM MAL CIT; 3.29A
{Bacillus cereus}
Length = 442
Score = 26.1 bits (58), Expect = 5.2
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 111 TLFY--FFKAISKQITESEQEPINFEDVKDE 139
+ Y F K KQ E+ E++ +
Sbjct: 412 FVIYLPFLKIWDKQKIAEEKGEAAAENLYFQ 442
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 26.0 bits (58), Expect = 5.2
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 28 YLHLDKNHNGVLSKEEL--AAYGTG-TLTPVFIERVFQECLTFETQMDYK-TYLDFVLSL 83
+ D++++G++ K EL A G G L+ F + + ++ F+ Q + + DF+
Sbjct: 80 FRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRK---FDRQGRGQIAFDDFIQGC 136
Query: 84 ENKHEPQALQYLFRFLDIKHQGY 106
Q L +FR D G+
Sbjct: 137 IVL---QRLTDIFRRYDTDQDGW 156
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural
genomics, JCSG, PSI, protein structure initiative; HET:
MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Length = 415
Score = 26.0 bits (56), Expect = 6.4
Identities = 6/82 (7%), Positives = 19/82 (23%), Gaps = 5/82 (6%)
Query: 53 TPVFIERVFQECLTFETQMDYKTYLDFVLSLENKHEPQALQYLFRFLDIKHQGYLDTFTL 112
+ + + + + ++ F L K + L
Sbjct: 46 VNDLRDMILNYNPSQGVSNSGAQDEEIHKQI-----VIEMKRCFENLQNKSFKSVLPVVL 100
Query: 113 FYFFKAISKQITESEQEPINFE 134
+ Q E + + ++
Sbjct: 101 LNTLRKCYPQFAERDSQGGFYK 122
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal
binding protein; NMR {Neanthes diversicolor} SCOP:
a.39.1.5 PDB: 2scp_A
Length = 174
Score = 25.8 bits (57), Expect = 6.5
Identities = 2/17 (11%), Positives = 10/17 (58%)
Query: 30 HLDKNHNGVLSKEELAA 46
+D + +G +++ + +
Sbjct: 14 RIDFDKDGAITRMDFES 30
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 25.7 bits (57), Expect = 6.8
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 30 HLDKNHNGVLSKEELA-AYGTGTLTPVFIERVFQEC 64
D + +G ++ EEL +G + +V QEC
Sbjct: 131 QFDSDGSGKITNEELGRLFGVTEVDDETWHQVLQEC 166
Score = 25.3 bits (56), Expect = 8.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 31 LDKNHNGVLSKEELAA 46
LD N +G L ++EL
Sbjct: 49 LDNNGDGQLDRKELIE 64
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA
methylase, type I restriction enzyme ST protein; HET:
SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP:
c.66.1.45
Length = 445
Score = 25.7 bits (57), Expect = 7.6
Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 20/99 (20%)
Query: 71 MDYKTYLDFVLSL----------ENKHEPQALQYLFRFLDIKHQGYLDTFTLFYFFKAIS 120
+ + Y+ + L E E A+ +++ D+ LD L ++
Sbjct: 28 IGFTDYITQLTYLLFLKMDAENVEMFGEESAIPTGYQWADLIAFDGLD---LVKQYEETL 84
Query: 121 KQITESEQEPINFEDVKDEIFDMAKPKDPSRITLQDLID 159
K ++E + ++ I+ A+ K + L+ +I
Sbjct: 85 KLLSELD-------NLIGTIYTKAQNKIDKPVYLKKVIT 116
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 25.9 bits (58), Expect = 7.8
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 7/29 (24%)
Query: 52 LTPV-------FIERVFQECLTFETQMDY 73
LTPV R+F ++DY
Sbjct: 329 LTPVAIAAGRKLSNRLFGPEKFRNDKLDY 357
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 25.5 bits (56), Expect = 9.0
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 14/84 (16%)
Query: 28 YLHLDKNHNGVLSKEEL--AAYGTG-TLTPVFIERVFQECLTFET--QMDYKTYLDFVLS 82
++ D + +G + +EL A G L+P + + + + T ++ + Y+ +
Sbjct: 109 FISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKR---YSTNGKITFDDYIACCVK 165
Query: 83 LENKHEPQALQYLFRFLDIKHQGY 106
L +AL FR D QG
Sbjct: 166 L------RALTDSFRRRDTAQQGV 183
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform
A; EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 24.7 bits (54), Expect = 9.4
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 30 HLDKNHNGVLSKEEL 44
+ D +S+EE
Sbjct: 32 NFDTMKTNTISREEF 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.410
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,491,825
Number of extensions: 138933
Number of successful extensions: 461
Number of sequences better than 10.0: 1
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 98
Length of query: 160
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,300,587
Effective search space: 318243438
Effective search space used: 318243438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)